Citrus Sinensis ID: 005361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700
Protein Sequence
MASLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVMLF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEccccccccccccEEEccccccccccccccccccccEEEEccccccccccHHHHccccccccccccccccccccHHHHcccccccEEcccccccccccHHHcccccccEEEccccEEEEccccccccccccccEEcccccccccccHHHHcccccccEEccccccccccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccEEccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccEccccccccccccccccccccccccEEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHccccccEEEEccccccccccccccccccEEEEEEcccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHcccccEEEEEEcccccccccccccccccccHEEEEEcccccccccccHHHccccccccccccccEEEEEcccccccccccEEccccccccccccccccccccEcccccccccccccccccEEccccccccccccHHHHHcccccccccEEEEEEcccccEEEEEcHHHEEccccccHHHcccccccEEEcccEEEHHHHHHHHcccccccEEEEccccccccEEEEEEEEcccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccEcHHHHHHHHccccHHccccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
MASLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKlgkkdwnfgvdpcsqkgnwelssddkkgfesnvtcdcssatCHVVTIALKaqnltgtlpteLSKLRYlkqldlsrncltgsfspqwaSLQLVELSVMgnrlsgpfpkvltnittlknlsiegnlftgsippdIRKLINLQKLilssnsftgelpaeltkltnlndlrisdnnfsgkipeFIGKWKKIQKLHIqgsslegpipasISALTSLtdlrisdlkgsesafpkldkmnlktLILTKClihgeipdyigdmtKLKNIDlsfnnltggiptTFEKLAKTNFMyltgnkltgpvpkyifnsnknvdislnnftwessdpiecprgsvnlvesyssprnkldkvhpclrqnfpcsapadqyhytlhincggakintghtkyeADMEARGASmfyssgqywafsstgkfmdddtdldnyirtntstlskvsaVDLELYRTARVSPLSLTYYGlclgngnytVRLHFAEIIFkndstfnslgkrIFDIYIQEKlvkkdfniedeaggtgipivknfpaevtshTLKIHLYwagrgttgiplrgtygplISAIsvksnfkppvvhskkNHVMIMAAIVGASVLLVLLILFIMRWKgclggkvsadkelrgldlqTGLYTLRQIKAatnnfdpankvgeggfgSVYKVNVMLF
Flexible Loop (DISEMBL)
MASLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRklgkkdwnfgvdpcsqkgnwelssddKKGFESNVTCDCSSATCHVVTIALKaqnltgtlpTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKltnlndlrisdnnfsgkiPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKgsesafpkldkmNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRtntstlskvsavdlELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGkvsadkelrgLDLQTGLYTLRQIKAAtnnfdpankvgeggfgsvYKVNVMLF
Low Complexity Region (SEG)
MAslipilklllashllfislVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVMLF
Disordered region (IsUnstruct)
***LIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWEL******GFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDL*****AFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLV*********LDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM**
Disordered Region (DISOPRED)
********KLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCG***********************YSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHF****************RIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISA*********************MAAIVGASVLLVLLILFIMRWKGC**************DLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVMLF
Disordered Region (DISEMBL)
MASLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVMLF
Disordered Region (DISPRO)
**SLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVMLF
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVMLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	700	2.2.26 [Sep-21-2011]
C0LGE0	1014	Probable LRR receptor-lik	yes	no	0.957	0.660	0.590	0.0
C0LGN2	1020	Probable leucine-rich rep	no	no	0.961	0.659	0.467	1e-176
C0LGG8	1038	Probable LRR receptor-lik	no	no	0.967	0.652	0.464	1e-172
C0LGG9	1035	Probable LRR receptor-lik	no	no	0.945	0.639	0.465	1e-168
C0LGG7	953	Probable LRR receptor-lik	no	no	0.878	0.645	0.432	1e-145
Q9FXF2	1021	Probable LRR receptor-lik	no	no	0.935	0.641	0.424	1e-143
Q9ASQ6	1019	Probable LRR receptor-lik	no	no	0.955	0.656	0.418	1e-133
C0LGH2	1032	Probable LRR receptor-lik	no	no	0.94	0.637	0.368	1e-116
C0LGH3	1033	Probable LRR receptor-lik	no	no	0.955	0.647	0.366	1e-113
Q42371	976	LRR receptor-like serine/	no	no	0.357	0.256	0.349	7e-35

>sp|C0LGE0|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/682 (59%), Positives = 501/682 (73%), Gaps = 12/682 (1%)

Query: 22  VTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFES 81
           + F G    +  NKLH  EV+ALK+IG+KLGKKDW+F  DPCS +G W +++   KGFES
Sbjct: 16  LIFHGRLGFSDNNKLHEAEVRALKEIGKKLGKKDWDFNKDPCSGEGTWIVTTYTTKGFES 75

Query: 82  NVTCDCS----SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWA 137
           N+TCDCS    +++CHV+ IALK+QNLTG +P E SKLR+LK LDLSRN LTGS   +WA
Sbjct: 76  NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWA 135

Query: 138 SLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN 197
           S++L +LS MGNRLSGPFPKVLT +T L+NLS+EGN F+G IPPDI +L++L+KL L SN
Sbjct: 136 SMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSN 195

Query: 198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISA 257
           +FTG L  +L  L NL D+RISDNNF+G IP+FI  W +I KL + G  L+GPIP+SIS+
Sbjct: 196 AFTGPLTEKLGLLKNLTDMRISDNNFTGPIPDFISNWTRILKLQMHGCGLDGPIPSSISS 255

Query: 258 LTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN 316
           LTSLTDLRISDL G  S+FP L  + ++KTLIL KC I G IP YIGD+ KLK +DLSFN
Sbjct: 256 LTSLTDLRISDLGGKPSSFPPLKNLESIKTLILRKCKIIGPIPKYIGDLKKLKTLDLSFN 315

Query: 317 NLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI-ECP 375
            L+G IP++FE + K +F+YLTGNKLTG VP Y    NKNVD+S NNFT ESS P  +C 
Sbjct: 316 LLSGEIPSSFENMKKADFIYLTGNKLTGGVPNYFVERNKNVDVSFNNFTDESSIPSHDCN 375

Query: 376 RGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTG-HTKYEA 434
           R + NLVES++   NK  K   C  Q  PC  P   + Y L+INCGG ++       Y+A
Sbjct: 376 RVTSNLVESFALG-NKSHKGSTCFLQRMPCVHPKRYHLYKLYINCGGGEVKVDKEITYQA 434

Query: 435 DMEARGASMFY-SSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLS-KVSAVDLELYRTAR 492
           D E +GASM+   + + WA SSTG FMD+D D D Y   NTS LS   S+    LYRTAR
Sbjct: 435 DDEPKGASMYVLGANKRWALSSTGNFMDNDDDADEYTVQNTSRLSVNASSPSFGLYRTAR 494

Query: 493 VSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIED 552
           VSPLSLTYYG+CLGNGNYTV LHFAEIIF +D+T  SLGKR+FDIY+Q++LV K+FNI++
Sbjct: 495 VSPLSLTYYGICLGNGNYTVNLHFAEIIFTDDNTLYSLGKRLFDIYVQDQLVIKNFNIQE 554

Query: 553 EAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVV 612
            A G+G PI+K+F   VT HTLKI L WAG+GTTGIP+RG YGP+ISAISV+ NFKPPV 
Sbjct: 555 AARGSGKPIIKSFLVNVTDHTLKIGLRWAGKGTTGIPIRGVYGPMISAISVEPNFKPPVY 614

Query: 613 HSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIK 672
           +  K+ ++ +   V A+ LL+ +I+ +  WK     K   DKELRGLDLQTG +TLRQIK
Sbjct: 615 YDTKDIILKVGVPVAAATLLLFIIVGVF-WKK-RRDKNDIDKELRGLDLQTGTFTLRQIK 672

Query: 673 AATNNFDPANKVGEGGFGSVYK 694
           AAT+NFD   K+GEGGFGSVYK
Sbjct: 673 AATDNFDVTRKIGEGGFGSVYK 694

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1

 Score =  619 bits (1596), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 326/697 (46%), Positives = 447/697 (64%), Gaps = 24/697 (3%)

Query: 9   KLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQ--- 65
           + LL ++   +SL+ F  +  +AT   L  EEV AL+ +   L K +WNF VDPC +   
Sbjct: 5   RQLLFTYYFIVSLILFSDFVSSAT---LPKEEVDALQSVATALKKSNWNFSVDPCDETLS 61

Query: 66  KGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSR 125
           +G W  + +  KGFE  VTC+CSS  CHV  I LKAQ+L G+LPT+LS L +L++LDL+R
Sbjct: 62  EGGWR-NPNAAKGFEDAVTCNCSSVICHVTNIVLKAQDLQGSLPTDLSGLPFLQELDLTR 120

Query: 126 NCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK 185
           N L GS  P+W +  L+ +S++GNR+SG  PK L N+TTL  L +E N  +G IPP++  
Sbjct: 121 NYLNGSIPPEWGASSLLNISLLGNRISGSIPKELGNLTTLSGLVLEYNQLSGKIPPELGN 180

Query: 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS 245
           L NL++L+LSSN+ +GE+P+   KLT L DLRISDN F+G IP+FI  WK ++KL IQ S
Sbjct: 181 LPNLKRLLLSSNNLSGEIPSTFAKLTTLTDLRISDNQFTGAIPDFIQNWKGLEKLVIQAS 240

Query: 246 SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGD 304
            L GPIP++I  L +LTDLRI+DL G ES FP L  M ++K LIL  C + G++P Y+G 
Sbjct: 241 GLVGPIPSAIGLLGTLTDLRITDLSGPESPFPPLRNMTSMKYLILRNCNLTGDLPAYLGQ 300

Query: 305 MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNF 364
             KLKN+DLSFN L+G IP T+  L+  +F+Y T N L G VP ++ +    +DI+ NNF
Sbjct: 301 NRKLKNLDLSFNKLSGPIPATYSGLSDVDFIYFTSNMLNGQVPSWMVDQGDTIDITYNNF 360

Query: 365 TWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAK 424
           + + ++  EC + SVN   S S           CL + + C     +  Y LHINCGG +
Sbjct: 361 SKDKTE--ECQQKSVNTFSSTSPLVANNSSNVSCLSK-YTCP----KTFYGLHINCGGNE 413

Query: 425 INTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKV--SA 482
           I +  TKY+AD        +Y S   W  S+TG F+DDD   +   + + S+  K+  S+
Sbjct: 414 ITSNETKYDAD--TWDTPGYYDSKNGWVSSNTGNFLDDDRTNNGKSKWSNSSELKITNSS 471

Query: 483 VDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEK 542
           +D  LY  AR+S +SLTY  LCLG GNYTV LHFAEI+F   + +++LG+R FDIY+Q K
Sbjct: 472 IDFRLYTQARLSAISLTYQALCLGKGNYTVNLHFAEIMFNEKNMYSNLGRRYFDIYVQGK 531

Query: 543 LVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAIS 602
              KDFNI DEA G G  +VK FP  VT+  L+I L WAG+GT  IP+RG YGPLISA+S
Sbjct: 532 REVKDFNIVDEAKGVGKAVVKKFPVMVTNGKLEIRLQWAGKGTQAIPVRGVYGPLISAVS 591

Query: 603 VKSNFKPP-----VVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELR 657
           V  +F PP           +   ++ +++ ++V LVLLI  I+ W+GCL  K   +K+ +
Sbjct: 592 VDPDFIPPKEPGTGTGGGSSVGTVVGSVIASTVFLVLLIGGILWWRGCLRPKSQMEKDFK 651

Query: 658 GLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
            LD Q   ++LRQIK AT+NFDPANK+GEGGFG V+K
Sbjct: 652 NLDFQISSFSLRQIKVATDNFDPANKIGEGGFGPVHK 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1

 Score =  605 bits (1560), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 326/702 (46%), Positives = 448/702 (63%), Gaps = 25/702 (3%)

Query: 1   MASLIPILKLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGV 60
           M  +    K++    L+F+ L  F      + A  L  +EV+ L+ I RKL  +  N   
Sbjct: 1   MGFIFSTEKVVYVLLLIFVCLENF-----GSNAQLLPEDEVQTLRTIFRKLQNQTVNIER 55

Query: 61  DPCSQKGNWELSSDDKKGF-ESNVTCDC---SSATCHVVTIALKAQNLTGTLPTELSKLR 116
             CS + NW    +       SN+TCDC   +S+ C V  I LK+ +L G  P E   L 
Sbjct: 56  TSCSDQ-NWNFVVESASNSPTSNITCDCTFNASSVCRVTNIQLKSFSLPGIFPPEFGNLT 114

Query: 117 YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFT 176
            L+++DLSRN L G+     + + L  LSV+GNRLSGPFP  L +ITTL ++++E NLFT
Sbjct: 115 RLREIDLSRNFLNGTIPTTLSQIPLEILSVIGNRLSGPFPPQLGDITTLTDVNLETNLFT 174

Query: 177 GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
           G +P ++  L +L++L+LS+N+FTG++P  L+ L NL + RI  N+ SGKIP+FIG W  
Sbjct: 175 GPLPRNLGNLRSLKELLLSANNFTGQIPESLSNLKNLTEFRIDGNSLSGKIPDFIGNWTL 234

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES-AFPKL-DKMNLKTLILTKCLI 294
           +++L +QG+S+EGPIP SIS LT+LT+LRI+DL+G  + +FP L + M +K L+L  CLI
Sbjct: 235 LERLDLQGTSMEGPIPPSISNLTNLTELRITDLRGQAAFSFPDLRNLMKMKRLVLRNCLI 294

Query: 295 HGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSN 354
            G IP+YIG M++LK +DLS N LTG IP TF  L   NFM+L  N LTGPVP++I NS 
Sbjct: 295 RGPIPEYIGSMSELKTLDLSSNMLTGVIPDTFRNLDAFNFMFLNNNSLTGPVPQFIINSK 354

Query: 355 KNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHY 414
           +N+D+S NNFT   +  + C +  VNL+ SY S  +  + V  CLR+  PC  P D    
Sbjct: 355 ENLDLSDNNFTQPPT--LSCNQLDVNLISSYPSVTD--NSVQWCLREGLPC--PEDAKQS 408

Query: 415 TLHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNT 474
           +L INCGG+++  G   Y  D+ +RG S F S  + W +SS+G ++  +     Y+ T+ 
Sbjct: 409 SLFINCGGSRLKIGKDTYTDDLNSRGQSTFSSVSERWGYSSSGVWLGKED--AGYLATDR 466

Query: 475 STLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRI 534
             L  ++    E Y+TAR+SP SL YYGLCL  G+Y ++LHFAEI+F ND TFNSLG+RI
Sbjct: 467 FNL--INGSTPEYYKTARLSPQSLKYYGLCLRRGSYKLQLHFAEIMFSNDQTFNSLGRRI 524

Query: 535 FDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPA-EVTSHTLKIHLYWAGRGTTGIPLRGT 593
           FDIY+Q  L+++DFNI + AGG G P ++     +V   TL+IHL W G+GT  IP RG 
Sbjct: 525 FDIYVQGNLLERDFNIAERAGGVGKPFIRQIDGVQVNGSTLEIHLQWTGKGTNVIPTRGV 584

Query: 594 YGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGK-VSA 652
           YGPLISAI++  NFK        N   +   ++ A  +  LL+L I+R  G LGGK V  
Sbjct: 585 YGPLISAITITPNFKVDTGKPLSNGA-VAGIVIAACAVFGLLVLVILRLTGYLGGKEVDE 643

Query: 653 DKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           ++ELRGLDLQTG +TL+QIK ATNNFDP NK+GEGGFG VYK
Sbjct: 644 NEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYK 685

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2

 Score =  592 bits (1525), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 320/687 (46%), Positives = 435/687 (63%), Gaps = 25/687 (3%)

Query: 16  LLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDD 75
           ++FI L  F      + A  L  +EV+ L+ I RKL  +  N     C  +  W   ++ 
Sbjct: 14  IIFICLDIF-----GSNAQLLPEDEVQTLRTIFRKLQNQTVNIERTSCLDR-KWNFVAES 67

Query: 76  KKGF-ESNVTCDC---SSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS 131
                 SN+TCDC   +S+ C V  I L+  NL G +P E   L  L ++DL  N L+G+
Sbjct: 68  TSKLPTSNITCDCTFNASSVCRVTNIQLRGFNLRGIIPPEFGNLTRLTEIDLVLNFLSGT 127

Query: 132 FSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK 191
                + + L  L+V GNRLSGPFP  L  ITTL ++ +E NLFTG +PP++  L +L++
Sbjct: 128 IPTTLSQIPLEILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKR 187

Query: 192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251
           L++SSN+ TG +P  L+ L NL + RI  N+ SGKIP+FIG W ++ +L +QG+S+EGPI
Sbjct: 188 LLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPI 247

Query: 252 PASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIG-DMTKLK 309
           PASIS L +LT+LRI+DL+G  S FP L  M N++ L+L  CLI   IP+YIG  MT LK
Sbjct: 248 PASISNLKNLTELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLK 307

Query: 310 NIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESS 369
            +DLS N L G IP TF  L   NFMYL  N LTGPVP++I +S +N+D+S NNFT   +
Sbjct: 308 LLDLSSNMLNGTIPDTFRSLNAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQPPT 367

Query: 370 DPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGH 429
             + C +  VNL+ SY S  N  + V  CLR++ PC  P D +H +L INCGG ++    
Sbjct: 368 --LSCNQLDVNLISSYPSVTN--NSVQWCLRKDLPC--PGDAHHSSLFINCGGNRLKVDK 421

Query: 430 TKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYR 489
            +Y  D+  RGAS F S  + W +SS+G ++ +D     Y+ T+T  L  ++    E Y+
Sbjct: 422 DEYADDLNKRGASTFSSVSERWGYSSSGAWLGNDG--ATYLATDTFNL--INESTPEYYK 477

Query: 490 TARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFN 549
           TAR++  SL YYGLC+  G+Y V+L+FAEI+F ND T++SLG+R+FDIY+Q  L+++DFN
Sbjct: 478 TARLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFN 537

Query: 550 IEDEAGGTGIPIVKNF-PAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFK 608
           I   AGG G P ++     +V   TL+IHL W G+GT  IP RG YGPLISAI+V  NFK
Sbjct: 538 IAQRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFK 597

Query: 609 PPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGK-VSADKELRGLDLQTGLYT 667
                   N V +   ++ A V   LL+L I+R  G LGGK V  ++ELRGLDLQTG +T
Sbjct: 598 VDTGKPLSNGV-VAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFT 656

Query: 668 LRQIKAATNNFDPANKVGEGGFGSVYK 694
           L+QIK ATNNFDP NK+GEGGFG VYK
Sbjct: 657 LKQIKRATNNFDPENKIGEGGFGPVYK 683

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG7|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2

 Score =  516 bits (1328), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/668 (43%), Positives = 397/668 (59%), Gaps = 53/668 (7%)

Query: 31  ATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSA 90
           A++  L  +E +A K +   L K + +  VDPC      E+SS              +  
Sbjct: 22  ASSATLPTQEGEAFKVVLTTLKKTNIDLNVDPC------EVSS--------------TGN 61

Query: 91  TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNR 150
               ++  LK +NL G+LP EL  L  L+++DLSRN L GS  P+W  L LV + ++GNR
Sbjct: 62  EWSTISRNLKRENLQGSLPKELVGLPLLQEIDLSRNYLNGSIPPEWGVLPLVNIWLLGNR 121

Query: 151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL 210
           L+GP PK   NITTL +L +E N  +G +P ++  L N+Q++ILSSN+F GE+P+   KL
Sbjct: 122 LTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKL 181

Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK 270
           T L D R+SDN  SG IP+FI KW K+++L IQ S L GPIP +I++L  L DLRISDL 
Sbjct: 182 TTLRDFRVSDNQLSGTIPDFIQKWTKLERLFIQASGLVGPIPIAIASLVELKDLRISDLN 241

Query: 271 GSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL 329
           G ES FP+L  +  ++TLIL  C + G++PDY+G +T  K +DLSFN L+G IP T+  L
Sbjct: 242 GPESPFPQLRNIKKMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKLSGAIPNTYINL 301

Query: 330 AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPR 389
               ++Y TGN L G VP ++ N    +D+S NNF+ + ++ + C               
Sbjct: 302 RDGGYIYFTGNMLNGSVPDWMVNKGYKIDLSYNNFSVDPTNAV-C--------------- 345

Query: 390 NKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMFYSSGQ 449
            K + V  C+R N+ C    +     LHINCGG +++   T YE+D   R  S +Y S  
Sbjct: 346 -KYNNVLSCMR-NYQCPKTFN----ALHINCGGDEMSINGTIYESDKYDRLES-WYESRN 398

Query: 450 YWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGN 509
            W  ++ G F+DD    +    T  S  S+++ VD  LY  AR+S +SLTYY LCL NGN
Sbjct: 399 GWFSNNVGVFVDDKHVPERV--TIESNSSELNVVDFGLYTQARISAISLTYYALCLENGN 456

Query: 510 YTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEV 569
           Y V LHFAEI+F  ++ + SLG+R FDIYIQ KL  KDFNI  EA   G  ++K FP E+
Sbjct: 457 YNVNLHFAEIMFNGNNNYQSLGRRFFDIYIQRKLEVKDFNIAKEAKDVGNVVIKTFPVEI 516

Query: 570 TSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHV---MIMAAIV 626
               L+I LYWAGRGTT IP    YGPLISAISV S+  P    S +N +    +   +V
Sbjct: 517 KDGKLEIRLYWAGRGTTVIPKERVYGPLISAISVDSSVNP----SPRNGMSTGTLHTLVV 572

Query: 627 GASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGE 686
             S+ +V L+   +  KG L  K   +K+ + L+L    ++LRQIK ATNNFD AN++GE
Sbjct: 573 ILSIFIVFLVFGTLWKKGYLRSKSQMEKDFKSLELMIASFSLRQIKIATNNFDSANRIGE 632

Query: 687 GGFGSVYK 694
           GGFG VYK
Sbjct: 633 GGFGPVYK 640

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FXF2|RKF1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1

 Score =  510 bits (1314), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/690 (42%), Positives = 408/690 (59%), Gaps = 35/690 (5%)

Query: 20  SLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGF 79
           +++ F  Y++ A   KL  +EV AL+QI   LG K W F  + C  +    L+       
Sbjct: 28  AIICFKFYSVNAI--KLPQQEVDALQQIATTLGSKFWKFDAENCKIE-MVGLTETPPPTA 84

Query: 80  ESNVTCDCSSAT---CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQW 136
           +  + C+CS      CHVV  A K  NL GTLP ++ KL YL+++DL+ N + G+   +W
Sbjct: 85  KQEIECECSPTNDTDCHVVKFAFKDHNLPGTLP-QIVKLPYLREIDLAYNYINGTLPREW 143

Query: 137 ASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSS 196
           AS  L  +S++ NRLSG  PK   N ++L  L +E N F+G+IP ++  L++L+KL+LSS
Sbjct: 144 ASSNLTFISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSS 202

Query: 197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS 256
           N  TG LPA L +L N+ D RI+D   SG IP +I  WK++++L +  S L GPIP+ IS
Sbjct: 203 NKLTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVIS 262

Query: 257 ALTSLTDLRISDLKGSESAFPKLDKMN-LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSF 315
            L++L +LRISD++G    FP L  +  L  +IL  C I G+IP Y+  + +L+ +DLSF
Sbjct: 263 VLSNLVNLRISDIRGPVQPFPSLKNVTGLTKIILKNCNISGQIPTYLSHLKELETLDLSF 322

Query: 316 NNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIEC- 374
           N L GGIP+ F +     F+ L GN L G  P  +      VD+S NN  W+S +   C 
Sbjct: 323 NKLVGGIPS-FAQAENLRFIILAGNMLEGDAPDELLRDGITVDLSYNNLKWQSPESRACR 381

Query: 375 PRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTK--- 431
           P  ++NL    S+   K  K  PC++ +F C     +Y   LH+NCGG+ +     K   
Sbjct: 382 PNMNLNLNLFQSTSTKKSSKFLPCIK-DFKCP----RYSSCLHVNCGGSDMYVKEKKTKE 436

Query: 432 -YEAD--MEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELY 488
            YE D  +E   A  F      W FSSTG FMDD     N  +    T+   ++   +LY
Sbjct: 437 LYEGDGNVEGGAAKYFLKPDANWGFSSTGDFMDD-----NNFQNTRFTMFVPASNQSDLY 491

Query: 489 RTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDF 548
           ++AR++P+SLTY+  CL NGNYT+ L FAEI F ND  +N LG+R+FDIYIQEKLV KDF
Sbjct: 492 KSARIAPVSLTYFHACLENGNYTINLDFAEIRFTNDENYNRLGRRLFDIYIQEKLVAKDF 551

Query: 549 NIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFK 608
           NI DEA G   PI+K   A VT+H L I L WAG+GTT IP RG YGP+ISAIS+ S+ K
Sbjct: 552 NIMDEAKGAQTPIIKPLTAYVTNHFLTIRLSWAGKGTTRIPTRGVYGPIISAISIVSDSK 611

Query: 609 PPVVHSKKNHVMIMAAI---VGASVLLVLLILFIMRW-KGCLGGKVSADKELRGLDLQTG 664
           P      K  +   A I   +GA  L++ ++ F+  W  GCL       K+    +L +G
Sbjct: 612 P--CERPKTGMSPGAYIAIGIGAPCLIIFILGFL--WICGCLPRCGRQRKDPYEEELPSG 667

Query: 665 LYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
            +TLRQIK AT++F+P NK+GEGGFG+V+K
Sbjct: 668 TFTLRQIKFATDDFNPTNKIGEGGFGAVFK 697

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ASQ6|Y1972_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana GN=RFK1 PE=2 SV=3

 Score =  477 bits (1228), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/707 (41%), Positives = 401/707 (56%), Gaps = 38/707 (5%)

Query: 8   LKLLLASHLLFISLV--TFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNF-GVDPCS 64
           + ++L S  LF +++  +       A+ + LHA+E+ ALK+I   LG K  N    DPCS
Sbjct: 1   MSIILWSFFLFFTIILSSLTNITTLASFSSLHADELNALKEIATTLGIKRLNLRDEDPCS 60

Query: 65  QKGNWELSSDD---KKGFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYL 118
            K    +   D        + + CDCS   +  C +  +ALK  +L G LP EL+KL YL
Sbjct: 61  SKTLKIIQEVDFVPNLDINNTIGCDCSFNNNTICRITELALKTMSLRGKLPPELTKLPYL 120

Query: 119 KQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG 177
           K ++L RN L+G+   +WA +  L  +SV  N LSG  P  L N   L  L +EGN F+G
Sbjct: 121 KSIELCRNYLSGTIPMEWAKMAYLTSISVCANNLSGNLPAGLQNFKNLTFLGVEGNQFSG 180

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
            IP ++  L +L  L L+SN FTG LP  L +L NL  +RI DNNF+G IP +IG W ++
Sbjct: 181 PIPDELGNLTSLTGLELASNKFTGILPGTLARLVNLERVRICDNNFTGIIPAYIGNWTRL 240

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE 297
           QKLH+  S L GPIP ++  L +L +L +SD  G +S FP L    LK LIL    + G 
Sbjct: 241 QKLHLYASGLTGPIPDAVVRLENLLELSLSDTTGIKS-FPNLSSKGLKRLILRNVGLSGP 299

Query: 298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY-IFNSNKN 356
           IP YI ++T LK +DLSFN L G I    +   K   +YLTGN L+G +    + NS   
Sbjct: 300 IPSYIWNLTDLKILDLSFNKLNG-IVQGVQNPPKN--IYLTGNLLSGNIESGGLLNSQSY 356

Query: 357 VDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPAD--QYHY 414
           +D+S NNF+W SS    C +GS       S  +N L  + PC       + PA+  +Y  
Sbjct: 357 IDLSYNNFSWSSS----CQKGSTINTYQSSYSKNNLTGLPPC-------AVPANCKKYQR 405

Query: 415 TLHINCGGAKINT----GHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYI 470
            LHINCGG +++     G   Y+ D   +  +       YW  S+TG F DD++D D Y 
Sbjct: 406 FLHINCGGEEVSIRNSLGKITYQTDNSRQTNAASNQQFDYWGVSNTGDFTDDNSDHDEYY 465

Query: 471 RTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSL 530
            +   TLS       +LY+TAR S LSL YY  CL NGNY V+LHF EI F +   ++ L
Sbjct: 466 TSTNLTLSGDYP---DLYKTARRSALSLVYYAFCLENGNYNVKLHFMEIQFSDKEVYSRL 522

Query: 531 GKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPL 590
           G+RIFD+Y+Q KL  +DFNI  EA G   P++K   A VT+H L+I LYWAG+GTT IP 
Sbjct: 523 GRRIFDVYVQGKLFLRDFNINKEANGNMKPVIKEINATVTNHMLEIRLYWAGKGTTLIPK 582

Query: 591 RGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGAS---VLLVLLILFIMRWKGCLG 647
           RG YGPLISAIS+  + +P     K  H +    I+GAS   V +VLL + I        
Sbjct: 583 RGNYGPLISAISLCHSQEPLCGVEKTKHHIKYPLILGASGALVTIVLLAVGIYARGIYRR 642

Query: 648 GKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
                +++LR   LQT  ++ RQ++ ATNNFD ANK+GEGGFGSV+K
Sbjct: 643 DNNRRERDLRAQGLQTVCFSWRQLQTATNNFDQANKLGEGGFGSVFK 689

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2

 Score =  420 bits (1079), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/689 (36%), Positives = 381/689 (55%), Gaps = 31/689 (4%)

Query: 32  TANKLHAEEVKALKQI---GRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCS 88
           T    H +E +AL  I    +    ++WN   + CS         D    +   + CDCS
Sbjct: 33  TGATTHPDEARALNSIFAAWKIQAPREWNISGELCSGAAIDASVLDSNPAYNPLIKCDCS 92

Query: 89  ---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELS 145
              S  C +  I + A ++ G +P EL  L YL  L+L +N LTGS  P   +L  ++  
Sbjct: 93  FQNSTICRITNIKVYAIDVVGPIPPELWTLTYLTNLNLGQNVLTGSLPPAIGNLTRMQWM 152

Query: 146 VMG-NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELP 204
             G N LSGP PK +  +T L+ L I  N F+GSIP +I +   LQ++ + S+  +G +P
Sbjct: 153 TFGINALSGPVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIP 212

Query: 205 AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL 264
                L  L    I+D   + +IP+FIG W K+  L I G+ L GPIP+S S LTSLT+L
Sbjct: 213 LSFANLVQLEQAWIADLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTEL 272

Query: 265 RISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323
           R+ D+    S+   +  M +L  L+L    + G IP  IG+ + L+ +DLSFN L G IP
Sbjct: 273 RLGDISSGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIP 332

Query: 324 TTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVE 383
            +   L++   ++L  N L G  P     S +NVD+S N+ +      +  P   +NLV 
Sbjct: 333 ASLFNLSQLTHLFLGNNTLNGSFPTQKTQSLRNVDVSYNDLSGSLPSWVSLPSLKLNLVA 392

Query: 384 SYSSPRNKLDKVHP---CLRQNFPCSAPADQYHYTLHINCGGAKIN--TGHTKYEADMEA 438
           +  +     ++V P   CL++NFPC+     Y     INCGG +    TG      D + 
Sbjct: 393 NNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYS-DFSINCGGPEKRSVTGALFEREDEDF 451

Query: 439 RGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSL 498
             AS F S+GQ WA SS G F     ++  YI T+ S    V+ +D EL+++AR+S  S+
Sbjct: 452 GPASFFVSAGQRWAASSVGLFAGSSNNI--YIATSQSQF--VNTLDSELFQSARLSASSV 507

Query: 499 TYYGLCLGNGNYTVRLHFAE--IIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGG 556
            YYGL L NG YTV L FAE  I+    +T+  LG+R FDIY+Q +LV+KDF++   AG 
Sbjct: 508 RYYGLGLENGGYTVTLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGD 567

Query: 557 TGIPIVKN-FPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVH-- 613
           + +  V+  + A V+ + L++HL+WAG+GT  IP++G YGPLISA+S   +F P V +  
Sbjct: 568 STVRAVQRVYKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKP 627

Query: 614 ---SKKNHVMIMAAIVGASVLLVL--LILFIMRWKGCLGGKVSADKELRGLDLQTGLYTL 668
               K     I+  IVG  +L +L  +++F +R +     + + D+EL G+D++  ++T 
Sbjct: 628 PSKGKNRTGTIVGVIVGVGLLSILAGVVMFTIRKR---RKRYTDDEELLGMDVKPYIFTY 684

Query: 669 RQIKAATNNFDPANKVGEGGFGSVYKVNV 697
            ++K+AT +FDP+NK+GEGGFG VYK N+
Sbjct: 685 SELKSATQDFDPSNKLGEGGFGPVYKGNL 713

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH3|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 383/709 (54%), Gaps = 40/709 (5%)

Query: 16  LLFISLVTFFG--YAIAA---TANKLHAEEVKALKQI---GRKLGKKDWNFGVDPCSQKG 67
           LL +  +  FG  Y + A   T    H +E  AL  I    R    ++WN   + CS   
Sbjct: 11  LLTVWFLCNFGPVYVVRAQNRTGATTHPDEALALNSIFAAWRIRAPREWNISGELCSGAA 70

Query: 68  NWELSSDDKKGFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLS 124
                 D    +   + CDCS   S  C +  I + A  + G++P +L  L YL  L+L 
Sbjct: 71  IDASVLDSNPAYNPLIKCDCSFENSTICRITNIKVYAMEVVGSIPQQLWTLEYLTNLNLG 130

Query: 125 RNCLTGSFSPQWASLQLVELSVMG-NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI 183
           +N LTGS  P   +L  +     G N LSGP PK +  +T L+ LSI  N F+GSIP +I
Sbjct: 131 QNVLTGSLPPALGNLTRMRWMTFGINALSGPIPKEIGLLTDLRLLSISSNNFSGSIPDEI 190

Query: 184 RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243
            +   LQ++ + S+  +G LP     L  L    I+D   +G+IP+FIG W K+  L I 
Sbjct: 191 GRCTKLQQIYIDSSGLSGGLPVSFANLVELEQAWIADMELTGQIPDFIGDWTKLTTLRIL 250

Query: 244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYI 302
           G+ L GPIPAS S LTSLT+LR+ D+    S+   +  M +L  L+L    + G IP  I
Sbjct: 251 GTGLSGPIPASFSNLTSLTELRLGDISNGNSSLEFIKDMKSLSILVLRNNNLTGTIPSNI 310

Query: 303 GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLN 362
           G+ + L+ +DLSFN L G IP +   L +   ++L  N L G +P     S  NVD+S N
Sbjct: 311 GEYSSLRQLDLSFNKLHGTIPASLFNLRQLTHLFLGNNTLNGSLPTQKGQSLSNVDVSYN 370

Query: 363 NF-----TWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLH 417
           +      +W S   +     + N   +     N++     CL++NFPC+     Y     
Sbjct: 371 DLSGSLPSWVSLPNLNLNLVANNF--TLEGLDNRVLSGLNCLQKNFPCNRGKGIYS-DFS 427

Query: 418 INCGGAKINT-GHTKYEADMEARG-ASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTS 475
           INCGG +I +     +E + E  G AS   S+GQ WA SS G F     ++  YI T+ S
Sbjct: 428 INCGGPEIRSVTEAVFEREDEDLGPASFVVSAGQRWAASSVGLFAGSSNNI--YISTSQS 485

Query: 476 TLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAE--IIFKNDSTFNSLGKR 533
               V+ +D EL+++AR+S  SL YYGL L NG YTV L FAE  I+    +T+  LG+R
Sbjct: 486 QF--VNTLDSELFQSARLSASSLRYYGLGLENGGYTVTLQFAEIQILGSTSNTWRGLGRR 543

Query: 534 IFDIYIQEKLVKKDFNIEDEAGGTGIPIV-KNFPAEVTSHTLKIHLYWAGRGTTGIPLRG 592
            FDIY+Q +LV+KDF++   AG + +  V + + A V+ + L+IHL+WAG+GT  IP++G
Sbjct: 544 RFDIYVQGRLVEKDFDVRRTAGDSTVRAVQREYKANVSQNHLEIHLFWAGKGTCCIPIQG 603

Query: 593 TYGPLISAISVKSNFKP-----PVVHSKKNHVMIMAAIVGASVLLVL--LILFIMRWKGC 645
            YGPLISA+    +F P     P    K     I+  IVG  +L ++  +++FI+R +  
Sbjct: 604 AYGPLISAVGATPDFTPTVGNRPPSKGKSMTGTIVGVIVGVGLLSIISGVVIFIIRKR-- 661

Query: 646 LGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
              + + D+E+  +D++   +T  ++K+AT +FDP+NK+GEGGFG VYK
Sbjct: 662 -RKRYTDDEEILSMDVKPYTFTYSELKSATQDFDPSNKLGEGGFGPVYK 709

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  149 bits (376), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 146/275 (53%), Gaps = 25/275 (9%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV 158
           ++  +LTG++P  +      + LDLS N LTG        LQ+  LS+ GN+LSG  P V
Sbjct: 219 VRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSV 278

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
           +  +  L  L + GNL +GSIPP +  L   +KL L SN  TG +P EL  ++ L+ L +
Sbjct: 279 IGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLEL 338

Query: 219 SDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES---A 275
           +DN+ +G IP  +GK   +  L++  + LEGPIP  +S+ T+L  L +   K S +   A
Sbjct: 339 NDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRA 398

Query: 276 FPKLDKM----------------------NLKTLILTKCLIHGEIPDYIGDMTKLKNIDL 313
           F KL+ M                      NL TL L+   I+G IP  +GD+  L  ++L
Sbjct: 399 FQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNL 458

Query: 314 SFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK 348
           S N++TG +P  F  L     + L+ N ++GP+P+
Sbjct: 459 SRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPE 493

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	700
302143484	1011	unnamed protein product [Vitis vinifera]	0.971	0.672	0.686	0.0
449444971	1028	PREDICTED: probable LRR receptor-like se	0.964	0.656	0.675	0.0
224080095	977	predicted protein [Populus trichocarpa]	0.931	0.667	0.674	0.0
359485473	999	PREDICTED: probable LRR receptor-like se	0.945	0.662	0.665	0.0
255584521	941	conserved hypothetical protein [Ricinus	0.847	0.630	0.732	0.0
356501491	1025	PREDICTED: probable LRR receptor-like se	0.977	0.667	0.632	0.0
357494365	1039	BED finger-nbs resistance protein [Medic	0.962	0.648	0.625	0.0
345651730	1027	rfls6 protein [Glycine max]	0.971	0.662	0.620	0.0
317106662	927	JHL10I11.12 [Jatropha curcas]	0.824	0.622	0.718	0.0
297849060	1012	hypothetical protein ARALYDRAFT_470791 [	0.952	0.659	0.606	0.0

>gi|302143484|emb|CBI22045.3| unnamed protein product [Vitis vinifera]

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/688 (68%), Positives = 559/688 (81%), Gaps = 8/688 (1%)

Query: 12  LASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWEL 71
           + +  + +  V F  + +   + KL A+E+KALK IG +LGK+DW+FG DPCS +GNW  
Sbjct: 1   MGAEPIIVFSVLFIFFTVPGFSAKLPADELKALKVIGTRLGKRDWDFGKDPCSGEGNWS- 59

Query: 72  SSDDKKGFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCL 128
           S ++KKG ES+VTCDC+   +A+CHVVTIALKAQNL+G+LP ELSKL +LK LDLSRN  
Sbjct: 60  SVNEKKGVESSVTCDCTFHHNASCHVVTIALKAQNLSGSLPPELSKLYHLKHLDLSRNLF 119

Query: 129 TGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLIN 188
           +GS   QWA+++LVELS+MGNRLSGPFPKVLTNITTL+NLSIEGNLF+G IPP+I KLI 
Sbjct: 120 SGSIPSQWATMRLVELSLMGNRLSGPFPKVLTNITTLRNLSIEGNLFSGPIPPEIGKLIR 179

Query: 189 LQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248
           ++K++LSSN+FTGELP  L KLTNL D+RI+DN+FSG+IPEFIG W  +QKLHIQGSSLE
Sbjct: 180 IEKMVLSSNAFTGELPVALAKLTNLTDMRINDNHFSGRIPEFIGNWTHVQKLHIQGSSLE 239

Query: 249 GPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTK 307
           GPIP+SISALTSL+DLRISDLKG  S FP L  + +LKTL+L KCLIHGEIP+YIGDM K
Sbjct: 240 GPIPSSISALTSLSDLRISDLKGRGSTFPPLSTIESLKTLVLRKCLIHGEIPEYIGDMKK 299

Query: 308 LKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWE 367
           LK++DLSFN L G IPT+F++LAKT+FMYLTGN LTG +P +I  +NKN D+S NNFTW+
Sbjct: 300 LKHLDLSFNELAGEIPTSFQELAKTDFMYLTGNMLTGHIPDWILGTNKNFDLSYNNFTWD 359

Query: 368 SSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKIN- 426
           SS P+ECPRGSVNLVESYSS   +      CL+QNFPCSA ++QYHY+LHINCGG + + 
Sbjct: 360 SSSPVECPRGSVNLVESYSSSSVRRSIHS-CLKQNFPCSASSNQYHYSLHINCGGKETSI 418

Query: 427 TGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLE 486
            G TKYEAD+E  GASMFY  GQ WAFSSTG FMD+D D D YI  NTS+LS VS +D+E
Sbjct: 419 NGSTKYEADLEPTGASMFYL-GQNWAFSSTGNFMDNDVDGDAYIEANTSSLSNVSVLDVE 477

Query: 487 LYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKK 546
           LY+ ARVSPLSLTYYGLCLGNGNYTV+LHFAEIIF ND +FNSLG+RIFD+YIQ KLV K
Sbjct: 478 LYKKARVSPLSLTYYGLCLGNGNYTVKLHFAEIIFINDKSFNSLGERIFDVYIQGKLVLK 537

Query: 547 DFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSN 606
           DFNIE EAGGTG PI+KNF AEVTSHTLK+  YWAGRGTTGIPLRG YGPLISAISV  N
Sbjct: 538 DFNIEKEAGGTGKPIIKNFTAEVTSHTLKVQFYWAGRGTTGIPLRGFYGPLISAISVDPN 597

Query: 607 FKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLY 666
           F+PP    K   + I+      +V+LVLL L I+  KG LGGK S DKELRGLDLQTGL+
Sbjct: 598 FEPPSPPGKNWDIKIVVGAAAVAVVLVLLTLGILWRKGWLGGKTSEDKELRGLDLQTGLF 657

Query: 667 TLRQIKAATNNFDPANKVGEGGFGSVYK 694
           TLRQIKAAT NFD  NK+GEGGFG+V+K
Sbjct: 658 TLRQIKAATKNFDAENKLGEGGFGAVFK 685

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444971|ref|XP_004140247.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650-like [Cucumis sativus] gi|449481221|ref|XP_004156118.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650-like [Cucumis sativus]

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/685 (67%), Positives = 547/685 (79%), Gaps = 10/685 (1%)

Query: 15  HLLF-ISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSS 73
           H  + I L+ F  + +AA A KLH EEVKALK+I +KLGK DW+F +DPCS +G W +  
Sbjct: 17  HFFYAILLLQFATFGLAAAA-KLHREEVKALKEIEKKLGKNDWDFNIDPCSGEGKWHVV- 74

Query: 74  DDKKGFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTG 130
           + +KGFES+VTCDCS   ++TCH+V IALK+QNL+G +P E SKLR+LKQLDLSRNCLTG
Sbjct: 75  NGRKGFESSVTCDCSFNHNSTCHIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTG 134

Query: 131 SFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ 190
               QWA+++LVELS MGN+LSGPFPKVLTNITTL+NLSIEGN F+G IPP+I KL+NL+
Sbjct: 135 FVPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEIGKLVNLE 194

Query: 191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250
           KL+LSSN  TGELP  L KL+NL D+RISDNNFSGKIPEFI  W +I+KLHIQG SLEGP
Sbjct: 195 KLVLSSNGLTGELPKGLAKLSNLTDMRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGP 254

Query: 251 IPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLK 309
           IP SIS +TSLTDLRISDLKG  S FP L  + ++KTLIL KC I GEIP YIGDM KLK
Sbjct: 255 IPLSISTMTSLTDLRISDLKGGRSPFPPLSNIKSMKTLILRKCFIFGEIPKYIGDMKKLK 314

Query: 310 NIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESS 369
           N+DLS+N+LTG +P TFE+L K ++++LT NKL G +P +I  SNKNVD+S NNFTWE+S
Sbjct: 315 NLDLSYNDLTGEVPATFERLDKIDYIFLTANKLNGIIPGWILGSNKNVDLSNNNFTWENS 374

Query: 370 DPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGH 429
            P ECPRGSVNLVE+YS    KL ++HPCL++NFPCSA  +++HY+L INCGG + +   
Sbjct: 375 SPAECPRGSVNLVETYSPSAEKLTRIHPCLKRNFPCSASREEHHYSLRINCGGKETSIRG 434

Query: 430 TKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYR 489
            +YEAD E  GASMFY+ GQ WAFSSTG FMD+D D DNYI TNTS LS VSA   ELY 
Sbjct: 435 ERYEADRE--GASMFYT-GQNWAFSSTGSFMDNDVDADNYIVTNTSALSNVSATYSELYT 491

Query: 490 TARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFN 549
            AR SP SLTYYGLCL NGNYTV+LHFAEI+F NDS+FNSLG+R+FD+YIQEKLV KDF+
Sbjct: 492 KARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFD 551

Query: 550 IEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKP 609
           IE EAGGTG PI+K     VTSHTLKIH YWAGRGTTGIPLRG YGPLISAISV  NF P
Sbjct: 552 IEHEAGGTGKPIIKKITVAVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTP 611

Query: 610 PVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLR 669
           P  H KK+  +I+     A+ +L+LL+L IMR KG LGGK S  KELRG+DLQTGL+T+R
Sbjct: 612 PKNHGKKDFTIIIIGTAAAAFVLLLLVLCIMRRKGWLGGKASVYKELRGIDLQTGLFTIR 671

Query: 670 QIKAATNNFDPANKVGEGGFGSVYK 694
           QIKAAT NFD ANKVGEGGFG+VYK
Sbjct: 672 QIKAATKNFDAANKVGEGGFGAVYK 696

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080095|ref|XP_002306015.1| predicted protein [Populus trichocarpa] gi|222848979|gb|EEE86526.1| predicted protein [Populus trichocarpa]

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/660 (67%), Positives = 529/660 (80%), Gaps = 8/660 (1%)

Query: 41  VKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCS---SATCHVVTI 97
           V+ L++IG+KLGKKDW+F  DPCS +GNW +  D++KGFE++VTCDCS   +++CH+V+I
Sbjct: 1   VRVLREIGKKLGKKDWDFNKDPCSGEGNWSIL-DERKGFENSVTCDCSFNNNSSCHLVSI 59

Query: 98  ALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPK 157
           ALK+QNL+G +P E SK RYLKQLDLSRN  TG   PQW +L+L E SVMGNRLSGPFPK
Sbjct: 60  ALKSQNLSGIIPPEFSKFRYLKQLDLSRNLFTGVIPPQWGTLRLEEFSVMGNRLSGPFPK 119

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
           VLTN+TTL+NLSIEGN F+G IPP+I +LINLQKL+ SSN+ TG LPAEL KL NL D+R
Sbjct: 120 VLTNMTTLRNLSIEGNHFSGPIPPEIGRLINLQKLVFSSNALTGNLPAELGKLVNLTDVR 179

Query: 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP 277
           I+DNNFSGK+P FI KW K+QKLH+QG+SL+GPIP+SI++LT L+DLRISDL G  S FP
Sbjct: 180 INDNNFSGKLPTFISKWTKVQKLHLQGTSLKGPIPSSIASLTKLSDLRISDLTGRGSPFP 239

Query: 278 KLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMY 336
            L  M ++KTLIL  CLI+GEIP+Y+G M KLK++D+SFNNL G IP+TF +LA+ +F+Y
Sbjct: 240 PLSDMESMKTLILRNCLIYGEIPEYVGQMEKLKHLDVSFNNLRGEIPSTFIQLARIDFLY 299

Query: 337 LTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH 396
           LTGNKLTG VP ++   NKNVD+S NNFTW+SS P EC RGSVN+VES+S P     K H
Sbjct: 300 LTGNKLTGSVPPWLLERNKNVDLSYNNFTWQSSSPDECARGSVNIVESFS-PSTIKSKAH 358

Query: 397 PCLRQNFPCSAPADQYHYTLHINCGGAKINT-GHTKYEADMEARGASMFYSS-GQYWAFS 454
            CL+QNFPCSA  +Q HYTLHINCGG +I   G+T Y+ D E RGASMFYS   Q WAFS
Sbjct: 359 SCLKQNFPCSASRNQQHYTLHINCGGNEITVDGNTTYQDDKEPRGASMFYSHPSQEWAFS 418

Query: 455 STGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRL 514
           STG FMDDD++ D Y +TN S +S VSA   +LY TARVSPLSLTYYGLCL NGNYTV+L
Sbjct: 419 STGNFMDDDSEADAYTKTNKSAISNVSATIAQLYTTARVSPLSLTYYGLCLMNGNYTVKL 478

Query: 515 HFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTL 574
           HFAEIIF NDS+  SLGKRIFD+YIQ KLV KDFNIEDEAGG  IP+VK F A VT +TL
Sbjct: 479 HFAEIIFTNDSSLTSLGKRIFDVYIQGKLVLKDFNIEDEAGGVAIPLVKTFIAAVTHNTL 538

Query: 575 KIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVL 634
           KI LYWAGRGTTGIPLRG YGPLISAISV  NFKPP   SK+N V+I+   V  ++ L  
Sbjct: 539 KIRLYWAGRGTTGIPLRGIYGPLISAISVDPNFKPPSNGSKRNVVIIVTGAVAGAIFLAF 598

Query: 635 LILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           L+L +M   G L GK +ADKEL+GLDLQTGL+TLRQ+KAATNNFD  NKVGEGGFGSVYK
Sbjct: 599 LVLGVMWRNGWLCGKAAADKELKGLDLQTGLFTLRQMKAATNNFDAENKVGEGGFGSVYK 658

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485473|ref|XP_002278131.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Vitis vinifera]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/694 (66%), Positives = 548/694 (78%), Gaps = 32/694 (4%)

Query: 12  LASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWEL 71
           + +  + +  V F  + +   + KL A+E+KALK IG +LGK+DW+FG DPCS +GNW  
Sbjct: 1   MGAEPIIVFSVLFIFFTVPGFSAKLPADELKALKVIGTRLGKRDWDFGKDPCSGEGNWS- 59

Query: 72  SSDDKKGFESNVTCDCS---SATCHVVTI------ALKAQNLTGTLPTELSKLRYLKQLD 122
           S ++KKG ES+VTCDC+   +A+CHVVT+      ALKAQNL+G+LP ELSKL +LK LD
Sbjct: 60  SVNEKKGVESSVTCDCTFHHNASCHVVTMVYVNCRALKAQNLSGSLPPELSKLYHLKHLD 119

Query: 123 LSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD 182
           LSRN  +GS   QWA+++LVELS+MGNRLSGPFPKVLTNITTL+NLSIEGNLF+G IPP+
Sbjct: 120 LSRNLFSGSIPSQWATMRLVELSLMGNRLSGPFPKVLTNITTLRNLSIEGNLFSGPIPPE 179

Query: 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI 242
           I KLI ++K++LSSN+FTGELP  L KLTNL D+RI+DN+FSG+IPEFIG W  +QKLHI
Sbjct: 180 IGKLIRIEKMVLSSNAFTGELPVALAKLTNLTDMRINDNHFSGRIPEFIGNWTHVQKLHI 239

Query: 243 QGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDY 301
           QGSSLEGPIP+SISALTSL+DLRISDLKG  S FP L  + +LKTL+L KCLIHGEIP+Y
Sbjct: 240 QGSSLEGPIPSSISALTSLSDLRISDLKGRGSTFPPLSTIESLKTLVLRKCLIHGEIPEY 299

Query: 302 IGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISL 361
           IGDM KLK++DLSFN L G IPT+F++LAKT+FMYLTGN LTG +P +I  +NKN D+S 
Sbjct: 300 IGDMKKLKHLDLSFNELAGEIPTSFQELAKTDFMYLTGNMLTGHIPDWILGTNKNFDLSY 359

Query: 362 NNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCG 421
           NNFTW+SS P+ECPRGSVNLVESYSS           +R+N          HY+LHINCG
Sbjct: 360 NNFTWDSSSPVECPRGSVNLVESYSSS---------SVRRN----------HYSLHINCG 400

Query: 422 GAKIN-TGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKV 480
           G + +  G TKYEAD+E  GASMFY  GQ WAFSSTG FMD+D D D YI  NTS+LS V
Sbjct: 401 GKETSINGSTKYEADLEPTGASMFYL-GQNWAFSSTGNFMDNDVDGDAYIEANTSSLSNV 459

Query: 481 SAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQ 540
           S +D+ELY+ ARVSPLSLTYYGLCLGNGNYTV+LHFAEIIF ND +FNSLG+RIFD+YIQ
Sbjct: 460 SVLDVELYKKARVSPLSLTYYGLCLGNGNYTVKLHFAEIIFINDKSFNSLGERIFDVYIQ 519

Query: 541 EKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISA 600
            KLV KDFNIE EAGGTG PI+KNF AEVTSHTLK+  YWAGRGTTGIPLRG YGPLISA
Sbjct: 520 GKLVLKDFNIEKEAGGTGKPIIKNFTAEVTSHTLKVQFYWAGRGTTGIPLRGFYGPLISA 579

Query: 601 ISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLD 660
           ISV  NF+PP    K   + I+      +V+LVLL L I+  KG LGGK S DKELRGLD
Sbjct: 580 ISVDPNFEPPSPPGKNWDIKIVVGAAAVAVVLVLLTLGILWRKGWLGGKTSEDKELRGLD 639

Query: 661 LQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           LQTGL+TLRQIKAAT NFD  NK+GEGGFG+V+K
Sbjct: 640 LQTGLFTLRQIKAATKNFDAENKLGEGGFGAVFK 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584521|ref|XP_002532988.1| conserved hypothetical protein [Ricinus communis] gi|223527234|gb|EEF29396.1| conserved hypothetical protein [Ricinus communis]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/599 (73%), Positives = 504/599 (84%), Gaps = 6/599 (1%)

Query: 98  ALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPK 157
           ALK+QNL+G +P + SKL Y++ LDLSRNCLTGS   QWA+++LV+LS MGN+LSGPFPK
Sbjct: 6   ALKSQNLSGIVPPDFSKLHYIELLDLSRNCLTGSIPSQWATMRLVDLSFMGNQLSGPFPK 65

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
            LTNITTLKNLSIEGN F+G IPP+I KLINL+KL LSSN+FTG+LP EL KL NL D+R
Sbjct: 66  ALTNITTLKNLSIEGNNFSGPIPPEIGKLINLEKLTLSSNAFTGKLPRELAKLVNLTDMR 125

Query: 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP 277
           ISD NFSG+IP+FI +WK+IQKLHIQGSSLEGPIP+SIS LT L+DLRISDLKG  S+FP
Sbjct: 126 ISDANFSGQIPDFISRWKQIQKLHIQGSSLEGPIPSSISGLTRLSDLRISDLKGQSSSFP 185

Query: 278 KLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMY 336
            LD M ++KTLIL KCL+ G+IP+YIG M KLKN+DLSFNNLTG IP TF  LAK +FMY
Sbjct: 186 HLDNMESMKTLILRKCLLSGKIPEYIGHMKKLKNLDLSFNNLTGEIPATFSHLAKVDFMY 245

Query: 337 LTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH 396
           LTGNKLTGP+P+++   NKNVDIS NNFTW+SS  IECPRGSVNLVESYSS  NKL KVH
Sbjct: 246 LTGNKLTGPIPEWVLERNKNVDISDNNFTWDSSSQIECPRGSVNLVESYSSSTNKLSKVH 305

Query: 397 PCLRQNFPCSAPADQYHYTLHINCGGAKINTG-HTKYEADMEARGASMFYSSGQYWAFSS 455
            CL+QNFPCS+  +  +Y LHINCGG +I  G +  Y AD+EARGASM+YSS Q WAFSS
Sbjct: 306 SCLKQNFPCSSKPN--NYALHINCGGKEIIAGSNITYNADLEARGASMYYSS-QNWAFSS 362

Query: 456 TGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLH 515
           TG FMD+D D D YI+ NTS +S VSA+D +LY+TARVSPLSL+YYGLCL NGNYTV+LH
Sbjct: 363 TGNFMDNDIDADPYIQINTSAISNVSALDAQLYKTARVSPLSLSYYGLCLINGNYTVKLH 422

Query: 516 FAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLK 575
           FAEI+F +D+TFNSLGKRIFD+YIQEKLV KDFNI +EAGGTG PIVK F   VTSHTLK
Sbjct: 423 FAEIVFTDDNTFNSLGKRIFDVYIQEKLVLKDFNIAEEAGGTGRPIVKMFTVAVTSHTLK 482

Query: 576 IHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLL 635
           IH YWAGRGTTGIP+RG YGPLISAISV  NFKPP  + KKN V+I+A  V A+V LVLL
Sbjct: 483 IHFYWAGRGTTGIPVRGIYGPLISAISVDPNFKPPSDNDKKN-VIIVATTVSAAVFLVLL 541

Query: 636 ILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           IL IM  KGCLG  VSADKELRGLDLQTG++TLRQIKAAT NFDPANK+GEGGFGSVYK
Sbjct: 542 ILGIMWRKGCLGDNVSADKELRGLDLQTGIFTLRQIKAATKNFDPANKLGEGGFGSVYK 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501491|ref|XP_003519558.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650-like [Glycine max]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/691 (63%), Positives = 541/691 (78%), Gaps = 7/691 (1%)

Query: 9   KLLLASHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGN 68
           K+L    L   SL+ FF    +A   KL+ +EVKALK+IG K+GKKDW+FGVDPCS KGN
Sbjct: 9   KMLFLLLLGSTSLIFFFPQLASAATPKLNTQEVKALKEIGSKIGKKDWDFGVDPCSGKGN 68

Query: 69  WELSSDDKKGFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSR 125
           W +S D +KGFES+V CDCS   +++CHVV+I+LKAQNL+G+L  + SKL +L++LDLSR
Sbjct: 69  WNVS-DARKGFESSVICDCSFDHNSSCHVVSISLKAQNLSGSLSPDFSKLHHLQELDLSR 127

Query: 126 NCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK 185
           N +TG+  PQW +++LVELS MGN+LSGPFPKVLTNITTL+NLSIEGN F+G IP +I K
Sbjct: 128 NIITGAIPPQWGTMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGHIPTEIGK 187

Query: 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS 245
           L NL+KLILSSN FTG LP  L+KLT L DLRISDNNF GKIP+FI  W  I+KLH+ G 
Sbjct: 188 LTNLEKLILSSNGFTGALPPTLSKLTKLIDLRISDNNFFGKIPDFISNWTLIEKLHMHGC 247

Query: 246 SLEGPIPASISALTSLTDLRISDLKGSES-AFPKLDKM-NLKTLILTKCLIHGEIPDYIG 303
           SLEGPIP+SISALT L+DLRI+DLKGS+S AFP L+ + ++KTL+L KC+I GEIP YIG
Sbjct: 248 SLEGPIPSSISALTRLSDLRIADLKGSKSSAFPPLNNLKSMKTLVLRKCMIKGEIPAYIG 307

Query: 304 DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363
            M KLK +DLS+N L+G IP +F +L K +FMYLTGNKL+G +P ++  +NKN+DIS NN
Sbjct: 308 RMEKLKILDLSYNGLSGEIPESFAQLDKVDFMYLTGNKLSGIIPGWVLANNKNIDISDNN 367

Query: 364 FTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGA 423
           F+W+SS P ECPRGS+NLVESYSS  N  +K+H CL++NFPC++  ++YHY+++INCGG 
Sbjct: 368 FSWDSSSPTECPRGSINLVESYSSSVNTQNKIHSCLKRNFPCTSSVNKYHYSMNINCGGN 427

Query: 424 KINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAV 483
           + N     YEAD E +GA+M Y +GQ WA SSTG FMD+D D D Y+  NTS L+ VSA+
Sbjct: 428 EANISGQIYEADREQKGAAMLYYTGQDWALSSTGNFMDNDIDSDPYVVANTSRLN-VSAL 486

Query: 484 DLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKL 543
           + +LY TARVSPL+LTYYGLCL NGNYTV+LHFAEIIF ND +  SLG+R+FD+YIQ  L
Sbjct: 487 NSQLYTTARVSPLALTYYGLCLINGNYTVKLHFAEIIFINDRSLYSLGRRVFDVYIQGNL 546

Query: 544 VKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISV 603
           V KDF+I+ EAGGTG PIVK   A VT HTL+IH YWAG+GTTGIP RG YGPLISAISV
Sbjct: 547 VLKDFDIQREAGGTGKPIVKTLNASVTQHTLEIHFYWAGKGTTGIPTRGVYGPLISAISV 606

Query: 604 KSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQT 663
             NFKPP    K+ + M+   IV   +++VLL+L +MR  G LGGK    KELRG+DLQT
Sbjct: 607 NPNFKPPSGDGKRTYFMLAIGIVAGVLVVVLLVLVLMRRMGWLGGKDPVYKELRGIDLQT 666

Query: 664 GLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           GL+TLRQIKAAT NFD  NK+GEGGFG V+K
Sbjct: 667 GLFTLRQIKAATKNFDAENKIGEGGFGCVFK 697

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494365|ref|XP_003617471.1| BED finger-nbs resistance protein [Medicago truncatula] gi|355518806|gb|AET00430.1| BED finger-nbs resistance protein [Medicago truncatula]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/700 (62%), Positives = 527/700 (75%), Gaps = 26/700 (3%)

Query: 18  FISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKK 77
           F SL+    +A AAT  KL+ +EVKALK+IG K+GKKDW+FGVDPCS KG W +S D +K
Sbjct: 14  FTSLIFISHFASAATL-KLNTQEVKALKEIGNKIGKKDWDFGVDPCSGKGKWNVS-DSRK 71

Query: 78  GFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP 134
           GFES V C+CS   +++CHVV+I LKAQNL+GTL  E SKL +LK LDLSRN +TGS   
Sbjct: 72  GFESAVICNCSFNHNSSCHVVSIFLKAQNLSGTLSPEFSKLPHLKILDLSRNIITGSIPQ 131

Query: 135 QWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLIL 194
           QWA + LV+LS MGNR SGPFP VLTNITTLKNLSIEGN F+G IP DI KLINL+KL+L
Sbjct: 132 QWAKMNLVDLSFMGNRFSGPFPTVLTNITTLKNLSIEGNQFSGFIPEDIGKLINLEKLVL 191

Query: 195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPAS 254
            SN FTG LP+  +KLT LNDLRISDN+FSGKIP+FI KW  I+KLHI+G SLEGPIP+S
Sbjct: 192 QSNRFTGALPSAFSKLTKLNDLRISDNDFSGKIPDFISKWTLIEKLHIEGCSLEGPIPSS 251

Query: 255 ISALTSLTDLRISDLKGSESA-FPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNID 312
           ISALT L+DLRI+DL+GS S+ FP L  M ++KTL+L KCLI GEIP+YIG+M KLK +D
Sbjct: 252 ISALTVLSDLRITDLRGSRSSTFPPLSNMKSMKTLVLRKCLIKGEIPEYIGEMAKLKVLD 311

Query: 313 LSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI 372
           LSFN+L+G IP +F  L K +FMYLT N L+G +P ++  +NKN+D+S NNF WESS P 
Sbjct: 312 LSFNSLSGKIPESFRDLDKVDFMYLTRNNLSGTIPDWVLKNNKNIDVSYNNFEWESSSPT 371

Query: 373 ECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKY 432
           EC RGSVNLVESYS    K   +H CL++NFPC++  +  HY+L INCGG + N     Y
Sbjct: 372 ECQRGSVNLVESYSLSATKKSNIHSCLKRNFPCTS-KNPRHYSLRINCGGNEANVSGNIY 430

Query: 433 EADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTAR 492
            AD+E +GASM Y S + WA SSTG FMD+D D D YI TNTS+L  VS ++ +LY TAR
Sbjct: 431 TADIERKGASMLYISAEDWALSSTGSFMDNDIDSDPYIVTNTSSLQNVSVINSKLYTTAR 490

Query: 493 VSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIED 552
           VSPLSLTYYGLC+ NGNYTV+LHFAEIIF ND + NSLG+RIFD+YIQ KLV +DF+IE 
Sbjct: 491 VSPLSLTYYGLCMINGNYTVQLHFAEIIFINDRSLNSLGRRIFDVYIQGKLVLRDFDIER 550

Query: 553 EAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVV 612
           EAGG   PIVK F A VT +TLKI  YWAG+GTTGIP RG YGPL+SAISV  NFKPP  
Sbjct: 551 EAGGAEKPIVKKFNATVTENTLKIQFYWAGKGTTGIPTRGVYGPLVSAISVDPNFKPPSE 610

Query: 613 HSKKNHVMIMA-AIVGASVLLVLLILFIMRWKGCLGGKVSADK----------------- 654
           H  +  V+++A  IV   + +VL+++ +MR KG LGGK    K                 
Sbjct: 611 HGNRTRVILLAVGIVCGFLAVVLIMVAVMRRKGLLGGKDPVYKGKVINFVIESKFPFFFS 670

Query: 655 ELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           ELRG+DLQTGL+TLRQIK AT NFD ANK+GEGGFGSVYK
Sbjct: 671 ELRGIDLQTGLFTLRQIKVATKNFDAANKLGEGGFGSVYK 710

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345651730|gb|AEO14875.1| rfls6 protein [Glycine max]

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/691 (62%), Positives = 529/691 (76%), Gaps = 11/691 (1%)

Query: 14  SHLLFISLV-----TFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGN 68
           S +LF+ L+      F  +  +A   KL+ +EVKALK+IG K+GKKDWNFGVDPCS KGN
Sbjct: 8   SKMLFLLLLGSTSLIFLSHLASAATPKLNTQEVKALKEIGSKIGKKDWNFGVDPCSGKGN 67

Query: 69  WELSSDDKKGFESNVTCDCS---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSR 125
           W +    K    S+V CDCS   +++CHVV+I  KAQNL+G+L  E SKL YL++LDLSR
Sbjct: 68  WNVPDARKAFVMSSVICDCSFNHNSSCHVVSIYWKAQNLSGSLSPEFSKLHYLQKLDLSR 127

Query: 126 NCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK 185
           N +TGS  PQW +++LVELS+MGN+LSGPFPKVLTNITTL+NLSIEGN F+G IP +I K
Sbjct: 128 NIITGSIPPQWGTMRLVELSLMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGHIPTEIGK 187

Query: 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS 245
           L NL+KL+LSSN FTG LP  L+KLT L DLRISDNNF GKIP+FI  W  I+KLH+ G 
Sbjct: 188 LTNLEKLVLSSNGFTGALPPVLSKLTKLIDLRISDNNFLGKIPDFISNWTLIEKLHMHGC 247

Query: 246 SLEGPIPASISALTSLTDLRISDLKGSES-AFPKLDKM-NLKTLILTKCLIHGEIPDYIG 303
           SLEGPIP+SISALT L+DLRI+DLKGS+S AFP L+ + ++KTL+L KC+I GEIP+YIG
Sbjct: 248 SLEGPIPSSISALTRLSDLRITDLKGSKSSAFPPLNNLKSMKTLVLRKCMIKGEIPEYIG 307

Query: 304 DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363
            M KLK +DLS+N L+G IP +F +L K +FMYLTGNKL+G +P+++  +N+N+DIS NN
Sbjct: 308 RMEKLKILDLSYNGLSGEIPESFAQLDKVDFMYLTGNKLSGIIPRWVLANNENIDISDNN 367

Query: 364 FTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGA 423
           F+W+SS P EC RGSVNLVESYSS  N   K++ CL++NF C+A   QY Y+L+INCGG 
Sbjct: 368 FSWDSSSPTECQRGSVNLVESYSSSVNTQTKINSCLKKNFLCTASPSQYRYSLNINCGGN 427

Query: 424 KINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAV 483
           + N     YEAD E +GA+M Y + Q WA SSTG F D+D D D YI  NTS L+ VSA+
Sbjct: 428 EANVSGNIYEADREQKGAAMLYYTSQDWALSSTGNFTDNDIDSDPYIVANTSRLN-VSAL 486

Query: 484 DLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKL 543
           + +LY TARVSPL+LTYYGLCL NGNYTV+LHFAEIIF ND + NSLG+R+FD+YIQ  L
Sbjct: 487 NSKLYTTARVSPLALTYYGLCLINGNYTVKLHFAEIIFINDRSLNSLGRRVFDVYIQGNL 546

Query: 544 VKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISV 603
           V KDF+I  EAGGTG  I K F A VT HTLKIH YWAG+GTTGIP RG YGPL+SAISV
Sbjct: 547 VLKDFDIRREAGGTGKSIEKTFNASVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISV 606

Query: 604 KSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQT 663
             NFKPP    K+ ++++   IV   +++VLL+L ++R  G LGGK    KELRG+DLQT
Sbjct: 607 NPNFKPPSGEGKRTYLILAIIIVAGVLVVVLLVLVLLRRMGWLGGKDPVYKELRGIDLQT 666

Query: 664 GLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           GL+TLRQIKAAT NFD  NK+GEGGFG VYK
Sbjct: 667 GLFTLRQIKAATKNFDALNKIGEGGFGCVYK 697

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106662|dbj|BAJ53166.1| JHL10I11.12 [Jatropha curcas]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/583 (71%), Positives = 481/583 (82%), Gaps = 6/583 (1%)

Query: 114 KLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173
           KLR+L+ LDLSRNC TGS   QWA+L+LV LS MGNRLSG FPKVLTNITTL NLS+EGN
Sbjct: 1   KLRHLQLLDLSRNCFTGSIPSQWATLRLVNLSFMGNRLSGSFPKVLTNITTLTNLSVEGN 60

Query: 174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGK 233
            F+GSIP +I KLINLQK ILSSN+FTG+LP EL+KLTNL D+RISDNNFSG IP FI K
Sbjct: 61  RFSGSIPREIGKLINLQKFILSSNAFTGKLPTELSKLTNLTDMRISDNNFSGTIPTFINK 120

Query: 234 WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKC 292
           W  IQKLHIQGS LEGPIP+SISAL +L+DLRISDLKG  S FP L  M ++K LIL  C
Sbjct: 121 WTHIQKLHIQGSGLEGPIPSSISALKNLSDLRISDLKGKGSTFPPLSNMESIKALILRNC 180

Query: 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
           L+  EIP+YIG M KLKN+DLSFNNLTG IPT+F  L K +FMYLTGNKLTG VP+++  
Sbjct: 181 LLSDEIPEYIGHMKKLKNLDLSFNNLTGEIPTSFSYLGKADFMYLTGNKLTGSVPEWVLE 240

Query: 353 SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQY 412
            NKNVDIS NNF+WESS PIECPRGSVNLVESYSS   KL KVH CL+QNFPCS+  ++ 
Sbjct: 241 RNKNVDISDNNFSWESSSPIECPRGSVNLVESYSSSTEKLSKVHSCLKQNFPCSS--NKK 298

Query: 413 HYTLHINCGGAK-INTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIR 471
           +Y+L+INCGG + I  G+T Y+AD+E RGASMFY+S Q WAFSSTG FMD++ D D YI+
Sbjct: 299 YYSLYINCGGEEMIAGGNTTYQADLEPRGASMFYTS-QSWAFSSTGNFMDNNIDSDPYIQ 357

Query: 472 TNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLG 531
            NTS +S VS+ D +LY TARVSP+SLTYYGLCL NGNYTV LHFAEI+F NDS+FNSLG
Sbjct: 358 INTSAISNVSSPDAQLYTTARVSPISLTYYGLCLINGNYTVNLHFAEIVFINDSSFNSLG 417

Query: 532 KRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLR 591
           +RIFD+YIQEKLV KDFNI +EAGGTG PIVK F   VTSHTLKIH YWAG+GTTGIP+R
Sbjct: 418 RRIFDVYIQEKLVLKDFNIVEEAGGTGRPIVKKFTVTVTSHTLKIHFYWAGKGTTGIPVR 477

Query: 592 GTYGPLISAISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVS 651
           GTYGPLISAISV  NFKPP  + +K  +++ + + GA V LVLL+L IM  KGCLGGKV 
Sbjct: 478 GTYGPLISAISVDPNFKPPSDNDEKEKIIVSSTVAGA-VFLVLLVLCIMWRKGCLGGKVY 536

Query: 652 ADKELRGLDLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
           ADKELRGLDLQTG++TL+QIKAAT NFD ANKVGEGGFGSVYK
Sbjct: 537 ADKELRGLDLQTGIFTLKQIKAATKNFDAANKVGEGGFGSVYK 579

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849060|ref|XP_002892411.1| hypothetical protein ARALYDRAFT_470791 [Arabidopsis lyrata subsp. lyrata] gi|297338253|gb|EFH68670.1| hypothetical protein ARALYDRAFT_470791 [Arabidopsis lyrata subsp. lyrata]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/683 (60%), Positives = 512/683 (74%), Gaps = 16/683 (2%)

Query: 22  VTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFES 81
           +TF G    +   KLH  EV+ALK+IG KLGKKDWNF  DPCS +GNW +++   K FES
Sbjct: 16  LTFHGRLGFSDNTKLHEAEVRALKEIGEKLGKKDWNFNKDPCSGEGNWVVTTYTTKEFES 75

Query: 82  NVTCDCS----SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWA 137
           N+TCDCS    +++CHV+ IALK+QNLTG +P+E SKLR+LK LDLSRN LTGS   +WA
Sbjct: 76  NITCDCSFLPPNSSCHVIRIALKSQNLTGIVPSEFSKLRHLKVLDLSRNSLTGSIPKEWA 135

Query: 138 SLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN 197
           S++L +LS MGNRLSGPFPKVLT ITTL+NLS+EGN F+G IPPDI KL++L+KL L SN
Sbjct: 136 SMRLEDLSFMGNRLSGPFPKVLTRITTLRNLSLEGNQFSGPIPPDIGKLVHLEKLHLPSN 195

Query: 198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISA 257
           +FTG L  +L  L NL D+RISDNNF+G IP+FIG W ++ KL + G  L+GPIP+SIS 
Sbjct: 196 AFTGPLTEKLGLLKNLTDMRISDNNFTGPIPDFIGNWTRVMKLQMHGCGLDGPIPSSIST 255

Query: 258 LTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN 316
           LTSLTDLRISDL G  S+FP+L  + ++KTLIL KC ++G IP YIGD+ KLK +DLSFN
Sbjct: 256 LTSLTDLRISDLGGKPSSFPQLKNLESIKTLILRKCNLNGPIPKYIGDLMKLKTLDLSFN 315

Query: 317 NLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI--EC 374
            L+G IP++FEK+ K +F+YLTGNKLTG VP Y    NKNVD+S NNFT ESS P   +C
Sbjct: 316 LLSGEIPSSFEKMKKADFIYLTGNKLTGGVPNYFVERNKNVDVSYNNFTDESSIPKNGDC 375

Query: 375 PRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGA--KINTGHTKY 432
            R S N+VE ++   NK  K   C  Q+FPC+ P   + Y L+INCGG   K++ G T Y
Sbjct: 376 NRVSFNMVEGFA--LNKSHKNSTCFLQHFPCAHPKRHHTYKLYINCGGGEVKVDKGIT-Y 432

Query: 433 EADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLS-KVSAVDLELYRTA 491
           + D E +GASM Y  G++WA SSTG FMD+D D D+Y   NTS LS   S+   ELYRTA
Sbjct: 433 QTDDEPKGASM-YVLGKHWALSSTGNFMDNDDDADDYTVQNTSRLSVNASSPSFELYRTA 491

Query: 492 RVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIE 551
           RVSPLSLTYYGLCLGNGNYTV LHFAEIIF +D+T  SLGKR+FDIY+Q++LV K+FNI+
Sbjct: 492 RVSPLSLTYYGLCLGNGNYTVNLHFAEIIFTDDNTLYSLGKRLFDIYVQDQLVIKNFNIQ 551

Query: 552 DEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPV 611
           + A G+G PI+K+F   VT HTLKI L WAG+GTTGIP+RG YGP+ISAISV+ NFKPPV
Sbjct: 552 EAARGSGKPIIKSFMVNVTDHTLKIGLRWAGKGTTGIPIRGVYGPMISAISVEPNFKPPV 611

Query: 612 VHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQI 671
            +  K  ++     V A+ LL+ +I+ +  WK     K + DKELRGLDLQTG +TLRQI
Sbjct: 612 YYDIKGIILKAGVPVAAATLLLFIIVGVF-WKK-RRDKNAIDKELRGLDLQTGTFTLRQI 669

Query: 672 KAATNNFDPANKVGEGGFGSVYK 694
           KAAT+NFD A K+GEGGFGSVYK
Sbjct: 670 KAATDNFDVAKKIGEGGFGSVYK 692

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	700
TAIR|locus:2203718	1035	AT1G53440 [Arabidopsis thalian	0.931	0.629	0.476	3.8e-156
TAIR|locus:2203847	1021	RKF1 "receptor-like kinase in	0.932	0.639	0.430	4.7e-135
TAIR|locus:2019367	1078	AT1G29740 [Arabidopsis thalian	0.912	0.592	0.426	2.3e-126
TAIR|locus:2019317	969	AT1G29730 [Arabidopsis thalian	0.787	0.568	0.438	1.3e-124
TAIR|locus:2205250	1032	AT1G56130 [Arabidopsis thalian	0.94	0.637	0.375	7.6e-112
TAIR|locus:2009630	953	AT1G53420 [Arabidopsis thalian	0.858	0.630	0.365	4.7e-87
TAIR|locus:2205260	1047	AT1G56120 [Arabidopsis thalian	0.828	0.553	0.317	3.1e-67
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.448	0.280	0.323	3.3e-38
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.382	0.207	0.361	5.5e-37
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.421	0.282	0.317	1e-35

TAIR|locus:2203718 AT1G53440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
 Identities = 320/672 (47%), Positives = 430/672 (63%)

Query:    31 ATANKLHAEEVKALKQIGRKLGKKDWNFGVDPC-SQKGNWELSSDDKKGFESNVTCDCS- 88
             + A  L  +EV+ L+ I RKL  +  N     C  +K N+   S  K    SN+TCDC+ 
Sbjct:    24 SNAQLLPEDEVQTLRTIFRKLQNQTVNIERTSCLDRKWNFVAESTSKLP-TSNITCDCTF 82

Query:    89 --SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSV 146
               S+ C V  I L+  NL G +P E   L  L ++DL  N L+G+     + + L  L+V
Sbjct:    83 NASSVCRVTNIQLRGFNLRGIIPPEFGNLTRLTEIDLVLNFLSGTIPTTLSQIPLEILAV 142

Query:   147 MGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE 206
              GNRLSGPFP  L  ITTL ++ +E NLFTG +PP++  L +L++L++SSN+ TG +P  
Sbjct:   143 TGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPES 202

Query:   207 LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRI 266
             L+ L NL + RI  N+ SGKIP+FIG W ++ +L +QG+S+EGPIPASIS L +LT+LRI
Sbjct:   203 LSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRI 262

Query:   267 SDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIG-DMTKLKNIDLSFNNLTGGIPT 324
             +DL+G  S FP L  M N++ L+L  CLI   IP+YIG  MT LK +DLS N L G IP 
Sbjct:   263 TDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPD 322

Query:   325 TFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVES 384
             TF  L   NFMYL  N LTGPVP++I +S +N+D+S NNFT   +  + C +  VNL+ S
Sbjct:   323 TFRSLNAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQPPT--LSCNQLDVNLISS 380

Query:   385 YSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMF 444
             Y S  N  + V  CLR++ PC  P D +H +L INCGG ++     +Y  D+  RGAS F
Sbjct:   381 YPSVTN--NSVQWCLRKDLPC--PGDAHHSSLFINCGGNRLKVDKDEYADDLNKRGASTF 436

Query:   445 YSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLC 504
              S  + W +SS+G ++ +D     Y+ T+T  L   S    E Y+TAR++  SL YYGLC
Sbjct:   437 SSVSERWGYSSSGAWLGNDGA--TYLATDTFNLINESTP--EYYKTARLASQSLKYYGLC 492

Query:   505 LGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKN 564
             +  G+Y V+L+FAEI+F ND T++SLG+R+FDIY+Q  L+++DFNI   AGG G P ++ 
Sbjct:   493 MRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLRQ 552

Query:   565 FP-AEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVHSKKNHVMIMA 623
                 +V   TL+IHL W G+GT  IP RG YGPLISAI+V  NFK        N V +  
Sbjct:   553 VDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVDTGKPLSNGV-VAG 611

Query:   624 AIVGASVLLVLLILFIMRWKGCLGGK-VSADKELRGLDLQTGLYTLRQIKAATNNFDPAN 682
              ++ A V   LL+L I+R  G LGGK V  ++ELRGLDLQTG +TL+QIK ATNNFDP N
Sbjct:   612 IVIAACVAFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPEN 671

Query:   683 KVGEGGFGSVYK 694
             K+GEGGFG VYK
Sbjct:   672 KIGEGGFGPVYK 683

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2203847 RKF1 "receptor-like kinase in flowers 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 296/688 (43%), Positives = 410/688 (59%)

Query:    22 VTFFGYAIAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFES 81
             + F  Y++ A   KL  +EV AL+QI   LG K W F  + C  +    L+       + 
Sbjct:    30 ICFKFYSVNAI--KLPQQEVDALQQIATTLGSKFWKFDAENCKIE-MVGLTETPPPTAKQ 86

Query:    82 NVTCDCSSAT---CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS 138
              + C+CS      CHVV  A K  NL GTLP ++ KL YL+++DL+ N + G+   +WAS
Sbjct:    87 EIECECSPTNDTDCHVVKFAFKDHNLPGTLP-QIVKLPYLREIDLAYNYINGTLPREWAS 145

Query:   139 LQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198
               L  +S++ NRLSG  PK   N ++L  L +E N F+G+IP ++  L++L+KL+LSSN 
Sbjct:   146 SNLTFISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNK 204

Query:   199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL 258
              TG LPA L +L N+ D RI+D   SG IP +I  WK++++L +  S L GPIP+ IS L
Sbjct:   205 LTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVISVL 264

Query:   259 TSLTDLRISDLKGSESAFPKLDKMN-LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNN 317
             ++L +LRISD++G    FP L  +  L  +IL  C I G+IP Y+  + +L+ +DLSFN 
Sbjct:   265 SNLVNLRISDIRGPVQPFPSLKNVTGLTKIILKNCNISGQIPTYLSHLKELETLDLSFNK 324

Query:   318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIEC-PR 376
             L GGIP+ F +     F+ L GN L G  P  +      VD+S NN  W+S +   C P 
Sbjct:   325 LVGGIPS-FAQAENLRFIILAGNMLEGDAPDELLRDGITVDLSYNNLKWQSPESRACRPN 383

Query:   377 GSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAK--INTGHTK--Y 432
              ++NL    S+   K  K  PC++ +F C  P  +Y   LH+NCGG+   +    TK  Y
Sbjct:   384 MNLNLNLFQSTSTKKSSKFLPCIK-DFKC--P--RYSSCLHVNCGGSDMYVKEKKTKELY 438

Query:   433 EAD--MEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRT 490
             E D  +E   A  F      W FSSTG FMDD+    N+  T   T+   ++   +LY++
Sbjct:   439 EGDGNVEGGAAKYFLKPDANWGFSSTGDFMDDN----NFQNTRF-TMFVPASNQSDLYKS 493

Query:   491 ARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNI 550
             AR++P+SLTY+  CL NGNYT+ L FAEI F ND  +N LG+R+FDIYIQEKLV KDFNI
Sbjct:   494 ARIAPVSLTYFHACLENGNYTINLDFAEIRFTNDENYNRLGRRLFDIYIQEKLVAKDFNI 553

Query:   551 EDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPP 610
              DEA G   PI+K   A VT+H L I L WAG+GTT IP RG YGP+ISAIS+ S+ KP 
Sbjct:   554 MDEAKGAQTPIIKPLTAYVTNHFLTIRLSWAGKGTTRIPTRGVYGPIISAISIVSDSKP- 612

Query:   611 VVHSKKNHVMIMAAI---VGASVLLVLLILFIMRWK-GCLGGKVSADKELRGLDLQTGLY 666
                  K  +   A I   +GA  L++ ++ F+  W  GCL       K+    +L +G +
Sbjct:   613 -CERPKTGMSPGAYIAIGIGAPCLIIFILGFL--WICGCLPRCGRQRKDPYEEELPSGTF 669

Query:   667 TLRQIKAATNNFDPANKVGEGGFGSVYK 694
             TLRQIK AT++F+P NK+GEGGFG+V+K
Sbjct:   670 TLRQIKFATDDFNPTNKIGEGGFGAVFK 697

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2019367 AT1G29740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 294/689 (42%), Positives = 394/689 (57%)

Query:    29 IAATANKLHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDD-KKGFESNVTCDC 87
             + + +  LH +EV+ALK I   LG K  N   DPC  K    ++ D  K+G  S + CDC
Sbjct:    32 VLSASPSLHPDEVEALKDIALTLGVKHLNLSEDPCLTK-TLVITQDVLKEGQNSTIRCDC 90

Query:    88 ---SSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVE 143
                ++ TCH+    LK  +L G LP E SKLRYL+ +DL RN L GS   +WASL  L  
Sbjct:    91 HFNNNNTCHITHFVLKTFSLPGRLPPEFSKLRYLEFIDLCRNYLYGSIPMEWASLPYLKS 150

Query:   144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL 203
             +SV  NRL+G  PK L     L  L +E N F+G+IP ++  L+NL+ L  SSN   G +
Sbjct:   151 ISVCANRLTGDIPKGLGKFINLTQLGLEANQFSGTIPKELGNLVNLEGLAFSSNQLVGGV 210

Query:   204 PAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTD 263
             P  L +L  L +LR SDN  +G IPEFIG   K+Q+L +  S L+ PIP SI  L +L D
Sbjct:   211 PKTLARLKKLTNLRFSDNRLNGSIPEFIGNLSKLQRLELYASGLKDPIPYSIFRLENLID 270

Query:   264 LRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323
             LRISD        P +   +LK L+L    + G IP  + D+  L  +DLSFN LTG +P
Sbjct:   271 LRISDTAAGLGQVPLITSKSLKFLVLRNMNLTGPIPTSLWDLPNLMTLDLSFNRLTGEVP 330

Query:   324 TTFEKLAKTNFMYLTGNKLTGPVPKYIF-NSNKNVDISLNNFTWESSDPIECPRGSVNLV 382
                   +   + YL GN L+G V    F  ++ N+D+S NNFTW  S    C     N +
Sbjct:   331 AD---ASAPKYTYLAGNMLSGKVESGPFLTASTNIDLSYNNFTWSQS----CKER--NNI 381

Query:   383 ESYSSPR--NKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKI---NT-GHTKYEADM 436
              +Y+S R  N L ++ PC   N  C      Y+ +LHINCGG  +   N+ G   YE D 
Sbjct:   382 NTYASSRSTNSLTRLLPCSAINL-CQ----NYNRSLHINCGGPDVTIENSRGRFLYEGDN 436

Query:   437 EARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPL 496
                  S     G+ W FS+TG FMDD    D Y     S+ S VSA   +LY+ AR SPL
Sbjct:   437 YGLTGSATNYYGKNWGFSNTGDFMDDAITEDTY---TVSSESAVSAKYPDLYQNARRSPL 493

Query:   497 SLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGG 556
             SL Y+ +C  NG+Y V+LHFAEI F ++  F+ L KR+F+IY+Q KL+ +DF+I +EA G
Sbjct:   494 SLAYFAICFENGSYNVKLHFAEIQFSDEEPFSRLAKRVFNIYVQGKLIWEDFSIREEANG 553

Query:   557 TGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISV----KSNFKPPV- 611
             T   ++K     VT +TL+I LYWAG+GTT IP RG YG LISAISV    +S    PV 
Sbjct:   554 THKEVIKEVNTTVTDNTLEIRLYWAGKGTTIIPKRGNYGSLISAISVCPSSESECGVPVQ 613

Query:   612 VH--SKKNHVMIMA-AIVGASVLLV---LLILFIMRWKGCLGGKVSADKELRGLDLQTGL 665
             +H  +K+ H       I+G + L+V    LIL  + W+ C+    +AD E RG       
Sbjct:   614 IHPVTKQQHKQRKYHLILGIAALIVSLSFLILGALYWRICVS---NADGEKRGS------ 664

Query:   666 YTLRQIKAATNNFDPANKVGEGGFGSVYK 694
             ++LRQ+K AT++F+P NK+GEGGFGSVYK
Sbjct:   665 FSLRQLKVATDDFNPLNKIGEGGFGSVYK 693

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019317 AT1G29730 [Arabidopsis thaliana (taxid:3702)]

 Score = 1082 (385.9 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
 Identities = 254/579 (43%), Positives = 330/579 (56%)

Query:    36 LHAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDC---SSATC 92
             LH +EV+ALK I   LG K  N   DPC  K         K+G  S + CDC   + +TC
Sbjct:    39 LHPDEVEALKDITETLGVKHLNLSEDPCLTKTLVISQGVLKEGQNSTIRCDCHFNNYSTC 98

Query:    93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRL 151
             H+    L+  NL G LP  L K R+L+ +DL  N L GS   +WASL  L  +SV  NRL
Sbjct:    99 HIKHFVLQKFNLPGRLPPMLYKFRHLESIDLYNNYLYGSIPMEWASLPYLKSISVCANRL 158

Query:   152 SGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLT 211
             SG  PK L     L  L +E N F+G+IP ++  L+NLQ L LSSN   G LP  L KLT
Sbjct:   159 SGDIPKGLGKFINLTLLVLEANQFSGTIPKELGNLVNLQGLGLSSNQLVGGLPKTLAKLT 218

Query:   212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG 271
              L +L +SDN  +G IPEFIGK  K+Q+L +  S L GPIP SI  L +L D+RISD   
Sbjct:   219 KLTNLHLSDNRLNGSIPEFIGKLPKLQRLELYASGLRGPIPDSIFHLENLIDVRISDTVA 278

Query:   272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
                  P++   +LK L+L    + G IP  I D+  L  +DLSFN LTG IP  +    K
Sbjct:   279 GLGHVPQITSTSLKYLVLRNINLSGPIPTSIWDLPSLMTLDLSFNRLTGEIPA-YATAPK 337

Query:   332 TNFMYLTGNKLTGPVPKYIF-NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRN 390
               + YL GN L+G V    F  ++ N+D+S NNFTW    P+   R ++N  ES S  +N
Sbjct:   338 --YTYLAGNMLSGKVETGAFLTASTNIDLSYNNFTWS---PMCKERKNINTYES-SHSKN 391

Query:   391 KLDKVHPC--LRQNFPCSAPADQYHYTLHINCGGAKI---NT-GHTKYEADMEARGASMF 444
             +L ++ PC  ++Q   C      Y  +LHINCGG  +   N+ G   YE D      S  
Sbjct:   392 RLTRLLPCSAIKQ---CQ----NYSRSLHINCGGPDVTIENSRGRFLYEGDNYGLTGSAT 444

Query:   445 YSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLC 504
                 + W +S+TG FMDD    D Y     S+ S VSA   +LY+ AR SPLSL YY  C
Sbjct:   445 NYYRKNWGYSNTGDFMDDAITEDTY---TVSSESAVSAKYPDLYQNARRSPLSLAYYAFC 501

Query:   505 LGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKN 564
               NG+Y V+LHFAEI F +   +  L KR+F+IYIQ KL+ +DF+I +EA GT   +++ 
Sbjct:   502 FENGSYNVKLHFAEIQFSDVEPYTKLAKRVFNIYIQGKLIWEDFSIREEANGTHKEVIRE 561

Query:   565 FPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISV 603
                 VT +TL+I LYWAG+GT  IP RG YG LISA+SV
Sbjct:   562 VNTTVTDNTLEIRLYWAGKGTMIIPQRGYYGSLISAVSV 600

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2205250 AT1G56130 [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 259/689 (37%), Positives = 387/689 (56%)

Query:    32 TANKLHAEEVKALKQI--GRKL-GKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCS 88
             T    H +E +AL  I    K+   ++WN   + CS         D    +   + CDCS
Sbjct:    33 TGATTHPDEARALNSIFAAWKIQAPREWNISGELCSGAAIDASVLDSNPAYNPLIKCDCS 92

Query:    89 ---SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELS 145
                S  C +  I + A ++ G +P EL  L YL  L+L +N LTGS  P   +L  ++  
Sbjct:    93 FQNSTICRITNIKVYAIDVVGPIPPELWTLTYLTNLNLGQNVLTGSLPPAIGNLTRMQWM 152

Query:   146 VMG-NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELP 204
               G N LSGP PK +  +T L+ L I  N F+GSIP +I +   LQ++ + S+  +G +P
Sbjct:   153 TFGINALSGPVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIP 212

Query:   205 AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL 264
                  L  L    I+D   + +IP+FIG W K+  L I G+ L GPIP+S S LTSLT+L
Sbjct:   213 LSFANLVQLEQAWIADLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTEL 272

Query:   265 RISDLKGSESAFPKL-DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323
             R+ D+    S+   + D  +L  L+L    + G IP  IG+ + L+ +DLSFN L G IP
Sbjct:   273 RLGDISSGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIP 332

Query:   324 TTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVE 383
              +   L++   ++L  N L G  P     S +NVD+S N+ +      +  P   +NLV 
Sbjct:   333 ASLFNLSQLTHLFLGNNTLNGSFPTQKTQSLRNVDVSYNDLSGSLPSWVSLPSLKLNLVA 392

Query:   384 SYSSPRNKLDKVHP---CLRQNFPCSAPADQYHYTLHINCGGA-KINTGHTKYEADMEAR 439
             +  +     ++V P   CL++NFPC+     Y     INCGG  K +     +E + E  
Sbjct:   393 NNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYS-DFSINCGGPEKRSVTGALFEREDEDF 451

Query:   440 G-ASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSL 498
             G AS F S+GQ WA SS G F     ++  YI T+ S    V+ +D EL+++AR+S  S+
Sbjct:   452 GPASFFVSAGQRWAASSVGLFAGSSNNI--YIATSQSQF--VNTLDSELFQSARLSASSV 507

Query:   499 TYYGLCLGNGNYTVRLHFAEI--IFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGG 556
              YYGL L NG YTV L FAEI  +    +T+  LG+R FDIY+Q +LV+KDF++   AG 
Sbjct:   508 RYYGLGLENGGYTVTLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGD 567

Query:   557 TGIPIVKN-FPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVH-- 613
             + +  V+  + A V+ + L++HL+WAG+GT  IP++G YGPLISA+S   +F P V +  
Sbjct:   568 STVRAVQRVYKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKP 627

Query:   614 -SK-KNHV-MIMAAIVGASVLLVL--LILFIMRWKGCLGGKVSADKELRGLDLQTGLYTL 668
              SK KN    I+  IVG  +L +L  +++F +R +     + + D+EL G+D++  ++T 
Sbjct:   628 PSKGKNRTGTIVGVIVGVGLLSILAGVVMFTIRKRR---KRYTDDEELLGMDVKPYIFTY 684

Query:   669 RQIKAATNNFDPANKVGEGGFGSVYKVNV 697
              ++K+AT +FDP+NK+GEGGFG VYK N+
Sbjct:   685 SELKSATQDFDPSNKLGEGGFGPVYKGNL 713

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2009630 AT1G53420 [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 232/635 (36%), Positives = 324/635 (51%)

Query:    79 FESNVTCDCSSATCH-VVTIALKAQNLTGTL-PTELSKLRYLKQLDLSRNC----LTGSF 132
             F S+ T          VV   LK  N+   + P E+S     +   +SRN     L GS 
Sbjct:    21 FASSATLPTQEGEAFKVVLTTLKKTNIDLNVDPCEVSSTGN-EWSTISRNLKRENLQGSL 79

Query:   133 SPQWASLQLV-ELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK 191
               +   L L+ E+ +  N L+G  P     +  L N+ + GN  TG IP +   +  L  
Sbjct:    80 PKELVGLPLLQEIDLSRNYLNGSIPPEW-GVLPLVNIWLLGNRLTGPIPKEFGNITTLTS 138

Query:   192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251
             L+L +N  +GELP EL  L N+  + +S NNF+G+IP    K   ++   +  + L G I
Sbjct:   139 LVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTI 198

Query:   252 PASISALTSLTDLRI--SDLKGS-ESAFPKLDKMNLKTLILTKCLIHG-EIP-DYIGDMT 306
             P  I   T L  L I  S L G    A   L  + LK L ++   ++G E P   + ++ 
Sbjct:   199 PDFIQKWTKLERLFIQASGLVGPIPIAIASL--VELKDLRISD--LNGPESPFPQLRNIK 254

Query:   307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTW 366
             K++ + L   NLTG +P    K+    F+ L+ NKL+G +P    N      I       
Sbjct:   255 KMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKLSGAIPNTYINLRDGGYIYFTGNML 314

Query:   367 ESSDPIECPRGSVNLVESYSS----PRN---KLDKVHPCLRQNFPCSAPADQYHYTLHIN 419
               S P         +  SY++    P N   K + V  C+R N+ C    +     LHIN
Sbjct:   315 NGSVPDWMVNKGYKIDLSYNNFSVDPTNAVCKYNNVLSCMR-NYQCPKTFN----ALHIN 369

Query:   420 CGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSK 479
             CGG +++   T YE+D   R  S +Y S   W  ++ G F+DD    +    T  S  S+
Sbjct:   370 CGGDEMSINGTIYESDKYDRLES-WYESRNGWFSNNVGVFVDDKHVPERV--TIESNSSE 426

Query:   480 VSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYI 539
             ++ VD  LY  AR+S +SLTYY LCL NGNY V LHFAEI+F  ++ + SLG+R FDIYI
Sbjct:   427 LNVVDFGLYTQARISAISLTYYALCLENGNYNVNLHFAEIMFNGNNNYQSLGRRFFDIYI 486

Query:   540 QEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLIS 599
             Q KL  KDFNI  EA   G  ++K FP E+    L+I LYWAGRGTT IP    YGPLIS
Sbjct:   487 QRKLEVKDFNIAKEAKDVGNVVIKTFPVEIKDGKLEIRLYWAGRGTTVIPKERVYGPLIS 546

Query:   600 AISVKSNFKPPVVHSKKNHVMIMAAIVGASVLLVLLILFIMRWKGCLGGKVSADKELRGL 659
             AISV S+  P   +      +    ++  S+ +V L+   +  KG L  K   +K+ + L
Sbjct:   547 AISVDSSVNPSPRNGMSTGTLHTLVVI-LSIFIVFLVFGTLWKKGYLRSKSQMEKDFKSL 605

Query:   660 DLQTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
             +L    ++LRQIK ATNNFD AN++GEGGFG VYK
Sbjct:   606 ELMIASFSLRQIKIATNNFDSANRIGEGGFGPVYK 640

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205260 AT1G56120 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 199/626 (31%), Positives = 322/626 (51%)

Query:    95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSG 153
             +T  + A  L+G +P E+  L  L+ L +S N  +GS   +  S  +L ++ +  + LSG
Sbjct:   127 MTFGINA--LSGPIPKEIGLLTDLRLLGISSNNFSGSLPAEIGSCTKLQQMYIDSSGLSG 184

Query:   154 PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL 213
               P    N   L+   I     TG IP  I     L  L +     +G +P+  + L  L
Sbjct:   185 GIPLSFANFVELEVAWIMDVELTGRIPDFIGFWTKLTTLRILGTGLSGPIPSSFSNLIAL 244

Query:   214 NDLRISD-NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL--TDLRISDLK 270
              +LR+ D +N S  + +FI   K +  L ++ ++L G IP++I   TSL   DL  + L 
Sbjct:   245 TELRLGDISNGSSSL-DFIKDMKSLSVLVLRNNNLTGTIPSTIGGYTSLQQVDLSFNKLH 303

Query:   271 GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE--- 327
             G   A    +   L  L L    ++G +P   G    L N+D+S+N+L+G +P+      
Sbjct:   304 GPIPA-SLFNLSRLTHLFLGNNTLNGSLPTLKGQ--SLSNLDVSYNDLSGSLPSWVSLPD 360

Query:   328 ---KLAKTNFMY--LTGNKLTG-PVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNL 381
                 L   NF    L    L+G    +  F  N+   I   N       P +     +N 
Sbjct:   361 LKLNLVANNFTLEGLDNRVLSGLHCLQKNFPCNRGEGICKCN----KKIPSQIMFSMLN- 415

Query:   382 VESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINCGGAKINT--GHTKYEADMEAR 439
             V++Y    N L + + C +  F      D   Y   INCGG +I +  G    + D +  
Sbjct:   416 VQTYGQGSNVLLEKN-CFK-TFAIDWCLD---YNFSINCGGPEIRSVSGALFEKEDADLG 470

Query:   440 GASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLT 499
              AS   S+ + WA SS G F     ++  YI T+ +    ++ +D EL+++AR+S  SL 
Sbjct:   471 PASFVVSAAKRWAASSVGNFAGSSNNI--YIATSLAQF--INTMDSELFQSARLSASSLR 526

Query:   500 YYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGI 559
             YYGL L NG YTV L FAE+  +  +++  +G+R F+IY+Q +LV+KDF+I   AGG+ +
Sbjct:   527 YYGLGLENGGYTVTLQFAEVQIEGSNSWKGIGRRRFNIYVQGRLVEKDFDIRRTAGGSSV 586

Query:   560 PIV-KNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISVKSNFKPPVVH---SK 615
               V + +   V+ + L++HL+WAG+GT  IP++G YGPLI+A+S   +F P V +   SK
Sbjct:   587 RAVQREYKTNVSENHLEVHLFWAGKGTCCIPIQGAYGPLIAAVSATPDFTPTVANRPPSK 646

Query:   616 -KNHV-MIMAAIVGASVLLVL--LILFIMRWKGCLGGKVSADKELRGLDLQTGLYTLRQI 671
              K+    I+  IVG  +L +   +++ ++R +       + D+E+  +D++   +T  ++
Sbjct:   647 GKSRTGTIVGVIVGVGLLSIFAGVVILVIRKRR---KPYTDDEEILSMDVKPYTFTYSEL 703

Query:   672 KAATNNFDPANKVGEGGFGSVYKVNV 697
             K AT +FD +NK+GEGGFG+VYK N+
Sbjct:   704 KNATQDFDLSNKLGEGGFGAVYKGNL 729

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
 Identities = 103/318 (32%), Positives = 159/318 (50%)

Query:    56 WNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKL 115
             W +GV  C+ +G+ E  +    G E         +  ++  + L    L+GT+P +   L
Sbjct:    68 W-YGVS-CNSRGSIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNL 125

Query:   116 RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL 174
               L   DLS N LTG  SP   +L+ L  L +  N L+   P  L N+ ++ +L++  N 
Sbjct:   126 SKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNK 185

Query:   175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW 234
              TGSIP  +  L NL  L L  N  TG +P EL  + ++ DL +S N  +G IP  +G  
Sbjct:   186 LTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNL 245

Query:   235 KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCL 293
             K +  L++  + L G IP  I  + S+T+L +S  K + S    L  + NL  L L +  
Sbjct:   246 KNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNY 305

Query:   294 IHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNS 353
             + G IP  +G++  + +++LS N LTG IP++   L     +YL  N LTG +P  + N 
Sbjct:   306 LTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM 365

Query:   354 NKNVDISLNNFTWESSDP 371
                +D+ LNN     S P
Sbjct:   366 ESMIDLQLNNNKLTGSIP 383

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 406 (148.0 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
 Identities = 99/274 (36%), Positives = 154/274 (56%)

Query:    97 IALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVEL-SVMGNRLSGPF 155
             + L   +L+G L   +++L++L +L +S N ++GS  P   SL+ +EL  +  N  +G  
Sbjct:   142 MVLDYNSLSGQLSPAIAQLQHLTKLSISMNSISGSLPPDLGSLKNLELLDIKMNTFNGSI 201

Query:   156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLND 215
             P    N++ L +     N  TGSI P I  L NL  L LSSNSF G +P E+ +L NL  
Sbjct:   202 PATFGNLSCLLHFDASQNNLTGSIFPGITSLTNLLTLDLSSNSFEGTIPREIGQLENLEL 261

Query:   216 LRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA 275
             L +  N+ +G+IP+ IG  K+++ LH++     G IP SIS L+SLT+L ISD    ++ 
Sbjct:   262 LILGKNDLTGRIPQEIGSLKQLKLLHLEECQFTGKIPWSISGLSSLTELDISD-NNFDAE 320

Query:   276 FPK-LDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN 333
              P  + ++ NL  LI     + G +P  +G+  KL  I+LSFN L G IP  F  L    
Sbjct:   321 LPSSMGELGNLTQLIAKNAGLSGNMPKELGNCKKLTVINLSFNALIGPIPEEFADLEAIV 380

Query:   334 FMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFT 365
               ++ GNKL+G VP +I  + + +++ +  N F+
Sbjct:   381 SFFVEGNKLSGRVPDWIQKWKNARSIRLGQNKFS 414

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
 Identities = 98/309 (31%), Positives = 157/309 (50%)

Query:    96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGP 154
             T++L    LTG +P+ L  ++ L  L L  N L GS  P+   ++ +++L +  N+L+GP
Sbjct:   290 TLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGP 349

Query:   155 FPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLN 214
              P     +T L+ L +  N  +G IPP I     L  L L +N+FTG LP  + +   L 
Sbjct:   350 VPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLE 409

Query:   215 DLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT--DLRISDLKGS 272
             +L + DN+F G +P+ +   K + ++  +G+S  G I  +     +L   DL  ++  G 
Sbjct:   410 NLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQ 469

Query:   273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332
              SA  +     L   IL+   I G IP  I +MT+L  +DLS N +TG +P +   + + 
Sbjct:   470 LSANWE-QSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRI 528

Query:   333 NFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESY--SSP 388
             + + L GN+L+G +P  I    + + +D+S N F   SS   E P    NL   Y  +  
Sbjct:   529 SKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRF---SS---EIPPTLNNLPRLYYMNLS 582

Query:   389 RNKLDKVHP 397
             RN LD+  P
Sbjct:   583 RNDLDQTIP 591

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C0LGE0	Y1765_ARATH	2, ., 7, ., 1, 1, ., 1	0.5909	0.9571	0.6607	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	700
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	9e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score =  197 bits (504), Expect = 9e-60
 Identities = 86/192 (44%), Positives = 101/192 (52%), Gaps = 32/192 (16%)

Query: 414 YTLHINCGGAKINTGH-TKYEAD-MEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIR 471
             L INCGG +        YEAD     G++ +Y S    + S  G    D         
Sbjct: 1   VVLAINCGGPEHTDSDGITYEADTYFTGGSADYYVSDTNGSSSIAG--TTDP-------- 50

Query: 472 TNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLG 531
                         ELY+T R SP S +YY  CL NGNYTV LHFAEI F  D     LG
Sbjct: 51  --------------ELYQTERYSPSSFSYYIPCLENGNYTVILHFAEIYFGED----GLG 92

Query: 532 KRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNF-PAEVTSHTLKIHLYWAGRGTTGIPL 590
           +R+FD+Y+Q KLV KDF+I  EAGG G    K + P  VT  TL+IH YWAG+GT  IP 
Sbjct: 93  RRVFDVYVQGKLVLKDFDIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFYWAGKGTLLIPF 152

Query: 591 RGTYG-PLISAI 601
           RG YG P ISAI
Sbjct: 153 RGVYGNPKISAI 164

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  146 bits (371), Expect = 2e-36
 Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 29/293 (9%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN 161
           NLTG +P+ L  L+ L+ L L +N L+G   P   SLQ L+ L +  N LSG  P+++  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
           +  L+ L +  N FTG IP  +  L  LQ L L SN F+GE+P  L K  NL  L +S N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGS-ESAFPK 278
           N +G+IPE +     + KL +  +SLEG IP S+ A  SL  +R+ D    G   S F K
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 279 L----------------------DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN 316
           L                      D  +L+ L L +    G +PD  G   +L+N+DLS N
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRN 485

Query: 317 NLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNK--NVDISLNNFTWE 367
             +G +P     L++   + L+ NKL+G +P  + +  K  ++D+S N  + +
Sbjct: 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (351), Expect = 5e-34
 Identities = 118/396 (29%), Positives = 183/396 (46%), Gaps = 76/396 (19%)

Query: 14  SHLLFISLVTFFGYAIAATANKLHAEEVKALKQIGRKLGK-----KDWNFGVDPCSQKG- 67
            +L+F+    F  +++      LHAEE++ L      +        +WN   D C  +G 
Sbjct: 10  PYLIFMLFFLFLNFSM------LHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGI 63

Query: 68  ----NWELSSDDKKGFESNVTCDCSSATCH---VVTIALKAQNLTGTLPTEL----SKLR 116
               +  + S D  G   N++   SSA      + TI L    L+G +P ++    S LR
Sbjct: 64  TCNNSSRVVSIDLSG--KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121

Query: 117 YL-------------------KQLDLSRNCLTGSFSPQ----WASLQLVELSVMGNRLSG 153
           YL                   + LDLS N L+G   P     ++SL++++L   GN L G
Sbjct: 122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLG--GNVLVG 178

Query: 154 PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL 213
             P  LTN+T+L+ L++  N   G IP ++ ++ +L+ + L  N+ +GE+P E+  LT+L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 214 NDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE 273
           N L +  NN +G IP  +G  K +Q L +  + L GPIP SI +L  L  L +SD   S 
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS- 297

Query: 274 SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN 333
                                 GEIP+ +  +  L+ + L  NN TG IP     L +  
Sbjct: 298 ----------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 334 FMYLTGNKLTGPVPKYIFNSNK--NVDISLNNFTWE 367
            + L  NK +G +PK +   N    +D+S NN T E
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (306), Expect = 2e-28
 Identities = 88/272 (32%), Positives = 141/272 (51%), Gaps = 9/272 (3%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWA---SLQLVELSVMGNRLSGPF 155
           L + N TG +P  L+ L  L+ L L  N  +G          +L +++LS   N L+G  
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST--NNLTGEI 372

Query: 156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLND 215
           P+ L +   L  L +  N   G IP  +    +L+++ L  NSF+GELP+E TKL  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 216 LRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA 275
           L IS+NN  G+I         +Q L +  +   G +P S  +   L +L +S  + S + 
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 276 FPKLDKMN-LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNF 334
             KL  ++ L  L L++  + GEIPD +    KL ++DLS N L+G IP +F ++   + 
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 335 MYLTGNKLTGPVPKYIFN--SNKNVDISLNNF 364
           + L+ N+L+G +PK + N  S   V+IS N+ 
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 2e-22
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 27/245 (11%)

Query: 87  CSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVE-LS 145
           CSS   ++  + L + +L G +P  L   R L+++ L  N  +G    ++  L LV  L 
Sbjct: 377 CSSG--NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 146 VMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPA 205
           +  N L G       ++ +L+ LS+  N F G + PD      L+ L LS N F+G +P 
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPR 493

Query: 206 ELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265
           +L  L+ L  L++S+N  SG+IP+ +   KK+  L +  + L G IPAS S +  L+ L 
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL- 552

Query: 266 ISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT 325
             DL  ++                    + GEIP  +G++  L  +++S N+L G +P+T
Sbjct: 553 --DLSQNQ--------------------LSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Query: 326 FEKLA 330
              LA
Sbjct: 591 GAFLA 595

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 3e-13
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 42/175 (24%)

Query: 39  EEVKALKQIGRKLG---KKDWNFGVDPCS-QKGNWELSSDDKKGFESNVTC--DCSSATC 92
           EEV AL+ +   LG   +  WN   DPC  Q+  W           S   C  D +    
Sbjct: 372 EEVSALQTLKSSLGLPLRFGWNG--DPCVPQQHPW-----------SGADCQFDSTKGKW 418

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS 152
            +  + L  Q L G +P ++SKLR+L+ ++LS                       GN + 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLS-----------------------GNSIR 455

Query: 153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL 207
           G  P  L +IT+L+ L +  N F GSIP  + +L +L+ L L+ NS +G +PA L
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 7e-13
 Identities = 34/82 (41%), Positives = 52/82 (63%)

Query: 177 GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
           G IP DI KL +LQ + LS NS  G +P  L  +T+L  L +S N+F+G IPE +G+   
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 237 IQKLHIQGSSLEGPIPASISAL 258
           ++ L++ G+SL G +PA++   
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 67.7 bits (165), Expect = 6e-12
 Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 32/251 (12%)

Query: 118 LKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFT 176
           L  LDL+ N L  + S       L  L +  N ++   P ++  +   LK L +  N   
Sbjct: 95  LPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE 153

Query: 177 GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
            S+P  +R L NL+ L LS N  + +LP  L+ L+NLN+L +S N  S  +P  I     
Sbjct: 154 -SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG 296
           +++L +  +S+   + +S+S L +L+ L +S+ K                          
Sbjct: 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE------------------------ 245

Query: 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN 356
           ++P+ IG+++ L+ +DLS N ++    ++   L     + L+GN L+  +P         
Sbjct: 246 DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL 303

Query: 357 VDISLNNFTWE 367
             +     T +
Sbjct: 304 ELLLNLLLTLK 314

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 24/117 (20%)

Query: 231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILT 290
            GKW  I  L +    L G IP  IS L  L  + +S                       
Sbjct: 415 KGKWF-IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-------------------- 453

Query: 291 KCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVP 347
              I G IP  +G +T L+ +DLS+N+  G IP +  +L     + L GN L+G VP
Sbjct: 454 ---IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 43/177 (24%), Positives = 60/177 (33%), Gaps = 47/177 (26%)

Query: 451 WAFSSTGKFM--DDDT-------DLDNYIRTNTSTLSKVSAVD--------LELYRTARV 493
             F  +   +   DD           +   +  ST   V              + +TA  
Sbjct: 175 LNFGGSEGTIRYPDDVYDRIWEPFFSSPGWSQISTSLSVDISSNNAPYIPPSAVLQTAVT 234

Query: 494 -----SPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDF 548
                +PL+ T+  L   N  Y V LHFAEI         SL  R FDIYI  K V  D 
Sbjct: 235 PTNASAPLNFTW-DLVDPNFEYYVYLHFAEI--------QSLETREFDIYINGKTVYGDV 285

Query: 549 NIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLR----GTYGPLISAI 601
           +     G     +  +FP           +  +G G   I L      T  PL++A+
Sbjct: 286 SP-KYLGTDTGALYLDFP-----------VNVSGGGLLNISLVPTSGSTLPPLLNAL 330

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 17/120 (14%)

Query: 487 LYRTARVS---PLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKL 543
           LY++A VS      L+Y      N NY+V LHFAEI    D++  + GKR+FD+ I    
Sbjct: 254 LYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEI----DNSITAEGKRVFDVLINGDT 309

Query: 544 VKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGRGTTGIPLRGTYGPLISAISV 603
             KD +I   +G     +V N    V+  TL I L          P +GT+  +I+AI V
Sbjct: 310 AFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQ---------PKKGTHA-IINAIEV 359

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 23/99 (23%)

Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNL 284
           G IP  I K + +Q +++ G+S+ G IP S+ ++TSL  L   DL  +            
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL---DLSYNS----------- 477

Query: 285 KTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323
                     +G IP+ +G +T L+ ++L+ N+L+G +P
Sbjct: 478 ---------FNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 283 NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
           NLK+L L+   +          +  LK +DLS NNLT   P  F  L     + L+GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172
            KLR L+       C+  +F P+     LV+L + G++L   +  V  ++T L+N+ + G
Sbjct: 589 PKLRLLRWDKYPLRCMPSNFRPE----NLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRG 643

Query: 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
           +     IP D+    NL+ L LS  S   ELP+ +  L  L DL +S
Sbjct: 644 SKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	700
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.46
PLN03150	623	hypothetical protein; Provisional	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.59
KOG1187	361	consensus Serine/threonine protein kinase [Signal	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.11
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG3593	355	consensus Predicted receptor-like serine/threonine	97.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.98
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	96.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.49
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.48
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.22
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	94.76
KOG4308	478	consensus LRR-containing protein [Function unknown	93.86
KOG3653	534	consensus Transforming growth factor beta/activin	93.83
PLN03224	507	probable serine/threonine protein kinase; Provisio	93.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.33
KOG4341	483	consensus F-box protein containing LRR [General fu	92.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.03
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	91.57
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	91.24
KOG4308	478	consensus LRR-containing protein [Function unknown	90.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.19
smart00370	26	LRR Leucine-rich repeats, outliers.	89.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.03
smart00370	26	LRR Leucine-rich repeats, outliers.	88.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.27
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	84.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.23
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	81.6
PTZ00284	467	protein kinase; Provisional	81.3
KOG1947	482	consensus Leucine rich repeat proteins, some prote	81.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-39  Score=390.78  Aligned_cols=318  Identities=31%  Similarity=0.539  Sum_probs=215.5

Q ss_pred             CHHHHHHHHHHHHhcCC-----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCcCchh
Q 005361           37 HAEEVKALKQIGRKLGK-----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTE  111 (700)
Q Consensus        37 ~~~e~~al~~l~~~~~~-----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~  111 (700)
                      +++|++||.++++.+..     ..|....++|    .|           .||+|+.   .++|+.|+|+++.+++.++..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w-----------~gv~c~~---~~~v~~L~L~~~~i~~~~~~~   88 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVC----LW-----------QGITCNN---SSRVVSIDLSGKNISGKISSA   88 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC----cC-----------cceecCC---CCcEEEEEecCCCccccCChH
Confidence            66899999999999853     4687777888    78           7999974   468999999999999999999


Q ss_pred             hcCCCCCCEEECcCCCCCCCcccccc-ccc-ccEEEccCCCCCC----------------------CCchhcCCCCCCCE
Q 005361          112 LSKLRYLKQLDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSG----------------------PFPKVLTNITTLKN  167 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~----------------------~~p~~~~~l~~L~~  167 (700)
                      |..+++|+.|+|++|.+.+.+|..+. .++ |++|+|++|.+++                      .+|..++++++|++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            99999999999999999877665543 444 6666666665554                      44444555555555


Q ss_pred             EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      |+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..++.+++|+.|++++|.+
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            55555555555555555555555555555555555555555555555555555555555555555556666666666655


Q ss_pred             CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361          248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF  326 (700)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  326 (700)
                      .+.+|..+.++++|+.|++++|.+.......+.. .+|+.|+|++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            5555555666666666666655444332223333 667777777777776677767777777777777777777777777


Q ss_pred             hcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCCC
Q 005361          327 EKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       327 ~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~~  372 (700)
                      ..+++|+.|+|++|++++.+|..+.  .+++.|++++|.+++.+|..+
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence            7777777777777777777776553  356777777777777777655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=5.4e-30  Score=308.42  Aligned_cols=279  Identities=31%  Similarity=0.479  Sum_probs=171.3

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|+|++|++++.+|.  ..+++|++|+|++|.+.+.+|..+..++ |++|+|++|.+.+.+|..+.++++|++|+|
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            4566777777766665554  3466666666666666666666666665 666666666666666666666666666666


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      ++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|+.|+|++|.+.+.
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361          251 IPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL  329 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  329 (700)
                      +|..+.++++|+.|++++|.+.......+.. ++|+.|++++|.+++.+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            6666666666666666665544332222333 566666666666666666666666666666666666666666666666


Q ss_pred             CCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCcccccCCCCC
Q 005361          330 AKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       330 ~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~~~~p~~~  372 (700)
                      ++|+.|+|++|++++.+|..++.  +++.|++++|++.+.+|..+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~  400 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL  400 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence            66666666666666555555432  44555555555555555433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=4.6e-31  Score=271.36  Aligned_cols=316  Identities=18%  Similarity=0.203  Sum_probs=199.1

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      -++.|||+.|.|+....+.|..=.+|++|+|++|.|+......|..+. |.+|.|+.|+++...+..|.+|++|+.|+|.
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            467777777777766666666667777778877777777777777777 7777777777776666677777777777777


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      .|+|.-.---.|.+|++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-..++.++++|+.|+|++|.|....
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence            77766332445666666666666666666555555666666666666666666555556666666666666666666666


Q ss_pred             hhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh---hhHh
Q 005361          252 PASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP---TTFE  327 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~  327 (700)
                      ++.+...++|+.|+|+.|.+.......+.. ..|++|+|++|.++..-...|..+++|++|||++|.|+..+.   ..|.
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            666666666666666666655554444444 555666666666554444455555666666666665554332   2355


Q ss_pred             cCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCC---------------CCCCCCCCCccceecccCCC
Q 005361          328 KLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESS---------------DPIECPRGSVNLVESYSSPR  389 (700)
Q Consensus       328 ~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p---------------~~~~C~~~~~~~~~~~~~~~  389 (700)
                      .++.|+.|+|.+|++. .||...+   +.|+.|||.+|.+-..-|               .++.|||...|+..|+....
T Consensus       390 gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~  468 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRK  468 (873)
T ss_pred             cchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence            5555666666666655 4444333   244555555555432222               25669999999999987553


Q ss_pred             CCCCCcccccccCCCCCCCCCCcceee
Q 005361          390 NKLDKVHPCLRQNFPCSAPADQYHYTL  416 (700)
Q Consensus       390 ~~~~~~~~~~~~~~~c~~p~~~~~~~~  416 (700)
                      -.-       .-...|+.|+-..++.+
T Consensus       469 lq~-------sv~a~CayPe~Lad~~i  488 (873)
T KOG4194|consen  469 LQS-------SVIAKCAYPEPLADQSI  488 (873)
T ss_pred             ccc-------ceeeeccCCccccccee
Confidence            221       23456888877665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=4.5e-29  Score=256.80  Aligned_cols=304  Identities=19%  Similarity=0.232  Sum_probs=263.1

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccc-ccccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS-LQLVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      ..+|++.|+|.+|.|+..-..+++.++.|+.|||+.|.|+.+..+.|.. .++++|+|++|.|+..-...|.++.+|..|
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence            4679999999999999888889999999999999999999877777766 459999999999998888889999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      .|++|+++...+..|.+|++|+.|+|..|.|.-..-.+|.+|++|+.|.|..|.+...-...|-.+.+++.|+|+.|++.
T Consensus       203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            99999999776778889999999999999998444678999999999999999999777888999999999999999999


Q ss_pred             CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361          249 GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE  327 (700)
Q Consensus       249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  327 (700)
                      ..-...+.+++.|+.|+++.|.+....+..+.. ++|+.|+|++|+|+...+..|..+..|++|.|++|.++.....+|.
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            877788999999999999999999988888888 9999999999999988888999999999999999999988888999


Q ss_pred             cCCCCCEEEccCCcCCCCCchhh-----hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCccc
Q 005361          328 KLAKTNFMYLTGNKLTGPVPKYI-----FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHP  397 (700)
Q Consensus       328 ~l~~L~~L~L~~N~l~~~ip~~~-----~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~  397 (700)
                      .+++|+.|||++|.++..|-+..     ++.|+.|+|.+|++....-..|    ..++-++-+....|.+..+.+
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf----sgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF----SGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh----ccCcccceecCCCCcceeecc
Confidence            99999999999999987765432     3468899999998864332333    234455666666666665543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-27  Score=233.28  Aligned_cols=304  Identities=19%  Similarity=0.210  Sum_probs=235.6

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccE-EEccCCCCCCCCchhcCCCCCCCE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVE-LSVMGNRLSGPFPKVLTNITTLKN  167 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~-L~L~~n~l~~~~p~~~~~l~~L~~  167 (700)
                      -+...+.|+|..|.|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++. |.. ++.++|+|+......|.+|..|+.
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            467899999999999999999999999999999999999999999999998 555 455559999777788999999999


Q ss_pred             EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC------------CChhhhcCCC
Q 005361          168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG------------KIPEFIGKWK  235 (700)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~  235 (700)
                      |.+.-|++.......|..+++|..|.+..|.+..+-..+|..+.+++.+.+..|.+..            ..|..++.+.
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            9999999998888889999999999999999984444488899999999998887421            2233444444


Q ss_pred             cccEEEccCCCCCCCchhhhhcCCCCCEE--EcCCCCCCCCcccc--cCc-cCccEEEcccCCCCCCCchhhcCCCCCCE
Q 005361          236 KIQKLHIQGSSLEGPIPASISALTSLTDL--RISDLKGSESAFPK--LDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKN  310 (700)
Q Consensus       236 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--~l~~n~~~~~~~~~--l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  310 (700)
                      ...-..+.+.++....+..|...  ++.+  .++.........|.  +.. ++|++|+|++|+|+++-+.+|.++..+++
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            44444455555543333333322  2222  12222222333333  555 89999999999999999999999999999


Q ss_pred             EeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCCCCCCCCCccceecccCC
Q 005361          311 IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSP  388 (700)
Q Consensus       311 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~  388 (700)
                      |.|..|+|.......|.++..|+.|+|.+|+|+..-|..+-  ..+..|+|-.|        +|.|+|...|+.+|++..
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N--------p~~CnC~l~wl~~Wlr~~  374 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN--------PFNCNCRLAWLGEWLRKK  374 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC--------cccCccchHHHHHHHhhC
Confidence            99999999977778999999999999999999954454442  25778888888        777999999999999987


Q ss_pred             CCCCCCcccccccCCCCCCCCCCc
Q 005361          389 RNKLDKVHPCLRQNFPCSAPADQY  412 (700)
Q Consensus       389 ~~~~~~~~~~~~~~~~c~~p~~~~  412 (700)
                      .  .       .++.+|+.|....
T Consensus       375 ~--~-------~~~~~Cq~p~~~~  389 (498)
T KOG4237|consen  375 S--V-------VGNPRCQSPGFVR  389 (498)
T ss_pred             C--C-------CCCCCCCCCchhc
Confidence            5  1       2567788776544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=2.9e-25  Score=230.07  Aligned_cols=257  Identities=26%  Similarity=0.337  Sum_probs=135.7

Q ss_pred             hhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCC
Q 005361          110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLIN  188 (700)
Q Consensus       110 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  188 (700)
                      +.+..|..|+.|||++|++. ..|..+...+ +-+|+|++|+|..+.-.-|.+|..|-+|||++|++. .+|+....|.+
T Consensus        97 ~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~  174 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM  174 (1255)
T ss_pred             chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh
Confidence            33444444444444444444 2233333333 444444444444222222334444444444444443 33444444444


Q ss_pred             ccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC-CCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361          189 LQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS-GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS  267 (700)
Q Consensus       189 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  267 (700)
                      |++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+|+
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS  253 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence            444444444433211122222333333344333221 245666777777777777777777 677777778888888888


Q ss_pred             CCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC------------------------CCh
Q 005361          268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG------------------------GIP  323 (700)
Q Consensus       268 ~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------------------------~~p  323 (700)
                      +|.++......-.-.+|++|+|+.|+++ .+|+.+..+++|+.|.+.+|+++-                        ..|
T Consensus       254 ~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP  332 (1255)
T KOG0444|consen  254 GNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP  332 (1255)
T ss_pred             cCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc
Confidence            7776654433322256777777777776 566666666666666666655541                        455


Q ss_pred             hhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCC
Q 005361          324 TTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       324 ~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~  371 (700)
                      +.+..++.|+.|.|+.|++. ++|+.+  .+.++.||+..|+-.--.|.|
T Consensus       333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence            55666666666666666666 566654  345667777777644334433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=1.1e-24  Score=225.82  Aligned_cols=266  Identities=23%  Similarity=0.331  Sum_probs=196.0

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCC-CCchhcCCCCCCCEEEc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSG-PFPKVLTNITTLKNLSI  170 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L  170 (700)
                      +++-|.|....+. .+|..++.+.+|++|.+++|++... ...+..++ |+.+.+..|++.. -+|..+..|..|..|||
T Consensus        33 ~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   33 QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence            5677777766665 5677788888888888888877733 34455666 8888888887752 35666777888888888


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      ++|++. ..|..+..-+++-.|+|++|+|..+...-|.+|..|-.|||++|++. .+|..+..+..|+.|+|++|.+...
T Consensus       111 ShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  111 SHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF  188 (1255)
T ss_pred             chhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH
Confidence            888887 67777777788888888888887444455677888888888888887 5566677788888888888877643


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcccc-cCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          251 IPASISALTSLTDLRISDLKGSESAFPK-LDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                      --..+-.+++|+.|.+++.+.+...+|. +.. .+|..+||+.|.+. .+|+.+..+++|+.|+||+|+|+ .+.-....
T Consensus       189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~  266 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE  266 (1255)
T ss_pred             HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH
Confidence            3333445666777777776666555655 444 78888888888888 78888888888888888888888 44445566


Q ss_pred             CCCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCccc
Q 005361          329 LAKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFT  365 (700)
Q Consensus       329 l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~  365 (700)
                      ..+|++|+|+.|+++ .+|..++.  .++.|.+.+|+++
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            678888888888888 78888764  6777888888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=3.2e-23  Score=205.28  Aligned_cols=260  Identities=24%  Similarity=0.363  Sum_probs=225.7

Q ss_pred             EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      +..+.+++|++.. +.+.+.++..|.+|++.+|++.. .|++++.+. ++.|+.++|+++ .+|+.++.+.+|+.|++++
T Consensus        47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            6778899999874 55568999999999999999995 455666666 999999999998 7888999999999999999


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      |.+. .+|+.++.+..|+.|+..+|+++ ..|..+..+.+|..|++.+|++....|+.+. ++.|++|+...|.+. .+|
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence            9998 77889999999999999999999 7888899999999999999999976666666 999999999999988 788


Q ss_pred             hhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCch-hhcCCCCCCEEeccCCCCCCCChhhHhcCC
Q 005361          253 ASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPD-YIGDMTKLKNIDLSFNNLTGGIPTTFEKLA  330 (700)
Q Consensus       253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  330 (700)
                      +.++.+.+|..|++..|.+...  |.+.. ..|.+|+++.|+|. .+|. ....+++|..|||..|+++ ..|+.+.-+.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             hhhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            8999999999999999887654  46666 88999999999998 5555 4558999999999999999 7888889999


Q ss_pred             CCCEEEccCCcCCCCCchhhhc-CCCeeeeecCccc
Q 005361          331 KTNFMYLTGNKLTGPVPKYIFN-SNKNVDISLNNFT  365 (700)
Q Consensus       331 ~L~~L~L~~N~l~~~ip~~~~~-~l~~L~ls~N~l~  365 (700)
                      +|++||+++|.++ .+|.++.+ +++.|-+.+|++-
T Consensus       276 sL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  276 SLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             hhhhhcccCCccc-cCCcccccceeeehhhcCCchH
Confidence            9999999999999 66766644 6788889999764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=2.7e-22  Score=198.69  Aligned_cols=81  Identities=22%  Similarity=0.484  Sum_probs=55.7

Q ss_pred             cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChh------------------------hHhcCCCCCEEEc
Q 005361          282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT------------------------TFEKLAKTNFMYL  337 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L  337 (700)
                      ++|..|+|++|-+. .+|..++.+..|+.||||+|++. .+|.                        .+.++.+|..|||
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            56777888877776 66777777777888888777665 3333                        3566677777777


Q ss_pred             cCCcCCCCCchhhh--cCCCeeeeecCccc
Q 005361          338 TGNKLTGPVPKYIF--NSNKNVDISLNNFT  365 (700)
Q Consensus       338 ~~N~l~~~ip~~~~--~~l~~L~ls~N~l~  365 (700)
                      .+|.+. .+|+.+.  .+++.|++++|+|.
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCccC
Confidence            777776 6666653  36677777777665

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.79  E-value=2.2e-19  Score=168.36  Aligned_cols=167  Identities=41%  Similarity=0.660  Sum_probs=103.9

Q ss_pred             eeEEeeCCcce-ecCCceeecCccCCcccc-ceecCCceEEeeeecccCCCCCCCcceEecccccccccccchhhhhhhc
Q 005361          415 TLHINCGGAKI-NTGHTKYEADMEARGASM-FYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTAR  492 (700)
Q Consensus       415 ~~~~~c~~~~~-~~~~~~~~~~~~~~g~s~-~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~tar  492 (700)
                      .+++|||++.. ...+..|++|....+.+. |..+       .....         +  ..........+.++.||+|+|
T Consensus         2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~-------~~~~~---------~--~~~~~~~i~~t~d~~Lyqt~R   63 (174)
T PF11721_consen    2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVS-------SDNNG---------S--TSSTNSSIPGTTDDPLYQTER   63 (174)
T ss_dssp             EEEEEETSSSEEETTTEEE-SSSSSTTSS---------------------------S--STTS--TTS-HHHHHTTT---
T ss_pred             EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccc-------ccccc---------c--cccccccccCCCchhhhHhhc
Confidence            57899999877 567789999986544443 2221       00000         0  000111112278899999999


Q ss_pred             cCCccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccchhcCCcCccEEEee-EEEecC
Q 005361          493 VSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNF-PAEVTS  571 (700)
Q Consensus       493 ~~~~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~~~~~~~~p~~~df-~v~~~~  571 (700)
                      .++.+++|.+++.++|.|.|+|||+|+...........|+|+|||+|+++++.++|||...+|+...|+++.| .+.+++
T Consensus        64 ~g~~~f~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~d  143 (174)
T PF11721_consen   64 YGPSSFSYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTD  143 (174)
T ss_dssp             --SSSEEEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEET
T ss_pred             CCCCceEEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeC
Confidence            9988999999999999999999999996654344456999999999999999999999999999887777777 899999


Q ss_pred             CccEEEEEEccCcccccCCCCCCC-Cccc
Q 005361          572 HTLKIHLYWAGRGTTGIPLRGTYG-PLIS  599 (700)
Q Consensus       572 ~~~~i~~~~~~~~~~~~~~~~~~g-p~i~  599 (700)
                      +.+.|.+.|+.++.+.++.....+ |.++
T Consensus       144 g~L~i~f~~~~~~~~~i~~~~~~~~p~Is  172 (174)
T PF11721_consen  144 GTLNIQFVWAGKGTLCIPFIGSYGNPLIS  172 (174)
T ss_dssp             TEEETTEEEE--SEEEEEEESSSSSSSEE
T ss_pred             CcEEEEEEecCCCcEEeeccccCCCcEEe
Confidence            999999999998887766544444 5544

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.6e-18  Score=192.47  Aligned_cols=309  Identities=22%  Similarity=0.249  Sum_probs=204.9

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC--------CCCCCCCCCCCCCCCCc-ccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCC
Q 005361           33 ANKLHAEEVKALKQIGRKLGK--------KDWNFGVDPCSQKGNWE-LSSDDKKGFESNVTCDCSSATCHVVTIALKAQN  103 (700)
Q Consensus        33 ~~~~~~~e~~al~~l~~~~~~--------~~w~~~~d~C~~~~~w~-~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~  103 (700)
                      ..++.++|.+++.++.+.+..        ..|....+.|....+=. --.-..+.....|.|.    ..+|+.+..-+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~----~~~vt~l~~~g~~  132 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG----GKSVTYTRVTESE  132 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC----CCccccccccccc
Confidence            456788999999999998854        23777788885322000 0000000011225553    2456665554321


Q ss_pred             CCCc---------------------Cc-------hhh-----cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCC
Q 005361          104 LTGT---------------------LP-------TEL-----SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNR  150 (700)
Q Consensus       104 l~~~---------------------~~-------~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~  150 (700)
                      ....                     .+       .++     .-..+...|+++++.++.. |..+. ..|+.|+|++|.
T Consensus       133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsL-P~~Ip-~~L~~L~Ls~N~  210 (754)
T PRK15370        133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTI-PACIP-EQITTLILDNNE  210 (754)
T ss_pred             ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcC-Ccccc-cCCcEEEecCCC
Confidence            1100                     00       001     1124577889988888853 43321 138899999999


Q ss_pred             CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhh
Q 005361          151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEF  230 (700)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  230 (700)
                      ++ .+|..+.  ++|++|+|++|+++ .+|..+.  .+|+.|+|++|.+. .+|..+.  .+|+.|++++|+++ .+|..
T Consensus       211 Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~  280 (754)
T PRK15370        211 LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN  280 (754)
T ss_pred             CC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccc
Confidence            88 4555543  48999999999888 5666553  47899999999888 5676654  57899999999888 45655


Q ss_pred             hcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCE
Q 005361          231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKN  310 (700)
Q Consensus       231 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  310 (700)
                      +.  ++|+.|+|++|.++. +|..+.  ++|+.|++++|.+...  |....++|+.|++++|.+++ +|..+.  ++|+.
T Consensus       281 l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L--P~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~  350 (754)
T PRK15370        281 LP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL--PETLPPGLKTLEAGENALTS-LPASLP--PELQV  350 (754)
T ss_pred             cC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC--CccccccceeccccCCcccc-CChhhc--CcccE
Confidence            43  478999999998884 444332  4688888888777643  22122688899999998885 555443  68999


Q ss_pred             EeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCC
Q 005361          311 IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       311 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~  372 (700)
                      |+|++|+|+ .+|..+  .++|+.|+|++|+|+ .+|..+...++.|++++|++. .+|+.+
T Consensus       351 L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        351 LDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             EECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc-cCchhH
Confidence            999999988 466655  368899999999988 678777777888899999887 455543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=2.7e-18  Score=193.08  Aligned_cols=239  Identities=28%  Similarity=0.385  Sum_probs=129.1

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      +++.|++..|+++. +|.   .+++|++|+|++|+++.. |..   .+ |+.|++++|.++ .+|..   ..+|+.|+|+
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            44555555555543 222   134555555555555532 211   12 555555555554 22321   1345555666


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +|+++ .+|.   .+++|+.|+|++|.+++ +|..   ..+|+.|++++|.++. +|..   ..+|+.|+|++|.++. +
T Consensus       291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-L  357 (788)
T PRK15387        291 GNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-L  357 (788)
T ss_pred             CCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-C
Confidence            66555 3333   13456666666666653 3321   1345556666666652 3321   1356777777777663 3


Q ss_pred             hhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCC
Q 005361          252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK  331 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  331 (700)
                      |..   ..+|+.|++++|.+..  +|.+. .+|+.|+|++|.|++ +|..   .++|+.|+|++|+|++ +|..   +.+
T Consensus       358 P~l---p~~L~~L~Ls~N~L~~--LP~l~-~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~  423 (788)
T PRK15387        358 PTL---PSELYKLWAYNNRLTS--LPALP-SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSG  423 (788)
T ss_pred             CCC---Ccccceehhhcccccc--Ccccc-cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhh
Confidence            332   2456666666665543  23221 467777777777774 3432   2567777777777774 4532   245


Q ss_pred             CCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361          332 TNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       332 L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~  371 (700)
                      |+.|+|++|+|+ .+|..+.  ..++.|+|++|+|++.+|..
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            677777777777 6776654  35677777777777665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=5.6e-18  Score=191.78  Aligned_cols=245  Identities=24%  Similarity=0.347  Sum_probs=184.2

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      .+.+.|+++++.++. +|..+.  ++|+.|+|++|.++..+ ..+. ..|++|++++|.++ .+|..+.  ++|+.|+|+
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP-~~l~-~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLP-ENLQ-GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCC-hhhc-cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            457889999988884 454443  57999999999998544 3332 24999999999998 4566554  479999999


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            99998 6677664  58999999999998 5676553  589999999999984 454332  478999999999984 4


Q ss_pred             hhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCC
Q 005361          252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK  331 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  331 (700)
                      |..+  .++|+.|++++|.+...  |..-.++|+.|+|++|+|+ .+|..+  .++|+.|+|++|+|+ .+|..+.  ..
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~L--P~~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~s  389 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTSL--PASLPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AA  389 (754)
T ss_pred             Cccc--cccceeccccCCccccC--ChhhcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HH
Confidence            5433  36899999999876653  3211268999999999998 466554  368999999999999 4565554  36


Q ss_pred             CCEEEccCCcCCCCCchhhh------cCCCeeeeecCccc
Q 005361          332 TNFMYLTGNKLTGPVPKYIF------NSNKNVDISLNNFT  365 (700)
Q Consensus       332 L~~L~L~~N~l~~~ip~~~~------~~l~~L~ls~N~l~  365 (700)
                      |+.|++++|+|+ .+|..+.      +.+..|++.+|+++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            899999999998 6776542      34678999999775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=1.3e-17  Score=187.46  Aligned_cols=256  Identities=26%  Similarity=0.343  Sum_probs=193.7

Q ss_pred             EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      -..|+|+.+.++ .+|+.+.  ++|+.|++++|+++.. |.   .++ |++|++++|+++. +|..   .++|+.|+|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            457899999998 5676665  4899999999999964 43   234 9999999999994 5543   46899999999


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      |.+. .+|..   ..+|+.|++++|+++ .+|.   .+++|+.|+|++|++++ +|..   ..+|+.|++++|.++. +|
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence            9988 45543   357889999999998 4554   35789999999999985 4442   3468899999999984 55


Q ss_pred             hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCC
Q 005361          253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT  332 (700)
Q Consensus       253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  332 (700)
                      .   -..+|+.|++++|.+...  |.+ ..+|+.|++++|+|+. +|..   ..+|+.|+|++|+|++ +|..   .++|
T Consensus       339 ~---lp~~Lq~LdLS~N~Ls~L--P~l-p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L  404 (788)
T PRK15387        339 T---LPSGLQELSVSDNQLASL--PTL-PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSEL  404 (788)
T ss_pred             c---cccccceEecCCCccCCC--CCC-Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCC
Confidence            3   235899999999888753  332 2689999999999994 5543   3679999999999995 5543   4689


Q ss_pred             CEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCC
Q 005361          333 NFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDK  394 (700)
Q Consensus       333 ~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~  394 (700)
                      +.|++++|+|+ .+|.. ...++.|++++|.++ .+|..+ |.+..   +..+....|.+..
T Consensus       405 ~~LdLS~N~Ls-sIP~l-~~~L~~L~Ls~NqLt-~LP~sl-~~L~~---L~~LdLs~N~Ls~  459 (788)
T PRK15387        405 KELMVSGNRLT-SLPML-PSGLLSLSVYRNQLT-RLPESL-IHLSS---ETTVNLEGNPLSE  459 (788)
T ss_pred             CEEEccCCcCC-CCCcc-hhhhhhhhhccCccc-ccChHH-hhccC---CCeEECCCCCCCc
Confidence            99999999998 57753 457889999999998 678776 44332   3345555666653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.74  E-value=7.7e-20  Score=181.34  Aligned_cols=255  Identities=21%  Similarity=0.228  Sum_probs=196.0

Q ss_pred             CCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEe
Q 005361          117 YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLIL  194 (700)
Q Consensus       117 ~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L  194 (700)
                      .-..+.|..|.|+.+++.+|+.++ |+.|||++|.|+.+-|+.|.++++|..|-+-+ |+|+......|.+|..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567889999999999999999999 99999999999999999999999988887766 9999766678999999999999


Q ss_pred             eecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC------------CchhhhhcCCCCC
Q 005361          195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG------------PIPASISALTSLT  262 (700)
Q Consensus       195 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~  262 (700)
                      .-|++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+++..|.+..            ..|..++...-..
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            9999998888999999999999999999985555588999999999999987432            1122222222222


Q ss_pred             EEEcCCCCCCCCcccccCc--cCccEEEcccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccC
Q 005361          263 DLRISDLKGSESAFPKLDK--MNLKTLILTKCLIHGEIP-DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG  339 (700)
Q Consensus       263 ~L~l~~n~~~~~~~~~l~~--~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  339 (700)
                      -..+....+.......+..  ..+..--.+.+...+.-| ..|..+++|+.|+|++|+|+++.+.+|+.+..+++|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            2222221221111111111  122111223333444444 4799999999999999999999999999999999999999


Q ss_pred             CcCCCCCchhhhc---CCCeeeeecCcccccCCCCC
Q 005361          340 NKLTGPVPKYIFN---SNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       340 N~l~~~ip~~~~~---~l~~L~ls~N~l~~~~p~~~  372 (700)
                      |+|. .+...++.   .++.|+|.+|+++...|-.|
T Consensus       308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             chHH-HHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            9998 67777765   57899999999997777666

>PLN03210 Resistant to P

Probab=99.74  E-value=7.6e-17  Score=195.09  Aligned_cols=258  Identities=21%  Similarity=0.296  Sum_probs=147.3

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      +++.|+|.++.+. .++..+..+++|+.|+|+++.....+|. +..++ |++|+|++|.....+|..+.++++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4555555555544 3444455566666666665543334443 33444 6666666655444566666666666666666


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhh--------------------
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI--------------------  231 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--------------------  231 (700)
                      +|.....+|..+ ++++|+.|+|++|.....+|..   ..+|+.|++++|.+. .+|..+                    
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence            654444555443 5566666666665443333321   245566666666554 223211                    


Q ss_pred             ----------cCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccc-cCccCccEEEcccCCCCCCCch
Q 005361          232 ----------GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK-LDKMNLKTLILTKCLIHGEIPD  300 (700)
Q Consensus       232 ----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~~~L~~L~L~~n~l~~~~p~  300 (700)
                                ..+++|+.|+|++|.....+|..+.++++|+.|++++|..... +|. ...++|+.|+|++|..-..+|.
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCCCCccccCEEECCCCCccccccc
Confidence                      1124566777777766666777777777777777776543322 232 2236777777777654434443


Q ss_pred             hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC-cCCCCCchhh--hcCCCeeeeecCc
Q 005361          301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN-KLTGPVPKYI--FNSNKNVDISLNN  363 (700)
Q Consensus       301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~ip~~~--~~~l~~L~ls~N~  363 (700)
                      .   .++|+.|+|++|.++ .+|..+..+++|+.|+|++| ++. .+|..+  +..++.++++++.
T Consensus       844 ~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 I---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            2   356777777777777 56777777777888877774 444 455443  2356666766653

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.3e-18  Score=182.58  Aligned_cols=268  Identities=19%  Similarity=0.237  Sum_probs=177.3

Q ss_pred             EEEecCCCCC-CcCchhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCCCCCC------CCchhcCCCC
Q 005361           96 TIALKAQNLT-GTLPTELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGNRLSG------PFPKVLTNIT  163 (700)
Q Consensus        96 ~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n~l~~------~~p~~~~~l~  163 (700)
                      .|+|..+.++ ......+..+++|+.|+++++.++..    ++..+...+ +++|+++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566667666 33445566777788888888887542    333444455 8888888877662      2345667788


Q ss_pred             CCCEEEccCCcCCCCCCccccCCCC---ccEEEeeecCCCC----cCchhhhCC-CCCcEEEeecCcCCCC----Chhhh
Q 005361          164 TLKNLSIEGNLFTGSIPPDIRKLIN---LQKLILSSNSFTG----ELPAELTKL-TNLNDLRISDNNFSGK----IPEFI  231 (700)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l  231 (700)
                      +|++|+|++|.+....+..+..+.+   |++|++++|.++.    .+...+..+ ++|+.|++++|.+++.    +...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8888888888887655555555555   8888888888773    233445566 8888888888888743    33455


Q ss_pred             cCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCCCCchhh
Q 005361          232 GKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHGEIPDYI  302 (700)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~p~~~  302 (700)
                      ..+++|+.|++++|.+.+.    ++..+..+++|+.|++++|.+.......    +.. ++|+.|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            6667888888888888742    3334556678888888887665433222    233 678888888888775322222


Q ss_pred             c-----CCCCCCEEeccCCCCCC----CChhhHhcCCCCCEEEccCCcCCCC----Cchhhh---cCCCeeeeecCc
Q 005361          303 G-----DMTKLKNIDLSFNNLTG----GIPTTFEKLAKTNFMYLTGNKLTGP----VPKYIF---NSNKNVDISLNN  363 (700)
Q Consensus       303 ~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----ip~~~~---~~l~~L~ls~N~  363 (700)
                      .     ..+.|+.|++++|.++.    .+...+..+++|+.+++++|.++..    +...+.   ..++.+++.+|+
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            1     23688888888888862    2334566667888888888888743    222221   356677777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.73  E-value=9.6e-17  Score=194.20  Aligned_cols=255  Identities=23%  Similarity=0.284  Sum_probs=145.9

Q ss_pred             cCchhhcCCC-CCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361          107 TLPTELSKLR-YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK  185 (700)
Q Consensus       107 ~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  185 (700)
                      .+|..|..++ +|+.|.+.++.+. .+|..+..-.|+.|++.+|.+. .++..+..+++|++|+|+++.....+| .+..
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~  655 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM  655 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence            3455555543 4666666666554 3344443333666666666655 445555666666666666554333444 3555


Q ss_pred             CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEE
Q 005361          186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR  265 (700)
Q Consensus       186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  265 (700)
                      +++|+.|+|++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|..   ..+|+.|+
T Consensus       656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~  731 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD  731 (1153)
T ss_pred             CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence            6666666666655444566666666666666666554333444433 4555666666555433333321   23444555


Q ss_pred             cCCCCCCCCcc---------------------------cc--c-CccCccEEEcccCCCCCCCchhhcCCCCCCEEeccC
Q 005361          266 ISDLKGSESAF---------------------------PK--L-DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSF  315 (700)
Q Consensus       266 l~~n~~~~~~~---------------------------~~--l-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  315 (700)
                      +++|.+...+.                           +.  . ..++|+.|+|++|.....+|..+..+++|+.|+|++
T Consensus       732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~  811 (1153)
T PLN03210        732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN  811 (1153)
T ss_pred             cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence            54443322110                           00  0 115788888888877767888888888888888888


Q ss_pred             CCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCC
Q 005361          316 NNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       316 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~  371 (700)
                      |...+.+|..+ ++++|+.|+|++|.....+|.. ..+++.|+|++|.+. .+|.+
T Consensus       812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-~~nL~~L~Ls~n~i~-~iP~s  864 (1153)
T PLN03210        812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-STNISDLNLSRTGIE-EVPWW  864 (1153)
T ss_pred             CCCcCeeCCCC-CccccCEEECCCCCcccccccc-ccccCEeECCCCCCc-cChHH
Confidence            75444666554 6777788888777554455542 346677777777665 34443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.71  E-value=5.5e-19  Score=192.40  Aligned_cols=240  Identities=27%  Similarity=0.324  Sum_probs=122.6

Q ss_pred             CCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEee
Q 005361          117 YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILS  195 (700)
Q Consensus       117 ~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  195 (700)
                      +|++++++.|++++.. +.+.... |+.|...+|+++ .+|..+..+.+|+.|.+.+|.+. .+|.....++.|++|+|.
T Consensus       242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            3444444444444322 3333333 444444444443 34444444444444444444444 334444444445555554


Q ss_pred             ecCCCCcCch-hhhCCCC-CcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361          196 SNSFTGELPA-ELTKLTN-LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE  273 (700)
Q Consensus       196 ~n~l~~~~~~-~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  273 (700)
                      .|.+. .+|+ .+..+.. |+.|+.+.|.+.....-.=..++.|+.|.+.+|.++...-+.+.+..+|+.|+|++|.+..
T Consensus       319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            44444 2222 1221111 3333333333331110001123446666666666666555556666666666666665555


Q ss_pred             CcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC-CCchhhh
Q 005361          274 SAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG-PVPKYIF  351 (700)
Q Consensus       274 ~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~ip~~~~  351 (700)
                      .+-..+.. ..|++|+|++|+++ .+|+....++.|++|...+|+|. ..| .+..+++|+.+|++.|+++- .+|...-
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            44444444 56666666666666 55566666666666666666666 445 56677777777777777752 3444443


Q ss_pred             -cCCCeeeeecCc
Q 005361          352 -NSNKNVDISLNN  363 (700)
Q Consensus       352 -~~l~~L~ls~N~  363 (700)
                       ++|++|||++|.
T Consensus       475 ~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNT  487 (1081)
T ss_pred             CcccceeeccCCc
Confidence             567777777774

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.68  E-value=1.3e-18  Score=189.46  Aligned_cols=261  Identities=23%  Similarity=0.315  Sum_probs=161.9

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCC---------------------C
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSG---------------------P  154 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~---------------------~  154 (700)
                      .|+|.+|.+.   ...+..+++|+.|....|++....   .....|+.|+.++|.++.                     .
T Consensus       182 ~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~  255 (1081)
T KOG0618|consen  182 QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN  255 (1081)
T ss_pred             eeecccchhh---hhhhhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeeccccccccceeeecchhhhhc
Confidence            4777777765   223455566666666555554221   112224444444444442                     2


Q ss_pred             CchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCC
Q 005361          155 FPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW  234 (700)
Q Consensus       155 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  234 (700)
                      +|+.+..+.+|+.|...+|+++ .+|..+....+|+.|.+..|.++ -+|.....++.|++|+|..|++....+..+..+
T Consensus       256 lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~  333 (1081)
T KOG0618|consen  256 LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL  333 (1081)
T ss_pred             chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhh
Confidence            3344444444444444444443 34444444444444444444444 333334444555555555555542222222222


Q ss_pred             Cc-ccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEe
Q 005361          235 KK-IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNID  312 (700)
Q Consensus       235 ~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  312 (700)
                      .. |+.|+.+.|.+.......=...+.|+.|++.+|.+.+..+|.+.. ..|+.|+|++|+|...+...+.+++.|++|+
T Consensus       334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~  413 (1081)
T KOG0618|consen  334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN  413 (1081)
T ss_pred             hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence            22 444444444443211111122355778889999999999999888 9999999999999966666788999999999


Q ss_pred             ccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh-hcCCCeeeeecCcccc
Q 005361          313 LSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI-FNSNKNVDISLNNFTW  366 (700)
Q Consensus       313 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~-~~~l~~L~ls~N~l~~  366 (700)
                      ||+|+++ .+|.++..++.|++|...+|++. ..|+.. .+.++.+|++.|+++.
T Consensus       414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             cccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhh
Confidence            9999999 78899999999999999999998 777433 4578999999998874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=3.2e-17  Score=172.16  Aligned_cols=250  Identities=20%  Similarity=0.281  Sum_probs=189.9

Q ss_pred             cEEEEEecCCCCCCc----CchhhcCCCCCCEEECcCCCCCC------Cccccccccc-ccEEEccCCCCCCCCchhcCC
Q 005361           93 HVVTIALKAQNLTGT----LPTELSKLRYLKQLDLSRNCLTG------SFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN  161 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~  161 (700)
                      +++.|+++++.++..    ++..+...+.|+.|+++++.+.+      .++..+..++ |+.|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            489999999988543    55567788899999999998763      2334555566 999999999998666666655


Q ss_pred             CCC---CCEEEccCCcCCC----CCCccccCC-CCccEEEeeecCCCCc----CchhhhCCCCCcEEEeecCcCCCC---
Q 005361          162 ITT---LKNLSIEGNLFTG----SIPPDIRKL-INLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGK---  226 (700)
Q Consensus       162 l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  226 (700)
                      +.+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+++.    +...+..+++|++|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            555   9999999999873    223345666 8999999999999843    344577788999999999999842   


Q ss_pred             -ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCccccc----C--ccCccEEEcccCCCC
Q 005361          227 -IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKL----D--KMNLKTLILTKCLIH  295 (700)
Q Consensus       227 -~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~--~~~L~~L~L~~n~l~  295 (700)
                       ++..+..+++|+.|++++|.+.+.    +...+..+++|+.|++++|.+....+..+    .  ...|++|++++|.++
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             334456667999999999998753    34456678899999999988765333221    1  269999999999997


Q ss_pred             C----CCchhhcCCCCCCEEeccCCCCCCC----ChhhHhcC-CCCCEEEccCCcC
Q 005361          296 G----EIPDYIGDMTKLKNIDLSFNNLTGG----IPTTFEKL-AKTNFMYLTGNKL  342 (700)
Q Consensus       296 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l  342 (700)
                      .    .+...+..+++|+.|++++|.++..    ....+... +.|+.|++.+|.+
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2    2344566678999999999999955    34455555 7899999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.2e-18  Score=151.99  Aligned_cols=161  Identities=30%  Similarity=0.513  Sum_probs=140.3

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|.|+.|.++ .+|+.+..+.+|+.|++++|+++ ..|..++.++ |+.|++.-|++. ..|..|+.+|.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            458999999999998 55667999999999999999998 4566777777 999999999988 8899999999999999


Q ss_pred             ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      |.+|++.. .+|..|..+..|+-|.|+.|.+. .+|..++.+++|+.|.+.+|.+- .+|..++.++.|++|++++|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            99999874 57888999999999999999998 88888999999999999999887 78889999999999999999998


Q ss_pred             CCchhhhhc
Q 005361          249 GPIPASISA  257 (700)
Q Consensus       249 ~~~~~~~~~  257 (700)
                       .+|..+++
T Consensus       187 -vlppel~~  194 (264)
T KOG0617|consen  187 -VLPPELAN  194 (264)
T ss_pred             -ecChhhhh
Confidence             45555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=5e-18  Score=149.81  Aligned_cols=178  Identities=26%  Similarity=0.468  Sum_probs=131.4

Q ss_pred             cCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc
Q 005361          159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ  238 (700)
Q Consensus       159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  238 (700)
                      +.++.+++.|.|++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|++.-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445667777888888887 66777788888888888888887 67777788888888888877776 6677777777777


Q ss_pred             EEEccCCCCCC-CchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCC
Q 005361          239 KLHIQGSSLEG-PIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNN  317 (700)
Q Consensus       239 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  317 (700)
                      .|||.+|.+.. .+|..|..+.                       .|+-|+|+.|.+. .+|...+.+++|+.|.+..|.
T Consensus       106 vldltynnl~e~~lpgnff~m~-----------------------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMT-----------------------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhccccccccccCCcchhHHH-----------------------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            77777776653 3444444444                       4455555667776 777788999999999999999


Q ss_pred             CCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc-----CCCeeeeecCccc
Q 005361          318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN-----SNKNVDISLNNFT  365 (700)
Q Consensus       318 l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~-----~l~~L~ls~N~l~  365 (700)
                      +- .+|..++.+.+|++|++.+|+++ .+|+.+..     +-+.+.+.+|++.
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            88 78888999999999999999998 67766542     2234455556443

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=5.8e-13  Score=150.69  Aligned_cols=152  Identities=31%  Similarity=0.590  Sum_probs=110.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCC-CCCcccCCCCCCCCCCeeeCCCCC--cCcEEEEEecCCCCCCc
Q 005361           34 NKLHAEEVKALKQIGRKLGKK---DWNFGVDPCSQK-GNWELSSDDKKGFESNVTCDCSSA--TCHVVTIALKAQNLTGT  107 (700)
Q Consensus        34 ~~~~~~e~~al~~l~~~~~~~---~w~~~~d~C~~~-~~w~~~~~~~~~~~~~v~C~~~~~--~~~v~~L~L~~~~l~~~  107 (700)
                      ..+.+.|.+||..+++.++..   +|.  .|+|... ..|           .||.|.....  ...|+.|+|+++.+.|.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~--g~~C~p~~~~w-----------~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~  433 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLRFGWN--GDPCVPQQHPW-----------SGADCQFDSTKGKWFIDGLGLDNQGLRGF  433 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcccCCCC--CCCCCCccccc-----------ccceeeccCCCCceEEEEEECCCCCcccc
Confidence            456778999999999998752   685  4677421 247           8999953221  23689999999999999


Q ss_pred             CchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361          108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL  186 (700)
Q Consensus       108 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  186 (700)
                      +|..+.++++|+.|+|++|.+.+.+|..+..++ |+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..+..+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            999999999999999999988887777777666 7777777777777777777777777777777777776666665542


Q ss_pred             -CCccEEEeeecC
Q 005361          187 -INLQKLILSSNS  198 (700)
Q Consensus       187 -~~L~~L~L~~n~  198 (700)
                       .++..+++.+|.
T Consensus       514 ~~~~~~l~~~~N~  526 (623)
T PLN03150        514 LLHRASFNFTDNA  526 (623)
T ss_pred             cccCceEEecCCc
Confidence             344455555553

>PLN03150 hypothetical protein; Provisional

Probab=99.43  E-value=9e-13  Score=149.13  Aligned_cols=95  Identities=36%  Similarity=0.393  Sum_probs=82.1

Q ss_pred             ccchhhhhhhccCC---ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccchhcCCcC
Q 005361          482 AVDLELYRTARVSP---LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTG  558 (700)
Q Consensus       482 ~~~~~ly~tar~~~---~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~~~~~~~  558 (700)
                      .+|..||+|||.+.   .+++|.+.++++|.|.||||||||..    .....++|+|+||||++.+.+++|+...+++..
T Consensus       249 ~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~----~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~  324 (623)
T PLN03150        249 FYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDN----SITAEGKRVFDVLINGDTAFKDVDIVKMSGERY  324 (623)
T ss_pred             cChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccC----ccCCCceEEEEEEECCEEeecccChhhhcCCcc
Confidence            56899999999987   48999999999999999999999942    223568999999999999999999998888888


Q ss_pred             ccEEEeeEEEecCCccEEEEEE
Q 005361          559 IPIVKNFPAEVTSHTLKIHLYW  580 (700)
Q Consensus       559 ~p~~~df~v~~~~~~~~i~~~~  580 (700)
                      .|+|++|.+.+++..+.|.+..
T Consensus       325 ~~~~~~~~v~~~~g~l~isl~p  346 (623)
T PLN03150        325 TALVLNKTVAVSGRTLTIVLQP  346 (623)
T ss_pred             cceEEEeEEeecCCeEEEEEee
Confidence            9999999998887656666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=2.9e-13  Score=140.94  Aligned_cols=198  Identities=28%  Similarity=0.406  Sum_probs=137.8

Q ss_pred             EECcCCCCCCCcccccc-ccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361          121 LDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS  198 (700)
Q Consensus       121 L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (700)
                      |.|++-.+...+-.... .+. -...||+.|++. .+|..+..+..|+.|.|..|.+. .+|..+.++..|++|+|+.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            44444444433222222 233 556788888887 67877777888888888888887 788888899999999999998


Q ss_pred             CCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccc
Q 005361          199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK  278 (700)
Q Consensus       199 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  278 (700)
                      ++ .+|..+..|+ |+.|-+++|+++ .+|..++.++.|..|+.+.|.+. .+|..+..+.+|+.|.+..|+..      
T Consensus       133 lS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~------  202 (722)
T KOG0532|consen  133 LS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE------  202 (722)
T ss_pred             hh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh------
Confidence            88 6777777775 788888888887 67777888888888998888887 57777888887777776664433      


Q ss_pred             cCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361          279 LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF  351 (700)
Q Consensus       279 l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~  351 (700)
                                        .+|..+..| .|..||+|.|+++ .+|-.|.+|..|++|-|.+|.++ +.|..++
T Consensus       203 ------------------~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  203 ------------------DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             ------------------hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence                              233334433 2556666666665 55556666666666666666665 4444443

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=99.25  E-value=1.9e-11  Score=128.14  Aligned_cols=91  Identities=31%  Similarity=0.401  Sum_probs=74.5

Q ss_pred             ccchhhhhhhccCC-----ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccch-hcC
Q 005361          482 AVDLELYRTARVSP-----LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIED-EAG  555 (700)
Q Consensus       482 ~~~~~ly~tar~~~-----~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~-~~~  555 (700)
                      .+|.+||+|||.+.     .+++|.+ ++++..|.||||||||+..    ....++|+|+||||++.+.+  |+.. ..+
T Consensus       231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~----~~~~~~R~F~IyiN~~~~~~--~~~~~~~~  303 (347)
T PF12819_consen  231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSL----SPNNNQREFDIYINGQTAYS--DVSPPYLG  303 (347)
T ss_pred             cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccc----cCCCCeEEEEEEECCeEccC--ccCccccc
Confidence            78999999999975     6899999 9999999999999999532    23566899999999999987  5554 456


Q ss_pred             CcCccEEEeeEEEecCCc-cEEEEE
Q 005361          556 GTGIPIVKNFPAEVTSHT-LKIHLY  579 (700)
Q Consensus       556 ~~~~p~~~df~v~~~~~~-~~i~~~  579 (700)
                      +...|+|+||++.+++.. +.|.+.
T Consensus       304 ~~~~~~~~d~~~~~~~~~~~~isL~  328 (347)
T PF12819_consen  304 ADTVPYYSDYVVNVPDSGFLNISLG  328 (347)
T ss_pred             CcceEeecceEEEecCCCEEEEEEE
Confidence            678899999999988764 444443

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=4.7e-13  Score=139.34  Aligned_cols=181  Identities=26%  Similarity=0.403  Sum_probs=149.8

Q ss_pred             CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361          114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL  192 (700)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (700)
                      .+..-...||+.|++.. +|..+..+. |+.|.|..|.+. .+|..+.++..|.+|+|+.|+++ .+|..++.|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            45556678999999984 555555555 999999999998 78999999999999999999999 7888888775 8999


Q ss_pred             EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361          193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS  272 (700)
Q Consensus       193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  272 (700)
                      .+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+..|              
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--------------  211 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--------------  211 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--------------
Confidence            99999998 78888999999999999999998 77888999999999999999998 456555543              


Q ss_pred             CCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361          273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE  327 (700)
Q Consensus       273 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  327 (700)
                                .|..||++.|+++ .+|-.|..|+.|++|.|.+|.|. ..|..+.
T Consensus       212 ----------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  212 ----------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             ----------ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence                      3556677777777 77888888888888888888888 4555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=3.2e-11  Score=130.46  Aligned_cols=200  Identities=30%  Similarity=0.463  Sum_probs=118.7

Q ss_pred             EEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCC-CccEEEeeecCCCCcCchhhhCCCCCcEEEeecC
Q 005361          143 ELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI-NLQKLILSSNSFTGELPAELTKLTNLNDLRISDN  221 (700)
Q Consensus       143 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  221 (700)
                      .|++..|.+.. ....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555531 2223444566777777777766 4455555553 6777777777766 44455666777777777777


Q ss_pred             cCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchh
Q 005361          222 NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDY  301 (700)
Q Consensus       222 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~  301 (700)
                      +++ .+|...+..++|+.|++++|.+. .+|.....+..|++|.+++|.........-...++..|.+.+|++. .++..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence            776 44444446667777777777776 4555444555566666666532221111111145555556666665 33555


Q ss_pred             hcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361          302 IGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       302 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~  350 (700)
                      +..+++|+.|++++|+++....  +..+.+|+.|++++|.++..+|...
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            6667777777777777773333  6677777777777777775555433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.4e-10  Score=125.46  Aligned_cols=198  Identities=31%  Similarity=0.469  Sum_probs=148.6

Q ss_pred             EEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCC-CCCEEEccCCcCCCCCCccccCCCCccEEEeeec
Q 005361          120 QLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN  197 (700)
Q Consensus       120 ~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  197 (700)
                      .|+++.|.+...... ...+. ++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            577777776433333 23334 888899999888 5555566664 8999999999988 56667888999999999999


Q ss_pred             CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCccc
Q 005361          198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP  277 (700)
Q Consensus       198 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  277 (700)
                      .++ .++.....+++|+.|++++|+++ .+|........|++|.+++|.+. ..+..+..+.++..|.+.+|.+... ..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence            988 56665557889999999999988 56665556667999999998644 4666788888888888777665543 12


Q ss_pred             ccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361          278 KLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF  326 (700)
Q Consensus       278 ~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  326 (700)
                      .+.. .+++.|++++|.++....  +..+.+|+.|++++|.+....|...
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            2333 679999999999985444  8888999999999999997666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.6e-11  Score=121.91  Aligned_cols=136  Identities=20%  Similarity=0.194  Sum_probs=67.3

Q ss_pred             CCCCcEEEeecCcCCCC-ChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc-ccccCc-cCccE
Q 005361          210 LTNLNDLRISDNNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA-FPKLDK-MNLKT  286 (700)
Q Consensus       210 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~-~~L~~  286 (700)
                      ++.|+.|.|+.|.++.. +...+..+|+|+.|+|..|............+..|+.|+|++|++.+.. ++.... +.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            34444444444444411 1122233444555555444321122222333444455555544443322 122222 45555


Q ss_pred             EEcccCCCCCC-Cchh-----hcCCCCCCEEeccCCCCCCCC-hhhHhcCCCCCEEEccCCcCCCC
Q 005361          287 LILTKCLIHGE-IPDY-----IGDMTKLKNIDLSFNNLTGGI-PTTFEKLAKTNFMYLTGNKLTGP  345 (700)
Q Consensus       287 L~L~~n~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~  345 (700)
                      |+++.+.+... .|+.     ...+++|+.|+++.|+|.... -..+..+++|+.|....|.++.+
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            55555555432 2222     345688889999999886321 13456677888888888888743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=5.3e-11  Score=114.77  Aligned_cols=222  Identities=23%  Similarity=0.243  Sum_probs=122.8

Q ss_pred             cEEEEEecCC--------CCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCC
Q 005361           93 HVVTIALKAQ--------NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITT  164 (700)
Q Consensus        93 ~v~~L~L~~~--------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~  164 (700)
                      ++..|..+..        -+...+|-.+.-+++|+.+.++.+.-..+..-......|+++...+..+.. .| .+-.+..
T Consensus       183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~  260 (490)
T KOG1259|consen  183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETI  260 (490)
T ss_pred             heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-cc-cccchhh
Confidence            5666666532        223345555666788888888877544333222333337777776655441 11 1111111


Q ss_pred             CCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361          165 LKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       165 L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  243 (700)
                      +.-+.-+. ....|..-........|++|||++|.|+ .+.++..-+|.++.|+++.|.+.. + +.+..+++|+.|||+
T Consensus       261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS  337 (490)
T KOG1259|consen  261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLS  337 (490)
T ss_pred             hcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecc
Confidence            11111110 1111222222333456777777777776 455556666777777777777652 2 226666677777777


Q ss_pred             CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCC-
Q 005361          244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI-  322 (700)
Q Consensus       244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-  322 (700)
                      +|.++. +...-..+.                       ++++|.|+.|.|...  +.+..+-+|..||+++|+|.... 
T Consensus       338 ~N~Ls~-~~Gwh~KLG-----------------------NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde  391 (490)
T KOG1259|consen  338 GNLLAE-CVGWHLKLG-----------------------NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE  391 (490)
T ss_pred             cchhHh-hhhhHhhhc-----------------------CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH
Confidence            776652 222222333                       445555555555411  23556677888899999887322 


Q ss_pred             hhhHhcCCCCCEEEccCCcCCCC
Q 005361          323 PTTFEKLAKTNFMYLTGNKLTGP  345 (700)
Q Consensus       323 p~~~~~l~~L~~L~L~~N~l~~~  345 (700)
                      -..++++|.|+.|.|.+|.+.+.
T Consensus       392 V~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  392 VNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hcccccccHHHHHhhcCCCcccc
Confidence            23578889999999999999843

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=5.9e-11  Score=117.36  Aligned_cols=229  Identities=17%  Similarity=0.256  Sum_probs=126.4

Q ss_pred             CcEEEEEecCCCCCC----cCchhhcCCCCCCEEECcCC---CCCCCcccccc-------cc-cccEEEccCCCCCCCCc
Q 005361           92 CHVVTIALKAQNLTG----TLPTELSKLRYLKQLDLSRN---CLTGSFSPQWA-------SL-QLVELSVMGNRLSGPFP  156 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n---~l~~~~~~~~~-------~l-~L~~L~L~~n~l~~~~p  156 (700)
                      ..++.|+|++|.+..    .+...+.+.++|+..++++-   ++...+|+.+.       .. +|++|+||+|-+...-+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            468899999998853    35556778888998888753   22333443332       22 37777777777653333


Q ss_pred             hh----cCCCCCCCEEEccCCcCCCCCC-------------ccccCCCCccEEEeeecCCCCc----CchhhhCCCCCcE
Q 005361          157 KV----LTNITTLKNLSIEGNLFTGSIP-------------PDIRKLINLQKLILSSNSFTGE----LPAELTKLTNLND  215 (700)
Q Consensus       157 ~~----~~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~  215 (700)
                      ..    +..+..|++|.|.+|.+...--             .....-++|+.+...+|++...    +...|...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            32    3456677777777776551100             1112234566666666655421    1223445555666


Q ss_pred             EEeecCcCCCC----ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEE
Q 005361          216 LRISDNNFSGK----IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTL  287 (700)
Q Consensus       216 L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L  287 (700)
                      +.+..|.+...    +...+..+++|+.|||..|.++..    +...+..+++|+.|                       
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El-----------------------  246 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL-----------------------  246 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee-----------------------
Confidence            66665555311    122344555555555555555432    22233344444444                       


Q ss_pred             EcccCCCCCCCchh----h-cCCCCCCEEeccCCCCCCC----ChhhHhcCCCCCEEEccCCcCC
Q 005361          288 ILTKCLIHGEIPDY----I-GDMTKLKNIDLSFNNLTGG----IPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       288 ~L~~n~l~~~~p~~----~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      +++.|.+...-...    + ...|+|+.|.|.+|.|+..    +-..+...+.|..|+|++|.+.
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            45555544322211    1 2357788888888887732    2233455778888888888883

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=9.4e-11  Score=118.98  Aligned_cols=183  Identities=18%  Similarity=0.180  Sum_probs=98.1

Q ss_pred             CCCCCCEEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCc--CchhhhCCCCCcEEEeecCcCCCCChhh-hcCCCc
Q 005361          161 NITTLKNLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGE--LPAELTKLTNLNDLRISDNNFSGKIPEF-IGKWKK  236 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~  236 (700)
                      ++.+|++..|.+..+..... .....|++++.|||+.|-+...  +......||+|+.|+|+.|++....... -..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45566666666665542111 2344566666666666655532  1223445666777777766664221111 124556


Q ss_pred             ccEEEccCCCCCCC-chhhhhcCCCCCEEEcCCCCC-CCCcccccCccCccEEEcccCCCCCCC-chhhcCCCCCCEEec
Q 005361          237 IQKLHIQGSSLEGP-IPASISALTSLTDLRISDLKG-SESAFPKLDKMNLKTLILTKCLIHGEI-PDYIGDMTKLKNIDL  313 (700)
Q Consensus       237 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L  313 (700)
                      |+.|.|+.|.++.. +...+..+++|+.|+|..|+. .....+.-....|++|+|++|++-... -...+.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            77777777776631 223345567777777776632 211111111156777777777665221 123456677777777


Q ss_pred             cCCCCCCCC-hhh-----HhcCCCCCEEEccCCcCC
Q 005361          314 SFNNLTGGI-PTT-----FEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       314 s~N~l~~~~-p~~-----~~~l~~L~~L~L~~N~l~  343 (700)
                      +.+.+...- |+.     ...+++|+.|++..|++.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            777666321 221     245567777777777764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.94  E-value=2e-10  Score=113.69  Aligned_cols=245  Identities=19%  Similarity=0.246  Sum_probs=135.0

Q ss_pred             hhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCC---CCCCCCchh-------cCCCCCCCEEEccCCc
Q 005361          110 TELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGN---RLSGPFPKV-------LTNITTLKNLSIEGNL  174 (700)
Q Consensus       110 ~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n---~l~~~~p~~-------~~~l~~L~~L~L~~n~  174 (700)
                      +.+..+..++.|+|++|.+...    +...+...+ |+..++++-   ++...+|+.       +...++|++|+||.|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3455677788888888877532    233344444 666666542   112223332       2344556666666665


Q ss_pred             CCCCCCccc----cCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          175 FTGSIPPDI----RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       175 l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      +...-+..|    ..+..|++|.|.+|.+...--..++.  .|.+|.         .....+.-++|+.+...+|++...
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence            543222222    23445555555555443110000000  000000         001123345666666666665432


Q ss_pred             ----chhhhhcCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCC----CCchhhcCCCCCCEEeccCCC
Q 005361          251 ----IPASISALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHG----EIPDYIGDMTKLKNIDLSFNN  317 (700)
Q Consensus       251 ----~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~  317 (700)
                          +...|...+.|+.+.+..|.+.......    +.. ++|+.|||..|.++.    .+...+..+++|+.|++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                2234555566666666666554443321    233 677777777777764    234567788999999999999


Q ss_pred             CCCCChhhH-----hcCCCCCEEEccCCcCCCCCchhh------hcCCCeeeeecCccc
Q 005361          318 LTGGIPTTF-----EKLAKTNFMYLTGNKLTGPVPKYI------FNSNKNVDISLNNFT  365 (700)
Q Consensus       318 l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~ip~~~------~~~l~~L~ls~N~l~  365 (700)
                      +...-...|     ...|+|+.|.|.+|.++..--..+      .+.+..|+|++|.+.
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            985443332     346899999999999974222111      246789999999884

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.4e-09  Score=101.26  Aligned_cols=122  Identities=28%  Similarity=0.349  Sum_probs=39.8

Q ss_pred             ccEEEccCCCCCCCCchhcC-CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhh-hCCCCCcEEEe
Q 005361          141 LVELSVMGNRLSGPFPKVLT-NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL-TKLTNLNDLRI  218 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L  218 (700)
                      +++|+|.+|.|+. + +.++ .+.+|+.|+|++|.++. + ..+..+++|+.|++++|.++. +...+ ..+++|++|++
T Consensus        21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence            5555555555552 2 1233 35566666666666663 2 245566667777777776663 33333 34667777777


Q ss_pred             ecCcCCCCC-hhhhcCCCcccEEEccCCCCCCCc---hhhhhcCCCCCEEEcC
Q 005361          219 SDNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPI---PASISALTSLTDLRIS  267 (700)
Q Consensus       219 ~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~  267 (700)
                      ++|++...- -..+..+++|+.|+|.+|+++...   ...+..+++|+.||-.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777665321 134556677777777777765321   1235667777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.84  E-value=1.7e-09  Score=100.69  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=41.7

Q ss_pred             cCCCCCCEEECcCCCCCCCcccccc-ccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccc-cCCCCc
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINL  189 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L  189 (700)
                      .+..++++|+|.+|.|+.+.  .++ .+. |+.|++++|.|+..  +.+..++.|++|++++|.++. +...+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            33445666666666666432  222 343 66667777766632  246667777777777777773 33333 357777


Q ss_pred             cEEEeeecCCCCcC-chhhhCCCCCcEEEeecCcCCCCC---hhhhcCCCcccEEEcc
Q 005361          190 QKLILSSNSFTGEL-PAELTKLTNLNDLRISDNNFSGKI---PEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       190 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~  243 (700)
                      +.|++++|+|...- -..+..+++|+.|+|.+|+++...   ...+..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            77777777776321 245667788888888888776321   1235667778877643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=1.6e-09  Score=104.80  Aligned_cols=130  Identities=18%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             hhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCC
Q 005361          230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKL  308 (700)
Q Consensus       230 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L  308 (700)
                      .+..++.|+.|||++|.++ .+.++..-++.++.|+++.|.+....  .+.. ++|+.|||++|.++ .+..+-..+-++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3445566777777777776 45566666677777777766554432  2444 67777788888777 444455567788


Q ss_pred             CEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCch--hh--hcCCCeeeeecCcccc
Q 005361          309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK--YI--FNSNKNVDISLNNFTW  366 (700)
Q Consensus       309 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~--~~--~~~l~~L~ls~N~l~~  366 (700)
                      +.|.|+.|.|..  -..+..+-+|..||+++|+|. .+..  .+  .+.++.+.|.+|++.+
T Consensus       355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccc
Confidence            888999888862  235667778888888888886 2221  11  2356677777776654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=1.4e-08  Score=117.85  Aligned_cols=149  Identities=21%  Similarity=0.268  Sum_probs=110.6

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCC--CCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC--LTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      ..++++.+-++.+.-. +.. ...+.|++|-+..|.  +.......|..++ |++|||++|.--+.+|..++.|-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4577777777766532 221 234578888888886  5656666788888 9999999887777899999999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc--CCCCChhhhcCCCcccEEEcc
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN--FSGKIPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~  243 (700)
                      +|+++.+. .+|..+.+|..|.+|++..+.....++.....|.+|++|.+....  .+...-..+..+.+|+.+...
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99999988 789999999999999999887665667777779999999986543  222233344555666666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=4.9e-09  Score=80.08  Aligned_cols=61  Identities=33%  Similarity=0.484  Sum_probs=55.6

Q ss_pred             cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcC
Q 005361          282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL  342 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  342 (700)
                      ++|++|++++|+++...+..|..+++|++|+|++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4788999999999977778999999999999999999988888999999999999999975

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=2.6e-08  Score=115.53  Aligned_cols=204  Identities=19%  Similarity=0.259  Sum_probs=142.9

Q ss_pred             cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCC--CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNR--LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ  190 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (700)
                      .+....+.+.+.+|.+.. ++.......|++|-+..|.  +.......|..|+.|+.|||++|.--+.+|..++.|-+|+
T Consensus       520 ~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             cchhheeEEEEeccchhh-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            445677888888887763 3334444469999999986  5556666788999999999999887789999999999999


Q ss_pred             EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC--CCCchhhhhcCCCCCEEEcCC
Q 005361          191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL--EGPIPASISALTSLTDLRISD  268 (700)
Q Consensus       191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~  268 (700)
                      +|++++..+. .+|..+.+|.+|.+|++..+.....++.....+++|++|.+.....  ....-..+..+.+|+.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999999998 8999999999999999998876656677778899999999976542  223333445566666655543


Q ss_pred             CCCCCCcccccCccC----ccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          269 LKGSESAFPKLDKMN----LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       269 n~~~~~~~~~l~~~~----L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      ... ....+......    .+.+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus       678 ~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  678 SSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             chh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            221 00001111122    223333333332 344556778888888888888763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=3.2e-09  Score=115.16  Aligned_cols=128  Identities=24%  Similarity=0.341  Sum_probs=66.0

Q ss_pred             CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361          114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL  192 (700)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (700)
                      .+..++.+.+..|.+.. +-..+..+. |+.|++.+|.|.. +...+..+++|++|+|++|.|+...  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhh
Confidence            34555555566665553 122233344 6666666666652 2222455666666666666665322  23445556666


Q ss_pred             EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCCh-hhhcCCCcccEEEccCCCCC
Q 005361          193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP-EFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  248 (700)
                      ++++|.++..  ..+..+++|+.+++++|++...-+ . ...+.+|+.+++.+|.+.
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            6666666521  223345566666666666553322 1 344555555666655554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=2.5e-08  Score=76.17  Aligned_cols=59  Identities=36%  Similarity=0.492  Sum_probs=27.8

Q ss_pred             CCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc
Q 005361          164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN  222 (700)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  222 (700)
                      +|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444555554443333344444445555555444444444444444444444444443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.59  E-value=3.5e-09  Score=114.82  Aligned_cols=192  Identities=26%  Similarity=0.261  Sum_probs=126.1

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      ++.+.+..|.+.. +-..+..+.+|..|++..|.+.. +...+..+++|++|++++|.|+...  .+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence            7777788888773 33446778889999999998884 3333677889999999999888543  355677788999999


Q ss_pred             CcCCCCChhhhcCCCcccEEEccCCCCCCCch-hhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCC
Q 005361          221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP-ASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEI  298 (700)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~  298 (700)
                      |.++..  ..+..++.|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+.....  +.. ..+..+++..|.++..-
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceecc
Confidence            988732  335557888888898888875433 2 4677777888777765543321  111 33444466666665322


Q ss_pred             chhhcCCC--CCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361          299 PDYIGDMT--KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       299 p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                      +.  ..+.  .|+.+++++|.+. ..+..+..+..+..|++.+|++..
T Consensus       225 ~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  225 GL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             Cc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence            21  1122  2677777777776 333455666677777777777653

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.57  E-value=3.1e-08  Score=104.42  Aligned_cols=38  Identities=39%  Similarity=0.682  Sum_probs=35.8

Q ss_pred             CCCCccHHHHHHHHcCCCcCCccccCCCcceeEEEeCC
Q 005361          662 QTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVML  699 (700)
Q Consensus       662 ~~~~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~d  699 (700)
                      ..+.|+|+||++||+||+++++||+||||.||||.|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~   98 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSD   98 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECC
Confidence            45679999999999999999999999999999999987

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=8.3e-08  Score=93.13  Aligned_cols=208  Identities=20%  Similarity=0.236  Sum_probs=114.9

Q ss_pred             hcCCCCCCEEECcCCCCCCCc-cccccc-cc-ccEEEccCCCCCC--CCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361          112 LSKLRYLKQLDLSRNCLTGSF-SPQWAS-LQ-LVELSVMGNRLSG--PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL  186 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~-L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  186 (700)
                      +..+..++.|.+.++.|...- ...|+. .+ ++.|||.+|.|+.  .+-.-+.+||.|+.|+|+.|++...+...-..+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~  120 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL  120 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence            344445666666666554221 112232 23 8889999998873  344456789999999999999884433222466


Q ss_pred             CCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCC--ChhhhcCC-CcccEEEccCCCCCC--CchhhhhcCCC
Q 005361          187 INLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGK--IPEFIGKW-KKIQKLHIQGSSLEG--PIPASISALTS  260 (700)
Q Consensus       187 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~  260 (700)
                      .+|+.|-|.+..+.-. ....+..+|.+++|.++.|.+...  ..+....+ +.++.|++..|....  .....-.-+++
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            7899999988877633 334567888888998888854311  11111222 245555555443221  01111123456


Q ss_pred             CCEEEcCCCCCCCCcccc-cCc-cCccEEEcccCCCCCC-CchhhcCCCCCCEEeccCCCCC
Q 005361          261 LTDLRISDLKGSESAFPK-LDK-MNLKTLILTKCLIHGE-IPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       261 L~~L~l~~n~~~~~~~~~-l~~-~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      +..+.+..+.+.+..-.. ... +.+..|+|+.|+|..- --+.+.+++.|..|.+++|.+.
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            666666665443322211 111 3444555666655431 1234555566666666666555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=4.6e-08  Score=105.37  Aligned_cols=122  Identities=25%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchh-hhCCCCCcEEEee
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRIS  219 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~  219 (700)
                      |.+.+.++|.+. ....++.-++.|+.|+|++|+++..  ..+..|++|++|||++|.+. .+|.. ...+ .|+.|.|+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            444444555544 3344444455555555555555422  14455555555555555554 22221 1111 25555555


Q ss_pred             cCcCCCCChhhhcCCCcccEEEccCCCCCCCc-hhhhhcCCCCCEEEcCCC
Q 005361          220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI-PASISALTSLTDLRISDL  269 (700)
Q Consensus       220 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n  269 (700)
                      +|.++..  ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|.|.+|
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            5554421  12344455555555555444311 111233444444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=4.3e-08  Score=105.55  Aligned_cols=179  Identities=20%  Similarity=0.247  Sum_probs=93.6

Q ss_pred             chhcCCCCCCCEEEccCCcCCCCCCccccCC-CCccEEEeeecCCC----------CcCchhhhCCCCCcEEEeecCcCC
Q 005361          156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKL-INLQKLILSSNSFT----------GELPAELTKLTNLNDLRISDNNFS  224 (700)
Q Consensus       156 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~  224 (700)
                      |-.+..+.+|+.|.|.++.+..  ...+..+ ..|++|.- .|.+.          |.+...+ ....|...+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            4445566778888888777663  1112111 23444422 22222          0111111 1234666677777776


Q ss_pred             CCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcC
Q 005361          225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD  304 (700)
Q Consensus       225 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~  304 (700)
                       .+...+.-++.|+.|+|++|++...  ..+..++.|+.|||+.|.+...+--....-.|..|.|++|.++...  .+.+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~  252 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR--GIEN  252 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh--hHHh
Confidence             5566677777777777777777632  2566677777777776655443221111134666666666655221  1335


Q ss_pred             CCCCCEEeccCCCCCCCC-hhhHhcCCCCCEEEccCCcCC
Q 005361          305 MTKLKNIDLSFNNLTGGI-PTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       305 l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      +.+|+.|||++|-|.+-- -.-+..+..|+.|+|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            556666666666555311 112344455566666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2e-07  Score=90.47  Aligned_cols=174  Identities=19%  Similarity=0.165  Sum_probs=121.6

Q ss_pred             CCccEEEeeecCCCC-cCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCC-CCCC-chhhhhcCCCCCE
Q 005361          187 INLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSS-LEGP-IPASISALTSLTD  263 (700)
Q Consensus       187 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~  263 (700)
                      ..|++|||+...++. .+...+..+.+|+.|.|.++++.+.+-..+..-.+|+.|+|+.+. ++.. ..-.+.+++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            358888888877763 233446677888889999998888888888888889999988653 4321 2234678888999


Q ss_pred             EEcCCCCCCCCccccc-Cc--cCccEEEcccCCCC---CCCchhhcCCCCCCEEeccCCC-CCCCChhhHhcCCCCCEEE
Q 005361          264 LRISDLKGSESAFPKL-DK--MNLKTLILTKCLIH---GEIPDYIGDMTKLKNIDLSFNN-LTGGIPTTFEKLAKTNFMY  336 (700)
Q Consensus       264 L~l~~n~~~~~~~~~l-~~--~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~  336 (700)
                      |+++.+.........+ ..  ++|+.|+|+++.-.   ..+......+++|.+||||.|. |+...-..|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9998877665554442 22  78888998886421   1222334578999999999874 4544445678889999999


Q ss_pred             ccCCcCCCCCchhhh-----cCCCeeeeecC
Q 005361          337 LTGNKLTGPVPKYIF-----NSNKNVDISLN  362 (700)
Q Consensus       337 L~~N~l~~~ip~~~~-----~~l~~L~ls~N  362 (700)
                      |+.+..  .+|+.+.     +.+.+||+-+.
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            998875  4565543     35667776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=2.5e-07  Score=89.85  Aligned_cols=176  Identities=18%  Similarity=0.228  Sum_probs=119.2

Q ss_pred             CCCEEEccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCC-ChhhhcCCCcccEE
Q 005361          164 TLKNLSIEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGK-IPEFIGKWKKIQKL  240 (700)
Q Consensus       164 ~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L  240 (700)
                      .|++|||++..++. .+-.-+..+.+|+.|.|.++++...+...+..-.+|+.|+|+.+. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            58888888877762 122335677888888888888887777778888888888887653 3321 22346778888888


Q ss_pred             EccCCCCCCCchhh-hhc-CCCCCEEEcCCCCC--CCCcccccCc--cCccEEEcccCC-CCCCCchhhcCCCCCCEEec
Q 005361          241 HIQGSSLEGPIPAS-ISA-LTSLTDLRISDLKG--SESAFPKLDK--MNLKTLILTKCL-IHGEIPDYIGDMTKLKNIDL  313 (700)
Q Consensus       241 ~L~~n~l~~~~~~~-~~~-l~~L~~L~l~~n~~--~~~~~~~l~~--~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L  313 (700)
                      +|+.+.+....... +.+ -++|+.|+++++..  ....+..+..  ++|..|||+.|. ++...-..|..++.|++|.|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88888776433221 222 25778888887532  2223333333  789999998874 45444446778899999999


Q ss_pred             cCCCCCCCChhh---HhcCCCCCEEEccCCc
Q 005361          314 SFNNLTGGIPTT---FEKLAKTNFMYLTGNK  341 (700)
Q Consensus       314 s~N~l~~~~p~~---~~~l~~L~~L~L~~N~  341 (700)
                      +.|..  ++|+.   +...|.|.+|+..+.-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            98864  46664   4566889999887753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.92  E-value=8.4e-06  Score=78.48  Aligned_cols=111  Identities=14%  Similarity=0.071  Sum_probs=58.2

Q ss_pred             CcccEEEccCCCCCCCchh----hhhcCCCCCEEEcCCCCCCCCcccc-----cCc-cCccEEEcccCCCCCC----Cch
Q 005361          235 KKIQKLHIQGSSLEGPIPA----SISALTSLTDLRISDLKGSESAFPK-----LDK-MNLKTLILTKCLIHGE----IPD  300 (700)
Q Consensus       235 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~-----l~~-~~L~~L~L~~n~l~~~----~p~  300 (700)
                      |.|+.....+|++..-...    .+..-.+|+.+.+..|.+....+..     +.. .+|+.|||..|.++-.    +..
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            4566666666655432111    1222245556665555544432222     111 5666666666666532    233


Q ss_pred             hhcCCCCCCEEeccCCCCCCCChhhH------hcCCCCCEEEccCCcCCCC
Q 005361          301 YIGDMTKLKNIDLSFNNLTGGIPTTF------EKLAKTNFMYLTGNKLTGP  345 (700)
Q Consensus       301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~L~~N~l~~~  345 (700)
                      .+..++.|+.|.+..|-++..-...+      ...|+|..|-+.+|.+.+.
T Consensus       237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            45556677777777777764333221      1346677777777766543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=6.7e-07  Score=77.12  Aligned_cols=104  Identities=23%  Similarity=0.236  Sum_probs=69.9

Q ss_pred             EEEEEecCCCCCCcCch---hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           94 VVTIALKAQNLTGTLPT---ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ...++|+++.+- .++.   .+....+|+..+|++|.+...++..-...+ ++.|+|++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            445566666553 2333   345556677778888877754444434444 777888888877 5666788888888888


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFT  200 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  200 (700)
                      ++.|.+. ..|..+..|.+|..|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            8888877 55666666777777777777766

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=8.8e-07  Score=76.42  Aligned_cols=104  Identities=21%  Similarity=0.297  Sum_probs=63.5

Q ss_pred             ccEEEccCCCCCCCCchh---cCCCCCCCEEEccCCcCCCCCCccccC-CCCccEEEeeecCCCCcCchhhhCCCCCcEE
Q 005361          141 LVELSVMGNRLSGPFPKV---LTNITTLKNLSIEGNLFTGSIPPDIRK-LINLQKLILSSNSFTGELPAELTKLTNLNDL  216 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  216 (700)
                      +..++|+.+++. .+++.   +.....|...+|++|.+. ..|..|.. ++.++.|+|.+|.++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            556677777664 33333   334445666677777776 44555443 346677777777776 566667777777777


Q ss_pred             EeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       217 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      +++.|.+. ..|..+..+.+|..|+..+|.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            77777666 44555555666666666666555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=4.1e-06  Score=81.60  Aligned_cols=107  Identities=25%  Similarity=0.354  Sum_probs=63.9

Q ss_pred             ccEEEccCCCCCCCCc-hhc-CCCCCCCEEEccCCcCCC--CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEE
Q 005361          141 LVELSVMGNRLSGPFP-KVL-TNITTLKNLSIEGNLFTG--SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDL  216 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  216 (700)
                      ++.|.+.++.|...-. ..| ...+.+++|||.+|.++.  .+-..+.++|.|+.|+|+.|.+...+...-..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            4455555555542211 112 246678888888888773  122235577888888888888774433222355677777


Q ss_pred             EeecCcCCC-CChhhhcCCCcccEEEccCCCC
Q 005361          217 RISDNNFSG-KIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       217 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      -|.+..+.- .....+..+|.+++|+++.|.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            777766642 2234456677777777777743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.4e-05  Score=54.77  Aligned_cols=36  Identities=28%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             CCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       307 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      +|++|+|++|+|+ .+|+.+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666666 34445566666666666666665

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.66  E-value=3.6e-05  Score=74.27  Aligned_cols=158  Identities=18%  Similarity=0.102  Sum_probs=96.2

Q ss_pred             hhCCCCCcEEEeecCcCCCCChh----hhcCCCcccEEEccCCCCCCCchh-------------hhhcCCCCCEEEcCCC
Q 005361          207 LTKLTNLNDLRISDNNFSGKIPE----FIGKWKKIQKLHIQGSSLEGPIPA-------------SISALTSLTDLRISDL  269 (700)
Q Consensus       207 ~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n  269 (700)
                      +..+|.|+..+|++|-+....|.    .+++-+.|.+|.|++|.+-...-.             ...+-+.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            33455555555555554433332    233445555555555554321111             1234477899999888


Q ss_pred             CCCCCcccc----cCc-cCccEEEcccCCCCCCC-----chhhcCCCCCCEEeccCCCCCCCC----hhhHhcCCCCCEE
Q 005361          270 KGSESAFPK----LDK-MNLKTLILTKCLIHGEI-----PDYIGDMTKLKNIDLSFNNLTGGI----PTTFEKLAKTNFM  335 (700)
Q Consensus       270 ~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L  335 (700)
                      .+..++...    +.. .+|+++.+..|.|.-.-     -.-+..+.+|+.|||..|-++-.-    ...+...+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            776655433    333 68999999999886321     112345789999999999988432    2355667789999


Q ss_pred             EccCCcCCCCCchhh--------hcCCCeeeeecCcc
Q 005361          336 YLTGNKLTGPVPKYI--------FNSNKNVDISLNNF  364 (700)
Q Consensus       336 ~L~~N~l~~~ip~~~--------~~~l~~L~ls~N~l  364 (700)
                      .+..|.++..-..++        .+++..|-..+|..
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            999998875433333        24566666666643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00018  Score=75.58  Aligned_cols=32  Identities=34%  Similarity=0.478  Sum_probs=18.1

Q ss_pred             cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCC
Q 005361          282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN  316 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  316 (700)
                      .+|+.|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            46666666666654 2332222  46777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00033  Score=73.55  Aligned_cols=74  Identities=12%  Similarity=0.195  Sum_probs=41.0

Q ss_pred             hcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC-cCCCCCCccccCCCCc
Q 005361          112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN-LFTGSIPPDIRKLINL  189 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L  189 (700)
                      +..+++++.|++++|.++.. |.   ... |+.|.++++.--..+|+.+.  ++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence            44567777777777766633 31   112 77777766433234554442  46777777776 333 3342      35


Q ss_pred             cEEEeeecC
Q 005361          190 QKLILSSNS  198 (700)
Q Consensus       190 ~~L~L~~n~  198 (700)
                      +.|++..+.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            556665544

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=97.58  E-value=4.2e-05  Score=73.74  Aligned_cols=121  Identities=26%  Similarity=0.451  Sum_probs=90.7

Q ss_pred             eeEEeeCCcce-ecCCceeecCc-cCCccccceecCCceEEeeeecccCCCCCCCcceEecccccccccccchhhhhhhc
Q 005361          415 TLHINCGGAKI-NTGHTKYEADM-EARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTAR  492 (700)
Q Consensus       415 ~~~~~c~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~tar  492 (700)
                      -+.+||||... ...+-.|..|+ ...|.+.           +.|......+              .....+..+|+|+|
T Consensus        61 I~aVncGgdaavd~ygI~f~aD~~~~VGras-----------d~G~~l~i~~--------------raeeed~ily~ter  115 (355)
T KOG3593|consen   61 IPAVNCGGDAAVDNYGIRFAADPLEGVGRAS-----------DYGMVLGIGC--------------RAEEEDIILYQTER  115 (355)
T ss_pred             hheeccCChhhhcccceEeeccccccccccC-----------Cccceeeccc--------------cCChhhhhhhhhcc
Confidence            45689999555 44566898887 4446442           2232222211              12256778999999


Q ss_pred             cCCccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEec-ceecccccccchhcCCcCccEEEeeE
Q 005361          493 VSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQ-EKLVKKDFNIEDEAGGTGIPIVKNFP  566 (700)
Q Consensus       493 ~~~~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~-~~~~~~~~di~~~~~~~~~p~~~df~  566 (700)
                      .....+.|..+..+.|.|.+-|.|||..|      +..+..+|||-+| +..+.+++||....|+++.+.--...
T Consensus       116 ~neetFgyd~pik~dgdyalvlkfaevyF------~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~  184 (355)
T KOG3593|consen  116 YNEETFGYDVPIKEDGDYALVLKFAEVYF------KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIP  184 (355)
T ss_pred             cchhhhcccccccCCCceehhhhHHHHHH------HhhhhhheeeeeccceeEEeccchhhhcCCCcccccceEE
Confidence            99988999999999999999999999754      4778899999999 99999999999999887776544333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.56  E-value=6.6e-05  Score=52.51  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=31.7

Q ss_pred             cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      ++|++|++++|+|+ .+|..+..|++|+.|+|++|+|+.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            47899999999999 566678999999999999999983

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00019  Score=66.65  Aligned_cols=82  Identities=24%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcC-chhhhCCCCCcEEEee
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL-PAELTKLTNLNDLRIS  219 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~  219 (700)
                      ...+||++|.+.  --+.|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.+|+|.... -..+..+|+|++|.+-
T Consensus        44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            444555555553  1223555666666666666666444433334455666666666554211 1123445555555555


Q ss_pred             cCcCC
Q 005361          220 DNNFS  224 (700)
Q Consensus       220 ~n~l~  224 (700)
                      +|+.+
T Consensus       122 ~Npv~  126 (233)
T KOG1644|consen  122 GNPVE  126 (233)
T ss_pred             CCchh
Confidence            55544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.30  E-value=0.00037  Score=64.72  Aligned_cols=124  Identities=21%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             ccEEEccCCCCCCCCchhcC-CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361          141 LVELSVMGNRLSGPFPKVLT-NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS  219 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  219 (700)
                      -+.++|.+.++..+ .. ++ -+.+...+||++|.+..  -..|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.
T Consensus        21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccch-hh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            44555555554411 11 22 24467788999998763  2457788899999999999987766655667889999999


Q ss_pred             cCcCCCCC-hhhhcCCCcccEEEccCCCCCCCch---hhhhcCCCCCEEEcCC
Q 005361          220 DNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPIP---ASISALTSLTDLRISD  268 (700)
Q Consensus       220 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~  268 (700)
                      +|++...- -+.+..+|+|++|.+-+|..+..--   -.+..+++|+.||++.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            98876221 1236678888999888887763211   1245567777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.12  E-value=0.00024  Score=80.90  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=69.0

Q ss_pred             ccEEEccCCCCC-CCCchhcC-CCCCCCEEEccCCcCCCC-CCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEE
Q 005361          141 LVELSVMGNRLS-GPFPKVLT-NITTLKNLSIEGNLFTGS-IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR  217 (700)
Q Consensus       141 L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  217 (700)
                      |+.|++++.... ..-|..++ .+|+|+.|.+.+-.+... ...-..++++|..||+|+.+++..  ..++.|++|+.|.
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~  201 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLS  201 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHh
Confidence            777777665432 11222222 367777777766554311 112234567777777777766633  4566677777776


Q ss_pred             eecCcCCC-CChhhhcCCCcccEEEccCCCCCCCc--h----hhhhcCCCCCEEEcCCCCC
Q 005361          218 ISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEGPI--P----ASISALTSLTDLRISDLKG  271 (700)
Q Consensus       218 L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~~  271 (700)
                      +.+=.+.. ..-..+.++++|+.||+|........  .    +.-..|++|+.||.++...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            65544432 12234556677777777665443211  1    1123466777777765443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.98  E-value=0.00049  Score=78.39  Aligned_cols=104  Identities=27%  Similarity=0.359  Sum_probs=54.9

Q ss_pred             CCCCEEEccCCcCCCCC-Ccccc-CCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361          163 TTLKNLSIEGNLFTGSI-PPDIR-KLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK  239 (700)
Q Consensus       163 ~~L~~L~L~~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  239 (700)
                      .+|++|++++......- |..++ -||+|+.|.+.+-.+... +-....++|+|..||+++.+++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            36777777765432111 11222 356777777666544321 122334566666666666666532  44566666666


Q ss_pred             EEccCCCCCC-CchhhhhcCCCCCEEEcCC
Q 005361          240 LHIQGSSLEG-PIPASISALTSLTDLRISD  268 (700)
Q Consensus       240 L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~  268 (700)
                      |.+.+=.+.. ..-..+.+|++|+.||+|.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            6666554442 1222344566666666654

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=96.97  E-value=0.0056  Score=64.51  Aligned_cols=98  Identities=30%  Similarity=0.428  Sum_probs=66.4

Q ss_pred             ccchhhhhhhccCC--ccceEEEeee--cCcceEEEEEeEEEEecCCCcccc-CCeEEEEEEecceecccccccchhcCC
Q 005361          482 AVDLELYRTARVSP--LSLTYYGLCL--GNGNYTVRLHFAEIIFKNDSTFNS-LGKRIFDIYIQEKLVKKDFNIEDEAGG  556 (700)
Q Consensus       482 ~~~~~ly~tar~~~--~~lt~~~~~~--~~~~y~vrlhF~ei~~~~~~~~~~-~~~rvF~iyI~~~~~~~~~di~~~~~~  556 (700)
                      .....+|+|||.-+  ..-+|.+++.  .++.|+||+||--.-.. ...+.. ...-.|+++++...- ..+++..   .
T Consensus        45 ~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliRl~F~~gnyd-~~~fs~~~~~~~FdL~~~~n~~-~tV~~~~---~  119 (347)
T PF12819_consen   45 SDSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIRLHFYYGNYD-GLNFSVSSSPPTFDLLLGFNFW-STVNLSN---S  119 (347)
T ss_pred             CccccccceEEEcCCCCccEEEeeccCCCCceEEEEEEecccccc-ccccccccCCcceEEEECCcee-EEEEecC---C
Confidence            45678999999987  6799999998  55699999999875222 111111 234569999985432 1122211   1


Q ss_pred             cCccEEEeeEEEec-CCccEEEEEEccCc
Q 005361          557 TGIPIVKNFPAEVT-SHTLKIHLYWAGRG  584 (700)
Q Consensus       557 ~~~p~~~df~v~~~-~~~~~i~~~~~~~~  584 (700)
                      ...++++.|.+.+. ++.+.|.+...+.+
T Consensus       120 ~~~~~~~E~ii~v~~~~~l~vclv~~~~g  148 (347)
T PF12819_consen  120 PSSPVVKEFIINVTWSDTLSVCLVPTGSG  148 (347)
T ss_pred             CcceEEEEEEEEEcCCCcEEEEEEeCCCC
Confidence            22689999999998 68888888776653

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.82  E-value=0.0019  Score=57.43  Aligned_cols=59  Identities=10%  Similarity=0.179  Sum_probs=18.4

Q ss_pred             hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361          111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      +|.+.++|+.+.+.. .+..+....|.... |+.+.+.++ +.......|.++++|+.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344444555555442 23323333333332 444444332 322223334444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.65  E-value=0.0031  Score=56.04  Aligned_cols=105  Identities=13%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             cccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCC
Q 005361          135 QWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL  213 (700)
Q Consensus       135 ~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  213 (700)
                      .|.... |+.+.+.. .+..+....|.++++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344442 55555553 344344444555555666665553 4333334455555566665543 3332333345555555


Q ss_pred             cEEEeecCcCCCCChhhhcCCCcccEEEccC
Q 005361          214 NDLRISDNNFSGKIPEFIGKWKKIQKLHIQG  244 (700)
Q Consensus       214 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  244 (700)
                      +.+++..+ +.......|.+. +|+.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            55555443 332223334444 555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.49  E-value=0.0017  Score=62.95  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             cCCCCCCCEEEccCC--cCCCCCCccccCCCCccEEEeeecCCC
Q 005361          159 LTNITTLKNLSIEGN--LFTGSIPPDIRKLINLQKLILSSNSFT  200 (700)
Q Consensus       159 ~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~  200 (700)
                      |..|++|++|.++.|  ++.+-++.-...+++|++|+++.|++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334555555555555  333333333333455555555555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.42  E-value=0.005  Score=42.82  Aligned_cols=35  Identities=40%  Similarity=0.879  Sum_probs=25.3

Q ss_pred             CHHHHHHHHHHHHhcCC------CCCCCC--CCCCCCCCCCcccCCCCCCCCCCeeeC
Q 005361           37 HAEEVKALKQIGRKLGK------KDWNFG--VDPCSQKGNWELSSDDKKGFESNVTCD   86 (700)
Q Consensus        37 ~~~e~~al~~l~~~~~~------~~w~~~--~d~C~~~~~w~~~~~~~~~~~~~v~C~   86 (700)
                      +++|++||++|++.+..      .+|...  .++|    .|           .||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C----~W-----------~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC----SW-----------SGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC----CS-----------TTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCe----ee-----------ccEEeC
Confidence            46899999999999863      579876  7899    68           899995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.21  E-value=0.0026  Score=61.75  Aligned_cols=61  Identities=25%  Similarity=0.425  Sum_probs=26.9

Q ss_pred             CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC--cCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN--NFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      +..|+.|.+.+..++..  ..|-.|++|+.|.++.|  +..+.++-....+++|++|++++|++.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444454444444311  12334455555555555  333333333333455555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.00077  Score=65.57  Aligned_cols=80  Identities=20%  Similarity=0.289  Sum_probs=47.2

Q ss_pred             CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcC-chhhhCCCCCcEEEeecCcCCCCChh-----hhcC
Q 005361          160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL-PAELTKLTNLNDLRISDNNFSGKIPE-----FIGK  233 (700)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~  233 (700)
                      ..|+.|+.|.|+-|+|+..  ..|..+++|++|+|..|.|...- -..+.++++|+.|.|..|.-.+.-+.     .+.-
T Consensus        38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            3455666666666666532  23455666666666666665221 13456777777777777776654432     3456


Q ss_pred             CCcccEEE
Q 005361          234 WKKIQKLH  241 (700)
Q Consensus       234 l~~L~~L~  241 (700)
                      +|+|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            67777765

>TIGR00864 PCC polycystin cation channel protein

Probab=95.45  E-value=0.0084  Score=75.65  Aligned_cols=66  Identities=23%  Similarity=0.352  Sum_probs=41.3

Q ss_pred             ccCCcCCCCCchhhhc---CCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361          337 LTGNKLTGPVPKYIFN---SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH  413 (700)
Q Consensus       337 L~~N~l~~~ip~~~~~---~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~  413 (700)
                      |++|+|+ .+|...+.   +|+.|+|++|        ||.|+|...||..|+...+.....     .....|..|...++
T Consensus         2 LSnN~Ls-tLp~g~F~~L~sL~~LdLsgN--------Pw~CDC~L~WL~~WL~~~~v~v~~-----~~~i~CasP~~LrG   67 (2740)
T TIGR00864         2 ISNNKIS-TIEEGICANLCNLSEIDLSGN--------PFECDCGLARLPRWAEEKGVKVRQ-----PEAALCAGPGALAG   67 (2740)
T ss_pred             CCCCcCC-ccChHHhccCCCceEEEeeCC--------ccccccccHHHHHHHHhcCccccC-----CcccCCCCChHHCC
Confidence            4555555 44444433   3456666666        666999999999999876433221     24567888876655


Q ss_pred             eee
Q 005361          414 YTL  416 (700)
Q Consensus       414 ~~~  416 (700)
                      ..+
T Consensus        68 ~~L   70 (2740)
T TIGR00864        68 QPL   70 (2740)
T ss_pred             CCc
Confidence            444

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=0.0018  Score=63.06  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=68.6

Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCC-hhhhcCCCcccEE
Q 005361          162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI-PEFIGKWKKIQKL  240 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L  240 (700)
                      +.+.+.|++-++.++.+  .....++.|+.|.|+-|.|+..  ..+..+++|++|+|..|.|.... -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667777777776632  2234678888888888888743  34677888888888888876321 1345778888888


Q ss_pred             EccCCCCCCCchh-----hhhcCCCCCEEE
Q 005361          241 HIQGSSLEGPIPA-----SISALTSLTDLR  265 (700)
Q Consensus       241 ~L~~n~l~~~~~~-----~~~~l~~L~~L~  265 (700)
                      +|..|.-.+..+.     .+..|++|+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877665443     356677887776

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=94.76  E-value=0.026  Score=62.87  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             CCccHHHHHHHHcCCCc---------CCccccCCCcceeEEEeC
Q 005361          664 GLYTLRQIKAATNNFDP---------ANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       664 ~~f~~~el~~AT~~Fs~---------~~~iG~GgfG~VYkg~L~  698 (700)
                      .-+||++=-.|-..|..         +.+||.|-||.||+|.|.
T Consensus       608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk  651 (996)
T KOG0196|consen  608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLK  651 (996)
T ss_pred             CCccccCccHHHHHhhhhcChhheEEEEEEecccccceeccccc
Confidence            34889888888777764         468999999999999984

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.86  E-value=0.00082  Score=73.31  Aligned_cols=61  Identities=21%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             ccEEEcccCCCCCC----CchhhcCC-CCCCEEeccCCCCCCCC----hhhHhcCCCCCEEEccCCcCCC
Q 005361          284 LKTLILTKCLIHGE----IPDYIGDM-TKLKNIDLSFNNLTGGI----PTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       284 L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                      +..|++.+|.+...    ....+..+ ..++.++++.|.|+..-    ...+..+++++.+.+++|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44466666665432    11223333 45566666666666432    2344455666666666666653

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=93.83  E-value=0.0086  Score=62.76  Aligned_cols=19  Identities=32%  Similarity=0.602  Sum_probs=16.8

Q ss_pred             CCccccCCCcceeEEEeCC
Q 005361          681 ANKVGEGGFGSVYKVNVML  699 (700)
Q Consensus       681 ~~~iG~GgfG~VYkg~L~d  699 (700)
                      -.+||+|+||.||||.|.+
T Consensus       215 ~eli~~Grfg~V~KaqL~~  233 (534)
T KOG3653|consen  215 LELIGRGRFGCVWKAQLDN  233 (534)
T ss_pred             HHHhhcCccceeehhhccC
Confidence            4589999999999999975

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=93.75  E-value=0.026  Score=62.34  Aligned_cols=24  Identities=25%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             HHcCCCcCCccccCCCcceeEEEe
Q 005361          674 ATNNFDPANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       674 AT~~Fs~~~~iG~GgfG~VYkg~L  697 (700)
                      .+++|...++||+||||+||||.+
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~  166 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLR  166 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEe
Confidence            367899999999999999999975

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.33  E-value=0.02  Score=33.26  Aligned_cols=6  Identities=50%  Similarity=0.883  Sum_probs=2.1

Q ss_pred             EEccCC
Q 005361          335 MYLTGN  340 (700)
Q Consensus       335 L~L~~N  340 (700)
                      |+|++|
T Consensus         5 Ldls~n   10 (22)
T PF00560_consen    5 LDLSGN   10 (22)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.88  E-value=0.0085  Score=61.87  Aligned_cols=250  Identities=17%  Similarity=0.123  Sum_probs=132.8

Q ss_pred             CcEEEEEecCCCCCCcC--chhhcCCCCCCEEECcCCC-CCCCcccccccc-c-ccEEEccCC-CCCCCCch-hcCCCCC
Q 005361           92 CHVVTIALKAQNLTGTL--PTELSKLRYLKQLDLSRNC-LTGSFSPQWASL-Q-LVELSVMGN-RLSGPFPK-VLTNITT  164 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~-L~~L~L~~n-~l~~~~p~-~~~~l~~  164 (700)
                      +.++.|.+.+..-.+.-  -....+.|+++.|.+.++. +++..-..+... + |+.|++..+ .++...-. -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            57888999887654432  2334678999999888875 232222222222 3 888888774 34433222 2346788


Q ss_pred             CCEEEccCCcC-CC-CCCccccCCCCccEEEeeecCCCCcCchhh----hCCCCCcEEEeecCc-CCCCC-hhhhcCCCc
Q 005361          165 LKNLSIEGNLF-TG-SIPPDIRKLINLQKLILSSNSFTGELPAEL----TKLTNLNDLRISDNN-FSGKI-PEFIGKWKK  236 (700)
Q Consensus       165 L~~L~L~~n~l-~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~  236 (700)
                      |++|+++.+.- ++ .+..-+.++..++.+.+.++.=.  ....+    .....+..+++..+. ++..- -..-..+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            88888887642 22 11123445666666666654211  11112    233445555554442 32111 111234567


Q ss_pred             ccEEEccCCCCCC-Cchhh-hhcCCCCCEEEcCCCCC-CCCcccccCc--cCccEEEcccCCCCC--CCchhhcCCCCCC
Q 005361          237 IQKLHIQGSSLEG-PIPAS-ISALTSLTDLRISDLKG-SESAFPKLDK--MNLKTLILTKCLIHG--EIPDYIGDMTKLK  309 (700)
Q Consensus       237 L~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~l~~n~~-~~~~~~~l~~--~~L~~L~L~~n~l~~--~~p~~~~~l~~L~  309 (700)
                      |+.|..+++...+ ..-.. -.+..+|+.|-+..+.. +...+..+..  ..|+.+++..+....  .+...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            7777777654322 12122 24567788887777543 3333344433  667777777765431  1222234567777


Q ss_pred             EEeccCCCCCCCC-----hhhHhcCCCCCEEEccCCcCC
Q 005361          310 NIDLSFNNLTGGI-----PTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       310 ~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      .|.|+++.+....     ...-..+..|+.+.|++...+
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            7777776554221     111234556677777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.06  E-value=0.065  Score=31.04  Aligned_cols=12  Identities=67%  Similarity=0.733  Sum_probs=5.7

Q ss_pred             CCEEeccCCCCC
Q 005361          308 LKNIDLSFNNLT  319 (700)
Q Consensus       308 L~~L~Ls~N~l~  319 (700)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.03  E-value=0.053  Score=60.14  Aligned_cols=139  Identities=18%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             CCCCccEEEeeecC-CCCcCchhhh-CCCCCcEEEeecCc-CCCC-ChhhhcCCCcccEEEccCCCCCC--CchhhhhcC
Q 005361          185 KLINLQKLILSSNS-FTGELPAELT-KLTNLNDLRISDNN-FSGK-IPEFIGKWKKIQKLHIQGSSLEG--PIPASISAL  258 (700)
Q Consensus       185 ~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l  258 (700)
                      .+++|+.|+++.+. ++...-..+. .+++|+.|.+..+. ++.. +-.....++.|+.|+|+.+....  .+.....++
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c  320 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC  320 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence            34556666666555 3322222222 25566666655544 3321 12223445566666666554321  122223345


Q ss_pred             CCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCC---CCCchhhcCCCCCCEEeccCCCCCCCC-hhhHhcCCCC
Q 005361          259 TSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIH---GEIPDYIGDMTKLKNIDLSFNNLTGGI-PTTFEKLAKT  332 (700)
Q Consensus       259 ~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L  332 (700)
                      ++|+.|.+.....         ...++.+.+......   ....-....+++|+.+.|..+.+.... -..+.+++.|
T Consensus       321 ~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  321 PNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             cchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            5555544333111         012333333332221   112224556777787777777744322 2344555555

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=91.57  E-value=0.043  Score=61.51  Aligned_cols=17  Identities=41%  Similarity=0.692  Sum_probs=15.6

Q ss_pred             CCccccCCCcceeEEEe
Q 005361          681 ANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       681 ~~~iG~GgfG~VYkg~L  697 (700)
                      ..+||.|.||+||||+.
T Consensus       701 ~kvLGsgAfGtV~kGiw  717 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIW  717 (1177)
T ss_pred             hceeccccceeEEeeeE
Confidence            67999999999999985

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=91.24  E-value=0.077  Score=59.99  Aligned_cols=25  Identities=40%  Similarity=0.812  Sum_probs=23.0

Q ss_pred             HHcCCCcCCccccCCCcceeEEEeC
Q 005361          674 ATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       674 AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      ++++|...++||+||||.||||++.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~  154 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLV  154 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEc
Confidence            6789999999999999999999874

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.72  E-value=0.0067  Score=66.30  Aligned_cols=180  Identities=21%  Similarity=0.265  Sum_probs=114.0

Q ss_pred             EEEEEecCCCCCCc----CchhhcCCCCCCEEECcCCCCCCCc----ccccccc-c-ccEEEccCCCCCC----CCchhc
Q 005361           94 VVTIALKAQNLTGT----LPTELSKLRYLKQLDLSRNCLTGSF----SPQWASL-Q-LVELSVMGNRLSG----PFPKVL  159 (700)
Q Consensus        94 v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l-~-L~~L~L~~n~l~~----~~p~~~  159 (700)
                      +..+.|.+|.+...    +-..+...+.|+.|++++|.+.+.-    -..+... . +++|++..|.++.    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66778888887654    3345677889999999999887421    1222332 3 7888888888764    355566


Q ss_pred             CCCCCCCEEEccCCcCCC----CCCccc----cCCCCccEEEeeecCCCCcC----chhhhCCCC-CcEEEeecCcCCCC
Q 005361          160 TNITTLKNLSIEGNLFTG----SIPPDI----RKLINLQKLILSSNSFTGEL----PAELTKLTN-LNDLRISDNNFSGK  226 (700)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~----~~p~~~----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~~  226 (700)
                      .....|+.++++.|.+..    .++..+    ....++++|.++++.++...    ...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            668889999999988741    122223    34677888888888776321    223444455 66678888777633


Q ss_pred             ----ChhhhcCC-CcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCC
Q 005361          227 ----IPEFIGKW-KKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSE  273 (700)
Q Consensus       227 ----~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~  273 (700)
                          ....+..+ ..++.++++.|.+...    ....+..++.++.|.+..|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                12233444 5677888888877653    33444556667777776655443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.42  E-value=0.0087  Score=56.93  Aligned_cols=84  Identities=23%  Similarity=0.264  Sum_probs=39.5

Q ss_pred             hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCc
Q 005361          111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINL  189 (700)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  189 (700)
                      ++..+...+.||++.|++.. ...-|.-+. |..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            44555666666666665542 222233333 555555555544 34444444444444444444443 334444444444


Q ss_pred             cEEEeeec
Q 005361          190 QKLILSSN  197 (700)
Q Consensus       190 ~~L~L~~n  197 (700)
                      +++++-.|
T Consensus       114 k~~e~k~~  121 (326)
T KOG0473|consen  114 KKNEQKKT  121 (326)
T ss_pred             chhhhccC
Confidence            44444333

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.19  E-value=0.18  Score=27.09  Aligned_cols=13  Identities=54%  Similarity=0.749  Sum_probs=4.6

Q ss_pred             CCCEEeccCCCCC
Q 005361          307 KLKNIDLSFNNLT  319 (700)
Q Consensus       307 ~L~~L~Ls~N~l~  319 (700)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.34  E-value=0.35  Score=29.18  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=9.8

Q ss_pred             CCCCEEEccCCcCCCCCchhh
Q 005361          330 AKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       330 ~~L~~L~L~~N~l~~~ip~~~  350 (700)
                      ++|+.|+|++|+|+ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34555555555555 444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.34  E-value=0.35  Score=29.18  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=9.8

Q ss_pred             CCCCEEEccCCcCCCCCchhh
Q 005361          330 AKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       330 ~~L~~L~L~~N~l~~~ip~~~  350 (700)
                      ++|+.|+|++|+|+ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34555555555555 444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.03  E-value=0.0096  Score=56.65  Aligned_cols=88  Identities=18%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             hcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcc
Q 005361          158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI  237 (700)
Q Consensus       158 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  237 (700)
                      .+......+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..++.+..++.+++..|.++ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3445556667777777665 34455666667777777777766 56666777667777777666665 566677777777


Q ss_pred             cEEEccCCCCC
Q 005361          238 QKLHIQGSSLE  248 (700)
Q Consensus       238 ~~L~L~~n~l~  248 (700)
                      +++++..|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            77777766643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.27  E-value=0.48  Score=28.57  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=15.5

Q ss_pred             CCCCCEEeccCCCCCCCChhhH
Q 005361          305 MTKLKNIDLSFNNLTGGIPTTF  326 (700)
Q Consensus       305 l~~L~~L~Ls~N~l~~~~p~~~  326 (700)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888888888885544444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.27  E-value=0.48  Score=28.57  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=15.5

Q ss_pred             CCCCCEEeccCCCCCCCChhhH
Q 005361          305 MTKLKNIDLSFNNLTGGIPTTF  326 (700)
Q Consensus       305 l~~L~~L~Ls~N~l~~~~p~~~  326 (700)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888888888885544444

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=84.70  E-value=0.39  Score=52.43  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361          666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      ..++|++-       ..+||+|.||+||||...
T Consensus       389 Ip~~ev~l-------~~rIGsGsFGtV~Rg~wh  414 (678)
T KOG0193|consen  389 IPPEEVLL-------GERIGSGSFGTVYRGRWH  414 (678)
T ss_pred             cCHHHhhc-------cceeccccccceeecccc
Confidence            56666664       468999999999999863

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.23  E-value=0.45  Score=44.82  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=28.2

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCC
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCL  128 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l  128 (700)
                      ..|+.++-++..|...--..+.+++.|+.|.+.++.-
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~  137 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY  137 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence            3588899888888766556678888888888877753

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=81.60  E-value=5.3  Score=41.61  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             HHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361          668 LRQIKAATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       668 ~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      .+||..--..|--+.++-+|-||.||+|++.
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~  306 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWR  306 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeec
Confidence            3455555566777889999999999999874

>PTZ00284 protein kinase; Provisional

Probab=81.30  E-value=0.39  Score=53.20  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=24.4

Q ss_pred             HHHHHHHHcCCCcCCccccCCCcceeEEEe
Q 005361          668 LRQIKAATNNFDPANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       668 ~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L  697 (700)
                      .+++..++++|....+||+|+||+||+++.
T Consensus       121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~  150 (467)
T PTZ00284        121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWD  150 (467)
T ss_pred             CCccccCCCcEEEEEEEEeccCEEEEEEEE
Confidence            344555678888889999999999999975

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=81.18  E-value=0.52  Score=52.18  Aligned_cols=12  Identities=33%  Similarity=0.379  Sum_probs=5.1

Q ss_pred             CCCCCEEeccCC
Q 005361          305 MTKLKNIDLSFN  316 (700)
Q Consensus       305 l~~L~~L~Ls~N  316 (700)
                      +++|++|+|+++
T Consensus       294 ~~~L~~L~l~~c  305 (482)
T KOG1947|consen  294 CPSLRELDLSGC  305 (482)
T ss_pred             cCcccEEeeecC
Confidence            334444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	700
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-21
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 41/321 (12%)
Query: 86  DCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-QWASLQLVEL 144
           DCS+    +  + +    L+G     +S    LK L++S N   G   P    SLQ   L
Sbjct: 218 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY--L 271
Query: 145 SVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL 203
           S+  N+ +G  P  L+    TL  L + GN F G++PP       L+ L LSSN+F+GEL
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 204 PAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKK-------------------------- 236
           P + L K+  L  L +S N FSG++PE +                               
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 237 -IQKLHIQGSSLEGPIPASISALTSLTDLRIS--DLKGS-ESAFPKLDKMNLKTLILTKC 292
            +Q+L++Q +   G IP ++S  + L  L +S   L G+  S+   L K  L+ L L   
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLN 449
Query: 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
           ++ GEIP  +  +  L+ + L FN+LTG IP+        N++ L+ N+LTG +PK+I  
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 353 SNKNVDISLNNFTWESSDPIE 373
                 + L+N ++  + P E
Sbjct: 510 LENLAILKLSNNSFSGNIPAE 530

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 41/321 (12%)
Query: 86  DCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-QWASLQLVEL 144
           DCS+    +  + +    L+G     +S    LK L++S N   G   P    SLQ   L
Sbjct: 221 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY--L 274
Query: 145 SVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL 203
           S+  N+ +G  P  L+    TL  L + GN F G++PP       L+ L LSSN+F+GEL
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 204 PAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKK-------------------------- 236
           P + L K+  L  L +S N FSG++PE +                               
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 237 -IQKLHIQGSSLEGPIPASISALTSLTDLRIS--DLKGS-ESAFPKLDKMNLKTLILTKC 292
            +Q+L++Q +   G IP ++S  + L  L +S   L G+  S+   L K  L+ L L   
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLN 452
Query: 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
           ++ GEIP  +  +  L+ + L FN+LTG IP+        N++ L+ N+LTG +PK+I  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 353 SNKNVDISLNNFTWESSDPIE 373
                 + L+N ++  + P E
Sbjct: 513 LENLAILKLSNNSFSGNIPAE 533

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 126/313 (40%), Gaps = 57/313 (18%)
Query: 37  HAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVT 96
           + ++ +AL QI + LG           +   +W  ++D        V CD  + T  V  
Sbjct: 4   NPQDKQALLQIKKDLGNP---------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNN 54
Query: 97  IALKAQNLTGT--LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGP 154
           + L   NL     +P+ L+ L YL  L +      G                  N L GP
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYI------GGI----------------NNLVGP 92
Query: 155 FPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLN 214
            P  +  +T L  L I     +G+IP  + ++  L  L  S N+ +G LP  ++ L NL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 215 DLRISDNNFSGKIPEFIGKWKKI-QKLHIQGSSLEGPIPASISALT-SLTDLRISDLKGS 272
            +    N  SG IP+  G + K+   + I  + L G IP + + L  +  DL  + L+G 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
Query: 273 ESAFPKLDK----------------------MNLKTLILTKCLIHGEIPDYIGDMTKLKN 310
            S     DK                       NL  L L    I+G +P  +  +  L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 311 IDLSFNNLTGGIP 323
           +++SFNNL G IP
Sbjct: 273 LNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 208 TKLTNLNDLRISDNNFSGK--IPEFIGKWKKIQKLHIQG-SSLEGPIPASISALTSLTDL 264
           T+   +N+L +S  N      IP  +     +  L+I G ++L GPIP +I+ LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 265 RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT 324
            I                       T   + G IPD++  +  L  +D S+N L+G +P 
Sbjct: 107 YI-----------------------THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 325 TFEKLAKTNFMYLTGNKLTGPVP 347
           +   L     +   GN+++G +P
Sbjct: 144 SISSLPNLVGITFDGNRISGAIP 166

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 184 RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE--FIGKWKKIQKLH 241
           + L +L+ L LS N            L NLN L + DN  +  IP   F+    K+++L 
Sbjct: 85  KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV-YLSKLKELW 142
Query: 242 IQGSSLEGPIPASISALTSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGE 297
           ++ + +E     + + + SL  L + +LK     SE AF  L   NL+ L L  C +  E
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS--NLRYLNLAMCNLR-E 199
Query: 298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
           IP+ +  + KL  +DLS N+L+   P +F+ L     +++  +++
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	700
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-11
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-11
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  202 bits (517), Expect = 1e-59
 Identities = 76/321 (23%), Positives = 121/321 (37%), Gaps = 47/321 (14%)

Query: 37  HAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATC 92
           + ++ +AL QI + LG       W    D C+    W             V CD  + T 
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN--RTW-----------LGVLCDTDTQTY 50

Query: 93  HVVTIALKAQNLTGT--LPTELSKLRYLKQLDLS-RNCLTGSFSPQWASLQ-LVELSVMG 148
            V  + L   NL     +P+ L+ L YL  L +   N L G   P  A L  L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 149 NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT 208
             +SG  P  L+ I TL  L    N  +G++PP I  L NL  +    N  +G +P    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 209 KLTNL-NDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS 267
             + L   + IS N  +GKIP        +  + +  + LEG       +  +       
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ----- 224

Query: 268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327
                              + L K  +  ++   +G    L  +DL  N + G +P    
Sbjct: 225 ------------------KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 328 KLAKTNFMYLTGNKLTGPVPK 348
           +L   + + ++ N L G +P+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (466), Expect = 2e-52
 Identities = 65/270 (24%), Positives = 106/270 (39%), Gaps = 32/270 (11%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
              G L    ++   +  LDLS   L                         P P  L N+
Sbjct: 37  TWLGVLCDTDTQTYRVNNLDLSGLNLPKP---------------------YPIPSSLANL 75

Query: 163 TTLKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
             L  L I G N   G IPP I KL  L  L ++  + +G +P  L+++  L  L  S N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL-TDLRISD--LKGSESAFPK 278
             SG +P  I     +  +   G+ + G IP S  + + L T + IS   L G     P 
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK---IPP 192

Query: 279 -LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYL 337
               +NL  + L++ ++ G+     G     + I L+ N+L   +          N + L
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251

Query: 338 TGNKLTGPVPKYIFNSN--KNVDISLNNFT 365
             N++ G +P+ +       ++++S NN  
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (389), Expect = 8e-42
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 28/223 (12%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN 161
           N++G +P  LS+++ L  LD S N L+G+  P  +SL  LV ++  GNR+SG  P    +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 162 ITTL-KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220
            + L  +++I  N  TG IPP    L NL  + LS N   G+         N   + ++ 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLD 280
           N+ +  + + +G  K +  L ++ + + G +P  ++ L  L  L +S             
Sbjct: 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF------------ 277

Query: 281 KMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323
             N          + GEIP   G++ +      + N    G P
Sbjct: 278 --NN---------LCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  203 bits (520), Expect = 3e-56
 Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 19/276 (6%)

Query: 103 NLTGTLPTEL---SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVL 159
           +++G              LK L +S N ++G        + L  L V  N  S   P  L
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIP-FL 219

Query: 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
            + + L++L I GN  +G     I     L+ L +SSN F G +P     L +L  L ++
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277

Query: 220 DNNFSGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGS--ES 274
           +N F+G+IP+F+ G    +  L + G+   G +P    + + L  L +S     G     
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 275 AFPKLDKMNLKTLILTKCLIHGEIPDYIGDMT-KLKNIDLSFNNLTGGIPTTFEKLAKTN 333
              K+    LK L L+     GE+P+ + +++  L  +DLS NN +G I     +  K  
Sbjct: 338 TLLKMR--GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 334 --FMYLTGNKLTGPVPKYIFN-SN-KNVDISLNNFT 365
              +YL  N  TG +P  + N S   ++ +S N  +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (510), Expect = 7e-55
 Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 24/279 (8%)

Query: 103 NLTGTLPTE-LSKLRYLKQLDLSRNCLTGSFSPQWASL----QLVELSVMGNRLSGPFPK 157
            L          KL  L+ LDLS N ++G+    W       +L  L++ GN++SG    
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
            ++    L+ L +  N F+  IP  +     LQ L +S N  +G+    ++  T L  L 
Sbjct: 196 -VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISA-LTSLTDLRISD--LKGSES 274
           IS N F G IP      K +Q L +  +   G IP  +S    +LT L +S     G+  
Sbjct: 254 ISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-- 309

Query: 275 AFPK-LDKM-NLKTLILTKCLIHGEIP-DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
             P        L++L L+     GE+P D +  M  LK +DLSFN  +G +P +   L+ 
Sbjct: 310 -VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 332 T-NFMYLTGNKLTGPVPKYIFNSNKN----VDISLNNFT 365
           +   + L+ N  +GP+   +  + KN    + +  N FT
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  197 bits (502), Expect = 7e-54
 Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 14/272 (5%)

Query: 103 NLTGTLPTELSK--LRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVL 159
           N +G +   L +     L++L L  N  TG   P  ++  +LV L +  N LSG  P  L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
            +++ L++L +  N+  G IP ++  +  L+ LIL  N  TGE+P+ L+  TNLN + +S
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFP 277
           +N  +G+IP++IG+ + +  L +  +S  G IPA +    SL  L ++     G+    P
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT---IP 555

Query: 278 KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN--NLTGGIPTTFEKLAKTNFM 335
               M  ++  +    I G+   YI +    K    + N     G       +L+  N  
Sbjct: 556 A--AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 336 YLTGNKLTGPVPKYIFNSNK--NVDISLNNFT 365
            +T     G       N+     +D+S N  +
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  193 bits (494), Expect = 1e-52
 Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 12/270 (4%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTN 161
            L G +P EL  ++ L+ L L  N LTG      ++   L  +S+  NRL+G  PK +  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
           +  L  L +  N F+G+IP ++    +L  L L++N F G +PA + K +      I+ N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAAN 568

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGS--SLEGPIPASISALTSLTDLRISD--LKGSESAFP 277
             +GK   +I      ++ H  G+    +G     ++ L++     I+     G  S   
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 278 KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYL 337
             +  ++  L ++  ++ G IP  IG M  L  ++L  N+++G IP     L   N + L
Sbjct: 629 DNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 338 TGNKLTGPVPKYI--FNSNKNVDISLNNFT 365
           + NKL G +P+ +        +D+S NN +
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  191 bits (487), Expect = 8e-52
 Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 59/323 (18%)

Query: 55  DWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLT---GTLPTE 111
           DW+   +PC+    ++       G    VTC        V +I L ++ L      + + 
Sbjct: 32  DWSSNKNPCT----FD-------G----VTCR----DDKVTSIDLSSKPLNVGFSAVSSS 72

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV--LTNITTLKNLS 169
           L  L  L+ L LS + + GS S    S  L  L +  N LSGP   +  L + + LK L+
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 170 IEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELT---KLTNLNDLRISDNNFSG 225
           +  N            KL +L+ L LS+NS +G              L  L IS N  SG
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLK 285
            +   + +   ++ L +  ++    IP  +   ++L  L IS                  
Sbjct: 193 DVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG----------------- 232

Query: 286 TLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP 345
                   + G+    I   T+LK +++S N   G IP     L    ++ L  NK TG 
Sbjct: 233 ------NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE 284

Query: 346 VPKYIFNSNKN---VDISLNNFT 365
           +P ++  +      +D+S N+F 
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  170 bits (433), Expect = 9e-45
 Identities = 60/248 (24%), Positives = 93/248 (37%), Gaps = 30/248 (12%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTN 161
            LTG +P  + +L  L  L LS N  +G+   +      L+ L +  N  +G  P  +  
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN--SFTGELPAELTKLTNLNDLRIS 219
            +      I  N   G     I+     ++   + N   F G    +L +L+  N   I+
Sbjct: 561 QSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKL 279
              + G           +  L +  + L G IP  I ++  L  L +             
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG------------ 664

Query: 280 DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
              N          I G IPD +GD+  L  +DLS N L G IP     L     + L+ 
Sbjct: 665 --HND---------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 340 NKLTGPVP 347
           N L+GP+P
Sbjct: 714 NNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (410), Expect = 9e-42
 Identities = 57/225 (25%), Positives = 85/225 (37%), Gaps = 28/225 (12%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
           + +G +P EL   R L  LDL+ N   G+              +  N ++G     + N 
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG---KIAANFIAGKRYVYIKND 581

Query: 163 TTLKNLSIEGNL--FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220
              K     GNL  F G     + +L       ++S  + G          ++  L +S 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLD 280
           N  SG IP+ IG    +  L++  + + G IP  +  L  L  L +S             
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS------------ 689

Query: 281 KMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT 325
             N     L      G IP  +  +T L  IDLS NNL+G IP  
Sbjct: 690 --NK----LD-----GRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (432), Expect = 3e-45
 Identities = 51/323 (15%), Positives = 109/323 (33%), Gaps = 27/323 (8%)

Query: 43  ALKQIGRKLGKKDWNFGVDPCSQKGNWELSSD-DKKGFESNVTCDCSSATCHVVTIALKA 101
           ALK+I   L  K+W+          NW  + + D  G +  V+ + +     V  ++L+ 
Sbjct: 34  ALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG---RVTGLSLEG 90

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS-----LQLVELSVMGNRLSGPFP 156
              +G +P  + +L  L+ L L  +    +            +   +   M       F 
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 157 KVLT--NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLN 214
                 + + L    I  +    SI    R  +   ++   SN+ T  +   + +LT L 
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209

Query: 215 DLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES 274
              + ++ F  +      + +  +                   L  LTD+ + +      
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 275 AFPKLDKM-NLKTLILTKCLIHG--------EIPDYIGDMTKLKNIDLSFNNLTGG-IPT 324
               L  +  ++ + +               +         K++ I + +NNL    + T
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 325 TFEKLAKTNFMYLTGNKLTGPVP 347
           + +K+ K   +    N+L G +P
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  150 bits (382), Expect = 1e-38
 Identities = 40/285 (14%), Positives = 83/285 (29%), Gaps = 31/285 (10%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL--QLVELSVMGNRLSG-PFPKVL 159
            L G LP        L  L+L+ N +T      +     Q+  LS   N+L   P     
Sbjct: 341 QLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 160 TNITTLKNLSIEGNLFTG-------SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
            +++ +  +    N            + P   K IN+  + LS+N  +       +  + 
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 213 LNDLRISDNNFSG-------KIPEFIGKWKKIQKLHIQGSSLEGPIPASISA--LTSLTD 263
           L+ + +  N  +           E       +  + ++ + L   +     A  L  L  
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVG 517

Query: 264 LRISD--LKG-SESAF--PKLDKMNLKT-LILTKCLIHGEIPDYIGDMTKLKNIDLSFNN 317
           + +S                L    ++            E P+ I     L  + +  N+
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLN 362
           +          +   + + +  N        Y+    +     L 
Sbjct: 578 IRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  138 bits (349), Expect = 2e-34
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 32/290 (11%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPK 157
           + +     ++           Q+    N +T   S     L  L +  +  +        
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENIC 224

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
                   +           +       L +L  + + +     +LP  L  L  +  + 
Sbjct: 225 EAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 218 ISDNNF--------SGKIPEFIGKWKKIQKLHIQGSSL-EGPIPASISALTSLTDLRISD 268
           ++ N            +        +KIQ ++I  ++L   P+  S+  +  L  L    
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 269 --LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF 326
             L+G   AF     + L +L L    I     ++ G   +++N+  + N L   IP  F
Sbjct: 340 NQLEGKLPAFGSE--IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396

Query: 327 E--KLAKTNFMYLTGNKLTG-------PVPKYIFNSNK--NVDISLNNFT 365
           +   ++  + +  + N++         P+    F      ++++S N  +
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (278), Expect = 2e-25
 Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 17/217 (7%)

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTG----ELPAELTKLTNLN 214
           L +   +  LS+EG   +G +P  I +L  L+ L L S+          P  ++   +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 215 DLRISDNNFSGKIPEFIGKWK--KIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LK 270
             +    ++     ++  +     + K  I     +  I  S       T +      + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 271 GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA 330
               A  +L    L+   +       E           +N +  +          ++ L 
Sbjct: 197 FVSKAVMRL--TKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 331 KTNFMYLTGNKLTGPVPKYIFN-SN-KNVDISLNNFT 365
               + +        +P ++      + ++++ N   
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 32/210 (15%)

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
           N + E +++       +     +  L L     +G +P  + +LT L  L +  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES---AFPKLDKMN 283
              F                     P  ISA  S    +   +   ++     P+ D  +
Sbjct: 121 ERLF--------------------GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           L    +        I        K   I    NN+T  +     +L K    Y+  +   
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFV 219

Query: 344 GPVPK--------YIFNSNKNVDISLNNFT 365
                              K  D+  +N  
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLK 249

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score =  141 bits (357), Expect = 3e-39
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 40/207 (19%)

Query: 409 ADQYHYTLHINCGGAKIN-TGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLD 467
           AD+  +   +N GG          Y  D       +    G+   +      +  + +  
Sbjct: 3   ADKVIW--AVNAGGESHVDVHGIHYRKD------PLEGRVGRASDYGMKLPILRSNPE-- 52

Query: 468 NYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTF 527
                           D  LY+T R +  S  Y       G Y + L FAE        F
Sbjct: 53  ----------------DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAE------VYF 90

Query: 528 NSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHL---YWAGRG 584
               +++FD+ +    V KD +I D  G       +  P  +    L +      + G+ 
Sbjct: 91  AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFTGKL 149

Query: 585 TTGIPLRGTYGPLISAISVKSNFKPPV 611
           +          P + A+ +    K   
Sbjct: 150 SVEFVKGYYDNPKVCALFI---MKGTA 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 3e-39
 Identities = 53/270 (19%), Positives = 96/270 (35%), Gaps = 9/270 (3%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTN 161
            L        ++   L  LD+  N ++         L  L  L++  N LS    K    
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
            T L  L +  N           K  NL  L LS N  +        +L NL +L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 222 NFSGKIPEFIG--KWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA---- 275
                  E +       ++KL +  + ++   P    A+  L  L +++++   S     
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYIGDM--TKLKNIDLSFNNLTGGIPTTFEKLAKTN 333
             +L   +++ L L+   +          +  T L  +DLS+NNL      +F  L +  
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 334 FMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363
           + +L  N +       +        ++L  
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (373), Expect = 3e-37
 Identities = 53/293 (18%), Positives = 90/293 (30%), Gaps = 25/293 (8%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGS----FSPQWASLQLVELSVMGNRLSGPFPKV 158
            +    P     +  L  L L+   L  S       + A+  +  LS+  ++LS      
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 159 LTN--ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDL 216
                 T L  L +  N            L  L+   L  N+        L  L N+  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 217 R---------ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL--- 264
                     IS  +            K ++ L+++ + + G      + L +L  L   
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 265 --RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI 322
               S    +   F  L    L  L LTK  I     D    +  L+ +DL  N +   +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 323 P-TTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN---VDISLNNFTWESSDP 371
               +  L     +YL+ NK    + +  F    +   + +         S P
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSP 473

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  144 bits (365), Expect = 3e-36
 Identities = 50/283 (17%), Positives = 94/283 (33%), Gaps = 20/283 (7%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-----QWASLQLVELSVMGNRLSGPFPK 157
           ++ G      + L  LK L LS +  +            A   L  L++  N++S     
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPD-IRKLINLQKLILSSNSFTGELPAELTKLTNLNDL 216
             + +  L+ L +  N     +     R L N+ ++ LS N +          + +L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 217 RISDNNFSG--KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDL 269
            +           P      + +  L +  +++       +  L  L  L      ++ L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 270 KGSESAFPKLDKM----NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT 325
               +    +  +    +L  L L          +   D+ +LK IDL  NNL     + 
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 326 FEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN---VDISLNNFT 365
           F        + L  N +T    K    + +N   +D+  N F 
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (341), Expect = 3e-33
 Identities = 55/289 (19%), Positives = 108/289 (37%), Gaps = 25/289 (8%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPK 157
           +   +L          L+ L+ L++  N + G  S  +  L  L  LS+  +  S     
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 158 VLT----NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPA-ELTKLTN 212
             T      + L  L++  N  +         L +L+ L L  N    EL   E   L N
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG--PIPASISALTSLTDLRISD-- 268
           + ++ +S N +             +Q+L ++  +L+     P+    L +LT L +S+  
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 269 LKG-SESAFPKLDKMNLKTLILTKCLIH--------GEIPDYIGDMTKLKNIDLSFNNLT 319
           +   ++     L+   L+ L L    +         G    ++  ++ L  ++L  N   
Sbjct: 492 IANINDDMLEGLE--KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 320 GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN---VDISLNNFT 365
                 F+ L +   + L  N L   +P  +FN+  +   +++  N  T
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (337), Expect = 9e-33
 Identities = 50/262 (19%), Positives = 85/262 (32%), Gaps = 18/262 (6%)

Query: 117 YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFT 176
             +  D S   LT    P      +  L++  N+L        T  + L +L +  N  +
Sbjct: 5   SHEVADCSHLKLTQV--PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 177 GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
              P   +KL  L+ L L  N  +          TNL +L +  N+          K K 
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTK 291
           +  L +  + L      +   L +L +L     +I  L             +LK L L+ 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL--KSEELDIFANSSLKKLELSS 180

Query: 292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF---EKLAKTNFMYLTGNKLTGPVPK 348
             I    P     + +L  + L+   L   +               + L+ ++L+     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSN 239

Query: 349 YIFNSNKNV-----DISLNNFT 365
             F   K       D+S NN  
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 10/158 (6%)

Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLS--------GPFP 156
            + P+    LR L  LDLS N +          L +L  L +  N L+        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 157 KVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDL 216
             L  ++ L  L++E N F        + L  L+ + L  N+      +      +L  L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 217 RISDNNFSGKIPE-FIGKWKKIQKLHIQGSSLEGPIPA 253
            +  N  +    + F   ++ + +L ++ +  +    +
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  142 bits (361), Expect = 5e-36
 Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 15/265 (5%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV-LTNITTLKNL 168
            + S     + L+L          P      L  L+   N+    F +V L ++  L +L
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-DL 354

Query: 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP 228
           S  G  F G          +L+ L LS N     + +    L  L  L    +N      
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 229 -EFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGS--ESAFPKLDKMN 283
                  + +  L I  +          + L+SL  L+++    + +     F +L   N
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR--N 471

Query: 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           L  L L++C +    P     ++ L+ +++S NN        ++ L     +  + N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 344 GPVPKYIFNSNKN---VDISLNNFT 365
               + + +   +   ++++ N+F 
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (321), Expect = 7e-31
 Identities = 46/270 (17%), Positives = 95/270 (35%), Gaps = 15/270 (5%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLT--GSFSPQWASL-QLVELSVMGNRLSGPFPKVL 159
           +  G        L  L+ LDLSRN L+  G  S        L  L +  N +        
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 160 TNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
             +  L++L  + +         +   L NL  L +S              L++L  L++
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 219 SDNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKG-SES 274
           + N+F     P+   + + +  L +    LE   P + ++L+SL  L +S          
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 275 AFPKLDKMNLKTLILTKCLIHGEIPDYIGDM-TKLKNIDLSFNNLTGGIPTT--FEKLAK 331
            +  L+  +L+ L  +   I       +    + L  ++L+ N+           + +  
Sbjct: 513 PYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

Query: 332 TNFMYLTGNKLTGPVPKYIFNSN-KNVDIS 360
              + +   ++    P         +++I+
Sbjct: 571 QRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (310), Expect = 2e-29
 Identities = 52/308 (16%), Positives = 89/308 (28%), Gaps = 43/308 (13%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQW----ASLQLVELSVMGNRLSGPFPKV 158
            +    P    ++R L +L L  N  + +         A L++  L +   R  G   K 
Sbjct: 188 PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 159 -LTNITTLKNLSIEGN------LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLT 211
             + +  L NL+IE         +   I      L N+    L S +         +   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF 304

Query: 212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS---------------------SLEGP 250
               L + +  F       +   K++     +G                      S +G 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 251 IPASISALTSLTDLRISD--LKGSESAFPKLDKMNLKTLILTKCLIHGEIP-DYIGDMTK 307
              S    TSL  L +S   +    S F  L    L+ L      +           +  
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 308 LKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV---DISLNNF 364
           L  +D+S  +        F  L+    + + GN         IF   +N+   D+S    
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 365 TWESSDPI 372
              S    
Sbjct: 483 EQLSPTAF 490

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (303), Expect = 1e-28
 Identities = 40/214 (18%), Positives = 73/214 (34%), Gaps = 14/214 (6%)

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
            + KNL +  N               LQ L LS              L++L+ L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSE--SAFPK 278
                         +QKL    ++L       I  L +L +L ++   ++  +    F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 279 LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKN----IDLSFNNLTGGIPTTFEKLAKTNF 334
           L   NL+ L L+   I       +  + ++      +DLS N +    P  F+++ + + 
Sbjct: 148 LT--NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHK 204

Query: 335 MYLTGNKLTGPVPKYIFNSNKN---VDISLNNFT 365
           + L  N  +  V K             + L  F 
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 5e-28
 Identities = 52/296 (17%), Positives = 91/296 (30%), Gaps = 51/296 (17%)

Query: 82  NVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQL 141
           N+T  C               N    +P  L      K LDLS                 
Sbjct: 9   NITYQCME------------LNFY-KIPDNLP--FSTKNLDLS----------------- 36

Query: 142 VELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTG 201
                  N L         +   L+ L +             + L +L  LIL+ N    
Sbjct: 37  ------FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 202 ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTS 260
                 + L++L  L   + N +      IG  K +++L++  + ++   +P   S LT+
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 261 LTDLRISD--LKG-SESAFPKLDKMNLK--TLILTKCLIHGEIPDYIGDMTKLKNIDLSF 315
           L  L +S   ++    +    L +M L   +L L+   ++  I        +L  + L  
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRN 209

Query: 316 NNLTGGIP-TTFEKLAKTNFMYLTGNKLTG-----PVPKYIFNSNKNVDISLNNFT 365
           N  +  +  T  + LA      L   +           K       N+ I      
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  133 bits (337), Expect = 1e-32
 Identities = 52/352 (14%), Positives = 104/352 (29%), Gaps = 57/352 (16%)

Query: 29  IAATANKLHAEEVKALKQIGRKLGKKDWNF---GVDPCSQKGNWELSSD-DKKGFESNVT 84
           I       + ++ KALK I   L  K+W +    ++      NW  + + D  G +  V 
Sbjct: 259 IQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD 318

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTG--------SFSPQW 136
            D +     V  ++L      G +P  + +L  LK L    +  T           +P  
Sbjct: 319 LDNNG---RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 137 ASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG------------------- 177
           +  +   + +   ++   + + L     L++                             
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 178 ---SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW 234
               I   I++L  LQ +  +++ FT +  A   +  N                      
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNL 490

Query: 235 KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLI 294
           K +  + +        +P  +  L  L  L I+               N           
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC--------------NRGISAAQLKAD 536

Query: 295 HGEIPDYIGDMTKLKNIDLSFNNLTG-GIPTTFEKLAKTNFMYLTGNKLTGP 345
              + D      K++   + +NNL       + +K+ K   +    NK+   
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (314), Expect = 1e-29
 Identities = 55/304 (18%), Positives = 97/304 (31%), Gaps = 47/304 (15%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
            +       L+    L+        +         SL+  ++  + NR++    K +  +
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRL 447

Query: 163 TTLKNLSIEGNLFTG-------------------SIPPDIRKLINLQKLILSSNSFTGEL 203
           T L+ +    + FT                    +       L +L  + L +     +L
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 204 PAELTKLTNLNDLRISDNNFSG---------KIPEFIGKWKKIQKLHIQGSSLEG-PIPA 253
           P  L  L  L  L I+ N             ++ +      KIQ  ++  ++LE  P  A
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 254 SISALTSLTDLRISDLKGSE-SAFPKLDKMNLKTLILTKCLIHGEIPDYIG-DMTKLKNI 311
           S+  +  L  L     K     AF       L  L L    I  EIP+       +++ +
Sbjct: 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNV--KLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624

Query: 312 DLSFNNLTGGIPTTFE--KLAKTNFMYLTGNKLTGPVPKYIFNSNKN--------VDISL 361
             S N L   IP  F    +     +  + NK+     + I  S  +        V +S 
Sbjct: 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSY 682

Query: 362 NNFT 365
           N   
Sbjct: 683 NEIQ 686

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (307), Expect = 7e-29
 Identities = 37/293 (12%), Positives = 78/293 (26%), Gaps = 38/293 (12%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL--QLVELSVMGNRLSG-PFPKVLTNIT 163
                      L  L L  N +       + +   Q+  L    N+L   P      ++ 
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 164 TLKNLSIEGNLFTG-----SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
            + ++    N         S   D  K IN   + LS N             + ++ + +
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 219 SDNNFS-------GKIPEFIGKWKKIQKLHIQGSSLEGPIPASI--SALTSLTDL----- 264
           S+N  +                   +  + ++ + L   +      + L  L+++     
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN 763

Query: 265 RISDLKGSESAFPKLDKMNL-KTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323
             S          +L    +          I  + P  I     L  + +  N++     
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 324 TTFEKLAKTNFMYLTGNKLT-GPVP---------KYIFNSNKNVDISLNNFTW 366
               +L     + +  N      V           Y+   +K  DI   +   
Sbjct: 824 KLTPQL---YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.3 bits (242), Expect = 6e-21
 Identities = 43/267 (16%), Positives = 85/267 (31%), Gaps = 45/267 (16%)

Query: 140 QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD----------------- 182
           ++  LS+ G    G  P  +  +T LK LS   +  T S                     
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 183 --------IRKLINLQKLILSSNSFTGEL---PAELTKLTNLNDLRISD-NNFSGKIPEF 230
                   +     L    L  ++        P +     +L D +I +  N    I + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILT 290
           I +  K+Q ++   S       A      +    +    +  E ++  L   +L  + L 
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ--YENEELSWSNLK--DLTDVELY 499

Query: 291 KCLIHGEIPDYIGDMTKLKNIDLSFNNLTG---------GIPTTFEKLAKTNFMYLTGNK 341
            C    ++PD++ D+ +L++++++ N              +    +   K    Y+  N 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 342 LTG-PVPKYIFNSNK--NVDISLNNFT 365
           L   P    +    K   +D   N   
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 5e-17
 Identities = 35/145 (24%), Positives = 49/145 (33%), Gaps = 15/145 (10%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVM---GNRLSGPFPKV 158
           +N              L  +DL  N LT S S  + +  L  LS M    N  S  FP  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771

Query: 159 LTNITTLKNLSIEGNL------FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
             N + LK   I               P  I    +L +L + SN    ++  +L     
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQ 828

Query: 213 LNDLRISDN-NFSGKIPEFIGKWKK 236
           L  L I+DN N S  +       + 
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 29/227 (12%)

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
           N + E +++      D+     +  L L+     G +P  + +LT L  L    ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPI-PASISALTSLTDLRISDLKGSE----SAFPKLDK 281
              F  +         +   +        +     L    +     +         K  +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 282 MNLKTLILTKC--LIHGEIPDYIGDMTKLKNIDLSFNNLTG------------------- 320
           ++LK   +      I   I   I  +TKL+ I  + +  T                    
Sbjct: 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 321 GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNK--NVDISLNNFT 365
               ++  L     + L        +P ++++  +  +++I+ N   
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (328), Expect = 9e-32
 Identities = 46/272 (16%), Positives = 96/272 (35%), Gaps = 12/272 (4%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN 161
            +             L  L L+ N L        +  + L  L  +   +S      L N
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS-D 220
             TL++L +  N  +    P       L+ L   +N+       +++ L    +L ++ +
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS--ALTSLTDLRISDLKG---SESA 275
            N    I          Q L+  G+     I   +    + SL      D+     S + 
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335
           F  L +M+++++ L K        +     + L+ +DL+  +L+  +P+    L+    +
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306

Query: 336 YLTGNKLTGPVPKYIFNSNKNV---DISLNNF 364
            L+ NK    + +   ++  ++    I  N  
Sbjct: 307 VLSANKFEN-LCQISASNFPSLTHLSIKGNTK 337

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (320), Expect = 9e-31
 Identities = 54/272 (19%), Positives = 96/272 (35%), Gaps = 16/272 (5%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGP-FPKVLTNITT 164
            LP+ L  L  LK+L LS N          ++   L  LS+ GN          L N+  
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 165 LKNLSIEGNLFTGS--IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
           L+ L +  +    S      +R L +LQ L LS N           +   L  L ++   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 223 FSGKIPE-FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD------LKGSESA 275
              K  +        ++ L++  S L+         L +L  L +             ++
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335
              L    L+ L+L+ C +          +  + ++DLS N LT         L    ++
Sbjct: 472 LQTLG--RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528

Query: 336 YLTGNKLTGPVPK--YIFNSNKNVDISLNNFT 365
            L  N ++  +P    I +  + +++  N   
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (304), Expect = 8e-29
 Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 15/279 (5%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV 158
                  G   + +  L      D+    ++ +       + +  +++  +         
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
               + L+ L +     +  +P  +  L  L+KL+LS+N F        +   +L  L I
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 219 SDNNFSGKI-PEFIGKWKKIQKLHIQGSSLE--GPIPASISALTSLTDLRISD--LKGSE 273
             N    ++    +   + +++L +    +E        +  L+ L  L +S       +
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 274 S-AFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
           + AF +     L+ L L    +  +       ++  LK ++LS + L       F+ L  
Sbjct: 393 TEAFKECP--QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 332 TNFMYLTGNKLTG--PVPKYIFNSNKNV---DISLNNFT 365
              + L GN              +   +    +S  + +
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (270), Expect = 1e-24
 Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 14/229 (6%)

Query: 103 NLTGTLPTE-LSKLRYLKQLDLSRNCLTGS--FSPQWASL-QLVELSVMGNRLSGPFPKV 158
                L T  L  L  L++LDLS + +  S   + Q  +L  L  L++  N       + 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
                 L+ L +              + L  L+ L LS +            L  L  L 
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 218 ISDNNFSGKI---PEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKG- 271
           +  N+F          +    +++ L +    L      + ++L  +  + +S   L   
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320
           S  A   L       L L    I   +P  +  +++ + I+L  N L  
Sbjct: 516 SIEALSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 1e-22
 Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 16/258 (6%)

Query: 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGS 178
           K  +     L     P         L    N L        + +  L  L +        
Sbjct: 15  KTYNCENLGLN-EI-PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 179 IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ 238
                +    L  L+L++N         L+    L  L       S      +   K ++
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 239 KLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTKCL 293
            L++  + +             L  L      I  L  S+     L +    +L L    
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNGND 190

Query: 294 IHGEIPDYIGDMTKLKNIDLSFNNLTGGIP-----TTFEKLAKTNFMYLTGNKLTGPVPK 348
           I   I     D    ++++         I      +T + L    F  +    ++  V +
Sbjct: 191 I-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 349 YIFNSN-KNVDISLNNFT 365
            +   + +++++  + F 
Sbjct: 250 GLCEMSVESINLQKHYFF 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
           +L+       + L+ +  +DLS N LT S     + L+ + L++  N +S   P +L  +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPIL 546

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
           +  + +++  N    +        +       +                 L  +R+SD  
Sbjct: 547 SQQRTINLRQNPLDCT--CSNIYFLEW--YKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602

Query: 223 FS 224
            S
Sbjct: 603 LS 604

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 3e-29
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 20/234 (8%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPK 157
           L++  L    P +  +L +L+ + +    L             L  L++  N L    P 
Sbjct: 88  LRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPA 144

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDI---------RKLINLQKLILSSNSFTGELPAELT 208
            + ++  L+ LSI        +P  +         + L+NLQ L L        LPA + 
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

Query: 209 KLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
            L NL  L+I ++  S  +   I    K+++L ++G +     P        L  L + D
Sbjct: 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 269 LKGSES---AFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319
                +      +L    L+ L L  C+    +P  I  +     I +  +   
Sbjct: 263 CSNLLTLPLDIHRLT--QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (295), Expect = 5e-29
 Identities = 52/251 (20%), Positives = 89/251 (35%), Gaps = 20/251 (7%)

Query: 107 TLPTELSKLRY--LKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNIT 163
                L          L+L    L   F  Q   L  L  +++    L    P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFA 127

Query: 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL---------TKLTNLN 214
            L+ L++  N    ++P  I  L  L++L + +     ELP  L           L NL 
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 215 DLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES 274
            LR+        +P  I   + ++ L I+ S L   +  +I  L  L +L +       +
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN 244

Query: 275 AFPK-LDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332
            +P        LK LIL  C     +P  I  +T+L+ +DL        +P+   +L   
Sbjct: 245 -YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 333 NFMYLTGNKLT 343
             + +  +   
Sbjct: 304 CIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 38/244 (15%)

Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG-------------------SIPP 181
              L   G+    P+  VL+      N                             +   
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73

Query: 182 DIRKL--INLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239
            +          L L S     + P +  +L++L  + I       ++P+ + ++  ++ 
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLET 131

Query: 240 LHIQGSSLEGPIPASISALTSLTDLRISDLK---------GSESAFPKLDKM-NLKTLIL 289
           L +  + L   +PASI++L  L +L I              S  A  +   + NL++L L
Sbjct: 132 LTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG-NKLTGPVPK 348
               I   +P  I ++  LK++ +  + L+  +      L K   + L G   L    P 
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN-YPP 247

Query: 349 YIFN 352
               
Sbjct: 248 IFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 9e-19
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 3/156 (1%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTL 165
               E   L  L+ L L    +  S     A+LQ L  L +  + LS      + ++  L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG 225
           + L + G     + PP       L++LIL   S    LP ++ +LT L  L +       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL 261
           ++P  I +      + +              A  + 
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 19/167 (11%), Positives = 44/167 (26%), Gaps = 28/167 (16%)

Query: 177 GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
           GS           + L    ++        L++     +   +  + + +          
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------- 54

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG 296
                              S    +       LK +        +     L L    +  
Sbjct: 55  -------------------SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP- 94

Query: 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           + PD    ++ L+++ +    L   +P T ++ A    + L  N L 
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  122 bits (307), Expect = 3e-29
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 39/280 (13%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLK 166
           +LP     L  L         L    S       L +L + GN+L+   P +      L+
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPS------GLCKLWIFGNQLTS-LPVLPPG---LQ 144

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
            LS+  N    S+P        L KL   +N  T  LP   + L  L+   +SDN  +  
Sbjct: 145 ELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA-S 195

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT--DLRISDLKGSESAFPKLDKMNL 284
           +P    +  K+   + + +SL    PA  S L  L     R++ L    S         L
Sbjct: 196 LPTLPSELYKLWAYNNRLTSL----PALPSGLKELIVSGNRLTSLPVLPS--------EL 243

Query: 285 KTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344
           K L+++   +   +P        L ++ +  N LT  +P +   L+    + L GN L+ 
Sbjct: 244 KELMVSGNRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS- 297

Query: 345 PVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVES 384
                      +                  PR +  L  +
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 4e-16
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 26/181 (14%)

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
                L++  +  T ++P  +    ++  L++  N+ T  LPA   +L  L    +S N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQ 92

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM 282
            +  +P       ++       + L    PA  S L  L  +  + L       P     
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKL-WIFGNQLTSLPVLPP----- 141

Query: 283 NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
            L+ L ++   +   +P    ++ KL       N LT  +P     L +   + ++ N+L
Sbjct: 142 GLQELSVSDNQL-ASLPALPSELCKL---WAYNNQLT-SLPMLPSGLQE---LSVSDNQL 193

Query: 343 T 343
            
Sbjct: 194 A 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (302), Expect = 2e-28
 Identities = 47/265 (17%), Positives = 97/265 (36%), Gaps = 18/265 (6%)

Query: 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSI 170
           ++ K    + L + R  L    +     L+ + L+   N+ S  F      + +L  L +
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLT--MNKGSISFK--KVALPSLSYLDL 357

Query: 171 EGNLFT--GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP 228
             N  +  G          +L+ L LS N     + A    L  L  L    +       
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 229 -EFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGS--ESAFPKLDKMN 283
                  +K+  L I  ++ +         LTSL  L+++    K +   + F      N
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT--N 474

Query: 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           L  L L+KC +          + +L+ +++S NNL     + + +L   + +  + N++ 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 344 GPVPKYIFNSNKN---VDISLNNFT 365
                 + +  K+    +++ N+  
Sbjct: 535 T-SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (286), Expect = 1e-26
 Identities = 48/303 (15%), Positives = 91/303 (30%), Gaps = 39/303 (12%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVE 143
           C         +T     Q L+  +P ++      K +DLS N L    S  +++  +L  
Sbjct: 7   CIEV---VPNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL 203
           L +    +     K    +  L NL + GN      P     L +L+ L+          
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 204 PAELTKLTNLNDLRISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262
              + +L  L  L ++ N     K+P +      +  + +  + ++      +  L    
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 263 DLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI 322
            +                     +L ++   I   I D      KL  + L  N  +  I
Sbjct: 181 QV-------------------NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 323 P-TTFEKLAKTNFMYLTGNKLTGPVPKYIFN----------SNKNVDISLNNFTWESSDP 371
             T  + LA  +   L   +        IF           +     ++  N   +    
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 372 IEC 374
             C
Sbjct: 281 FHC 283

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (284), Expect = 3e-26
 Identities = 53/279 (18%), Positives = 90/279 (32%), Gaps = 17/279 (6%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN 161
            L        S    L+ LDLSR  +       W  L  L  L + GN +    P   + 
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISD 220
           +T+L+NL              I +LI L+KL ++ N     +LPA  + LTNL  + +S 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 221 NNFSGKIPEFIGKWKK----IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAF 276
           N         +   ++       L +  + ++  I         L +L +     S +  
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 277 PKLDKM--NLKTLILTKCLIHGEI------PDYIGDMTKL--KNIDLSFNNLTGGIPTTF 326
               +    L    L       E       P  +  +  +      L++ N        F
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 327 EKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
             LA  + M L G  +            +++ I      
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (267), Expect = 3e-24
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 3/169 (1%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQ-WASLQ-LVELSVMGNRLSGPFPKVLT 160
           N    +      L  L+ LD   + L        + SL+ L+ L +        F  +  
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 161 NITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
            +T+L  L + GN F  +   ++     NL  L LS              L  L  L +S
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
            NN          +   +  L    + +E           SL    +++
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (254), Expect = 1e-22
 Identities = 46/286 (16%), Positives = 83/286 (29%), Gaps = 26/286 (9%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQ---------WASLQLVELSVMGNRLS 152
            N +  + T L  L  L    L         + +            + + E  +      
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
                    +  +  +S+ G         D+ K    Q L +       + P     L  
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPF 329

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE--GPIPASISALTSLTDLRISD-- 268
           L  L ++ N  S    + +     +  L +  ++L   G    S     SL  L +S   
Sbjct: 330 LKSLTLTMNKGSI-SFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 269 LKGSESAFPKLDKMNLKTLILTKCLIHGEIP-DYIGDMTKLKNIDLSFNNLTGGIPTTFE 327
                + F  L+   L+ L      +           + KL  +D+S+ N        F 
Sbjct: 388 AIIMSANFMGLE--ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 328 KLAKTNFMYLTGNKLTGPVPKYIFNSNKNV---DISLNNFTWESSD 370
            L   N + + GN         +F +  N+   D+S       S  
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.6 bits (246), Expect = 1e-21
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 32/257 (12%)

Query: 130 GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI-TTLKNLSIEGNLFTGSIPPDIRKLIN 188
           GS +P    +  +    M  +LS    KV  +I ++ KN+ +  N               
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS----KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 189 LQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248
           LQ L LS              L +L++L ++ N      P        ++ L    + L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 249 GPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKL 308
                 I  L +L  L ++               N         +   ++P Y  ++T L
Sbjct: 118 SLESFPIGQLITLKKLNVAH--------------NF--------IHSCKLPAYFSNLTNL 155

Query: 309 KNIDLSFNNLTGGIPTTFEKLAKTNFM----YLTGNKLTGPVPKYIFNSNKNVDISLNNF 364
            ++DLS+N +        + L +   +     ++ N +   +    F   K  +++L   
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGN 214

Query: 365 TWESSDPIECPRGSVNL 381
              S+    C +    L
Sbjct: 215 FNSSNIMKTCLQNLAGL 231

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 38/214 (17%), Positives = 62/214 (28%), Gaps = 27/214 (12%)

Query: 109 PTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSG-PFPKVLTNITTLK 166
                    L+ LDLS N      S  +  L +L  L    + L          ++  L 
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSG 225
            L I               L +L  L ++ NSF     +      TNL  L +S      
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLK 285
                     ++Q L++  ++L     +  + L SL+ L  S               N  
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF--------------N-- 531

Query: 286 TLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319
                   I             L   +L+ N++ 
Sbjct: 532 -------RIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 6e-16
 Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 5/170 (2%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL--QLVELSVMGNRLSGPFPKVLT 160
           N           L  L  L ++ N    +      +    L  L +   +L      V  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220
            +  L+ L++  N           +L +L  L  S N              +L    +++
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL--TSLTDLRISD 268
           N+ +  I E     + +++      ++E    A+   +  + + D   S 
Sbjct: 555 NSVA-CICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 3e-27
 Identities = 44/279 (15%), Positives = 96/279 (34%), Gaps = 26/279 (9%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTN 161
           +L   L +       +K+LDLS N L+   +   A   +L  L++  N L       L +
Sbjct: 21  SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES 78

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
           ++TL+ L +  N        ++    +++ L  ++N+ +  +           ++ +++N
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANN 130

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDL-----RISDLKGSESA 275
             +       G   ++Q L ++ + ++        ++  +L  L      I D+      
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV 188

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335
                   LKTL L+   +   +         +  I L  N L   I             
Sbjct: 189 VFA----KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 336 YLTGNKLT-GPVPKYIFNSNKNVDISLNNFTWESSDPIE 373
            L GN    G +  +   + +   ++       +    E
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 4e-26
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 22/289 (7%)

Query: 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLK 166
           +          K   ++ + L  + +    S   + EL + GN LS      L   T L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
            L++  N+       D+  L  L+ L L++N        EL    ++  L  ++NN S +
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM--NL 284
           +     + +  + +++  + +           + +  L +   +     F +L      L
Sbjct: 114 VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 285 KTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344
           + L L    I+ ++   +    KLK +DLS N L   +   F+  A   ++ L  NKL  
Sbjct: 172 EHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 345 PVPKYIFNSN--KNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNK 391
            + K +  S   ++ D+  N F       +         V++ +    K
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGF---HCGTLRDFFSKNQRVQTVAKQTVK 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 1e-26
 Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLK 166
           T  + L  L  L++L L+ + ++   SP     ++  L++  N         L+N+T L 
Sbjct: 101 TDISALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLN 158

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
            L++  +      P  I  L +L  L L+ N      P  L  LT+L+      N  +  
Sbjct: 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESAFPKLDK 281
            P  +    ++  L I  + +    P  ++ L+ LT L     +ISD+    +A   L  
Sbjct: 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----NAVKDLT- 265

Query: 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNK 341
             LK L +    I       + ++++L ++ L+ N L          L     ++L+ N 
Sbjct: 266 -KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 342 LTG 344
           +T 
Sbjct: 323 ITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 6e-26
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 23/238 (9%)

Query: 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSI 170
            L+ L  +  L+L  N      SP      L  L+V  +++    P  + N+T L +LS+
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEF 230
             N      P  +  L +L       N  T   P  +  +T LN L+I +N  +   P  
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238

Query: 231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESAFPKLDKMNLK 285
           +    ++  L I  + +       +  LT L  L     +ISD+    S    L    L 
Sbjct: 239 LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI----SVLNNLS--QLN 290

Query: 286 TLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           +L L    +  E  + IG +T L  + LS N++T   P     L+K +        + 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (260), Expect = 3e-24
 Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 33/281 (11%)

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS 152
             +   L+  ++T  +     +L  + +L ++   +  S         L  L++ GN+++
Sbjct: 23  EGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQIT 79

Query: 153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
              P  L+N+  L NL I  N  T      ++ L NL++L L+ ++ +    + L  LT 
Sbjct: 80  DISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTK 133

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RIS 267
           +  L +  N+        +     +  L +  S ++   P  I+ LT L  L     +I 
Sbjct: 134 MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

Query: 268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327
           D+    S    L   +L         I    P  + +MT+L ++ +  N +T   P    
Sbjct: 191 DI----SPLASLT--SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240

Query: 328 KLAKTNFMYLTGNKLTGPVPKYIFNSNKN---VDISLNNFT 365
            L++  ++ +  N+++                +++  N  +
Sbjct: 241 NLSQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSNQIS 278

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 2e-23
 Identities = 49/236 (20%), Positives = 99/236 (41%), Gaps = 17/236 (7%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
              + L    +  L +  +T   + +     + +L V G +++    + +  +T L+ L+
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE 229
           + GN  T   P  +  L+ L  L + +N  T    + L  LTNL +L ++++N S   P 
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP- 127

Query: 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE-SAFPKLDKMNLKTLI 288
            +    K+  L++  +       + +S +T L  L +++ K  + +    L   +L +L 
Sbjct: 128 -LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIANLT--DLYSLS 183

Query: 289 LTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344
           L    I    P  +  +T L       N +T   P     + + N + +  NK+T 
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 7e-21
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 19/250 (7%)

Query: 118 LKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG 177
              L      +     P     + +   +    ++         + ++  L + G     
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
           SI   I  L NL+ L L+ N  T   P  L+ L  L +L I  N  +      +     +
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFPKLDKMNLKTLILTKCLIH 295
           ++L++   ++    P  ++ LT +  L +         S    +    L  L +T+  + 
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMT--GLNYLTVTESKVK 168

Query: 296 GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNK 355
              P  I ++T L ++ L++N +    P     L   ++     N++T   P        
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLN 224

Query: 356 NVDISLNNFT 365
           ++ I  N  T
Sbjct: 225 SLKIGNNKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 1e-19
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
           + L+ L  L       N +T   +P     +L  L +  N+++   P  L N++ L  L 
Sbjct: 193 SPLASLTSLHYFTAYVNQIT-DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE 229
           I  N  +  I   ++ L  L+ L + SN  +    + L  L+ LN L +++N    +  E
Sbjct: 250 IGTNQIS-DINA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
            IG    +  L +  + +    P  +++L+ +     ++
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (278), Expect = 5e-26
 Identities = 46/279 (16%), Positives = 97/279 (34%), Gaps = 26/279 (9%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTN 161
           +L   L +       +K+LDLS N L+   +   A   +L  L++  N L       L +
Sbjct: 21  SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES 78

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
           ++TL+ L +  N        ++    +++ L  ++N+ +  +           ++ +++N
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANN 130

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDL-----RISDLKGSESA 275
             +       G   ++Q L ++ + ++        ++  +L  L      I D+      
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV 188

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335
                   LKTL L+   +   +         +  I L  N L   I             
Sbjct: 189 VFA----KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 336 YLTGNKLTGPVPKYIFNSNKNV-DISLNNFTWESSDPIE 373
            L GN       +  F+ N+ V  ++       +    E
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 5e-25
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 19/259 (7%)

Query: 115 LRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173
               K   ++ + L  + +    S   + EL + GN LS      L   T L+ L++  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGK 233
           +       D+  L  L+ L L++N        EL    ++  L  ++NN S ++     +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SR 118

Query: 234 WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM--NLKTLILTK 291
            +  + +++  + +           + +  L +   +     F +L      L+ L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
             I+ ++   +    KLK +DLS N L   +   F+  A   ++ L  NKL   + K + 
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALR 234

Query: 352 NSN--KNVDISLNNFTWES 368
            S   ++ D+  N F   +
Sbjct: 235 FSQNLEHFDLRGNGFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (267), Expect = 1e-24
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 17/270 (6%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKV 158
            +T     +      ++ LDL  N +        +    +L+   L++  N +       
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE--HLNLQYNFIYD-VKG- 186

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
                 LK L +  N     + P+ +    +  + L +N     +   L    NL    +
Sbjct: 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 219 SDNNFS-GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP 277
             N F  G + +F  K +++Q +  Q              + +L        +   + F 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 278 ----KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN 333
                L +     L          +     +  + + ID         I     +     
Sbjct: 305 DRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 334 FMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363
            +      L          ++  +D +L  
Sbjct: 364 TLEQKKKALD-EQVSNGRRAHAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.4 bits (227), Expect = 1e-19
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 22/216 (10%)

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
           +  N    K   +  +    ++    +   N+++L LS N  +    A+L   T L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGS 272
           +S N       +       ++ L +  + ++      +    S+  L      IS +  S
Sbjct: 65  LSSNVLYE-TLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV--S 115

Query: 273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG-GIPTTFEKLAK 331
            S          K + L    I        G  ++++ +DL  N +              
Sbjct: 116 CSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 332 TNFMYLTGNKLTGPVPKYIFNSN-KNVDISLNNFTW 366
              + L  N +   V   +  +  K +D+S N   +
Sbjct: 171 LEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLAF 205

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 5/218 (2%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLK 166
            +   L   + L+  DL  N         + S      +V    +     +     T   
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILS----SNSFTGELPAELTKLTNLNDLRISDNN 222
                         P   +LI L++   +      S T  L  E        ++      
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM 282
           +   I +   + +    L  +  +L+  +     A   L       +   E      ++ 
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 283 NLKTLI-LTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319
            L+ L  + K      +         +++ D+  +  T
Sbjct: 408 PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (273), Expect = 2e-25
 Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 20/262 (7%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLK 166
           +  + L+KL  L+ L  + N ++   +P      L ELS+ GN+L       L ++T L 
Sbjct: 190 SDISVLAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLT 246

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
           +L +  N  +   P  +  L  L +L L +N  +   P  L  LT L +L +++N     
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFPKLDKM-N 283
            P  I   K +  L +  +++    P  +S+LT L  L   +  +         L  + N
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD----VSSLANLTN 354

Query: 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           +  L      I    P  + ++T++  + L+    T         ++  N +      L 
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 344 GPVPKYIFNSNKNVDISLNNFT 365
            P       S    DI+ N  +
Sbjct: 413 APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 2e-24
 Identities = 42/254 (16%), Positives = 93/254 (36%), Gaps = 17/254 (6%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171
            + L    +  L +  +T +   Q    Q+  L      +       +  +  L  ++  
Sbjct: 20  DTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 76

Query: 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI 231
            N  T   P  ++ L  L  +++++N         L  LTNL  L + +N  +   P  +
Sbjct: 77  NNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--L 130

Query: 232 GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTK 291
                + +L +  +++       +S LTSL  L   +          L    L+ L ++ 
Sbjct: 131 KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLT--TLERLDISS 186

Query: 292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
             +       +  +T L+++  + N ++   P     L   + + L GN+L         
Sbjct: 187 NKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASL 242

Query: 352 NSNKNVDISLNNFT 365
            +  ++D++ N  +
Sbjct: 243 TNLTDLDLANNQIS 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (259), Expect = 1e-23
 Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 21/274 (7%)

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS 152
             +   L   N+T T+    + L  +  L   R  +  S         L +++   N+L+
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLT 81

Query: 153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
              P  L N+T L ++ +  N      P  +  L NL  L L +N  T   P  L  LTN
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTN 135

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272
           LN L +S N  S      +     +Q+L   G+ +    P  ++ LT+L  L IS  K S
Sbjct: 136 LNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVS 190

Query: 273 ESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
           +     L K+ NL++LI T   I    P  +G +T L  + L+ N L      T   L  
Sbjct: 191 D--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTN 244

Query: 332 TNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
              + L  N+++   P         + +  N  +
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF 223
            L + +I  +     I  D   L    K +L   + T  +    T L  +  L+      
Sbjct: 2   PLGSATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 224 SGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFPKLDK 281
                + +     + +++   + L    P  +  LT L D+ +++  +    +    L  
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TPLANLT- 112

Query: 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNK 341
            NL  L L    I    P  + ++T L  ++LS N ++    +    L     +   GN+
Sbjct: 113 -NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQ 166

Query: 342 LTGPVP 347
           +T   P
Sbjct: 167 VTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 7/141 (4%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
           + +S L+ L  L L  N ++   SP  +  +L  L    N++S      L N+T +  LS
Sbjct: 303 SPISNLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLS 359

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE 229
              N  +   P  +  L  + +L L+  ++T         ++  N ++          P 
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APA 415

Query: 230 FIGKWKKIQKLHIQGSSLEGP 250
            I       +  I  +     
Sbjct: 416 TISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 10/154 (6%)

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272
           L    I+ +    +I        +  K  +  +++   +    + L  +T L+   L   
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 273 E-SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
                  L+  NL  +  +   +    P  + ++TKL +I ++ N +    P     L  
Sbjct: 60  SIDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 332 TNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
              + L  N++T   P     +   +++S N  +
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 28/142 (19%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
           + +S L  L++L    N ++   S       +  LS   N++S   P  L N+T +  L 
Sbjct: 325 SPVSSLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN-------- 221
           +    +T + P + +  +++   + +        PA ++   +  +  I+ N        
Sbjct: 382 LNDQAWT-NAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSYTNEV 439

Query: 222 ---------------NFSGKIP 228
                           FSG + 
Sbjct: 440 SYTFSQPVTIGKGTTTFSGTVT 461

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 1e-23
 Identities = 63/312 (20%), Positives = 120/312 (38%), Gaps = 40/312 (12%)

Query: 85  CDCSSATCHV------------------VTIALKAQNLTGTLPTELSKLRYLKQLDLSRN 126
           C+CS+    V                    + L    +      E +   +L++L+L+ N
Sbjct: 7   CECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 127 CLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD 182
            ++    G+F+    +L+ + L    NRL      V T ++ L  L I  N     +   
Sbjct: 67  IVSAVEPGAFNNL-FNLRTLGLR--SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 183 I-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPE--FIGKWKKIQ 238
           + + L NL+ L +  N     +     + L +L  L +   N +  IP          + 
Sbjct: 123 MFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSH-LHGLI 179

Query: 239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK-LDKMNLKTLILTKCLIHGE 297
            L ++  ++      S   L  L  L IS     ++  P  L  +NL +L +T C +   
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-A 238

Query: 298 IPDY-IGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN 356
           +P   +  +  L+ ++LS+N ++    +   +L +   + L G +L   V  Y F     
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNY 297

Query: 357 V---DISLNNFT 365
           +   ++S N  T
Sbjct: 298 LRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 51/248 (20%), Positives = 86/248 (34%), Gaps = 21/248 (8%)

Query: 107 TLPTE-LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
            +P    + L  L +LD+S N +       F        L  L V  N L     +  + 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL---YNLKSLEVGDNDLVYISHRAFSG 150

Query: 162 ITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220
           + +L+ L++E    T SIP +    L  L  L L   +          +L  L  L IS 
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESA 275
             +   +         +  L I   +L      ++  L  L  L      IS +    S 
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EGSM 267

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNF 334
             +L    L+ + L    +   +  Y    +  L+ +++S N LT    + F  +     
Sbjct: 268 LHELL--RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

Query: 335 MYLTGNKL 342
           + L  N L
Sbjct: 325 LILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 96  TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRL 151
            + +       T+         L  L ++   LT     +       L+ + LS   N +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLS--YNPI 260

Query: 152 SGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TK 209
           S     +L  +  L+ + + G      + P   R L  L+ L +S N  T  L   +   
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHS 318

Query: 210 LTNLNDLRISDNNFS 224
           + NL  L +  N  +
Sbjct: 319 VGNLETLILDSNPLA 333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 5e-23
 Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 34/299 (11%)

Query: 99  LKAQNLTGTLPTE-LSKLRYLKQLDLSRNCLTGSFSPQW-ASLQ-LVELSVMGNRLSGPF 155
           L +Q    T+  E    L  L+ LDL  + +     P     L  L EL +    LS   
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 156 --PKVLTNITTLKNLSIEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLT- 211
                  N+  L  L +  N      + P   KL +L+ +  SSN        EL  L  
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 212 -NLNDLRISDNNFSGKIPEFIGKWKK------IQKLHIQGSSLEGPIPA---------SI 255
             L+   ++ N+   ++    GK         ++ L + G+     I             
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 256 SALTSLTDLRISDLKG------SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLK 309
            +L     +  +           ++ F  L + +++ L L+   +          +  LK
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 310 NIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV---DISLNNFT 365
            ++L++N +       F  L     + L+ N L   +    F     V   D+  N+  
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 1e-21
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 22/274 (8%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN 161
            +          L+ LK L+L+ N +       +  L  L  L++  N L   +      
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
           +  +  + ++ N          + L  LQ L L  N+ T      +  + ++ D+ +S N
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN 391

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDLRISDLK----GSESAF 276
                             +H+  + LE   I   +  +  L  L ++  +      +   
Sbjct: 392 KLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 277 PKLDKMNLKTLILTKCLIHGEIPDYI-----GDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
            +    +L+ L L + ++       +       ++ L+ + L+ N L    P  F  L  
Sbjct: 448 SENP--SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 332 TNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
              + L  N+LT      +  + + +DIS N   
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 5e-20
 Identities = 41/276 (14%), Positives = 89/276 (32%), Gaps = 20/276 (7%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQW-ASL-QLVELSVMGNRLSGPFPKVLT 160
            +     +    L  L+ L+L       +   +   +L  L  L +  +++    P    
Sbjct: 35  YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94

Query: 161 NITTLKNLSIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLR 217
            +  L  L +     + ++  D   R L  L +L LS N      L     KL +L  + 
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 218 ISDNNFSGKIPE-FIG-KWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISDLKGSES 274
            S N             + K +    +  +SL   +       +    ++ +  L  S +
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 275 AFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN- 333
            +      N          I       +     +      F+N+      TF  LA+++ 
Sbjct: 215 GWTVDITGNFSN------AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268

Query: 334 -FMYLTGNKLTGPVPKYIFNSNKNV---DISLNNFT 365
             + L+   +   +   +F + K++   +++ N   
Sbjct: 269 RHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 43/271 (15%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTN 161
            +          L  L+ L+LS N L   +S  +  L ++  + +  N ++    +    
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTG-------------------- 201
           +  L+ L +  N  T      I  + ++  + LS N                        
Sbjct: 361 LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415

Query: 202 -ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW-KKIQKLHIQGSSLEGPIPASI--SA 257
            ++   L ++ +L  L ++ N FS    +        +++L +  + L+      +    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 258 LTSLTDLRISDLKG------SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNI 311
              L+ L++  L            F  L    L+ L L    +   +         L+ +
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLT--ALRGLSLNSNRLT-VLSHND-LPANLEIL 531

Query: 312 DLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
           D+S N L    P  F  L   + + +T NK 
Sbjct: 532 DISRNQLLAPNPDVFVSL---SVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 51/297 (17%), Positives = 89/297 (29%), Gaps = 51/297 (17%)

Query: 84  TCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVE 143
           +C              +  NLT  +P  L+    L    LS N              +  
Sbjct: 1   SCSFDGRIAF-----YRFCNLT-QVPQVLNTTERL---LLSFN-------------YIRT 38

Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGE 202
           ++                +  L+ L +       +I  +  R L NL+ L L S+     
Sbjct: 39  VT----------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-F 87

Query: 203 LPAE-LTKLTNLNDLRISDNNFSGKI--PEFIGKWKKIQKLHIQGSSLEG-PIPASISAL 258
           L  +    L +L +LR+     S  +    +    K + +L +  + +    +  S   L
Sbjct: 88  LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 259 TSLTDLRISDLK---GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTK------LK 309
            SL  +  S  +     E     L    L    L    ++  +    G          L+
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207

Query: 310 NIDLSFNNLTGGIPTTFEK-LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
            +D+S N  T  I   F   ++K+    L             F  +   D   N F 
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---GFGFHNIKDPDQNTFA 261

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 2e-15
 Identities = 43/210 (20%), Positives = 68/210 (32%), Gaps = 22/210 (10%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI-PEFIGKWKK 236
            +P  +      ++L+LS N       +    L  L  L +        I  E       
Sbjct: 18  QVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTK 291
           ++ L +  S +    P +   L  L +L      +SD    +  F  L    L  L L+K
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK--ALTRLDLSK 132

Query: 292 CLIHG-EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN--FMYLTGNKLTGPVPK 348
             I    +    G +  LK+ID S N +        E L      F  L  N L   V  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 349 YIFNSNKN--------VDISLNNFTWESSD 370
                           +D+S N +T + + 
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 6e-15
 Identities = 43/298 (14%), Positives = 98/298 (32%), Gaps = 44/298 (14%)

Query: 111 ELSKLRYLKQLDLSRNCLT----GSFSPQWASLQ---------LVELSVMGNRLSGPFPK 157
              +   L+ LD+S N  T    G+FS   +  Q         ++      + +  P   
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 158 VLTNI--TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLN 214
               +  +++++L +       S+   +   L +L+ L L+ N            L NL 
Sbjct: 259 TFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 215 DLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDL 269
            L +S N              K+  + +Q + +      +   L  L  L      ++ +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 270 KGSES------------AFPKLDKMNLKTLILTKCLIHG-EIPDYIGDMTKLKNIDLSFN 316
               S              PK++ +    + L++  +   +I  ++  +  L+ + L+ N
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKIN-LTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

Query: 317 NLTGGIPT-TFEKLAKTNFMYLTGNKLTGP----VPKYIFNSNKNV---DISLNNFTW 366
             +      T  +      ++L  N L       +   +F    ++    ++ N    
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 17/197 (8%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSG-PFPK 157
           L+  +L     T +  +  +  + LS N L  +      +  L+ LS   NRL       
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLS--ENRLENLDILY 420

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTGELPAELTK-----L 210
            L  +  L+ L +  N F+ S   D    +  +L++L L  N        EL       L
Sbjct: 421 FLLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD-- 268
           ++L  L ++ N  +   P        ++ L +  + L   +  +     +L  L IS   
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHN-DLPANLEILDISRNQ 537

Query: 269 -LKGSESAFPKLDKMNL 284
            L  +   F  L  +++
Sbjct: 538 LLAPNPDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPK 157
           L+    T         L +L+ L L+ N L       ++ L  L  LS+  NRL+     
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDL 216
            L     L+ L I  N    +  PD+   ++L  L ++ N F  E   +      N  ++
Sbjct: 523 DLP--ANLEILDISRNQLL-APNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNV 577

Query: 217 RISDN 221
            I+  
Sbjct: 578 TIAGP 582

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (251), Expect = 1e-22
 Identities = 55/298 (18%), Positives = 102/298 (34%), Gaps = 51/298 (17%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQ 140
           C CS+    V+      +NL   +P  +S     + L+L  N +      SF        
Sbjct: 39  CSCSNQFSKVI---CVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR---H 89

Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSF 199
           L  L +  N +          +  L  L +  N  T +IP      L  L++L L +N  
Sbjct: 90  LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148

Query: 200 TGELPAEL-TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL 258
              +P+    ++ +L  L + +               ++   +I   + EG        L
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELK-------------RLS--YISEGAFEG--------L 184

Query: 259 TSLTDLRISDLKGSE-SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNN 317
           ++L  L ++     E      L    L  L L+   +    P     +  L+ + +  + 
Sbjct: 185 SNLRYLNLAMCNLREIPNLTPLI--KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN-VDISLNNFTWESSDPIEC 374
           +       F+ L     + L  N LT  +P  +F    +   I L++      +P  C
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHH------NPWNC 293

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 1e-22
 Identities = 45/240 (18%), Positives = 81/240 (33%), Gaps = 39/240 (16%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTL 165
            LP     L ++       N L     P+  +L  L  +    N L    P +  +   L
Sbjct: 167 KLPDLPPSLEFI---AAGNNQLE--ELPELQNLPFLTAIYADNNSLKK-LPDLPLS---L 217

Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG 225
           +++    N+      P+++ L  L  +   +N     LP     L  LN   + DN  + 
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLT- 270

Query: 226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT--DLRISDLKGSESAFPKLDKMN 283
            +PE       +       S L          L  L      I  L             +
Sbjct: 271 DLPELPQSLTFLDVSENIFSGL----SELPPNLYYLNASSNEIRSLCDLPP--------S 318

Query: 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           L+ L ++   +  E+P       +L+ +  SFN+L   +P   + L +   +++  N L 
Sbjct: 319 LEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.1 bits (237), Expect = 8e-21
 Identities = 50/251 (19%), Positives = 95/251 (37%), Gaps = 39/251 (15%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLK 166
               EL  L +L  +    N L  +      SL+   L+V  N L+   P++  ++T L 
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE--ALNVRDNYLTD-LPELPQSLTFLD 283

Query: 167 NLSIEGNLFTGSIPPDIRKLI--------------NLQKLILSSNSFTGELPAELTKLTN 212
                 +  +  +PP++  L               +L++L +S+N    ELPA   +L  
Sbjct: 284 VSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER 341

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272
           L     S N+ + ++PE       +++LH++ + L    P       S+ DLR++     
Sbjct: 342 LI---ASFNHLA-EVPELPQN---LKQLHVEYNPLRE-FPDIPE---SVEDLRMNSHLAE 390

Query: 273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332
               P+    NLK L +    +  E PD       ++++ ++   +        E   K 
Sbjct: 391 VPELPQ----NLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKL 442

Query: 333 NFMYLTGNKLT 343
                  +   
Sbjct: 443 EDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.7 bits (236), Expect = 1e-20
 Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 46/258 (17%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL--------------QLVELSVMG 148
           NLT  +P E   ++   +   + +    +  P                   Q  EL +  
Sbjct: 22  NLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80

Query: 149 NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT 208
             LS   P++  +   L++L    N  T  +P   + L +L     +  + + +LP  L 
Sbjct: 81  LGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-DLPPLLE 134

Query: 209 KLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT--DLRI 266
                  L +S+N    K+PE +     ++ + +  +SL+  +P    +L  +   + ++
Sbjct: 135 Y------LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQL 185

Query: 267 SDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT 325
            +L       P+L  +  L  +      +  ++PD       L++I    N L       
Sbjct: 186 EEL-------PELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--ELPE 232

Query: 326 FEKLAKTNFMYLTGNKLT 343
            + L     +Y   N L 
Sbjct: 233 LQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.6 bits (189), Expect = 8e-15
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 35/196 (17%)

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL------------ 210
           T L+      +  T  +P +   + +  +   + + +    P    +             
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 211 -TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT--DLRIS 267
               ++L +++   S  +PE       ++ L    +SL   +P    +L SL   +  + 
Sbjct: 70  DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327
            L    S  P      L+ L ++   +  ++P+ + + + LK ID+  N+L   +P    
Sbjct: 125 AL----SDLPP----LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP 173

Query: 328 KLAKTNFMYLTGNKLT 343
            L     +    N+L 
Sbjct: 174 SLEF---IAAGNNQLE 186

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.3 bits (245), Expect = 6e-22
 Identities = 53/295 (17%), Positives = 106/295 (35%), Gaps = 45/295 (15%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVE 143
           C CS+    VV      + L+  +P  +      + L+L  N +    +  +  L  L  
Sbjct: 50  CSCSNQFSKVV---CTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEV 103

Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGE 202
           L +  N +          + +L  L +  N  T  IP      L  L++L L +N     
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-S 161

Query: 203 LPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL 261
           +P+    ++ +L  L + +               K++  +I   + EG        L +L
Sbjct: 162 IPSYAFNRVPSLMRLDLGELK-------------KLE--YISEGAFEG--------LFNL 198

Query: 262 TDLRISDLKGSE-SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320
             L +      +      L    L+ L ++        P     ++ LK + +  + ++ 
Sbjct: 199 KYLNLGMCNIKDMPNLTPLV--GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 321 GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN-VDISLNNFTWESSDPIEC 374
                F+ LA    + L  N L+  +P  +F   +  V++ L++      +P  C
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHH------NPWNC 304

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.2 bits (239), Expect = 6e-21
 Identities = 52/271 (19%), Positives = 91/271 (33%), Gaps = 43/271 (15%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
           NL+ +LP  L     +  L++++N L  S     ASL+   L    NRLS   P++  + 
Sbjct: 70  NLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLE--YLDACDNRLST-LPELPAS- 121

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
             LK+L ++ N  T  +P        L+ +   +N  T  LP   T L  L+   + +N 
Sbjct: 122 --LKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLS---VRNNQ 171

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM 282
            +  +PE       ++ L +  + LE  +PA         +  I                
Sbjct: 172 LT-FLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEIF--------------- 211

Query: 283 NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
                   +  I   IP+ I  +     I L  N L+  I  +  +       +      
Sbjct: 212 ----FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 343 TGPVPKYIFNSNKNVDISLNNFTWESSDPIE 373
           +    +         D     F       + 
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 43/278 (15%), Positives = 87/278 (31%), Gaps = 43/278 (15%)

Query: 149 NRLSGPFPKVLTNITTLKNLSIEGNLFTG--SIPPDIRKLINLQKLILSSNSFTGELPAE 206
           N +SG +    +     +  ++ G       S+  +   +    +L L+  + +  LP  
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNLS-SLPDN 77

Query: 207 LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL----- 261
           L     +  L I+ N     +PE       ++ L    + L   +P   ++L  L     
Sbjct: 78  L--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLST-LPELPASLKHLDVDNN 130

Query: 262 ---------TDLRISDLKGSE-SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNI 311
                      L   +   ++ +  P+L   +L+ L +    +   +P+    +  L   
Sbjct: 131 QLTMLPELPALLEYINADNNQLTMLPELPT-SLEVLSVRNNQL-TFLPELPESLEAL--- 185

Query: 312 DLSFNNLTGGIPTTFEKLAK----TNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFT 365
           D+S N L   +P    +         F     N++T  +P+ I +      + +  N   
Sbjct: 186 DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL- 242

Query: 366 WESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNF 403
              S  I            Y  PR              
Sbjct: 243 ---SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 18/246 (7%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
            N    LP   + L  L    +  N LT        SL+   L V  N L    P V   
Sbjct: 149 NNQLTMLPELPTSLEVL---SVRNNQLT-FLPELPESLE--ALDVSTNLLES-LPAVPVR 201

Query: 162 ITTLKN----LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
               +          N  T  IP +I  L     +IL  N  +  +   L++ T   D  
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP 277
                FS    +     + +       +       + +S +           + + +   
Sbjct: 261 GPRIYFSMSDGQQNTLHRPLA--DAVTAWFPENKQSDVSQIWH----AFEHEEHANTFSA 314

Query: 278 KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYL 337
            LD+++             ++  ++  ++    +      +      + E      +  L
Sbjct: 315 FLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNL 374

Query: 338 TGNKLT 343
               L 
Sbjct: 375 RKTLLV 380

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 53/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQ 140
           C C +      +     Q L   +P  +      +++ L  N ++     SF        
Sbjct: 6   CVCYNEPKVTTS--CPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRAC---RN 57

Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSF 199
           L  L +  N L+       T +  L+ L +  N    S+ P     L  L  L L     
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 200 TGELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL 258
             EL       L  L  L + DN                    +   +           L
Sbjct: 118 Q-ELGPGLFRGLAALQYLYLQDNALQ----------------ALPDDTFRD--------L 152

Query: 259 TSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNID 312
            +LT L     RIS +   E AF  L   +L  L+L +  +   +  +   D+ +L  + 
Sbjct: 153 GNLTHLFLHGNRISSV--PERAFRGLH--SLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

Query: 313 LSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
           L  NNL+         L    ++ L  N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 159 LTNI-----TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTN 212
           L  +        + + + GN  +  +P    R   NL  L L SN       A  T L  
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 213 LNDLRISDNNFSGKIPE--FIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISD- 268
           L  L +SDN     +    F G   ++  LH+    L+  +   +   L +L  L + D 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDN 139

Query: 269 -LKG-SESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTT 325
            L+   +  F  L   NL  L L    I   +P+     +  L  + L  N +    P  
Sbjct: 140 ALQALPDDTFRDL--GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 326 FEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV-DISLNN 363
           F  L +   +YL  N L+  +P       + +  + LN+
Sbjct: 197 FRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 112 LSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLK 166
              L  L+ L L  N L      +F      L  L  L + GNR+S    +    + +L 
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 167 NLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNF 223
            L +  N     + P   R L  L  L L +N+ +  LP E L  L  L  LR++DN +
Sbjct: 181 RLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 45/244 (18%), Positives = 98/244 (40%), Gaps = 24/244 (9%)

Query: 107 TLPTE-LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
            LP   L   R ++ L+L+   +      +F+    ++Q + +    N +    P V  N
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMG--FNAIRYLPPHVFQN 115

Query: 162 ITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRIS 219
           +  L  L +E N  + S+P  I      L  L +S+N+    +  +     T+L +L++S
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKL 279
            N  +  +   +     +   ++  + L      +++   ++ +L  S    +       
Sbjct: 174 SNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV--VRGP 223

Query: 280 DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
             + L  L L    +  +    + +   L  +DLS+N L   +   F K+ +   +Y++ 
Sbjct: 224 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 340 NKLT 343
           N+L 
Sbjct: 282 NRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 48/275 (17%), Positives = 92/275 (33%), Gaps = 38/275 (13%)

Query: 112 LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
              +  L  L L RN L+    G F       +L  LS+  N L           T+L+N
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTSLQN 169

Query: 168 LSIEGNLFTGSIPPD-----------------IRKLINLQKLILSSNSFTGELPAELTKL 210
           L +  N  T  +                    +   I +++L  S NS    +   +   
Sbjct: 170 LQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--N 225

Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD-- 268
             L  L++  NN +      +  +  + ++ +  + LE  +      +  L  L IS+  
Sbjct: 226 VELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 269 LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328
           L         +    LK L L+   +   +        +L+N+ L  N++     +T   
Sbjct: 284 LVALNLYGQPIP--TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340

Query: 329 LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363
           L     + L+ N       + +F +     +   +
Sbjct: 341 LKN---LTLSHNDWDCNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 7e-18
 Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 31/284 (10%)

Query: 80  ESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQ 135
           +SN+  DC     + V I ++ Q++      E   L   K +    + +           
Sbjct: 14  DSNLQYDC---VFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 136 WASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLIL 194
              ++L+ L+    ++            T++ L +  N     +PP + + +  L  L+L
Sbjct: 69  -RQVELLNLN--DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 124

Query: 195 SSNSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPEFIGKW-KKIQKLHIQGSSLEGPIP 252
             N  +  LP  +      L  L +S+NN   +I +   +    +Q L +  + L   + 
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VD 181

Query: 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNID 312
             +S + SL    +S    S         + ++ L  +   I+  +        +L  + 
Sbjct: 182 --LSLIPSLFHANVSYNLLST--LAIP--IAVEELDASHNSIN-VVRG--PVNVELTILK 232

Query: 313 LSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN 356
           L  NNLT               + L+ N+L   +  + F   + 
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQR 273

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 11/171 (6%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV 158
           L   N++  L + L+    +++LD S N +         +++L  L +  N L+      
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSIN--VVRGPVNVELTILKLQHNNLTD--TAW 243

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217
           L N   L  + +  N     I      K+  L++L +S+N     L      +  L  L 
Sbjct: 244 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301

Query: 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
           +S N+    +     ++ +++ L++  +S+   +   +S   +L +L +S 
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 36/236 (15%)

Query: 156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLN 214
              L       ++ I+          +   L N + +   +++   +LPA  L     + 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 72

Query: 215 DLRISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDL-----RIS 267
            L ++D     +I  +       IQKL++  +++   +P  +   +  LT L      +S
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

Query: 268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIP--- 323
            L      F       L TL ++   +   I D      T L+N+ LS N LT  +    
Sbjct: 131 SL--PRGIFHNTP--KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

Query: 324 --------------TTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
                         +T         +  + N +   V   +      + +  NN T
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV-VRGPVNVELTILKLQHNNLT 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.8 bits (233), Expect = 4e-20
 Identities = 50/269 (18%), Positives = 107/269 (39%), Gaps = 27/269 (10%)

Query: 107 TLPTE-LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
            LP   L   R ++ L+L+   +      +F+    ++Q + +    N +    P V  N
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMG--FNAIRYLPPHVFQN 121

Query: 162 ITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRIS 219
           +  L  L +E N  + S+P  I      L  L +S+N+    +  +     T+L +L++S
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKL 279
            N  +  +   +     +   ++  + L      +++   ++ +L  S      +     
Sbjct: 180 SNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS--INVVRGP 229

Query: 280 DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
             + L  L L    +  +    + +   L  +DLS+N L   +   F K+ +   +Y++ 
Sbjct: 230 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 340 NKLTGPVPKYIFNSN--KNVDISLNNFTW 366
           N+L   +  Y       K +D+S N+   
Sbjct: 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLLH 315

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 4e-18
 Identities = 51/307 (16%), Positives = 101/307 (32%), Gaps = 44/307 (14%)

Query: 112 LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
              +  L  L L RN L+    G F       +L  LS+  N L           T+L+N
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTP---KLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 168 LSIEGNLFTGSIPPD-----------------IRKLINLQKLILSSNSFTGELPAELTKL 210
           L +  N  T  +                    +   I +++L  S NS    +   +   
Sbjct: 176 LQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--N 231

Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD-- 268
             L  L++  NN +      +  +  + ++ +  + LE  +      +  L  L IS+  
Sbjct: 232 VELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 269 LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328
           L         +    LK L L+   +   +        +L+N+ L  N++     +T   
Sbjct: 290 LVALNLYGQPIP--TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346

Query: 329 LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSP 388
           L     + L+ N       + +F +     +   +         +      + +    S 
Sbjct: 347 LKN---LTLSHNDWDCNSLRALFRNVARPAVDDADQH------CKIDYQLEHGLCCKESD 397

Query: 389 RNKLDKV 395
           +  LD++
Sbjct: 398 KPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 6e-18
 Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 31/284 (10%)

Query: 80  ESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQ 135
           +SN+  DC     + V I ++ Q++      E   L   K +    + +           
Sbjct: 20  DSNLQYDC---VFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 136 WASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLIL 194
              ++L+ L+    ++            T++ L +  N     +PP + + +  L  L+L
Sbjct: 75  -RQVELLNLN--DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130

Query: 195 SSNSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPEFIGKW-KKIQKLHIQGSSLEGPIP 252
             N  +  LP  +      L  L +S+NN   +I +   +    +Q L +  + L   + 
Sbjct: 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VD 187

Query: 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNID 312
             +S + SL    +S    S         + ++ L  +   I+  +        +L  + 
Sbjct: 188 --LSLIPSLFHANVSYNLLST--LAIP--IAVEELDASHNSIN-VVRG--PVNVELTILK 238

Query: 313 LSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN 356
           L  NNLT               + L+ N+L   +  + F   + 
Sbjct: 239 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQR 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 38/217 (17%)

Query: 156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLN 214
              L       ++ I+          +   L N + +   +++   +LPA  L     + 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 78

Query: 215 DLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL-----RISDL 269
            L ++D               +I+++             + +   ++  L      I  L
Sbjct: 79  LLNLNDL--------------QIEEID----------TYAFAYAHTIQKLYMGFNAIRYL 114

Query: 270 KGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTFEK 328
                 F  +    L  L+L +  +   +P  I  +  KL  + +S NNL      TF+ 
Sbjct: 115 --PPHVFQNVP--LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 329 LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
                 + L+ N+LT  V   +  S  + ++S N  +
Sbjct: 170 TTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLS 205

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 6e-20
 Identities = 54/271 (19%), Positives = 93/271 (34%), Gaps = 28/271 (10%)

Query: 108 LPTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNIT 163
           +    + L  +    L    +      S++  W  L+LV       +      K L  +T
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF--GQFPTLKLKSLKRLT 331

Query: 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRISDN 221
              N                  L +L+ L LS N  +  G         T+L  L +S N
Sbjct: 332 FTSNKGGNAFSEVD--------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISDLKGS---ESAFP 277
                +       ++++ L  Q S+L+     S+  +L +L  L IS           F 
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 278 KLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMY 336
            L   +L+ L +            I  ++  L  +DLS   L    PT F  L+    + 
Sbjct: 443 GL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 337 LTGNKLTGPVPKYIFNSNKN---VDISLNNF 364
           +  N+L   VP  IF+   +   + +  N +
Sbjct: 501 MASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 61/352 (17%), Positives = 108/352 (30%), Gaps = 68/352 (19%)

Query: 61  DPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQ 120
           +PC +                N+T  C               N    +P  L      K 
Sbjct: 1   EPCVEVVP-------------NITYQCME------------LNFY-KIPDNLP--FSTKN 32

Query: 121 LDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIP 180
           LDLS N              L  L                +   L+ L +       +I 
Sbjct: 33  LDLSFN-------------PLRHLG----------SYSFFSFPELQVLDLSRCEIQ-TIE 68

Query: 181 PD-IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239
               + L +L  LIL+ N          + L++L  L   + N +      IG  K +++
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 240 LHIQGSSL-EGPIPASISALTSLTDLRISD--LKG-SESAFPKLDKMNLK--TLILTKCL 293
           L++  + +    +P   S LT+L  L +S   ++    +    L +M L   +L L+   
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 294 IHGEIPDYIGDMTKLKNIDLSFNNLTGGIP-TTFEKLAKTNFMYLTGNKLTG-----PVP 347
           ++  I        +L  + L  N  +  +  T  + LA      L   +           
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 348 KYIFNSNKNVDISLNNFTWESSDPIECPRGSVNL--VESYSSPRNKLDKVHP 397
           K       N+ I      +      +       L  V S+S     +++V  
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 46/283 (16%), Positives = 85/283 (30%), Gaps = 29/283 (10%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNC---------LTGSFSPQWASLQLVELSVMGNRLS 152
            +    + T +  L  L+   L                S      +L + E  +      
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 153 G-PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLT 211
                 +   +T + + S+           D       Q L L +  F  + P    KL 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPTL--KLK 325

Query: 212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE--GPIPASISALTSLTDLRISD- 268
           +L  L  + N         +     ++ L +  + L   G    S    TSL  L +S  
Sbjct: 326 SLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 269 -LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI--GDMTKLKNIDLSFNNLTGGIPTT 325
            +    S F  L    L+ L      +  ++ ++     +  L  +D+S  +        
Sbjct: 384 GVITMSSNFLGL--EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 326 FEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV---DISLNNFT 365
           F  L+    + + GN         IF   +N+   D+S     
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPK-VLTNITTLKNLS 169
              LR L  LD+S      +F+  +  L  L  L + GN     F   + T +  L  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 170 IEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKI 227
           +        + P     L +LQ L ++SN     +P     +LT+L  + +  N +    
Sbjct: 477 LSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 228 P--EFIGKWKKIQKLHIQGS 245
           P  +++ +W        QGS
Sbjct: 535 PRIDYLSRWLNKNSQKEQGS 554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 103 NLTGTLPTE-LSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLT 160
           +       +  ++LR L  LDLS+  L       + SL  L  L++  N+L      +  
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 161 NITTLKNLSIEGNLFTGSIPPDIRKLIN 188
            +T+L+ + +  N +  S  P I  L  
Sbjct: 516 RLTSLQKIWLHTNPWDCS-CPRIDYLSR 542

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 54/276 (19%), Positives = 100/276 (36%), Gaps = 36/276 (13%)

Query: 109 PTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITT 164
             +   L++L  L L  N ++     +FSP     +L +L +  N L    P + ++   
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPL---RKLQKLYISKNHLVEIPPNLPSS--- 124

Query: 165 LKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFT-GELPAELTKLTNLNDLRISDNN 222
           L  L I  N     +P  +   L N+  + +  N                LN LRIS+  
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPA-SISALTSLTDL-----RISDLKGSESAF 276
            +  IP+     + + +LH+  + ++  I    +   + L  L     +I  +     + 
Sbjct: 184 LT-GIPK--DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMI--ENGSL 237

Query: 277 PKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT---- 332
             L    L+ L L    +   +P  + D+  L+ + L  NN+T      F  +       
Sbjct: 238 SFLP--TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 333 --NFMYLTGNKLT-GPVPKYIFNSNKN-VDISLNNF 364
             N + L  N +    V    F    + + I   N+
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 58/273 (21%), Positives = 96/273 (35%), Gaps = 32/273 (11%)

Query: 91  TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELS 145
            CH+  +      L   +P E+S       LDL  N ++      F      L  L  L 
Sbjct: 32  HCHLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFK----GLQHLYALV 84

Query: 146 VMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPA 205
           ++ N++S    K  + +  L+ L I  N     IPP++    +L +L +  N        
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKG 141

Query: 206 ELTKLTNLNDLRISDNNF-SGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL 264
             + L N+N + +  N   +           K+  L I  + L G IP       +L +L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNEL 198

Query: 265 -----RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNL 318
                +I  +        +     L  L L    I   I +     +  L+ + L  N L
Sbjct: 199 HLDHNKIQAI--ELEDLLRYS--KLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL 253

Query: 319 TGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
           +  +P     L     +YL  N +T  V    F
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDF 284

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 23/187 (12%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE--FIGKWK 235
           ++P +I    +   L L +N  +     +   L +L  L + +N  S KI E  F    +
Sbjct: 47  AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSP-LR 102

Query: 236 KIQKLHIQGSSLEGPIPASISALTSLTDLR-----ISDLKGSESAFPKLDKMNLKTLILT 290
           K+QKL+I  + L   IP   +  +SL +LR     I  +   +  F  L   N+  + + 
Sbjct: 103 KLQKLYISKNHLVE-IPP--NLPSSLVELRIHDNRIRKV--PKGVFSGLR--NMNCIEMG 155

Query: 291 K-CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY 349
              L +        D  KL  + +S   LTG      E L   N ++L  NK+   +   
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL---NELHLDHNKIQA-IELE 211

Query: 350 IFNSNKN 356
                  
Sbjct: 212 DLLRYSK 218

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 36/291 (12%)

Query: 81  SNVTCDCSSA---------TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT-- 129
            N  C  SS          T  V ++ L    +T    ++L +   L+ L L+ N +   
Sbjct: 32  RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 130 --GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI--RK 185
              SFS       L  L +  N LS         +++L  L++ GN +  ++        
Sbjct: 92  EEDSFSSLG---SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 186 LINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPE--FIGKWKKIQKLHI 242
           L  LQ L + +     ++  +    LT L +L I  ++                +  L +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQ-NVSHLIL 205

Query: 243 QGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKL---------DKMNLKTLILTKCL 293
                   +   +   +S+  L + D       F +L          K   + + +T   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 294 IHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT-TFEKLAKTNFMYLTGNKLT 343
           +  ++   +  ++ L  ++ S N L   +P   F++L     ++L  N   
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 41/211 (19%)

Query: 159 LTNI-----TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLT 211
           L +I       +K+L +  N  T  I     ++ +NLQ L+L+SN     +  +  + L 
Sbjct: 43  LNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100

Query: 212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--L 269
           +L  L +S N               +  L            +    L+SLT L +     
Sbjct: 101 SLEHLDLSYN--------------YLSNLS----------SSWFKPLSSLTFLNLLGNPY 136

Query: 270 K--GSESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTF 326
           K  G  S F  L    L+ L +       +I       +T L+ +++  ++L    P + 
Sbjct: 137 KTLGETSLFSHL--TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 327 EKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV 357
           + +   + + L   +    + +   +   +V
Sbjct: 195 KSIQNVSHLILHMKQHIL-LLEIFVDVTSSV 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 56/281 (19%), Positives = 99/281 (35%), Gaps = 56/281 (19%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASL- 139
           C CS            ++ LT ++PT +       +L+L  N L     G F      L 
Sbjct: 5   CSCSGTEIR-----CNSKGLT-SVPTGIPS--SATRLELESNKLQSLPHGVFD----KLT 52

Query: 140 QLVELSVMGNRLS--GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN 197
           QL +LS+  N LS  G   +     T+LK L +  N    ++  +   L  L+ L    +
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111

Query: 198 SFTGELPAE--LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI 255
           +   ++        L NL  L IS  +                          G      
Sbjct: 112 NLK-QMSEFSVFLSLRNLIYLDISHTHTR----------------VAFNGIFNG------ 148

Query: 256 SALTSLTDLRISDLKGSES----AFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKN 310
             L+SL  L+++     E+     F +L   NL  L L++C +  ++       ++ L+ 
Sbjct: 149 --LSSLEVLKMAGNSFQENFLPDIFTELR--NLTFLDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 311 IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
           +++S NN        ++ L     +  + N +     K   
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQW-ASL-QLVELSVMGNRLSGPFPKVLTNITT 164
           T+ +    L  L+ LD   + L          SL  L+ L +        F  +   +++
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 165 LKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNN 222
           L+ L + GN F  +  PDI  +L NL  L LS      +L       L++L  L +S NN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNN 210

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI--SALTSLTDLRISD 268
           F             +Q L    + +             +SL  L ++ 
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQ 257

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 48/248 (19%), Positives = 79/248 (31%), Gaps = 39/248 (15%)

Query: 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASL---QLVELSVMGNRLSGPFPKVLT----NIT 163
            +  +  L++L L    +TG+  P         L  L++     +     +         
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT----KLTNLNDLRIS 219
            LK LSI            +R    L  L LS N   GE          K   L  L + 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS--DLKGSESAFP 277
           +                         +  G   A  +A   L  L +S   L+ +  A  
Sbjct: 210 NAGM---------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 278 KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYL 337
                 L +L L+   +  ++P  +    KL  +DLS+N L    P + ++L +   + L
Sbjct: 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNP-SPDELPQVGNLSL 303

Query: 338 TGNKLTGP 345
            GN     
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 49/296 (16%), Positives = 84/296 (28%), Gaps = 57/296 (19%)

Query: 86  DCSSATCHVVTIALKAQNLTGTLPTELSK-LRYLKQLDLSRNCLTGSFSPQWA--SLQLV 142
            CS            A N  G    EL    R L+ L    +             SL L 
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 143 ELSVMGNRLSGPFPK---VLTNITTLKNLSIEGNLFTGSIPPDIRKLI--NLQKLILSSN 197
            L+V   R+          +  I+ L+ L++E    TG+ PP + +    +L  L L + 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 198 SFTGELPAELTKL-----TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252
           S+     A L +L       L  L I+  +      E +  +  +  L +  +   G   
Sbjct: 132 SWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNID 312
              +                   FP L  + L+   +      G          +L+ +D
Sbjct: 191 LISALC--------------PLKFPTLQVLALRNAGMET--PSGVCSALAAARVQLQGLD 234

Query: 313 LSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV---DISLNNFT 365
           LS N+L                                 +    +   ++S     
Sbjct: 235 LSHNSL------------------------RDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 27/246 (10%), Positives = 63/246 (25%), Gaps = 51/246 (20%)

Query: 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL---TNLNDLRISDNNFS 224
           L             DI K ++L++L + +      +     ++   + L +L + +   +
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNL 284
           G  P  + +                           L  L + ++               
Sbjct: 109 GTAPPPLLEAT----------------------GPDLNILNLRNVS-------------- 132

Query: 285 KTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344
                T+     E+  ++     LK + ++  +               + + L+ N   G
Sbjct: 133 ---WATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 345 PVP------KYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPC 398
                       F + + + +        S          V L     S  N L      
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS-HNSLRDAAGA 246

Query: 399 LRQNFP 404
              ++P
Sbjct: 247 PSCDWP 252

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 41/261 (15%), Positives = 91/261 (34%), Gaps = 25/261 (9%)

Query: 107 TLPTE-LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
           +L +     L  LK L+L  N        S  P   +LQ + +  +    S         
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRRIDFAG 146

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
           +T+L  L I+           ++ + ++  L L  +     L      L+++  L + D 
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 222 N---FSGKIPEFIGKWKKIQKLHIQGSSLE----GPIPASISALTSLTDLRISDLKGSE- 273
           N   F             ++KL  +GS L       +   +  +  L+++   D   +  
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 274 -----------SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI 322
                      S   K++ + ++ L + +  +  ++      + K+K I +  + +    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 323 PTTFEKLAKTNFMYLTGNKLT 343
            +  + L    F+ L+ N + 
Sbjct: 327 CSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 29/276 (10%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS---------LQLVELSVMGNRLSGPFPK 157
            L   + +L  ++  D + N L      +            + +  L +    L      
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGEL---PAELTKLTNL 213
           V + +  +K +++E +     +P    + L +L+ L LS N    E     A      +L
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 214 NDLRISDNNFS--GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG 271
             L +S N+     K  E +   K +  L I  ++   P+P S      +  L +S    
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331
                       L+ L ++   +          + +L+ + +S N L      +      
Sbjct: 423 RV--VKTCIPQTLEVLDVSNNNL-DSFSL---FLPRLQELYISRNKLKTLPDASL--FPV 474

Query: 332 TNFMYLTGNKLTGPVPKYIFNSNKN---VDISLNNF 364
              M ++ N+L   VP  IF+   +   + +  N +
Sbjct: 475 LLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 50/299 (16%), Positives = 112/299 (37%), Gaps = 29/299 (9%)

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRL 151
            +  + +KA +L       L  +R +  L L  +            L  +  L +    L
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 152 SGPFP---KVLTNITTLKNLSIEGNLFT----GSIPPDIRKLINLQKLILSSNSFTG--- 201
           +        V    + +K L+  G++ T      +   +R ++ L ++     +  G   
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 202 ------ELPAELTKL--TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPA 253
                 ++ +EL K+    +  L I        +       +K++++ ++ S +     +
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 254 SISALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTKCLIH--GEIPDYIGDMT 306
               L SL  L      + +     SA  K    +L+TL+L++  +    +  + +  + 
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
            L ++D+S N     +P + +   K  F+ L+   +   V   I  + + +D+S NN  
Sbjct: 388 NLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 51/341 (14%), Positives = 105/341 (30%), Gaps = 77/341 (22%)

Query: 80  ESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL 139
           +++  CD  S            ++ T ++P+ L+    +K LDLS N +T         +
Sbjct: 5   DASGVCDGRS------------RSFT-SIPSGLT--AAMKSLDLSFNKIT--------YI 41

Query: 140 QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNS 198
                              L     L+ L ++ +    +I  D    L +L+ L LS N 
Sbjct: 42  G---------------HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL 258
            +    +    L++L  L +  N +                           + +    L
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQ-----------------------TLGVTSLFPNL 122

Query: 259 TSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLS 314
           T+L  LRI +++         F  L   +L  L +    +       +  +  + ++ L 
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 315 FNNLTGGIPTTFEKLAKTNFMYLTGNKLTG-----PVPKYIFNSNKNVDISLNNFTWESS 369
            +     +    + L+   ++ L    L            + +  K +    +  T ES 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 370 DPI---ECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSA 407
           + +         ++ VE      N L   +P          
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 19/173 (10%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLT------GSFSPQWASLQLVELSVMGNRLSGPF 155
                           L+ L LS+N L               +L  +++S   N    P 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDIS--RNTFH-PM 402

Query: 156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLND 215
           P        ++ L++        +   I     L+ L +S+N+        L +L  L  
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQELY- 457

Query: 216 LRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
             IS N     +P+    +  +  + I  + L+         LTSL  + +  
Sbjct: 458 --ISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 10/146 (6%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
           +N    +P        ++ L+LS   +    +    +L+++++S   N L   F   L  
Sbjct: 396 RNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS--NNNLDS-FSLFLPR 452

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
              L+ L I  N    ++P        L  + +S N           +LT+L  + +  N
Sbjct: 453 ---LQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 222 NFSG--KIPEFIGKWKKIQKLHIQGS 245
            +       +++ +W        QGS
Sbjct: 508 PWDCSCPRIDYLSRWLNKNSQKEQGS 533

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 25/280 (8%)

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS 152
           + + IA    N+T T+    + L  +  L      +T +         L+ L +  N+++
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQIT 76

Query: 153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
              P  L N+T +  L + GN    ++   I  L +++ L L+S   T   P  L  L+N
Sbjct: 77  DLAP--LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272
           L  L +  N  +  I   +     +Q L I  + +       ++ L +L+ L       +
Sbjct: 131 LQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-----DLTPLANLSKLTTLKADDN 183

Query: 273 E-SAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA 330
           + S    L  + NL  + L    I    P  + + + L  + L+   +T         L 
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 331 KTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSD 370
             N +           P  I +   N   +  N TW  + 
Sbjct: 242 VPNVVKGPSGAPI--APATISD---NGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 179 IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ 238
           I PD   L N  K+    ++ T  +      L  +  L       +  I E +     + 
Sbjct: 12  IFPD-PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLI 66

Query: 239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE-SAFPKLDKM-NLKTLILTKCLIHG 296
            L ++ + +       ++ L +LT +   +L G+       +  + ++KTL LT   I  
Sbjct: 67  GLELKDNQIT-----DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
             P  +  ++ L+ + L  N +T   P     L    ++ +   +++
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 23/266 (8%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV 158
           L           +++    L  LD S N +T     Q   L    L+   N ++      
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLN--RLNCDTNNITKL---D 207

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
           L     L  L    N  T  I  D+  L  L     S N  T EL   ++ L+ L  L  
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EI--DVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHC 261

Query: 219 SDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK 278
              +   +I   +    ++     +G      +   ++  T L  L       +E    +
Sbjct: 262 IQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQ 316

Query: 279 LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLT 338
                L  L L    +  E+   +   TKLK++     ++      +  K+   N  +  
Sbjct: 317 N--PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEA 369

Query: 339 GNKLTGPVPKYIFNSNKNVDISLNNF 364
             +      + + N++  + +S +  
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.4 bits (204), Expect = 8e-17
 Identities = 47/263 (17%), Positives = 91/263 (34%), Gaps = 24/263 (9%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
            +  T      +L  L  LD   + +T   +       L +L    N ++      L+  
Sbjct: 29  EMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNITT-LD--LSQN 84

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
           T L  L+ + N  T ++   +  L  L  L   +N  T +L   +++   L  L  + N 
Sbjct: 85  TNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNT 138

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM 282
            + +I   +    ++ +L    +     +   ++  T LT L  S  K +E    +    
Sbjct: 139 LT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNK-- 191

Query: 283 NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
            L  L      I  ++   +    +L  +D S N LT  I      L +  +   + N L
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL 245

Query: 343 TGPVPKYIFNSNKNVDISLNNFT 365
           T  +     +    +     +  
Sbjct: 246 T-ELDVSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 44/261 (16%), Positives = 81/261 (31%), Gaps = 26/261 (9%)

Query: 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
           ++S+ + L +L+   N +T           QL  L    N+L+      +T +T L    
Sbjct: 186 DVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE 229
              N  T  +   +  L  L  L         E+   LT  T L   +        ++  
Sbjct: 240 CSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD- 292

Query: 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFPKLDKMNLKTL 287
            +    ++  L  Q + +   +   +S    L  L +++  L    +         LK+L
Sbjct: 293 -VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL----TELDVSHNTKLKSL 344

Query: 288 ILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVP 347
                 I  +    +G +  L N   +          T    + T  +        G   
Sbjct: 345 SCVNAHI-QDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

Query: 348 KYIFNSNKNVDISLNNFTWES 368
                     D + N  TWE+
Sbjct: 403 NIEPGDGGVYDQATNTITWEN 423

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 165 LKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS 224
             +          +      +L  L  L   ++S T ++   + KLT L  L  + NN +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT 77

Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNL 284
             +   + +   +  L    + L   +   ++ LT LT L     K ++    +     L
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLDVSQNP--LL 129

Query: 285 KTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
             L   +  +  EI   +   T+L  +D   N     +        +   +  + NK+T
Sbjct: 130 TYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 13/178 (7%)

Query: 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247
           N    + ++            +L  L  L   +++ +  +   I K   + KL    +++
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNI 76

Query: 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTK 307
              +   +S  T+LT L     K +      L    L  L      +  ++   +     
Sbjct: 77  TT-LD--LSQNTNLTYLACDSNKLTNLDVTPLT--KLTYLNCDTNKLT-KLD--VSQNPL 128

Query: 308 LKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
           L  ++ + N LT           +   +    NK    +          +D S N  T
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 42/261 (16%), Positives = 91/261 (34%), Gaps = 19/261 (7%)

Query: 117 YLKQLDLSRNCLTGSFSPQWAS----LQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172
            L  ++ + N         W +      +  + + G      F    T++  L    +  
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG 232
           ++F            N+     + +          +K++    L  S+N  +  + E  G
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 233 KWKKIQKLHIQGSSLE--GPIPASISALTSLTDLRISD----LKGSESAFPKLDKMNLKT 286
              +++ L +Q + L+    I    + + SL  L IS         +         +L +
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK--SLLS 403

Query: 287 LILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPV 346
           L ++  ++   I   +    ++K +DL  N +   IP    KL     + +  N+L   V
Sbjct: 404 LNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V 459

Query: 347 PKYIFNSNKN---VDISLNNF 364
           P  IF+   +   + +  N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 5e-12
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 7/170 (4%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLS--GPFPKVL 159
                     SK+     LD S N LT +       L +L  L +  N+L       ++ 
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 160 TNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRI 218
           T + +L+ L I  N  +            +L  L +SSN  T  +   L     +  L +
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428

Query: 219 SDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
             N     IP+ + K + +Q+L++  + L+         LTSL  + +  
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 44/303 (14%), Positives = 90/303 (29%), Gaps = 32/303 (10%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKV 158
            ++    +++  L  L+ L +S N +       F       +L  L +  N+L       
Sbjct: 32  YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ---ELEYLDLSHNKLVKISCHP 88

Query: 159 LTNITTLKNLSIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTGELPAELTKLTNLNDL 216
             N   LK+L +  N F  ++P       +  L+ L LS+          +  L     L
Sbjct: 89  TVN---LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA- 275
            +    +  K      +    + LHI   + +        ++ ++ +L +S++K      
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 276 ---------FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNI-DLSFNNLT------ 319
                            L  L L            I  +     +   S +N+       
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 320 -GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGS 378
                 +   L   +   +  +    P   YI+    N++I     +      + CP   
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 379 VNL 381
              
Sbjct: 324 SPF 326

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 7/209 (3%)

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDN 221
                L+I  N  +     DI  L  L+ LI+S N     L          L  L +S N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDLRISDLKGSESAFPKLD 280
               KI         ++ L +  ++ +  PI      ++ L  L +S     +S+   + 
Sbjct: 80  KLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 281 KMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
            +N+  ++L     +GE  D    +       L     T         ++      L  +
Sbjct: 137 HLNISKVLLVLGETYGEKED-PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 341 KLTGPVPKYIFNSNKNVDISLNNFTWESS 369
            +   +     +   ++   L      S+
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 34/243 (13%), Positives = 68/243 (27%), Gaps = 27/243 (11%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
            +P D+        L +S N  +    +++  L+ L  L IS N             +++
Sbjct: 14  HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE 297
           + L +  + L      S     +L  L +S                   L + K      
Sbjct: 72  EYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA-------------FDALPICK------ 109

Query: 298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV 357
                G+M++LK + LS  +L          L  +  + + G                  
Sbjct: 110 ---EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

Query: 358 DISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLH 417
            + +   T +    I             S+ +  L+        +       +     L 
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226

Query: 418 INC 420
           +N 
Sbjct: 227 LNN 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 54/286 (18%), Positives = 102/286 (35%), Gaps = 50/286 (17%)

Query: 91  TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELS 145
            CH+  +      L   +P +L        LDL  N +T    G F     +L  L  L 
Sbjct: 30  QCHLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFK----NLKNLHTLI 82

Query: 146 VMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPA 205
           ++ N++S   P     +  L+ L +  N     +P  +     LQ+L +  N  T    +
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKS 139

Query: 206 ELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265
               L  +  + +  N               ++   I+  + +G        +  L+ +R
Sbjct: 140 VFNGLNQMIVVELGTN--------------PLKSSGIENGAFQG--------MKKLSYIR 177

Query: 266 ISD--LKG-SESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGG 321
           I+D  +    +   P     +L  L L    I  ++       +  L  + LSFN+++  
Sbjct: 178 IADTNITTIPQGLPP-----SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 322 IPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSN--KNVDISLNNFT 365
              +         ++L  NKL   VP  + +    + V +  NN +
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 33/249 (13%)

Query: 112 LSKLRYLKQLDLSRNCLT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
            + L  L++L LS+N L                L EL V  N ++     V   +  +  
Sbjct: 96  FAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 168 LSIEGN-LFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG 225
           + +  N L +  I     + +  L  + ++  + T  +P  L    +L +L +  N  + 
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT- 205

Query: 226 KIPE--FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFPKLDK 281
           K+      G    + KL +  +S+      S++    L +L +++  L            
Sbjct: 206 KVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-- 262

Query: 282 MNLKTLILTKCLIHGEIPD-------YIGDMTKLKNIDLSFNNLTGGI--PTTFEKLAKT 332
             ++ + L    I   I         Y         + L  N +      P+TF  +   
Sbjct: 263 KYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 333 NFMYLTGNK 341
             + L   K
Sbjct: 322 AAVQLGNYK 330

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 7e-17
 Identities = 55/274 (20%), Positives = 84/274 (30%), Gaps = 60/274 (21%)

Query: 84  TCDCSSAT--CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWA 137
                + T  C          N    +P  L      K LDLS N L      SF     
Sbjct: 4   VEVVPNITYQCM-------ELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFF---- 49

Query: 138 SL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILS 195
           S  +L  L +    +         +++ L  L + GN    S+       L +LQKL+  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 196 SNSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPAS 254
             +    L       L  L +L ++ N               IQ            +P  
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHN--------------LIQSF---------KLPEY 144

Query: 255 ISALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTKCLIH---GEIPDYIGDMT 306
            S LT+L  L     +I  +    +    L    +  L L+  L       I        
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI--YCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
           +LK + L  N L       F++L     ++L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 63/218 (28%)

Query: 160 TNI-TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLTNLNDL 216
            N+  + KNL +  N     +          LQ L LS       +       L++L+ L
Sbjct: 24  DNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL 81

Query: 217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAF 276
            ++ N                                    + SL          +  AF
Sbjct: 82  ILTGNP-----------------------------------IQSL----------ALGAF 96

Query: 277 PKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTG-GIPTTFEKLAKTNF 334
             L   +L+ L+  +  +   + ++  G +  LK ++++ N +    +P  F  L     
Sbjct: 97  SGL--SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 335 MYLTGNKLTGPVPKYIFNS-------NKNVDISLNNFT 365
           + L+ NK+   +              N ++D+SLN   
Sbjct: 154 LDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 2e-16
 Identities = 44/257 (17%), Positives = 87/257 (33%), Gaps = 18/257 (7%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171
                   + +L +  +T     Q     + ++    + +       +  +  +  L + 
Sbjct: 17  DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 73

Query: 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI 231
           GN  T  I P +  L NL  L L  N    +L + L  L  L  L +  N  S  I   +
Sbjct: 74  GNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGL 127

Query: 232 GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE-SAFPKLDKM-NLKTLIL 289
               +++ L++  + +       I+ L+ LT L    L+ ++ S    L  +  L+ L L
Sbjct: 128 VHLPQLESLYLGNNKIT-----DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182

Query: 290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY 349
           +K  I       +  +  L  ++L               L   N +  T   L  P    
Sbjct: 183 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 350 IFNSNKNVDISLNNFTW 366
                +  ++  +   +
Sbjct: 241 DDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 47/300 (15%), Positives = 103/300 (34%), Gaps = 19/300 (6%)

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS 152
             +   LK +++T  +    ++L  + Q+  + + +  S         + +L + GN+L+
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLT 78

Query: 153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN 212
              P  LTN+  L  L ++ N     +   ++ L  L+ L L  N  + ++   L  L  
Sbjct: 79  DIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQ 132

Query: 213 LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272
           L  L + +N  +      + +  K+  L ++ + +       I  L  LT L+   L  +
Sbjct: 133 LESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKN 185

Query: 273 E-SAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA 330
             S    L  + NL  L L       +  ++  ++     +  +  +L        +   
Sbjct: 186 HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGD 244

Query: 331 KTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRN 390
                             +IF     +  +   F    + P++        V+       
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTK 304

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 6e-08
 Identities = 44/275 (16%), Positives = 83/275 (30%), Gaps = 17/275 (6%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171
           L  L  L+ L L  N +T   +      +L  LS+  N++S   P  L  +T L+NL + 
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183

Query: 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI 231
            N  +  +   +  L NL  L L S     +     + L   N ++ +D +     PE I
Sbjct: 184 KNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEII 239

Query: 232 GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTK 291
                 +K +++    E     S         + I   K             + T+    
Sbjct: 240 SDDGDYEKPNVKWHLPEFTNEVS---FIFYQPVTIGKAKARFHGRVTQPLKEVYTVS--- 293

Query: 292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
                ++   +          ++           F+            N  T  +    F
Sbjct: 294 ----YDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDF 349

Query: 352 NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYS 386
                        T   +  ++  RG+  + +   
Sbjct: 350 TLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPR 384

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 6/166 (3%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162
             + T     +++  L  + L+   +T   +    +  + +L++     +   P  ++ +
Sbjct: 31  GQSSTANITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNP--ISGL 87

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
           + L+ L I G   T    P++  L +L  L +S ++    +  ++  L  +N + +S N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
               I   +    +++ L+IQ   +       I     L  L    
Sbjct: 148 AITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
             + +L  +++     T  +   I    N++ L +++   T   P  ++ L+NL  LRI 
Sbjct: 41  AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDL------RISDLKGSE 273
             + +      +     +  L I  S+ +  I   I+ L  +  +       I+D+    
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-- 154

Query: 274 SAFPKLDKM-NLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320
                L  +  LK+L +    +H      I D  KL  +      + G
Sbjct: 155 -----LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 181 PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240
           PD          +L  +S      A++  LT +    +++ N +                
Sbjct: 18  PD-STFKAYLNGLLGQSSTANITEAQMNSLTYIT---LANINVT---------------- 57

Query: 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSE-SAFPKLDKMNLKTLILTKCLIHGEIP 299
                 L G     I    ++ DL I+++  +  +    L   NL+ L +    +  +  
Sbjct: 58  -----DLTG-----IEYAHNIKDLTINNIHATNYNPISGLS--NLERLRIMGKDVTSDKI 105

Query: 300 DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
             +  +T L  +D+S +     I T    L K N + L+ N  
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 44/254 (17%), Positives = 88/254 (34%), Gaps = 18/254 (7%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171
                   + +L +  +T     Q     + ++    + +       +  +  +  L + 
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI 231
           GN  T  I P +  L NL  L L  N    +L + L  L  L  L +  N  S  I   +
Sbjct: 77  GNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGL 130

Query: 232 GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE-SAFPKLDKM-NLKTLIL 289
               +++ L++  + +       I+ L+ LT L    L+ ++ S    L  +  L+ L L
Sbjct: 131 VHLPQLESLYLGNNKIT-----DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY 349
           +K  I  ++   +  +  L  ++L               L   N +  T   L  P    
Sbjct: 186 SKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

Query: 350 IFNSNKNVDISLNN 363
                +  ++  + 
Sbjct: 244 DDGDYEKPNVKWHL 257

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 99  LKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV 158
           L    L       L     L QL+L R  LT           L  L +  N+L    P +
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQS-LPLL 95

Query: 159 LTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLTNLNDL 216
              +  L  L +  N  T S+P    R L  LQ+L L  N     LP  L T    L  L
Sbjct: 96  GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153

Query: 217 RISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
            +++NN + ++P  +    + +  L +Q +SL   IP        L    +  
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 17/195 (8%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
           ++PPD+    +   L LS N       A L   T L  L +     + K+    G    +
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVL 79

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTKC 292
             L +  + L+  +P     L +LT L     R++ L     A   L    L+ L L   
Sbjct: 80  GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL--PLGALRGLG--ELQELYLKGN 134

Query: 293 LIHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
            +   +P  +     KL+ + L+ NNLT         L   + + L  N L   +PK  F
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192

Query: 352 NSNKNVDISLNNFTW 366
            S+      L+   W
Sbjct: 193 GSHLLPFAFLHGNPW 207

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 4e-14
 Identities = 35/249 (14%), Positives = 75/249 (30%), Gaps = 29/249 (11%)

Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSF 199
           +  + +  N ++       + +  L+ L +E       I  +  R L +L  L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 200 TGELPAE-LTKLTNLNDLRISDNNF-SGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASI- 255
             +L       L NL  L ++  N     +          ++ L ++ ++++   PAS  
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 256 SALTSLTDL-----RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKN 310
             +     L     ++  +   E         +   L L                + +  
Sbjct: 151 LNMRRFHVLDLTFNKVKSIC--EEDLLNFQGKHFTLLRL----------------SSITL 192

Query: 311 IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSD 370
            D++   L         K      + L+GN     + K  F++     I     +   + 
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 371 PIECPRGSV 379
                  + 
Sbjct: 253 GSSFGHTNF 261

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 51/293 (17%), Positives = 99/293 (33%), Gaps = 54/293 (18%)

Query: 114 KLRYLKQLDLSRNCLT-----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL--- 165
            L  L+ L L  N +        F        +++L+   N++     + L N       
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLT--FNKVKSICEEDLLNFQGKHFT 183

Query: 166 -------KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR- 217
                      +           +  K  ++  L LS N F   +            ++ 
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 218 ------------ISDNNFSGKIPE--FIG-KWKKIQKLHIQGSSLEGPIPASI-SALTSL 261
                           NF        F G +   ++   +  S +   +  S+ S  T L
Sbjct: 244 LILSNSYNMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDL 301

Query: 262 TDL-----RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSF 315
             L      I+ +   ++AF  L   +L  L L++  + G I   + + + KL+ +DLS+
Sbjct: 302 EQLTLAQNEINKI--DDNAFWGLT--HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSY 356

Query: 316 NNLTGGIPT-TFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN---VDISLNNF 364
           N++   +   +F  L     + L  N+L   VP  IF+   +   + +  N +
Sbjct: 357 NHIRA-LGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 39/272 (14%)

Query: 107 TLPTE-LSKLRYLKQLDLSRNCLTGSFSPQ--WASL-QLVELSVMGNRLSGPFPK-VLTN 161
            L T   + L  L+ L L++  L G+      +  L  L  L +  N +    P     N
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 162 ITTLKNLSIEGNLFTGSIPPDI-----------RKLINLQKLILSSNSFTGELPAELTKL 210
           +     L +  N    SI  +             +L ++    ++      E      K 
Sbjct: 153 MRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKL--------HIQGSSLEGPIPASISALT--- 259
           T++  L +S N F   + +         K+        +  GSS            T   
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 260 -SLTDLRISDLKG------SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNI 311
              + ++  DL         +S F      +L+ L L +  I+ +I D     +T L  +
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 312 DLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
           +LS N L       FE L K   + L+ N + 
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 35/258 (13%), Positives = 78/258 (30%), Gaps = 46/258 (17%)

Query: 163 TTLKNLSIEGNLFTGSIPP-DIRKLINLQKLILSSNSFTGELPAEL-TKLTNLNDLRISD 220
             +  + +  N     +      +L +LQ L +   +    +       L++L  L++  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGS---ESA 275
           N              +  +L             + + L +L  L ++   L G+    + 
Sbjct: 89  N--------------QFLQLE----------TGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

Query: 276 FPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFEKLAKTNF 334
           F  L   +L+ L+L    I    P      M +   +DL+FN +              +F
Sbjct: 125 FKPLT--SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182

Query: 335 --MYLTGNKLT-------GPVPKYIFNSNKNVDI-SLNNFTWESSDPIECPRGSVNLVES 384
             + L+   L        G         N ++    L+   ++ S   +    ++   + 
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-MAKRFFDAIAGTKI 241

Query: 385 YSSPRNKLDKVHPCLRQN 402
            S   +    +       
Sbjct: 242 QSLILSNSYNMGSSFGHT 259

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 43/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMG-----------NRLSGPFPKVLTN 161
             +R    LDL+ N +         + Q    +++              L          
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI-------------LSSNSFTGELPAELT 208
            T++  L + GN F  S+       I   K+                  +F         
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 209 KL--TNLNDLRISDNNFSGKIPEFIGKW-KKIQKLHIQGSSLEGPIPASI-SALTSLTDL 264
            L  + +    +S +     + + +      +++L +  + +   I  +    LT L  L
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 265 RISD--LKG-SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFNNLTG 320
            +S   L       F  LD   L+ L L+   I   + D     +  LK + L  N L  
Sbjct: 329 NLSQNFLGSIDSRMFENLD--KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS 385

Query: 321 GIPTTFEKLAKTNFMYLTGN 340
                F++L     ++L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFP 156
             L  ++ +  + L  L    L++N +      +F      L  L++L++  N L     
Sbjct: 288 FALLKSVFSHFTDLEQL---TLAQNEINKIDDNAF----WGLTHLLKLNLSQNFLGSIDS 340

Query: 157 KVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLN 214
           ++  N+  L+ L +  N    ++       L NL++L L +N     +P     +LT+L 
Sbjct: 341 RMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398

Query: 215 DLRISDNNF 223
            + +  N +
Sbjct: 399 KIWLHTNPW 407

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 64/272 (23%), Positives = 99/272 (36%), Gaps = 38/272 (13%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASL- 139
           C CS+          +   +T  +P++L   R   +L      L     G+FS       
Sbjct: 7   CHCSNRVFL-----CQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFS----GFG 54

Query: 140 QLVELSVMGNR-LSGPFPKVLTNITTLKNLSIE-GNLFTGSIPPDI-RKLINLQKLILSS 196
            L ++ +  N  L      V +N+  L  + IE  N     I P+  + L NLQ L++S+
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISN 113

Query: 197 NSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPE--FIGKWKKIQKLHIQGSSLEGPIPA 253
                 LP            L I DN     I    F+G   +   L +  + ++  I  
Sbjct: 114 TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHN 171

Query: 254 SISALTSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGEIPDYI-GDMTKL 308
           S    T L +L +SD           F          L +++  IH  +P Y   ++ KL
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGAS--GPVILDISRTRIH-SLPSYGLENLKKL 228

Query: 309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
           +    S  NL   +P T EKL       LT  
Sbjct: 229 RA--RSTYNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 37/213 (17%)

Query: 163 TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISD 220
                L          I         +L+K+ +S N     + A+  + L  L+++RI  
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKG-SESAFP 277
            N              +  ++          P +   L +L  L IS+  +K   +    
Sbjct: 89  AN-------------NLLYIN----------PEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 278 KLDKMNLKTLILTKCLIHGEIPDYI--GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335
               +    L +   +    I      G   +   + L+ N +     + F         
Sbjct: 126 HS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 336 YLTGNKLTGPVPKYIF---NSNKNVDISLNNFT 365
               N L   +P  +F   +    +DIS     
Sbjct: 184 LSDNNNLEE-LPNDVFHGASGPVILDISRTRIH 215

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 47/302 (15%), Positives = 96/302 (31%), Gaps = 22/302 (7%)

Query: 55  DWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSK 114
             N  V+         +  +D+            +    ++ + L+    T     +L +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 115 L---RYLKQLDLSRNCLTGSFSPQWASLQLVELSVMG------NRLSGPFPKVLTNITTL 165
               R ++ L++    +T     +  +     L  +                + +    +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 166 K--NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF 223
               LSI    F   + P      +   L  + N FT  +    + L  L  L +  N  
Sbjct: 332 NIKMLSISDTPFIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 224 SGKIPEFIGKWKKIQKLHIQGSSL----EGPIPASISALTSLTDLRISDLKGSESAFPKL 279
                +     K +  L     SL          + +   S+  L +S    + S F  L
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 280 DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT-TFEKLAKTNFMYLT 338
               +K L L    I   IP  +  +  L+ ++++ N L   +P   F++L    +++L 
Sbjct: 449 -PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505

Query: 339 GN 340
            N
Sbjct: 506 DN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 40/245 (16%), Positives = 88/245 (35%), Gaps = 14/245 (5%)

Query: 118 LKQLDLSRNCLTGSFSPQWAS----LQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173
           L+ ++ +  C    F   W      L +  L++        F    T + +L    ++  
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGK 233
           +F  S          +   +LS +             ++   L  + N F+  + +    
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 234 WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG---SESAFPKL--DKMNLKTLI 288
            K++Q L +Q + L+           +++ L   D+     +  A+ +      ++  L 
Sbjct: 376 LKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 289 LTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK 348
           L+  ++ G +   +    K+K +DL  N +   IP     L     + +  N+L   VP 
Sbjct: 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490

Query: 349 YIFNS 353
            +F+ 
Sbjct: 491 GVFDR 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 10/191 (5%)

Query: 158 VLTNI-TTLKNLSIEGNLFTGSIPP-DIRKLINLQKLILSSNSFTGELPAEL-TKLTNLN 214
           V  ++    K LS+  N  +  +   DI  L  L+ L LS N     L   +     +L 
Sbjct: 46  VPKDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLE 103

Query: 215 DLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDLRISDLKGSE 273
            L +S N     I         ++ L +  +  +  P+      LT LT L +S  K  +
Sbjct: 104 YLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 274 SAFPKLDKMNLKTLIL-TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332
                +  ++L  ++L                +     + L F+  +         +   
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 333 NFMYLTGNKLT 343
             + L+  KL 
Sbjct: 221 GHLQLSNIKLN 231

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 52/333 (15%), Positives = 107/333 (32%), Gaps = 39/333 (11%)

Query: 80  ESNVTCDCSSATCHVV--TIALKAQNL-------TGTLPTELSKLRYLKQLDLSRNCLT- 129
           E     D S+     V   +  + + L       +     ++S L  L+ L LS N +  
Sbjct: 31  ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90

Query: 130 ---GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPP--DIR 184
                F        L  L V  NRL       + +   L++L +  N F   +P   +  
Sbjct: 91  LDFHVFLFNQ---DLEYLDVSHNRLQNISCCPMAS---LRHLDLSFNDFD-VLPVCKEFG 143

Query: 185 KLINLQKLILSSNSFTGELPAELTKL-TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243
            L  L  L LS+  F       +  L  +   L +   +  G   E +        LH+ 
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLV 202

Query: 244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM------NLKTLILTKCLIHGE 297
                        ++ +L  L++S++K ++    +L             L +T   I   
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 298 IPDYIGDM-----TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPV----PK 348
               +          ++ +++    +T  I       ++T    L    +   V     +
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 349 YIFNSNKNVDISLNNFTWESSDPIECPRGSVNL 381
            +++    ++I + + +      + CP    + 
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 112 LSKLRYLKQLDLSRNCLT-GSFSP--QWASLQLVELSVMGNRLSGPFPKVLTNITTLKNL 168
              +  L+ LD+S N L   ++     WA   ++ L++  N L+G   + L     +K L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAE-SILVLNLSSNMLTGSVFRCLP--PKVKVL 455

Query: 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNF 223
            +  N    SIP D+  L  LQ+L ++SN     +P     +LT+L  + + DN +
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 652 ADKELRGLDL-QTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
             +E   + L Q   ++LR+++ A++NF   N +G GGFG VYK
Sbjct: 5   PAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYK 48

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 35/233 (15%)

Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSF 199
              L ++   L        +N+  +  + +  ++    +       L  +  + + +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 200 TGELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL 258
              +  + L +L  L  L I +                ++           P    + + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNT--------------GLKMF---------PDLTKVYST 129

Query: 259 TSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLS 314
                L I+D         +AF  L      TL L        +  Y  + TKL  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 315 FNNLTGGIPT-TFEKLAKT-NFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
            N     I    F  +    + + ++   +T  +P       K + I+ N +T
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLEHLKEL-IARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 43/195 (22%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
           S+PP      + Q L L        +P+   + L N++ + +S +               
Sbjct: 28  SLPP------STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV-------------T 67

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKC 292
           +Q+L             S   L+ +T + I + +        A  +L    LK L +   
Sbjct: 68  LQQLE----------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP--LLKFLGIFNT 115

Query: 293 LIHGEIPDY--IGDMTKLKNIDLSFNNLTGGIPT-TFEKLAK-TNFMYLTGNKLTGPVPK 348
            +    PD   +        ++++ N     IP   F+ L   T  + L  N  T  V  
Sbjct: 116 GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG 173

Query: 349 YIFNSNKNVDISLNN 363
           Y FN  K   + LN 
Sbjct: 174 YAFNGTKLDAVYLNK 188

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 40/216 (18%)

Query: 160 TNI-TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLTNLNDL 216
           +NI    K L ++ N  + S+P     +L  L+ L L+ N     LPA +  +L NL  L
Sbjct: 33  SNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90

Query: 217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISD--LKG-S 272
            ++DN              K+Q L           P  +   L +L +LR+    LK   
Sbjct: 91  WVTDN--------------KLQAL-----------PIGVFDQLVNLAELRLDRNQLKSLP 125

Query: 273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFEKLAK 331
              F  L    L  L L    +   +P  + D +T LK + L  N L       F+KL +
Sbjct: 126 PRVFDSL--TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 332 TNFMYLTGNKLTGPVPKYIFNSNKNV-DISLNNFTW 366
              + L  N+L   VP+  F+S + +  + L    W
Sbjct: 183 LKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 15/174 (8%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFPK 157
            L+        +L  L+ L L+ N L     G F      L  L  L V  N+L      
Sbjct: 48  KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK----ELKNLETLWVTDNKLQALPIG 103

Query: 158 VLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLTNLND 215
           V   +  L  L ++ N    S+PP +   L  L  L L  N     LP  +  KLT+L +
Sbjct: 104 VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161

Query: 216 LRISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
           LR+ +N    ++PE    K  +++ L +  + L+     +  +L  L  L++ +
Sbjct: 162 LRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 653 DKELRGLDLQTGLYTLRQIKAATNNFDP------ANKVGEGGFGSVYK 694
           +K L   D +   ++  ++K  TNNFD        NK+GEGGFG VYK
Sbjct: 2   NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 666 YTLRQIKAATNNFDPANKVGEGGFGSVYK 694
             L  ++ ATNNFD    +G G FG VYK
Sbjct: 29  VPLVDLEEATNNFDHKFLIGHGVFGKVYK 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 4e-10
 Identities = 87/572 (15%), Positives = 169/572 (29%), Gaps = 184/572 (32%)

Query: 35  KLH---AEEVKALKQIGRKLGKKDWNF--GVDPCSQKGNWELSSD---DKK---GFESNV 83
           K +    +    L+Q   +L         GV      G   ++ D     K     +  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVALDVCLSYKVQCKMDFKI 184

Query: 84  ------TCDCSSAT-------CHVVTIALKAQ-NLTGTLPTEL----SKLRYLKQLDLSR 125
                  C+             + +     ++ + +  +   +    ++LR L +     
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 126 NCLTGSFSPQWASLQLVELSVMGNRLSGPFP---KVLTNITTLKNLSIEGNLFTGSIPPD 182
           NCL            LV L+V   +    F    K+L  +TT +   +     T  +   
Sbjct: 245 NCL------------LVLLNVQNAKAWNAFNLSCKIL--LTT-RFKQV-----TDFLSAA 284

Query: 183 IRKLINLQKLILSSNSFT----------------GELPAELTKLTNLNDLRISDNNFSGK 226
               I+L      S + T                 +LP E+      N  R+S    +  
Sbjct: 285 TTTHISLDHH---SMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLS--IIAES 336

Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR--ISDLKGSESAFPKLDKMNL 284
           I + +  W   +  H+    L   I +S++ L    + R     L    S FP    +  
Sbjct: 337 IRDGLATWDNWK--HVNCDKLTTIIESSLNVLEP-AEYRKMFDRL----SVFPPSAHIPT 389

Query: 285 KTLILTKCLIHGEIPDYIGD--MTKLKN---IDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
             L     LI  ++        + KL     ++      T  IP+          +YL  
Sbjct: 390 ILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS----------IYL-- 433

Query: 340 NKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCL 399
            +L   +           + +L+                 ++V+ Y+ P+          
Sbjct: 434 -ELKVKLEN---------EYALHR----------------SIVDHYNIPK--------TF 459

Query: 400 RQNFPCSAPADQYHYTLHINCGGAKINTGHTKYEADMEARGASMF---Y----------- 445
             +       DQY Y+ HI         GH     +   R  ++F   +           
Sbjct: 460 DSDDLIPPYLDQYFYS-HI---------GHHLKNIEHPER-MTLFRMVFLDFRFLEQKIR 508

Query: 446 SSGQYWAFSSTGKFMDDDTDLDNY---IRTNTSTLSKVSAVDLELYRTARVSPLSLTYYG 502
                W  +++G  ++    L  Y   I  N     ++    +  +         L    
Sbjct: 509 HDSTAW--NASGSILNTLQQLKFYKPYICDNDPKYERLVN-AILDF---------LPKIE 556

Query: 503 LCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRI 534
             L    YT  L  A ++ ++++ F    K++
Sbjct: 557 ENLICSKYTDLLRIA-LMAEDEAIFEEAHKQV 587

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 20/259 (7%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
                L    + +L +  +T     Q     +   +   + +       +   T LK L 
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE 229
           +  N  +  + P ++ L  L++L ++ N            L+ L    + +N       +
Sbjct: 70  LSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD--TD 122

Query: 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE-SAFPKLDKM-NLKTL 287
            +   K ++ L I+ + L+     SI  L  L+ L + DL G+E +    L ++  +  +
Sbjct: 123 SLIHLKNLEILSIRNNKLK-----SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177

Query: 288 ILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG-PV 346
            LT      E   Y  ++     +           P             +          
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYTDE 235

Query: 347 PKYIFNSNKNVDISLNNFT 365
             Y F+   NV  +   F 
Sbjct: 236 VSYKFSEYINVGETEAIFD 254

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 112 LSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLK 166
            ++L  L  L LS N L      +F      +  L  L +  N L      + +++  L+
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 167 NLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAE----LTKLTNLNDLRISDN 221
            L +  N     +  +    +  LQKL LS N  +   P E      KL  L  L +S N
Sbjct: 116 VLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

Query: 222 NFSGKIPEFIGKWKKIQKLHIQ 243
                    + K     K  + 
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 43/198 (21%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAE--LTKLTNLNDLRISDNNFSGKIPEFIGKWK 235
           ++P  +        L LS N+ +  L AE   T+LTNL+ L +S N              
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN-------------- 74

Query: 236 KIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKG-SESAFPKLDKMNLKTLILTKC 292
            +  +             +   + +L  L +S   L    E  F  L    L+ L+L   
Sbjct: 75  HLNFIS----------SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL--QALEVLLLYNN 122

Query: 293 LIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTF---EKLAKTNFMYLTGNKLTGPVPK 348
            I   +      DM +L+ + LS N ++           KL K   + L+ NKL   +P 
Sbjct: 123 HIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPL 180

Query: 349 YIFN---SNKNVDISLNN 363
                  +     + L+N
Sbjct: 181 TDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 16/123 (13%)

Query: 112 LSKLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLK 166
              +  L+ LDLS N L       FS     L  L  L +  N +         ++  L+
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 167 NLSIEGNLFTGSIPPDI----RKLINLQKLILSSNSFTGELPAELTKLTNL--NDLRISD 220
            L +  N  +   P ++     KL  L  L LSSN        +L KL     N L + +
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 221 NNF 223
           N  
Sbjct: 199 NPL 201

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 25/160 (15%)

Query: 85  CDCSSAT--CH--------------VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCL 128
           C CS+    C               +  I L+   +    P   S  + L+++DLS N +
Sbjct: 9   CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68

Query: 129 T----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI- 183
           +     +F        L  L + GN+++     +   + +L+ L +  N     +  D  
Sbjct: 69  SELAPDAFQGL---RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

Query: 184 RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF 223
           + L NL  L L  N          + L  +  + ++ N F
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/247 (16%), Positives = 82/247 (33%), Gaps = 62/247 (25%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
            IP ++     + ++ L  N+     P   +    L  + +S+N              +I
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN--------------QI 68

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE 297
            +L                               +  AF  L   +L +L+L    I  E
Sbjct: 69  SEL-------------------------------APDAFQGL--RSLNSLVLYGNKIT-E 94

Query: 298 IPDYIGD-MTKLKNIDLSFNNLTGGIPT-TFEKLAKTNFMYLTGNKLTGPVPKYIFNSNK 355
           +P  + + +  L+ + L+ N +   +    F+ L   N + L  NKL   + K  F+  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLR 152

Query: 356 NV-DISLNNFTWES-------SDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSA 407
            +  + L    +         +D +       +     S  R    ++     + F CSA
Sbjct: 153 AIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA 212

Query: 408 PADQYHY 414
            A  +H+
Sbjct: 213 AAHHHHH 219

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 41/193 (21%), Positives = 60/193 (31%), Gaps = 60/193 (31%)

Query: 157 KVLTNI-----TTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TK 209
           K LT I      T+  + +E N     IPP        L+++ LS+N  + EL  +    
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG 78

Query: 210 LTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISD 268
           L +LN L +  N              KI +L           P S+   L SL  L    
Sbjct: 79  LRSLNSLVLYGN--------------KITEL-----------PKSLFEGLFSLQLL---- 109

Query: 269 LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFE 327
                     L+   +             +       +  L  + L  N L      TF 
Sbjct: 110 ---------LLNANKINC-----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 328 KLAKTNFMYLTGN 340
            L     M+L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 9/159 (5%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
             +  +R     DL    L  +   +     +  L +    L+      L  +  + +L 
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLD 469

Query: 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIP 228
           +  N    ++PP +  L  L+ L  S N+    +   +  L  L +L + +N        
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAI 526

Query: 229 EFIGKWKKIQKLHIQG---SSLEGPIPASISALTSLTDL 264
           + +    ++  L++QG      EG        L S++ +
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 50/310 (16%), Positives = 95/310 (30%), Gaps = 31/310 (10%)

Query: 55  DWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSK 114
            ++  +   S+ G   L  D+        T D  +   HV    L A +L   LP    +
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 115 LRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGP----FPKVLTNITTLKNLSI 170
           + +          L       W      +  +    LS          L +   L+ L  
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP 379

Query: 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD-----NNFSG 225
           E      +I   +R L  L            E     + L  ++ +R +      + F  
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEK--------ETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431

Query: 226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKGSESAFPKLDKMN 283
           +      ++  ++ LH+    L   +   +  L  +T L +S   L+    A   L    
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALR--C 487

Query: 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN---FMYLTGN 340
           L+ L  +   +   +   + ++ +L+ + L  N L        + L        + L GN
Sbjct: 488 LEVLQASDNAL-ENVDG-VANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGN 543

Query: 341 KLTGPVPKYI 350
            L        
Sbjct: 544 SLCQE-EGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 9e-07
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSG-PFPKVLTNITTL 165
            LP  L+ LR L+ L  S N L  +        +L EL +  NRL      + L +   L
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 166 KNLSIEGNLFTGSIPPDIRKLINL 189
             L+++GN           +L  +
Sbjct: 536 VLLNLQGNSLC-QEEGIQERLAEM 558

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 26/161 (16%)

Query: 85  CDCSSAT--CH--------------VVTIALKAQNLTGTLPT-ELSKLRYLKQLDLSRNC 127
           C C   T  C                  + L     T    T    KL  L++++ S N 
Sbjct: 9   CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK 68

Query: 128 LT----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI 183
           +T    G+F        + E+ +  NRL     K+   + +LK L +  N  T  +  D 
Sbjct: 69  ITDIEEGAFEGA---SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDS 124

Query: 184 -RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF 223
              L +++ L L  N  T   P     L +L+ L +  N F
Sbjct: 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 34/168 (20%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
            IP  I       +L L++N FT  E      KL  L  +  S+N              K
Sbjct: 25  KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------------K 68

Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISD--LKG-SESAFPKLDKMNLKTLILTKCL 293
           I  +             +    + + ++ ++   L+      F  L+  +LKTL+L    
Sbjct: 69  ITDIE----------EGAFEGASGVNEILLTSNRLENVQHKMFKGLE--SLKTLMLRSNR 116

Query: 294 IHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
           I   + +     ++ ++ + L  N +T   P  F+ L   + + L  N
Sbjct: 117 IT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 56/306 (18%), Positives = 106/306 (34%), Gaps = 53/306 (17%)

Query: 88  SSATCHVVTIALKAQNLTGT----LPTELSKLRYLKQLDLSRNCLTGSFSPQWASL---- 139
            + +C +  ++L+   LTG     L + L  L  L++L LS N L  +            
Sbjct: 81  QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 140 --QLVELSVMGNRLS----GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL------- 186
             +L +L +    LS     P   VL      K L++  N    +    +R L       
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA---GVRVLCQGLKDS 197

Query: 187 -INLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGKIPEFIGKW-----KK 236
              L+ L L S   T +    L   +    +L +L +  N         +         +
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 237 IQKLHIQGSSL--EG--PIPASISALTSLTDLRISDLK-GSESA---FPKLDKMN--LKT 286
           ++ L I    +  +G   +   + A  SL +L ++  + G E A      L +    L++
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 287 LILTKCLIHGEIPDYIGDM----TKLKNIDLSFNNLT-GGIPTTFEKLAKTN----FMYL 337
           L +  C        +   +      L  + +S N L   G+    + L +       ++L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 338 TGNKLT 343
               ++
Sbjct: 378 ADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 50/281 (17%), Positives = 95/281 (33%), Gaps = 55/281 (19%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWA------SLQLVELSVMGNRLS----GPFPKVLTN 161
           L     L +L+L  N L               S ++ +LS+    L+    G     L  
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLI--------NLQKLILSSNSFTGE----LPAELTK 209
           + TL+ L +  NL   +    ++ L          L+KL L   S +      L + L  
Sbjct: 112 LPTLQELHLSDNLLGDA---GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 210 LTNLNDLRISDNNFSGKIPEFIGK-----WKKIQKLHIQGSSLEGPIPASISAL------ 258
             +  +L +S+N+ +      + +       +++ L ++   +      +   L      
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCGIVAS 225

Query: 259 -TSLTDLRISD----LKGSESAFPKLDKMN--LKTLILTKCLIHGEIPDYIGDM----TK 307
             SL +L +        G     P L   +  L+TL + +C I  +    +  +      
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 308 LKNIDLSFNNLTG-GIPTTFEKLAKTNFM----YLTGNKLT 343
           LK + L+ N L   G     E L +        ++     T
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 9e-07
 Identities = 44/242 (18%), Positives = 85/242 (35%), Gaps = 46/242 (19%)

Query: 118 LKQLDLSRNCLTGSFSPQWASL-----QLVELSVMGNRLS----GPFPKVLTNITTLKNL 168
           ++ LD+    L+     +WA L     Q   + +    L+          L     L  L
Sbjct: 5   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 169 SIEGNLFTGSIPPDIRKL--------INLQKLILSSNSFTGE----LPAELTKLTNLNDL 216
           ++  N         +  +          +QKL L +   TG     L + L  L  L +L
Sbjct: 62  NLRSNELGDV---GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 217 RISDNNFSGKIPEFIGK-----WKKIQKLHIQGSSL--EG--PIPASISALTSLTDLRIS 267
            +SDN       + + +       +++KL ++  SL      P+ + + A     +L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 268 DLKGSESAFPKLDKM------NLKTLILTKCLIHGEIPDYIGDM----TKLKNIDLSFNN 317
           +   +E+    L +        L+ L L  C +  +    +  +      L+ + L  N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 318 LT 319
           L 
Sbjct: 239 LG 240

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 9/152 (5%)

Query: 119 KQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG 177
           ++LDL    L       +  L +L  L++  N+L      V  ++T L  L +  N    
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 178 SIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPE--FIGK 233
           S+P  +   L  L KL L  N     LP+ +  +LT L +LR++ N     IP   F  K
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF-DK 153

Query: 234 WKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265
              +Q L +  + L+     +   L  L  + 
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 45/190 (23%), Positives = 65/190 (34%), Gaps = 36/190 (18%)

Query: 158 VLTNI-TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL-TKLTNLND 215
           V + I    + L ++            R L  L  L L  N     L A +   LT L  
Sbjct: 29  VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGT 87

Query: 216 LRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISD--LKG- 271
           L +++N              ++  L           P  +   LT L  L +    LK  
Sbjct: 88  LGLANN--------------QLASL-----------PLGVFDHLTQLDKLYLGGNQLKSL 122

Query: 272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFEKLA 330
               F +L    LK L L    +   IP    D +T L+ + LS N L       F++L 
Sbjct: 123 PSGVFDRL--TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 331 KTNFMYLTGN 340
           K   + L GN
Sbjct: 180 KLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 114 KLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNL 168
            L  L  L L+ N L     G F      L QL +L + GN+L      V   +T LK L
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFD----HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136

Query: 169 SIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF 223
            +  N    SIP     KL NLQ L LS+N           +L  L  + +  N F
Sbjct: 137 RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 91  TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL----QLVELSV 146
             H  +     ++        L     L +L +           +   L    +L  L++
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL--ELRDLRGLGELRNLTI 63

Query: 147 MGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT 200
           + + L    P        L  L++  N    S+     + ++LQ+L+LS N   
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 251 IPASISALTSLTDLRISDLKGSES----AFPKLDKMNLKTLILTKCLIHGEIPDYI-GDM 305
               +    +LT+L I + +  +         L    L+ L + K  +   +        
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG--ELRNLTIVKSGLR-FVAPDAFHFT 79

Query: 306 TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343
            +L  ++LSFN L      T + L+    + L+GN L 
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLSLQE-LVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPE--FIGKW 234
                +    NL +L + +      L    L  L  L +L I  +     +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT- 79

Query: 235 KKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
            ++ +L++  ++LE  +        SL +L +S 
Sbjct: 80  PRLSRLNLSFNALES-LSWKTVQGLSLQELVLSG 112

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 119 KQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG 177
           + L L  N +T      + SL  L EL +  N+L      V  ++T L  L +  N  T 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 178 SIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221
            +P  +  +L++L++L +  N  T ELP  + +LT+L  L +  N
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 39/282 (13%), Positives = 85/282 (30%), Gaps = 71/282 (25%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-----------LVELSVMGNRLSG----PFP 156
           ++  + L+  + S             +L+           L  + +  N        P  
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 157 KVLTNITTLKNLSIEGN-------------LFTGSIPPDIRKLINLQKLILSSNSFTGE- 202
             L+  T L++L +  N             L   ++    +    L+ +I   N      
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 203 ---LPAELTKLTNLNDLRISDNNFSGK-----IPEFIGKWKKIQKLHIQGSSLEGPIPAS 254
                        L+ +++  N    +     + E +   ++++ L +Q ++    + +S
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSS 234

Query: 255 I--SALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDM------T 306
               AL S                      NL+ L L  CL+       + D        
Sbjct: 235 ALAIALKSWP--------------------NLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 307 KLKNIDLSFNNLTGGIPTTFEKLAKTN-----FMYLTGNKLT 343
            L+ + L +N +      T + +         F+ L GN+ +
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 43/235 (18%)

Query: 141 LVELSVMGNRLSG----PFPKVLTNITTLKNLSIEGNLFTG----SIPPDIRKLINLQKL 192
           +   S+  + ++         VL    ++K + + GN         +  +I    +L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 193 ILSSNSFTGELPAE-----------LTKLTNLNDLRISDNNFSGK----IPEFIGKWKKI 237
             S   FTG +  E           L K   L+ +R+SDN F       + +F+ K   +
Sbjct: 66  EFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE 297
           + L++  + L    P + + +          L+         +   L+++I  +  +   
Sbjct: 125 EHLYLHNNGLG---PQAGAKIARA-------LQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 298 IPDYIGDM----TKLKNIDLSFNNLTG-GIPTTFEKLAKTN----FMYLTGNKLT 343
                         L  + +  N +   GI     +          + L  N  T
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 114 KLRYLKQLDLSRNCLT----GSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNL 168
           +L  L  L L+ N L     G F      L  L EL ++ N+L      V   +T L  L
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVF----DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 169 SIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAEL-TKLTNLNDLRISDN 221
           ++  N    S+P  +  KL NL +L LS N     LP  +  KLT L DLR+  N
Sbjct: 139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 34/192 (17%)

Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
                 +++    T        +L ++ ++I +++     +   +  L N+  L +  N 
Sbjct: 19  AETIKANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNK 74

Query: 223 FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISDLKGSESAFPKLDK 281
               I     +   +  L + G+ L+  +P  +   LT+L +L              L +
Sbjct: 75  LH-DISAL-KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV-------------LVE 118

Query: 282 MNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
             L++L           PD + D +T L  ++L+ N L       F+KL     + L+ N
Sbjct: 119 NQLQSL-----------PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

Query: 341 KLTGPVPKYIFN 352
           +L   +P+ +F+
Sbjct: 168 QLQS-LPEGVFD 178

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVE 143
           C CS  T    +    +  +   +P +         LDL  N L    +  +  L  L +
Sbjct: 5   CSCSGTTVECYSQGRTS--VPTGIPAQT------TYLDLETNSLKSLPNGVFDELTSLTQ 56

Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGE 202
           L + GN+L      V   +T+L  L++  N    S+P  +  KL  L++L L++N     
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-S 114

Query: 203 LPAEL-TKLTNLNDLRISDN 221
           LP  +  KLT L DLR+  N
Sbjct: 115 LPDGVFDKLTQLKDLRLYQN 134

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
           +   LS L+  K L LS N +    S       L  LS+  N +      +     TL+ 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIKK-IENLDAVADTLEE 97

Query: 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRISDN 221
           L I  N    S+   I KL+NL+ L +S+N  T  GE+  +L  L  L DL ++ N
Sbjct: 98  LWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 143 ELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTG 201
           EL + GN+ +   PK L+N   L  + +  N  + ++       +  L  LILS N    
Sbjct: 35  ELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 202 ELPAELT-KLTNLNDLRISDNNFSGKIPE 229
            +P      L +L  L +  N+ S  +PE
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTG-SFSPQWASLQLVELSVMGNRLSGPFPKVLT 160
           ++  G +    ++   L+ L L    L   S  P+   L+ +ELS   NR+ G    +  
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS--ENRIFGGLDMLAE 92

Query: 161 NITTLKNLSIEGNLFT--GSIPPDIRKLINLQKLILSSNSFTGE------LPAELTKLTN 212
            +  L +L++ GN      ++ P ++KL  L+ L L +   T        +   L +LT 
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151

Query: 213 LNDLRISDN 221
           L+     D 
Sbjct: 152 LDGYDREDQ 160

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 31/235 (13%), Positives = 76/235 (32%), Gaps = 30/235 (12%)

Query: 112 LSKLRYLKQLDLSRNCLT-------GSFSPQWASLQLVELSVMGNRLSGP--FPKVLTNI 162
           ++  R +K L +  +  +          +    SL+++   +       P     +  N 
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 163 TTLKNLSIEG--NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220
            +L ++ +     L           L       L+ +    E    L     L  L +S 
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG--SESAFPK 278
              +  +P       +I+KL +  + LE       + +    +L + + +    +     
Sbjct: 280 MGPNE-MPILFPFAAQIRKLDLLYALLETE--DHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 279 LDKM--NLKTLILTKCLIHGEIPDYIGDMT------------KLKNIDLSFNNLT 319
           L +    LK L + +      + D  G ++            +L+ + +  +++T
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLS 169
            + +     ++LDL    +    +      Q   +    N +     + L     L+ L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLK 67

Query: 170 ---IEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRISDN 221
              +  N          + L +L +LIL++NS    G+L   L  L +L  L I  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 32/213 (15%), Positives = 81/213 (38%), Gaps = 13/213 (6%)

Query: 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG-NLFTG 177
           + LDL+   L    + +  S  ++      + +  P  +  +    ++++ +    +   
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVS 108

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD-NNFSGKIPEFIGK-WK 235
           ++   + +   LQ L L     +  +   L K +NL  L +S  + FS    + +     
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168

Query: 236 KIQKLHIQGSSL---EGPIPASISALTSLTDLRISDLKG--SESAFPKLDKM--NLKTLI 288
           ++ +L++        +    A      ++T L +S  +    +S    L +   NL  L 
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 289 LTKC-LIHGEIPDYIGDMTKLKNIDLSF-NNLT 319
           L+   ++  +       +  L+++ LS   ++ 
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 112 LSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMG------NRLSGPFPKVLTNITT 164
           +++   LK L L+R       +       QL EL   G        +       L+    
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

Query: 165 LKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNF 223
           L+ LS   +     +P        L  L LS  +     L   L +   L  L + D   
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326

Query: 224 SGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDL 269
              +       K +++L +  S      P  +    +LT+  +  +
Sbjct: 327 DAGLEVLASTCKDLRELRVFPSE-----PFVMEPNVALTEQGLVSV 367

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 140 QLVELSVMGNRLS-GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198
            + EL +  +R + G    +      L+ LS      T SI  ++ KL  L+KL LS N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNR 75

Query: 199 FTGELPAELTKLTNLNDLRISDNNFS 224
            +G L     K  NL  L +S N   
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 161 NITTLKNLSIEGNLFT-GSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
             + +K L ++ +    G +     +   L+ L   +   T  + A L KL  L  L +S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG 271
           DN  SG +     K   +  L++ G+ ++    ++I  L  L +L+  DL  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 28/122 (22%)

Query: 102 QNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTN 161
           ++  G L     +   L+ L      LT                     ++      L  
Sbjct: 28  RSNEGKLEGLTDEFEELEFLSTINVGLT--------------------SIAN-----LPK 62

Query: 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRIS 219
           +  LK L +  N  +G +     K  NL  L LS N       +   L KL NL  L + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLF 121

Query: 220 DN 221
           + 
Sbjct: 122 NC 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 143 ELSVMGNRLSG-PFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFT 200
           EL +  N L       +   +  L  L ++ N  T  I P+      ++Q+L L  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 201 GELPAEL-TKLTNLNDLRISDN 221
            E+  ++   L  L  L + DN
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	700
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.76
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	93.53
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	92.19
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	91.02
4aoj_A	329	High affinity nerve growth factor receptor; transf	90.8
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	89.93
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	87.56
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	84.79
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	84.6
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	82.93
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	82.13
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	80.72

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.1e-38  Score=326.11  Aligned_cols=295  Identities=25%  Similarity=0.429  Sum_probs=254.6

Q ss_pred             CCCHHHHHHHHHHHHhcCC----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCC--cC
Q 005361           35 KLHAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTG--TL  108 (700)
Q Consensus        35 ~~~~~e~~al~~l~~~~~~----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~--~~  108 (700)
                      .|.++|++||.+|++.++.    .+|..+.++|.  +.|           .||+|+.....++|+.|+|+++.+++  .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~--~~w-----------~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN--RTW-----------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT--TCS-----------TTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc--CCC-----------cceEeCCCCCCceEEEEECCCCCccCCccc
Confidence            5889999999999999965    47987788883  248           89999864334799999999999999  89


Q ss_pred             chhhcCCCCCCEEECcC-CCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361          109 PTELSKLRYLKQLDLSR-NCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL  186 (700)
Q Consensus       109 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  186 (700)
                      |..|.++++|++|+|++ |.+.+.+|..+..++ |++|++++|.+++.+|..|.++++|++|+|++|.+.+.+|..+..+
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            99999999999999995 999999999999888 9999999999998899999999999999999999998899999999


Q ss_pred             CCccEEEeeecCCCCcCchhhhCCC-CCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEE
Q 005361          187 INLQKLILSSNSFTGELPAELTKLT-NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR  265 (700)
Q Consensus       187 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  265 (700)
                      ++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+++|+.|+
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence            9999999999999988999999998 899999999999888888888887 99999999998888888787777766666


Q ss_pred             cCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCC
Q 005361          266 ISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP  345 (700)
Q Consensus       266 l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  345 (700)
                      +++                       |.+++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.
T Consensus       228 L~~-----------------------N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          228 LAK-----------------------NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CCS-----------------------SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCC-----------------------CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            555                       555555554 67788899999999999888898899999999999999999988


Q ss_pred             Cchhh-hcCCCeeeeecCc-cccc
Q 005361          346 VPKYI-FNSNKNVDISLNN-FTWE  367 (700)
Q Consensus       346 ip~~~-~~~l~~L~ls~N~-l~~~  367 (700)
                      +|..- +++++.+++++|+ +.|.
T Consensus       284 ip~~~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          284 IPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             CCCCccccccChHHhcCCCCccCC
Confidence            88752 4578889999997 5553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5e-36  Score=342.42  Aligned_cols=348  Identities=21%  Similarity=0.292  Sum_probs=281.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccCC-CCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCcCchhhcCC
Q 005361           37 HAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSD-DKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKL  115 (700)
Q Consensus        37 ~~~e~~al~~l~~~~~~~~w~~~~d~C~~~~~w~~~~~-~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l  115 (700)
                      ...|++||.++++++++..|....+.|.....|....+ +..+...||+|+..   +||+.|+|+++++.|.+|++|++|
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~---~~V~~L~L~~~~l~g~lp~~l~~L  104 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN---GRVTGLSLEGFGASGRVPDAIGQL  104 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT---CCEEEEECTTSCCEEEECGGGGGC
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC---CCEEEEEecCcccCCcCChHHhcC
Confidence            44699999999999988889876666655557864322 22222389999853   799999999999999999999999


Q ss_pred             CCCCEEECcCCCC-------------------------------------------------------------------
Q 005361          116 RYLKQLDLSRNCL-------------------------------------------------------------------  128 (700)
Q Consensus       116 ~~L~~L~L~~n~l-------------------------------------------------------------------  128 (700)
                      ++|++|+|++|.+                                                                   
T Consensus       105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~  184 (636)
T 4eco_A          105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK  184 (636)
T ss_dssp             TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred             ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence            9999999998843                                                                   


Q ss_pred             -----------CCCccccccccc-ccEEEccCCCCCCC-----------------CchhcC--CCCCCCEEEccCCcCCC
Q 005361          129 -----------TGSFSPQWASLQ-LVELSVMGNRLSGP-----------------FPKVLT--NITTLKNLSIEGNLFTG  177 (700)
Q Consensus       129 -----------~~~~~~~~~~l~-L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~  177 (700)
                                 ++ +|..+..++ |++|+|++|.+++.                 +|..++  ++++|++|+|++|.+.+
T Consensus       185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence                       34 677788888 99999999999985                 899988  99999999999999999


Q ss_pred             CCCccccCCCCccEEEeeecC-CCC-cCchhhhCC------CCCcEEEeecCcCCCCChh--hhcCCCcccEEEccCCCC
Q 005361          178 SIPPDIRKLINLQKLILSSNS-FTG-ELPAELTKL------TNLNDLRISDNNFSGKIPE--FIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       178 ~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l  247 (700)
                      .+|..|+++++|++|++++|. +++ .+|..+..+      ++|++|++++|.++ .+|.  .++.+++|+.|++++|.+
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence            999999999999999999998 888 788888876      99999999999999 7887  899999999999999999


Q ss_pred             CCCchhhhhcCCCCCEEEcCCCCCCCCcccc-cCc-cC-ccEEEcccCCCCCCCchhhcCCC--CCCEEeccCCCCCCCC
Q 005361          248 EGPIPASISALTSLTDLRISDLKGSESAFPK-LDK-MN-LKTLILTKCLIHGEIPDYIGDMT--KLKNIDLSFNNLTGGI  322 (700)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~-~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~  322 (700)
                      .|.+| .+..+++|+.|++++|.+.  .+|. +.. ++ |+.|+|++|.++ .+|..+..++  +|+.|+|++|++++.+
T Consensus       343 ~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          343 EGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             EEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             ccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence            98888 8889999999999998776  3333 444 67 999999999998 7777776654  8999999999999888


Q ss_pred             hhhHh-------cCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCC-CCC---CCCccceecccCC
Q 005361          323 PTTFE-------KLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPI-ECP---RGSVNLVESYSSP  388 (700)
Q Consensus       323 p~~~~-------~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~-~C~---~~~~~~~~~~~~~  388 (700)
                      |..+.       .+++|+.|+|++|+++ .+|..++   ++++.|+|++|.++ .+|..+ ...   +....-++.+...
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred             hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence            88887       7789999999999998 6777654   47889999999988 666544 111   1112245566666


Q ss_pred             CCCCCCc
Q 005361          389 RNKLDKV  395 (700)
Q Consensus       389 ~~~~~~~  395 (700)
                      .|.+..+
T Consensus       497 ~N~l~~l  503 (636)
T 4eco_A          497 FNKLTKL  503 (636)
T ss_dssp             SSCCCBC
T ss_pred             CCcCCcc
Confidence            6666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.5e-35  Score=340.43  Aligned_cols=345  Identities=19%  Similarity=0.267  Sum_probs=275.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCC-----CC--CCCCCCCcccCC-CCCCCCCCeeeCCCCCcCcEEEEEecCCCCCC
Q 005361           35 KLHAEEVKALKQIGRKLGKKDWNFGV-----DP--CSQKGNWELSSD-DKKGFESNVTCDCSSATCHVVTIALKAQNLTG  106 (700)
Q Consensus        35 ~~~~~e~~al~~l~~~~~~~~w~~~~-----d~--C~~~~~w~~~~~-~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~  106 (700)
                      ....+|++||++|+++++..+|..+.     +|  |    .|..... +..+...||+|++   .++|+.|+|+++++.|
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C----~W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSL----NWNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCC----SCCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTCCEE
T ss_pred             ccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCcc----ccccccccccccCcCceEecC---CCCEEEEECccCCCCC
Confidence            34667999999999999877897654     66  6    6744322 3445558999986   4799999999999999


Q ss_pred             cCchhhcCCCCCCEEEC-cCCCCCCC------------------------------------------------------
Q 005361          107 TLPTELSKLRYLKQLDL-SRNCLTGS------------------------------------------------------  131 (700)
Q Consensus       107 ~~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------------------  131 (700)
                      .+|+.|++|++|++|+| ++|.+.|.                                                      
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            99999999999999999 77754332                                                      


Q ss_pred             ----------------------ccccccccc-ccEEEccCCCCCC-----------------CCchhcC--CCCCCCEEE
Q 005361          132 ----------------------FSPQWASLQ-LVELSVMGNRLSG-----------------PFPKVLT--NITTLKNLS  169 (700)
Q Consensus       132 ----------------------~~~~~~~l~-L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~  169 (700)
                                            +|..+..++ |++|+|++|.+++                 .+|..++  ++++|++|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  677788888 9999999999997                 3888877  999999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecC-CCC-cCchhhhCCC-------CCcEEEeecCcCCCCChh--hhcCCCccc
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNS-FTG-ELPAELTKLT-------NLNDLRISDNNFSGKIPE--FIGKWKKIQ  238 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~  238 (700)
                      |++|.+.+.+|..|+++++|+.|+|++|. +++ .+|..+..++       +|++|+|++|.++ .+|.  .+..+++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            99999999999999999999999999998 887 7887766555       9999999999998 7787  899999999


Q ss_pred             EEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCccc-ccCc-cC-ccEEEcccCCCCCCCchhhcCCCC--CCEEec
Q 005361          239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP-KLDK-MN-LKTLILTKCLIHGEIPDYIGDMTK--LKNIDL  313 (700)
Q Consensus       239 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~-~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L  313 (700)
                      .|+|++|.+. .+| .+..+++|+.|++++|.+.  .+| .+.. ++ |+.|+|++|.++ .+|..+..++.  |+.|+|
T Consensus       577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred             EEECCCCCcc-cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence            9999999998 777 8889999999999998877  344 3554 67 999999999998 77777766654  999999


Q ss_pred             cCCCCCCCChhhH---h--cCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCC-----CCCcc
Q 005361          314 SFNNLTGGIPTTF---E--KLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECP-----RGSVN  380 (700)
Q Consensus       314 s~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~-----~~~~~  380 (700)
                      ++|++++.+|...   .  .+++|+.|+|++|+++ .+|..++   ++++.|+|++|.++ .+|..+ +.     |....
T Consensus       652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~-~~~~~~~l~nl~  728 (876)
T 4ecn_A          652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS-LKPKDGNYKNTY  728 (876)
T ss_dssp             CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS-SSCTTSCCTTGG
T ss_pred             cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH-hccccccccccC
Confidence            9999987665322   2  3458999999999998 7787765   57889999999888 666544 22     22233


Q ss_pred             ceecccCCCCCCCCc
Q 005361          381 LVESYSSPRNKLDKV  395 (700)
Q Consensus       381 ~~~~~~~~~~~~~~~  395 (700)
                      -++.+....|.+..+
T Consensus       729 ~L~~L~Ls~N~L~~l  743 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSL  743 (876)
T ss_dssp             GCCEEECCSSCCCCC
T ss_pred             CccEEECCCCCCccc
Confidence            556666666666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.4e-35  Score=339.46  Aligned_cols=311  Identities=29%  Similarity=0.425  Sum_probs=197.3

Q ss_pred             CHHHHHHHHHHHHhcCC----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCc---Cc
Q 005361           37 HAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGT---LP  109 (700)
Q Consensus        37 ~~~e~~al~~l~~~~~~----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~---~~  109 (700)
                      .++|++||++||+.+..    .+|..+.|+|    .|           .||+|+    .++|+.|+|+++.+.|.   ++
T Consensus        10 ~~~~~~all~~k~~~~~~~~l~~W~~~~~~C----~w-----------~gv~C~----~~~v~~L~L~~~~l~g~~~~l~   70 (768)
T 3rgz_A           10 LYREIHQLISFKDVLPDKNLLPDWSSNKNPC----TF-----------DGVTCR----DDKVTSIDLSSKPLNVGFSAVS   70 (768)
T ss_dssp             HHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG----GS-----------TTEEEE----TTEEEEEECTTSCCCEEHHHHH
T ss_pred             CHHHHHHHHHHHhhCCCcccccCCCCCCCCc----CC-----------cceEEC----CCcEEEEECCCCCcCCccCccC
Confidence            67899999999998853    5798778888    78           899997    47999999999999886   55


Q ss_pred             h-----------------------hhcCCCCCCEEECcCCCCCCCccc--cccccc-ccEEEccCCCCCCCCchhc-CCC
Q 005361          110 T-----------------------ELSKLRYLKQLDLSRNCLTGSFSP--QWASLQ-LVELSVMGNRLSGPFPKVL-TNI  162 (700)
Q Consensus       110 ~-----------------------~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~-L~~L~L~~n~l~~~~p~~~-~~l  162 (700)
                      +                       .|.++++|++|+|++|.+.+.+|.  .+..++ |++|+|++|.+.+..|..+ .++
T Consensus        71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  150 (768)
T 3rgz_A           71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL  150 (768)
T ss_dssp             HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred             hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence            4                       455556666666666666655555  555555 6666666666655555544 556


Q ss_pred             CCCCEEEccCCcCCCCCCcc---ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361          163 TTLKNLSIEGNLFTGSIPPD---IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK  239 (700)
Q Consensus       163 ~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  239 (700)
                      ++|++|+|++|.+++..|..   +.++++|++|++++|.+++..+.  ..+++|++|++++|.+++.+|. ++.+++|++
T Consensus       151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~  227 (768)
T 3rgz_A          151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH  227 (768)
T ss_dssp             TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred             CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence            66666666666665554444   45555566666665555544332  5677777777777777776666 778888888


Q ss_pred             EEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCC-CCCCEEeccCCCC
Q 005361          240 LHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDM-TKLKNIDLSFNNL  318 (700)
Q Consensus       240 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l  318 (700)
                      |+|++|.+++.+|..+..+++|+.|++++|.+.. ..|....++|++|+|++|.+++.+|..+... ++|++|+|++|++
T Consensus       228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             EECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence            8888888887888888888888888888766542 2222222455555555555555555444332 5555555555555


Q ss_pred             CCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCC
Q 005361          319 TGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSD  370 (700)
Q Consensus       319 ~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~  370 (700)
                      ++.+|..|..+++|+.|+|++|+++|.+|...   +++++.|++++|.+++.+|.
T Consensus       307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~  361 (768)
T 3rgz_A          307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE  361 (768)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred             CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence            55555555555555555555555554444431   12344444444444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.1e-34  Score=332.05  Aligned_cols=278  Identities=30%  Similarity=0.499  Sum_probs=214.9

Q ss_pred             EEEEEecCCCCCCcCchhhcC--CCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           94 VVTIALKAQNLTGTLPTELSK--LRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      ++.|++++|.+++.+|..+..  +++|++|+|++|.+++.+|..+..++ |++|++++|.+++.+|..+.++++|++|+|
T Consensus       370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  449 (768)
T 3rgz_A          370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL  449 (768)
T ss_dssp             CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence            444444444444444444433  55666666666666666677777776 888888888877777777888888888888


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      ++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|+|++|++++.+|..++.+++|++|+|++|.+.+.
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  529 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN  529 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence            88888877787888888888888888888877788888888888888888888877888888888888888888888877


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcc------------------------------------------------------
Q 005361          251 IPASISALTSLTDLRISDLKGSESAF------------------------------------------------------  276 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~------------------------------------------------------  276 (700)
                      +|..+..+++|+.|++++|.+.....                                                      
T Consensus       530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  609 (768)
T 3rgz_A          530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST  609 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred             CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence            88888888888888887765431100                                                      


Q ss_pred             ----------------cccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccC
Q 005361          277 ----------------PKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG  339 (700)
Q Consensus       277 ----------------~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  339 (700)
                                      +.+.. .+|+.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|||++
T Consensus       610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence                            01222 5788999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361          340 NKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       340 N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~  371 (700)
                      |+++|.+|..+.  ..++.||+++|+++|.+|..
T Consensus       690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             CcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999998775  47889999999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-33  Score=309.26  Aligned_cols=289  Identities=18%  Similarity=0.248  Sum_probs=217.9

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCc-cccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSF-SPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      +.+++.|+|++|.+++..|..|.++++|++|+|++|.+.+.+ +..|..++ |++|+|++|.+++..|..|.++++|++|
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            468999999999999988999999999999999999987554 56788888 9999999999998889999999999999


Q ss_pred             EccCCcCCCCCCcc--ccCCCCccEEEeeecCCCCcCchh-hhCCCCCcEEEeecCcCCCCChhhhcCC-----------
Q 005361          169 SIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKW-----------  234 (700)
Q Consensus       169 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------  234 (700)
                      +|++|.+++..+..  |..+++|++|+|++|.+++..|.. +..+++|++|++++|.+++..+..+..+           
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            99999998755544  888999999999999999877765 7889999999999999887666554432           


Q ss_pred             -----------------------CcccEEEccCCCCCC------------------------------------------
Q 005361          235 -----------------------KKIQKLHIQGSSLEG------------------------------------------  249 (700)
Q Consensus       235 -----------------------~~L~~L~L~~n~l~~------------------------------------------  249 (700)
                                             ++|+.|++++|.+.+                                          
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence                                   456666666665543                                          


Q ss_pred             ---------------------CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCC
Q 005361          250 ---------------------PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTK  307 (700)
Q Consensus       250 ---------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~  307 (700)
                                           ..|..+..+++|+.|++++|.+.......+.. ++|+.|+|++|.+++..|..+..+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence                                 34455666667777777766665544444544 67777777777777666777777777


Q ss_pred             CCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCCCCCCCCCCc-ccee
Q 005361          308 LKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSDPIECPRGSV-NLVE  383 (700)
Q Consensus       308 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~~~~C~~~~~-~~~~  383 (700)
                      |++|+|++|++++..|..|..+++|+.|+|++|++++ +|...   +++++.|++++|+++        |+|... ++..
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~l~~  419 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD--------CSCPRIDYLSR  419 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHH
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcc--------cCCCcchHHHH
Confidence            7777777777776667777777777777777777774 44332   246677777777554        777643 4456


Q ss_pred             cccCC
Q 005361          384 SYSSP  388 (700)
Q Consensus       384 ~~~~~  388 (700)
                      |+...
T Consensus       420 ~l~~~  424 (455)
T 3v47_A          420 WLNKN  424 (455)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            76544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=307.62  Aligned_cols=288  Identities=18%  Similarity=0.194  Sum_probs=228.4

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      .+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..++ |++|+|++|.++...+..|.++++|++|
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            345789999999999988888999999999999999999988888999888 9999999999997777778999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      +|++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            99999999888888999999999999999998888888999999999999999998877778888999999999998888


Q ss_pred             CCchhhhhcCCCCCEEEcCCCCCCC------------------------CcccccCc-cCccEEEcccCCCCCCCchhhc
Q 005361          249 GPIPASISALTSLTDLRISDLKGSE------------------------SAFPKLDK-MNLKTLILTKCLIHGEIPDYIG  303 (700)
Q Consensus       249 ~~~~~~~~~l~~L~~L~l~~n~~~~------------------------~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~  303 (700)
                      +..+..|..+++|+.|++++|....                        .+...+.. ++|+.|+|++|.+++..+..|.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            7666677777777777776654322                        21112333 5677777777777666666666


Q ss_pred             CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCCCCCCCCCccc
Q 005361          304 DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNL  381 (700)
Q Consensus       304 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~  381 (700)
                      .+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+  +++++.|+|++|++        .|+|...|+
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l--------~c~c~~~~~  341 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL--------ACDCRLLWV  341 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE--------ECSGGGHHH
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc--------cCccchHhH
Confidence            77777777777777776667777777777777777777774333322  24677778877754        499988877


Q ss_pred             eecc
Q 005361          382 VESY  385 (700)
Q Consensus       382 ~~~~  385 (700)
                      ..|.
T Consensus       342 ~~~~  345 (477)
T 2id5_A          342 FRRR  345 (477)
T ss_dssp             HTTT
T ss_pred             Hhhh
Confidence            7654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7e-33  Score=317.43  Aligned_cols=312  Identities=19%  Similarity=0.234  Sum_probs=241.2

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      .+..++.|+|++|.|++..+.+|.++++|++|+|++|.++++.+.+|..++ |++|+|++|++++..+..|.++++|++|
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            456899999999999988888999999999999999999998899999998 9999999999998888889999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhc---------------
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIG---------------  232 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---------------  232 (700)
                      +|++|++++..+..|+++++|++|+|++|.++.. .|..+..+++|++|++++|++++..+..+.               
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            9999999977777899999999999999999753 578888999999999998876532211100               


Q ss_pred             --------------------------------------------------------------------------------
Q 005361          233 --------------------------------------------------------------------------------  232 (700)
Q Consensus       233 --------------------------------------------------------------------------------  232 (700)
                                                                                                      
T Consensus       210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------------C
Q 005361          233 -------------------------------------------------------------------------------K  233 (700)
Q Consensus       233 -------------------------------------------------------------------------------~  233 (700)
                                                                                                     .
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  369 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD  369 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred             hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence                                                                                           0


Q ss_pred             CCcccEEEccCCCCCC----------------------------------------------------------------
Q 005361          234 WKKIQKLHIQGSSLEG----------------------------------------------------------------  249 (700)
Q Consensus       234 l~~L~~L~L~~n~l~~----------------------------------------------------------------  249 (700)
                      +++|+.|+++.|.+..                                                                
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            1223333333332210                                                                


Q ss_pred             ----------CchhhhhcCCCCCEEEcCCCCCCCCcccc-cCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCC
Q 005361          250 ----------PIPASISALTSLTDLRISDLKGSESAFPK-LDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNN  317 (700)
Q Consensus       250 ----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  317 (700)
                                ..+..+..+++|+.|++++|.......|. +.. ++|+.|+|++|+|++..|..|.++++|++|+|++|+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence                      01111222233333444433322222222 444 789999999999998889999999999999999999


Q ss_pred             CCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCC
Q 005361          318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDK  394 (700)
Q Consensus       318 l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~  394 (700)
                      |++..|..|..+++|+.|+|++|+|++..|..+.   .+++.|+|++|        +|.|+|...||++|+...+..+..
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N--------p~~C~C~~~~~~~wl~~~~~~~~~  601 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--------DFACTCEHQSFLQWIKDQRQLLVE  601 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC--------CBCCSGGGHHHHHHHHHTTTTBSC
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC--------CCcccCCcHHHHHHHHhCCCccCC
Confidence            9988888899999999999999999987777653   46889999999        555999999999999766544432


Q ss_pred             cccccccCCCCCCCCCCcce
Q 005361          395 VHPCLRQNFPCSAPADQYHY  414 (700)
Q Consensus       395 ~~~~~~~~~~c~~p~~~~~~  414 (700)
                           ...+.|+.|...++.
T Consensus       602 -----~~~~~C~~P~~~~g~  616 (635)
T 4g8a_A          602 -----VERMECATPSDKQGM  616 (635)
T ss_dssp             -----GGGCBBCSSTTTTTC
T ss_pred             -----CCCceeCCchHHCCC
Confidence                 256789999877654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=1.8e-31  Score=304.29  Aligned_cols=132  Identities=28%  Similarity=0.328  Sum_probs=71.8

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      +.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..++ |++|+|++|.+++..|..|.++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            34566666666666655555566666666666666666655555555555 66666666666555555555555555555


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCC-cCchhhhCCCCCcEEEeecCc
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNN  222 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  222 (700)
                      |++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            55555554433444444445555554444443 234444444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.9e-32  Score=309.71  Aligned_cols=307  Identities=19%  Similarity=0.266  Sum_probs=200.9

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchh-------------
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKV-------------  158 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~-------------  158 (700)
                      +++.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..++ |++|++++|.+.+..|..             
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            4555555555555544444555555555555555554 2333344444 555555555554444444             


Q ss_pred             ------------cCCCCCCCEEEccCCcCCCCC--CccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC
Q 005361          159 ------------LTNITTLKNLSIEGNLFTGSI--PPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS  224 (700)
Q Consensus       159 ------------~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  224 (700)
                                  +..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence                        445555555555555554333  444555666666666666665555566666666666666666666


Q ss_pred             CCChh-hhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCccc---ccCc-cCccEEEcccCCCCCCCc
Q 005361          225 GKIPE-FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP---KLDK-MNLKTLILTKCLIHGEIP  299 (700)
Q Consensus       225 ~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~l~~-~~L~~L~L~~n~l~~~~p  299 (700)
                      +..+. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....++   .+.. ++|+.|+|++|++++..|
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            54433 366777777777777777777777777788888888887776553332   2444 788888888888887778


Q ss_pred             hhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCCCCCCCC
Q 005361          300 DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRG  377 (700)
Q Consensus       300 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~  377 (700)
                      ..+..+++|+.|+|++|++++..|..+..++.| .|+|++|++++..|..+  +++++.|++++|++        .|+|.
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~c~c~  564 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL--------DCTCS  564 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE--------ECSGG
T ss_pred             hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc--------cccCC
Confidence            888888888888888888888888888888888 88888888886666544  35788888888855        49999


Q ss_pred             CccceecccCCCCCCCCcccccccCCCCCCCCCCcce
Q 005361          378 SVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHY  414 (700)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~  414 (700)
                      ..|++.|+......+.     ....+.|..|....+.
T Consensus       565 ~~~~~~w~~~~~~~~~-----~~~~~~C~~p~~~~g~  596 (606)
T 3t6q_A          565 NIYFLEWYKENMQKLE-----DTEDTLCENPPLLRGV  596 (606)
T ss_dssp             GHHHHHHHHHCGGGEE-----CGGGCBEEESGGGTTC
T ss_pred             cHHHHHHHHhCccccc-----CCCCCeeCCchHhCCC
Confidence            9999999976533322     1356778887655543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.4e-30  Score=301.05  Aligned_cols=313  Identities=18%  Similarity=0.229  Sum_probs=243.2

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC--cccccccc---cccEEEccCCCCCCCCchhcCCCCCCC
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS--FSPQWASL---QLVELSVMGNRLSGPFPKVLTNITTLK  166 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l---~L~~L~L~~n~l~~~~p~~~~~l~~L~  166 (700)
                      .+++.|++++|.+++..+..|.++++|++|++++|.+...  ....+..+   .|+.|++++|.+++..|..|..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            4677888888888877777788888888888888765432  22233322   388889999999888888899999999


Q ss_pred             EEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC--CCChhhhcCCCcccEEEcc
Q 005361          167 NLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS--GKIPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       167 ~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~  243 (700)
                      +|+|++|.+.+.+| ..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.  +..|..+..+++|+.|+|+
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            99999999986555 67889999999999999998888888999999999999999886  5678889999999999999


Q ss_pred             CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc--------ccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEecc
Q 005361          244 GSSLEGPIPASISALTSLTDLRISDLKGSESA--------FPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLS  314 (700)
Q Consensus       244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  314 (700)
                      +|.+++..+..|..+++|+.|++++|.+....        ...+.. ++|+.|+|++|+++...+..|..+++|+.|+|+
T Consensus       489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls  568 (680)
T 1ziw_A          489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG  568 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence            99999888888999999999999998876532        122455 899999999999996666689999999999999


Q ss_pred             CCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCCCCCCCCCC-ccceecccCCCC
Q 005361          315 FNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSDPIECPRGS-VNLVESYSSPRN  390 (700)
Q Consensus       315 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~~~~C~~~~-~~~~~~~~~~~~  390 (700)
                      +|++++..+..|..+++|+.|+|++|++++..|..+   +++++.|++++|        +|.|+|.. .||..|+.....
T Consensus       569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N--------~~~c~c~~~~~~~~~~~~~~~  640 (680)
T 1ziw_A          569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN--------PFDCTCESIAWFVNWINETHT  640 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC--------CCCBCCCCCSSEECCSSCC--
T ss_pred             CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC--------CcccCCccHHHHHHHHHhcCc
Confidence            999998888888999999999999999997666543   468999999999        66699996 899999876543


Q ss_pred             CCCCcccccccCCCCCCCCCCcceee
Q 005361          391 KLDKVHPCLRQNFPCSAPADQYHYTL  416 (700)
Q Consensus       391 ~~~~~~~~~~~~~~c~~p~~~~~~~~  416 (700)
                      .+.    .....+.|..|...++..+
T Consensus       641 ~~~----~~~~~~~C~~p~~~~g~~l  662 (680)
T 1ziw_A          641 NIP----ELSSHYLCNTPPHYHGFPV  662 (680)
T ss_dssp             --------------------------
T ss_pred             ccc----cccCCcEECCchHHCCCcc
Confidence            332    2235678888876655433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.9e-31  Score=304.45  Aligned_cols=280  Identities=20%  Similarity=0.292  Sum_probs=244.1

Q ss_pred             CCCcCchhhcCCCCCCEEECcCCCCCCC-----------------cccccc--ccc-ccEEEccCCCCCCCCchhcCCCC
Q 005361          104 LTGTLPTELSKLRYLKQLDLSRNCLTGS-----------------FSPQWA--SLQ-LVELSVMGNRLSGPFPKVLTNIT  163 (700)
Q Consensus       104 l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~-L~~L~L~~n~l~~~~p~~~~~l~  163 (700)
                      +++ +|..|+++++|++|+|++|.+++.                 +|..+.  .++ |++|++++|.+.+.+|..|.+++
T Consensus       195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  273 (636)
T 4eco_A          195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP  273 (636)
T ss_dssp             EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred             Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence            335 788899999999999999999985                 888888  888 99999999999999999999999


Q ss_pred             CCCEEEccCCc-CCC-CCCccccCC------CCccEEEeeecCCCCcCch--hhhCCCCCcEEEeecCcCCCCChhhhcC
Q 005361          164 TLKNLSIEGNL-FTG-SIPPDIRKL------INLQKLILSSNSFTGELPA--ELTKLTNLNDLRISDNNFSGKIPEFIGK  233 (700)
Q Consensus       164 ~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~  233 (700)
                      +|++|+|++|+ +++ .+|..++.+      ++|+.|++++|.++ .+|.  .+..+++|++|++++|.++|.+| .+..
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            99999999998 887 789888876      99999999999999 7888  89999999999999999998888 8999


Q ss_pred             CCcccEEEccCCCCCCCchhhhhcCCC-CCEEEcCCCCCCCCcccc-cCc---cCccEEEcccCCCCCCCchhhc-----
Q 005361          234 WKKIQKLHIQGSSLEGPIPASISALTS-LTDLRISDLKGSESAFPK-LDK---MNLKTLILTKCLIHGEIPDYIG-----  303 (700)
Q Consensus       234 l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~-l~~---~~L~~L~L~~n~l~~~~p~~~~-----  303 (700)
                      +++|+.|+|++|.+. .+|..+..+++ |+.|++++|.+..  +|. +..   ++|+.|++++|.+++.+|..+.     
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            999999999999999 78888999999 9999999988873  343 333   3899999999999999998888     


Q ss_pred             --CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc----------CCCeeeeecCcccccCCCC
Q 005361          304 --DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN----------SNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       304 --~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~----------~l~~L~ls~N~l~~~~p~~  371 (700)
                        .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|...+.          +++.|+|++|.++ .+|..
T Consensus       429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence              7889999999999999665666778999999999999999 88887665          7899999999998 67765


Q ss_pred             CC-CCCCCccceecccCCCCCCCC
Q 005361          372 IE-CPRGSVNLVESYSSPRNKLDK  394 (700)
Q Consensus       372 ~~-C~~~~~~~~~~~~~~~~~~~~  394 (700)
                      +. ..   ..-++.+....|.+..
T Consensus       507 ~~~~~---l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          507 FRATT---LPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             GSTTT---CTTCCEEECCSSCCSS
T ss_pred             hhhcc---CCCcCEEECCCCCCCC
Confidence            52 12   2335556666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=307.67  Aligned_cols=227  Identities=19%  Similarity=0.178  Sum_probs=142.9

Q ss_pred             ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCC
Q 005361          183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT  262 (700)
Q Consensus       183 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  262 (700)
                      |..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  365 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ  365 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred             hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence            33444555555555555544455555555566666665655555555566666666666666666555555566666666


Q ss_pred             EEEcCCCCCCCCcc-----------------c-----------------------ccCc-cCccEEEcccCCCCCC----
Q 005361          263 DLRISDLKGSESAF-----------------P-----------------------KLDK-MNLKTLILTKCLIHGE----  297 (700)
Q Consensus       263 ~L~l~~n~~~~~~~-----------------~-----------------------~l~~-~~L~~L~L~~n~l~~~----  297 (700)
                      .|++++|.+.....                 |                       .+.. ++|+.|+|++|++++.    
T Consensus       366 ~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             EEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             EEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            66666655432110                 0                       0001 3455555555555422    


Q ss_pred             --------------------------CchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361          298 --------------------------IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF  351 (700)
Q Consensus       298 --------------------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~  351 (700)
                                                .+..|..+++|+.|+|++|+|++.+|..|..+++|+.|+|++|++++..|..+.
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred             ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence                                      123355566777777777777777777788889999999999999866666556


Q ss_pred             cCCCeeeeecCcccccCCC-------------CCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361          352 NSNKNVDISLNNFTWESSD-------------PIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH  413 (700)
Q Consensus       352 ~~l~~L~ls~N~l~~~~p~-------------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~  413 (700)
                      ++++.|+|++|.+++..|.             +|.|+|...||..|+...+..+..    ......|..|....+
T Consensus       526 ~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~----~~~~~~C~~p~~~~g  596 (844)
T 3j0a_A          526 ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG----PPADIYCVYPDSFSG  596 (844)
T ss_dssp             SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCC----CGGGCCCSSCSSSCS
T ss_pred             ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCccccc----ccccCccCCchhhCC
Confidence            7889999999999988774             688999999999998755433322    235567887765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=7e-30  Score=285.47  Aligned_cols=181  Identities=20%  Similarity=0.282  Sum_probs=100.4

Q ss_pred             CCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC--CchhhhhcCCCCCEEEcCCCCCCC-CcccccCc-cCccE
Q 005361          211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG--PIPASISALTSLTDLRISDLKGSE-SAFPKLDK-MNLKT  286 (700)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~-~~L~~  286 (700)
                      ++|++|++++|.+++..|..+..+++|+.|++++|.+.+  .+|..+..+++|+.|++++|.+.. .+...+.. ++|+.
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            344444444444444344444444444444444444443  233344444455555555444433 22112233 45555


Q ss_pred             EEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCc
Q 005361          287 LILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNN  363 (700)
Q Consensus       287 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~  363 (700)
                      |+|++|.+++..|..+.  ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++ .+|...   +++++.|++++|+
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            55555555544444332  56777777777776 56666667777788888877777 566542   2356777888774


Q ss_pred             ccccCCCCCCCCCCCccc-eecccCCCCCCCCcccccccCCCCCCCCC
Q 005361          364 FTWESSDPIECPRGSVNL-VESYSSPRNKLDKVHPCLRQNFPCSAPAD  410 (700)
Q Consensus       364 l~~~~p~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~c~~p~~  410 (700)
                      +        .|+|...|+ ..|+......       ...+..|..|..
T Consensus       480 ~--------~c~c~~~~~~~~~~~~~~~~-------~~~~~~C~~p~~  512 (520)
T 2z7x_B          480 W--------DCSCPRIDYLSRWLNKNSQK-------EQGSAKCSGSGK  512 (520)
T ss_dssp             B--------CCCHHHHHHHHHHHHHTTTT-------EESCCBBTTTCC
T ss_pred             C--------cccCCchHHHHHHHHhcccc-------CCCCCCcCCccc
Confidence            4        499988888 7787655332       235667877743

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5e-30  Score=275.73  Aligned_cols=269  Identities=18%  Similarity=0.207  Sum_probs=181.6

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|+++++.++...+..|..+++|++|+|++|.+.+..+..+..++ |++|++++|.+++..|..|.++++|++|+|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            5788899999988877666788999999999999999888888888888 999999999999888888899999999999


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCC----------------
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW----------------  234 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l----------------  234 (700)
                      ++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+                
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence            9999985544557889999999999999987778888999999999999998875432222221                


Q ss_pred             ---------------------CcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccC
Q 005361          235 ---------------------KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKC  292 (700)
Q Consensus       235 ---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n  292 (700)
                                           ++|+.|++++|.+++.  ..+..+++|+.|++++|.+.......+.. ++|+.|+|++|
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence                                 1233444444444422  23455555555555555444433333333 55555555555


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccc
Q 005361          293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT  365 (700)
Q Consensus       293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~  365 (700)
                      ++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|...+++++.|++++|++.
T Consensus       283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCCCCTTCCCSEEECCSSCEE
T ss_pred             cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeCchhhccCCEEEcCCCCcc
Confidence            5553 3333445555555555555555 34444555555555555555555 334334445555666655433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.8e-29  Score=286.56  Aligned_cols=269  Identities=18%  Similarity=0.207  Sum_probs=180.8

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.++++++.+....+..|..+++|++|+|++|.+.+..+..|..++ |++|+|++|.+++..|..|+++++|++|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            4678888998888877777788899999999999999988888888888 999999999999888888899999999999


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCC----------------
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW----------------  234 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l----------------  234 (700)
                      ++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++.....+..+                
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence            9999986655667889999999999999998888889999999999999998876533322221                


Q ss_pred             ---------------------CcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccC
Q 005361          235 ---------------------KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKC  292 (700)
Q Consensus       235 ---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n  292 (700)
                                           ++|+.|+|++|.+++  +..+..+++|+.|++++|.+.......+.. ++|+.|+|++|
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  288 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  288 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred             chhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence                                 123334444444432  234455555555555555444433333333 55555555555


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccc
Q 005361          293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT  365 (700)
Q Consensus       293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~  365 (700)
                      .+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|...++.++.|++++|++.
T Consensus       289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          289 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCCCCTTCCCSEEECCSSCEE
T ss_pred             CCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-CcChhhcCCCCEEEeeCCCCC
Confidence            5553 3334444555555555555555 34444555555555555555555 233333445555555555433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=7.8e-30  Score=266.96  Aligned_cols=270  Identities=20%  Similarity=0.301  Sum_probs=200.4

Q ss_pred             hhcCCCCHHHHHHHHHHHHhcCC------CCC----CCCCCCCCCCCCCcccCCCCCCCCCCeeeCCC------CCcCcE
Q 005361           31 ATANKLHAEEVKALKQIGRKLGK------KDW----NFGVDPCSQKGNWELSSDDKKGFESNVTCDCS------SATCHV   94 (700)
Q Consensus        31 ~~~~~~~~~e~~al~~l~~~~~~------~~w----~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~------~~~~~v   94 (700)
                      ++.+..-.+|++||..+++.+..      ..|    ....++|    .|           .|+.|+..      ....+|
T Consensus        19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~----~~-----------~g~~~~~~~~~l~~~~~~~l   83 (328)
T 4fcg_A           19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE----TR-----------TGRALKATADLLEDATQPGR   83 (328)
T ss_dssp             CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC----CS-----------HHHHHHHHHHHHHHHTSTTC
T ss_pred             eeccccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc----cc-----------CCcchhhhHHHHhcccccce
Confidence            34445567799999999987631      235    3345566    56           67777421      124678


Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN  173 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  173 (700)
                      +.|+|+++.++ .+|..+.++++|++|+|++|.++ .+|..+..++ |++|+|++|.++ .+|..+.++++|++|+|++|
T Consensus        84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred             eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence            99999999988 66777888999999999999888 6777777777 888888888888 67878888888888888888


Q ss_pred             cCCCCCCccccC---------CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccC
Q 005361          174 LFTGSIPPDIRK---------LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQG  244 (700)
Q Consensus       174 ~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  244 (700)
                      ++.+.+|..+..         +++|++|++++|.++ .+|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence            887788876654         777777777777777 666667777777777777777774 444566777777777777


Q ss_pred             CCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChh
Q 005361          245 SSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT  324 (700)
Q Consensus       245 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  324 (700)
                      |.+.+.+|..+..+++|+.|                       +|++|.+.+.+|..+..+++|+.|+|++|++.+.+|.
T Consensus       239 n~~~~~~p~~~~~l~~L~~L-----------------------~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRL-----------------------ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEE-----------------------ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CcchhhhHHHhcCCCCCCEE-----------------------ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            77666666666555555544                       4455666667787888888888888888888888888


Q ss_pred             hHhcCCCCCEEEccCCcCC
Q 005361          325 TFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~N~l~  343 (700)
                      .+..+++|+.+++..|.+.
T Consensus       296 ~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          296 LIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGGSCTTCEEECCGGGSC
T ss_pred             HHhhccCceEEeCCHHHHH
Confidence            8888888888888877665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=273.72  Aligned_cols=288  Identities=17%  Similarity=0.191  Sum_probs=209.2

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN  173 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  173 (700)
                      ..++..+..++ .+|..+.  ++++.|+|++|.+.+..+..|..++ |++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            34555666666 3444333  6788888888888877777777777 888888888888777777888888888888888


Q ss_pred             cCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      +++...+..|..+++|++|+|++|.++...+..|..+++|++|+|++|. +....+..|..+++|+.|+|++|.++. +|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence            8886656677788888888888888876666677777888888887743 333333456667777777777776652 22


Q ss_pred             hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCC
Q 005361          253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT  332 (700)
Q Consensus       253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  332 (700)
                       .+..+                       .+|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus       202 -~~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          202 -NLTPL-----------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             -CCTTC-----------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             -ccCCC-----------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence             12222                       567777788888888888889999999999999999998888889999999


Q ss_pred             CEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCC
Q 005361          333 NFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPA  409 (700)
Q Consensus       333 ~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~  409 (700)
                      +.|+|++|++++ +|...+   ++++.|+|++|+        |.|+|...|+..|+.......      ......|..|.
T Consensus       258 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np--------~~CdC~l~~l~~~~~~~~~~~------~~~~~~C~~P~  322 (440)
T 3zyj_A          258 VEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNP--------WNCNCDILWLSWWIKDMAPSN------TACCARCNTPP  322 (440)
T ss_dssp             CEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSC--------EECSSTTHHHHHHHHTTSCSS------CSCCCBEEEST
T ss_pred             CEEECCCCCCCc-cChhHhccccCCCEEEcCCCC--------ccCCCCchHHHHHHHhccccC------CccccCCCChh
Confidence            999999999984 444433   478899999994        459999999999987542211      12345688887


Q ss_pred             CCcceeeE------EeeCCcce
Q 005361          410 DQYHYTLH------INCGGAKI  425 (700)
Q Consensus       410 ~~~~~~~~------~~c~~~~~  425 (700)
                      ..++..+.      ..|..+.+
T Consensus       323 ~l~g~~l~~l~~~~~~C~~P~i  344 (440)
T 3zyj_A          323 NLKGRYIGELDQNYFTCYAPVI  344 (440)
T ss_dssp             TTTTCBCC----CCSCCCCCCE
T ss_pred             HhcCccHhHhhhhhccCCCCcc
Confidence            76655432      34655544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=269.21  Aligned_cols=283  Identities=18%  Similarity=0.202  Sum_probs=181.6

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|++++|.+++..+..|.++++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|.++++|++|+|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            4677888888877776666777788888888888877777677777776 888888888877655555777788888888


Q ss_pred             cCCcCCCCCC-ccccCCCCccEEEeeec-CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          171 EGNLFTGSIP-PDIRKLINLQKLILSSN-SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       171 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      ++|++....+ ..|..+++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            8887774333 36777788888888877 455555667777778888888888777776777777778888888877776


Q ss_pred             CCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC----CChh
Q 005361          249 GPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG----GIPT  324 (700)
Q Consensus       249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~  324 (700)
                      ......+..+++|+.|++++|.+....+..+..                    ....+.++.++|+++.+++    .+|.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------GETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             cchhhhhhhcccccEEECCCCcccccccccccc--------------------ccccchhhccccccccccCcchhhhHH
Confidence            433333445667777766665554433222110                    1123445555565555553    2455


Q ss_pred             hHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCC-CccceecccCCCCCCCCcccccc
Q 005361          325 TFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRG-SVNLVESYSSPRNKLDKVHPCLR  400 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~-~~~~~~~~~~~~~~~~~~~~~~~  400 (700)
                      .+..+++|+.|+|++|+++ .+|..++   ++++.|++++|++.        |+|. ..++..|+......+       .
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~--------~~~~~l~~l~~~~~~~~~~~-------~  335 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD--------CSCPRIDYLSRWLNKNSQKE-------Q  335 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC--------CCHHHHHHHHHHHHHTTTTE-------E
T ss_pred             HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc--------CcCCCcHHHHHHHHhccccC-------C
Confidence            5666666666666666666 4555432   35566666666433        7774 444556655443322       2


Q ss_pred             cCCCCCCCCC
Q 005361          401 QNFPCSAPAD  410 (700)
Q Consensus       401 ~~~~c~~p~~  410 (700)
                      ....|..|..
T Consensus       336 ~~~~C~~p~~  345 (353)
T 2z80_A          336 GSAKCSGSGK  345 (353)
T ss_dssp             SCCBBTTTCC
T ss_pred             CCcccCCCCC
Confidence            4556666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.9e-29  Score=284.05  Aligned_cols=178  Identities=18%  Similarity=0.147  Sum_probs=155.6

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      .+.+++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|..++ |++|+|++|.+++..|..|.++++|++|
T Consensus        31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            456899999999999999899999999999999999999999899999998 9999999999998889999999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc--EEEccCCC
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ--KLHIQGSS  246 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~  246 (700)
                      +|++|.+++..+..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+++|+  .|++++|.
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            9999999977678899999999999999999975544555699999999999999988888999999999  89999999


Q ss_pred             CCCCchhhhhcCCCCCEEEcCC
Q 005361          247 LEGPIPASISALTSLTDLRISD  268 (700)
Q Consensus       247 l~~~~~~~~~~l~~L~~L~l~~  268 (700)
                      +.+..|..+.. .+|+.|++++
T Consensus       191 l~~~~~~~~~~-~~L~~L~l~~  211 (606)
T 3t6q_A          191 IAGIEPGAFDS-AVFQSLNFGG  211 (606)
T ss_dssp             CCEECTTTTTT-CEEEEEECTT
T ss_pred             cCccChhHhhh-ccccccccCC
Confidence            98766655543 3444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.9e-29  Score=276.68  Aligned_cols=276  Identities=15%  Similarity=0.162  Sum_probs=216.0

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL  174 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  174 (700)
                      .++.++..++. +|..+.  ++|++|+|++|.+++..+..|..++ |++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus        58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            34455555553 444332  6899999999999988888888888 9999999999998888889999999999999999


Q ss_pred             CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC-cCCCCChhhhcCCCcccEEEccCCCCCCCchh
Q 005361          175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN-NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPA  253 (700)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  253 (700)
                      ++...+..|..+++|++|+|++|.++...+..|..+++|+.|++++| .+....+..+..+++|+.|+|++|.+++. | 
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence            99777777899999999999999999777778999999999999984 45544455788999999999999998843 3 


Q ss_pred             hhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCC
Q 005361          254 SISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN  333 (700)
Q Consensus       254 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  333 (700)
                      .+..++                       +|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+
T Consensus       213 ~~~~l~-----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          213 NLTPLV-----------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             CCTTCT-----------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccccc-----------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            233333                       556666777888878888899999999999999999988888899999999


Q ss_pred             EEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCC
Q 005361          334 FMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPAD  410 (700)
Q Consensus       334 ~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~  410 (700)
                      .|+|++|++++ +|...   +++++.|+|++|        +|.|+|...|+..|+.......      ......|..|..
T Consensus       270 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N--------p~~CdC~~~~l~~~l~~~~~~~------~~~~~~C~~P~~  334 (452)
T 3zyi_A          270 ELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN--------PWNCDCDILWLAWWLREYIPTN------STCCGRCHAPMH  334 (452)
T ss_dssp             EEECCSSCCSC-CCTTSSTTCTTCCEEECCSS--------CEECSTTTHHHHHHHHHHC---------CCSSCBEEESTT
T ss_pred             EEECCCCcCCc-cChHHhccccCCCEEEccCC--------CcCCCCCchHHHHHHHHhCccC------CccCcEeCCchH
Confidence            99999999984 44433   347889999999        4559999999998876432111      112346777766


Q ss_pred             Ccce
Q 005361          411 QYHY  414 (700)
Q Consensus       411 ~~~~  414 (700)
                      .++.
T Consensus       335 l~g~  338 (452)
T 3zyi_A          335 MRGR  338 (452)
T ss_dssp             TTTC
T ss_pred             hccc
Confidence            5544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=272.64  Aligned_cols=293  Identities=18%  Similarity=0.186  Sum_probs=235.8

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL  174 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  174 (700)
                      .++.+++.++. +|..+  .++|+.|+|++|.+++..+..|..++ |++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus        15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            45556666663 44433  36899999999999998889999998 9999999999998889999999999999999999


Q ss_pred             CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhh
Q 005361          175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPAS  254 (700)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  254 (700)
                      +....+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            99766677899999999999999999888899999999999999999999888889999999999999999999888888


Q ss_pred             hhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCC
Q 005361          255 ISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN  333 (700)
Q Consensus       255 ~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  333 (700)
                      +..+++|+.|++++|.+.......+.. ++|+.|++++|.+.+.+|.......+|+.|+|++|++++..+..+..+++|+
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence            999999999999998887655445555 7888888888777666666555556788888888888766556777888888


Q ss_pred             EEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCc
Q 005361          334 FMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKV  395 (700)
Q Consensus       334 ~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~  395 (700)
                      .|+|++|++++..+..+  +.+++.|+|++|.+++..|..+ ..+   .-++.+....|.+...
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l---~~L~~L~L~~N~l~~~  311 (477)
T 2id5_A          252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGL---NYLRVLNVSGNQLTTL  311 (477)
T ss_dssp             EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB-TTC---TTCCEEECCSSCCSCC
T ss_pred             eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh-cCc---ccCCEEECCCCcCcee
Confidence            88888888774444333  2467788888888777766655 222   2344455555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=4.8e-29  Score=281.97  Aligned_cols=101  Identities=18%  Similarity=0.281  Sum_probs=58.9

Q ss_pred             cCccEEEcccCCCC-CCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeee
Q 005361          282 MNLKTLILTKCLIH-GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVD  358 (700)
Q Consensus       282 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~  358 (700)
                      ++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..|..+  +++++.|+
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            44555555555554 3445555555666666666666665555566666666666666666664444333  23556666


Q ss_pred             eecCcccccCCCCCCCCCCCccce-ecccCCCC
Q 005361          359 ISLNNFTWESSDPIECPRGSVNLV-ESYSSPRN  390 (700)
Q Consensus       359 ls~N~l~~~~p~~~~C~~~~~~~~-~~~~~~~~  390 (700)
                      +++|+        |.|+|...+++ .|+.....
T Consensus       525 l~~N~--------~~~~~~~~~~~~~wl~~~~~  549 (570)
T 2z63_A          525 LHTNP--------WDCSCPRIDYLSRWLNKNSQ  549 (570)
T ss_dssp             CCSSC--------BCCCTTTTHHHHHHHHHTGG
T ss_pred             ecCCc--------ccCCCcchHHHHHHHHhccc
Confidence            66664        44888888877 78766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=7.1e-29  Score=279.86  Aligned_cols=147  Identities=17%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             cCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc-cc-ccCc-cCccEEEcccCCCCCCCch-hhcCC--
Q 005361          232 GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA-FP-KLDK-MNLKTLILTKCLIHGEIPD-YIGDM--  305 (700)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~-~l~~-~~L~~L~L~~n~l~~~~p~-~~~~l--  305 (700)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|.+.... .+ .+.. ++|+.|+|++|.+++.+|. .+..+  
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            34445555555555555545555555555555555555444321 11 1222 4455555555555442222 23333  


Q ss_pred             --------------------CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchh-h--hcCCCeeeeecC
Q 005361          306 --------------------TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY-I--FNSNKNVDISLN  362 (700)
Q Consensus       306 --------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~--~~~l~~L~ls~N  362 (700)
                                          ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++ .+|.. +  +++++.|++++|
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSC
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCC
Confidence                                45666666666666 44544456677777777777776 45554 2  235666777777


Q ss_pred             cccccCCCCCCCCCCCcccee-cccCC
Q 005361          363 NFTWESSDPIECPRGSVNLVE-SYSSP  388 (700)
Q Consensus       363 ~l~~~~p~~~~C~~~~~~~~~-~~~~~  388 (700)
                              +|.|+|...|++. |....
T Consensus       508 --------~~~c~c~~~~~~~~~~~~~  526 (562)
T 3a79_B          508 --------PWDCTCPGIRYLSEWINKH  526 (562)
T ss_dssp             --------CBCCCHHHHHHHHHHHHHT
T ss_pred             --------CcCCCcchHHHHHHHHHhc
Confidence                    4559998888876 65544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.6e-28  Score=277.08  Aligned_cols=137  Identities=21%  Similarity=0.206  Sum_probs=115.2

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      +.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..++ |++|++++|.++ .+|..  .+++|++|+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            36799999999999988888999999999999999999998899999988 999999999998 56655  899999999


Q ss_pred             ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCC--cEEEeecCcC--CCCChhhhcC
Q 005361          170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL--NDLRISDNNF--SGKIPEFIGK  233 (700)
Q Consensus       170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~  233 (700)
                      |++|++++ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~  193 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI  193 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence            99999986 3468899999999999999998853   34445555  9999998888  5555544443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=2.6e-28  Score=283.67  Aligned_cols=274  Identities=18%  Similarity=0.241  Sum_probs=183.8

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCC-CCC-Ccccccccc-------c-ccEEEccCCCCCCCCch--h
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC-LTG-SFSPQWASL-------Q-LVELSVMGNRLSGPFPK--V  158 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~-L~~L~L~~n~l~~~~p~--~  158 (700)
                      ..+++.|+|++|.+.+.+|..|.++++|+.|+|++|. +++ .+|..+..+       + |++|+|++|.++ .+|.  .
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~  568 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS  568 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence            4579999999999999999999999999999999998 887 677665544       3 999999999999 7887  8


Q ss_pred             cCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCC-CcEEEeecCcCCCCChhhhcCCCc-
Q 005361          159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN-LNDLRISDNNFSGKIPEFIGKWKK-  236 (700)
Q Consensus       159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~-  236 (700)
                      +.++++|++|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |+.|+|++|.++ .+|..+..++. 
T Consensus       569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~  644 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY  644 (876)
T ss_dssp             HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred             hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence            999999999999999998 777 8889999999999999988 78888888888 999999888887 66666555432 


Q ss_pred             -ccEEEccCCCCCCCch----------------------------h-hhhcCCCCCEEEcCCCCCCCCcccccCc-----
Q 005361          237 -IQKLHIQGSSLEGPIP----------------------------A-SISALTSLTDLRISDLKGSESAFPKLDK-----  281 (700)
Q Consensus       237 -L~~L~L~~n~l~~~~~----------------------------~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~-----  281 (700)
                       |+.|+|++|.+.+.+|                            . .+..+++|+.|++++|.+...+...+..     
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY  724 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence             6666666666554333                            2 2234455555555554444222111111     


Q ss_pred             ---cCccEEEcccCCCCCCCchhhc--CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccC------CcCCCCCchhh
Q 005361          282 ---MNLKTLILTKCLIHGEIPDYIG--DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG------NKLTGPVPKYI  350 (700)
Q Consensus       282 ---~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~ip~~~  350 (700)
                         ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|+|++ +|..+..+++|+.|+|++      |++.+.+|..+
T Consensus       725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence               14555555555555 3444443  45555555555555554 444455555555555543      44445555444


Q ss_pred             h--cCCCeeeeecCcccccCCCCC
Q 005361          351 F--NSNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       351 ~--~~l~~L~ls~N~l~~~~p~~~  372 (700)
                      .  ++|+.|+|++|.+ +.+|..+
T Consensus       803 ~~L~~L~~L~Ls~N~L-~~Ip~~l  825 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI-RKVDEKL  825 (876)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             hcCCCCCEEECCCCCC-CccCHhh
Confidence            2  2455555555555 4444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=2.1e-28  Score=275.35  Aligned_cols=297  Identities=19%  Similarity=0.195  Sum_probs=227.8

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..++ |++|++++|.+++..|..|.++++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            45899999999999998899999999999999999999998889999998 99999999999988888899999999999


Q ss_pred             ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      |++|.+++ ..|..+.++++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..|..+..+++|+.|+++.|.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            99999986 356789999999999999998544554 6899999999999999999988898898888888888888887


Q ss_pred             CCCchhh-hhcCCCCCEEEcCCCCCCCCcccc---c--------------------------------------------
Q 005361          248 EGPIPAS-ISALTSLTDLRISDLKGSESAFPK---L--------------------------------------------  279 (700)
Q Consensus       248 ~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~---l--------------------------------------------  279 (700)
                      .. +|.. +..+++|+.|++++|.+....+..   .                                            
T Consensus       185 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          185 AF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             TT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             cc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            63 4443 456788888888877665431100   0                                            


Q ss_pred             -------------------------------------------Cc-cCccEEEcccCCCCCCCchhh-cCCCCCCEEecc
Q 005361          280 -------------------------------------------DK-MNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLS  314 (700)
Q Consensus       280 -------------------------------------------~~-~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls  314 (700)
                                                                 .. .+|+.|++++|.++ .+|..+ ..+++|+.|+|+
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence                                                       00 24666666666666 344443 567888888888


Q ss_pred             CCCCCCCChhh---HhcCCCCCEEEccCCcCCCCCc--hhh--hcCCCeeeeecCcccccCCCCCCCCCCCccceecccC
Q 005361          315 FNNLTGGIPTT---FEKLAKTNFMYLTGNKLTGPVP--KYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSS  387 (700)
Q Consensus       315 ~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~ip--~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~  387 (700)
                      +|++++.+|..   +..+++|+.|+|++|++++..+  ..+  +++++.|++++|.++ .+|..+.    ...-++.+..
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~----~~~~L~~L~L  417 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ----WPEKMRFLNL  417 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC----CCTTCCEEEC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc----ccccccEEEC
Confidence            88888665433   5677888888888888874322  112  346788888888887 4555431    1223455555


Q ss_pred             CCCCCCC
Q 005361          388 PRNKLDK  394 (700)
Q Consensus       388 ~~~~~~~  394 (700)
                      ..|.+..
T Consensus       418 s~N~l~~  424 (549)
T 2z81_A          418 SSTGIRV  424 (549)
T ss_dssp             TTSCCSC
T ss_pred             CCCCccc
Confidence            5555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=7.4e-29  Score=272.33  Aligned_cols=257  Identities=16%  Similarity=0.175  Sum_probs=186.6

Q ss_pred             CcEEEEEecCCCCCCcC-chhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchh--cCCCCCCCE
Q 005361           92 CHVVTIALKAQNLTGTL-PTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKV--LTNITTLKN  167 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~--~~~l~~L~~  167 (700)
                      .+++.|+|++|.+.+.+ +..|.++++|++|+|++|.+.+..|..+..++ |++|++++|.+++..+..  |..+++|++
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  133 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM  133 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence            35566666666555333 34455666666666666666555555555555 666666666655433333  555566666


Q ss_pred             EEccCCcCCCCCCcc-ccCCCCccEEEeeecCCCCcCchhhhCC------------------------------------
Q 005361          168 LSIEGNLFTGSIPPD-IRKLINLQKLILSSNSFTGELPAELTKL------------------------------------  210 (700)
Q Consensus       168 L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------------------------  210 (700)
                      |+|++|.+.+..|.. +.++++|++|++++|.+++..+..+..+                                    
T Consensus       134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  213 (455)
T 3v47_A          134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS  213 (455)
T ss_dssp             EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred             EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence            666666655544443 4555555555555555554433322211                                    


Q ss_pred             -------------------------------------------------------------CCCcEEEeecCcCCCCChh
Q 005361          211 -------------------------------------------------------------TNLNDLRISDNNFSGKIPE  229 (700)
Q Consensus       211 -------------------------------------------------------------~~L~~L~L~~n~l~~~~~~  229 (700)
                                                                                   ++|+.|++++|.+++..|.
T Consensus       214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence                                                                         4566666666666666778


Q ss_pred             hhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCC
Q 005361          230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKL  308 (700)
Q Consensus       230 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L  308 (700)
                      .+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|.+.......+.. ++|++|+|++|++++..|..+..+++|
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence            8899999999999999999888889999999999999999886655555666 899999999999998889999999999


Q ss_pred             CEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCch
Q 005361          309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK  348 (700)
Q Consensus       309 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~  348 (700)
                      ++|+|++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus       374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999999987777889999999999999999998883

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=8.2e-29  Score=257.61  Aligned_cols=230  Identities=26%  Similarity=0.417  Sum_probs=148.9

Q ss_pred             ccEEEccCCCCCC--CCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEE
Q 005361          141 LVELSVMGNRLSG--PFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR  217 (700)
Q Consensus       141 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  217 (700)
                      ++.|+|++|.+++  .+|..+.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            3344444444444  4444455555555555552 444444555555555555555555555544555555555555555


Q ss_pred             eecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCC-CCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCC
Q 005361          218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALT-SLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG  296 (700)
Q Consensus       218 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~  296 (700)
                      +++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.......+....|+.|+|++|.+++
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG  211 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccC
Confidence            555555545555555555555555555555544555555554 5555555554443222222333237777788889988


Q ss_pred             CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361          297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~  371 (700)
                      .+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+.  ++++.|+|++|+++|.+|..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            8999999999999999999999976665 78899999999999999999998875  47999999999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=3.3e-28  Score=287.03  Aligned_cols=282  Identities=16%  Similarity=0.170  Sum_probs=218.5

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCc-cccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSF-SPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      +.+++.|+|++|.+++..+..|.++++|++|+|++|...+.+ |..|..++ |++|+|++|.+.+..|..|.++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            568999999999999999999999999999999999666555 78899998 9999999999998889999999999999


Q ss_pred             EccCCcCCCCCCcc--ccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCC--CcccEEEcc
Q 005361          169 SIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKW--KKIQKLHIQ  243 (700)
Q Consensus       169 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~  243 (700)
                      +|++|.+++.+|..  |.++++|++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999999766665  8999999999999999987654 679999999999999999998888877766  778888888


Q ss_pred             CCCCCCCchhhhhcCCC------CCEEEcCCCCCCCCcccc---------------------------------------
Q 005361          244 GSSLEGPIPASISALTS------LTDLRISDLKGSESAFPK---------------------------------------  278 (700)
Q Consensus       244 ~n~l~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~---------------------------------------  278 (700)
                      .|.+.+..|..+..+.+      |+.|++++|.+.......                                       
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            88877766665555544      777777776432211100                                       


Q ss_pred             cCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCe
Q 005361          279 LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKN  356 (700)
Q Consensus       279 l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~  356 (700)
                      +...+|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.  ++++.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence            0114677777777777766666777777777777777777766666777777777777777777655554442  35667


Q ss_pred             eeeecCcccccCCCCC
Q 005361          357 VDISLNNFTWESSDPI  372 (700)
Q Consensus       357 L~ls~N~l~~~~p~~~  372 (700)
                      |++++|.+.+..+..+
T Consensus       343 L~L~~N~i~~~~~~~~  358 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTF  358 (844)
T ss_dssp             EECCSCCCCCCCSSCS
T ss_pred             EECCCCCCCccChhhh
Confidence            7777777665555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.3e-27  Score=276.18  Aligned_cols=282  Identities=19%  Similarity=0.209  Sum_probs=235.9

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      +.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..++ |++|++++|.+++..+..|.++++|++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            46899999999999998888999999999999999999999999999998 99999999999977767899999999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhc--CCCcccEEEccCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG--KWKKIQKLHIQGSSL  247 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l  247 (700)
                      |++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.  .+++|+.|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            999999987778899999999999999999988888899999999999999999988877665  568999999999999


Q ss_pred             CCCchhhhhcCC---------------------------CCCEEEcCCCCCCCCcccccCc---cCccEEEcccCCCCCC
Q 005361          248 EGPIPASISALT---------------------------SLTDLRISDLKGSESAFPKLDK---MNLKTLILTKCLIHGE  297 (700)
Q Consensus       248 ~~~~~~~~~~l~---------------------------~L~~L~l~~n~~~~~~~~~l~~---~~L~~L~L~~n~l~~~  297 (700)
                      .+..|..+..+.                           +|+.|++++|.+.......+..   ++|+.|+|++|.+++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            988887776654                           4566666665554433333333   4589999999998888


Q ss_pred             CchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCC-----Cch----hh--hcCCCeeeeecCcccc
Q 005361          298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP-----VPK----YI--FNSNKNVDISLNNFTW  366 (700)
Q Consensus       298 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----ip~----~~--~~~l~~L~ls~N~l~~  366 (700)
                      .|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|...+.     +|.    .+  +++++.|++++|.+++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            888888889999999999998888888888888888888888765542     221    11  3467888888888888


Q ss_pred             cCCCCC
Q 005361          367 ESSDPI  372 (700)
Q Consensus       367 ~~p~~~  372 (700)
                      ..|..+
T Consensus       344 ~~~~~~  349 (680)
T 1ziw_A          344 IKSNMF  349 (680)
T ss_dssp             CCTTTT
T ss_pred             CChhHh
Confidence            766655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.1e-27  Score=251.43  Aligned_cols=263  Identities=20%  Similarity=0.266  Sum_probs=212.4

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      +++.++++++.++. +|..+  .++|+.|+|++|.+++..+..+..++ |++|++++|.+++..|..|.++++|++|+|+
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            56778888887764 44433  26889999999999988877888888 9999999999988888889999999999999


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC--CChhhhcCCCcccEEEccCCCCCC
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG--KIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.++.
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            99988 5565554  789999999999987777788899999999999998863  567778889999999999998884


Q ss_pred             CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                       +|..+.  ++|+.|++++|.+.......+.. ++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence             444332  78999999988877665555666 88999999999998877778888899999999999998 67778888


Q ss_pred             CCCCCEEEccCCcCCCCCchhhh--------cCCCeeeeecCccc
Q 005361          329 LAKTNFMYLTGNKLTGPVPKYIF--------NSNKNVDISLNNFT  365 (700)
Q Consensus       329 l~~L~~L~L~~N~l~~~ip~~~~--------~~l~~L~ls~N~l~  365 (700)
                      +++|+.|+|++|++++..+..+.        ..++.|++++|++.
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            99999999999999854433332        34668899999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.3e-28  Score=270.23  Aligned_cols=274  Identities=16%  Similarity=0.173  Sum_probs=202.3

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..++ |++|+|++|.++ .+|..  .+++|++|+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            36899999999999998889999999999999999999998899999998 999999999999 56665  899999999


Q ss_pred             ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCC--cEEEeecCcC--CCCChhhhcCCC---------
Q 005361          170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL--NDLRISDNNF--SGKIPEFIGKWK---------  235 (700)
Q Consensus       170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~---------  235 (700)
                      |++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  +.|++++|.+  .+..|..+..+.         
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            99999997 478999999999999999999875   345666666  8888888777  444454444322         


Q ss_pred             --------------------------------------------------------------------------cccEEE
Q 005361          236 --------------------------------------------------------------------------KIQKLH  241 (700)
Q Consensus       236 --------------------------------------------------------------------------~L~~L~  241 (700)
                                                                                                +|+.|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                                                                                      455556


Q ss_pred             ccCCCCCCCchhhh-----hcCCCCCEEEcCC--------------------------CCCCCCcccccCc-cCccEEEc
Q 005361          242 IQGSSLEGPIPASI-----SALTSLTDLRISD--------------------------LKGSESAFPKLDK-MNLKTLIL  289 (700)
Q Consensus       242 L~~n~l~~~~~~~~-----~~l~~L~~L~l~~--------------------------n~~~~~~~~~l~~-~~L~~L~L  289 (700)
                      +++|.+.+.+|..+     ..+++|+.+++++                          |.+....++  .. ++|++|++
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~l~~L~~L~L  331 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP--SKISPFLHLDF  331 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC--SSCCCCCEEEC
T ss_pred             eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccch--hhCCcccEEEe
Confidence            66665555555544     3444333333333                          322221111  23 67778888


Q ss_pred             ccCCCCCCCchhhcCCCCCCEEeccCCCCCC--CChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcc
Q 005361          290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG--GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNF  364 (700)
Q Consensus       290 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l  364 (700)
                      ++|++++.+|..+..+++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.+|...+   ++++.|++++|.+
T Consensus       332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            8888777777777777778888888887775  4456677777788888888777765665433   4567777777777


Q ss_pred             cccCCCCC
Q 005361          365 TWESSDPI  372 (700)
Q Consensus       365 ~~~~p~~~  372 (700)
                      ++.+|..+
T Consensus       412 ~~~~~~~l  419 (520)
T 2z7x_B          412 TDTIFRCL  419 (520)
T ss_dssp             CGGGGGSC
T ss_pred             Ccchhhhh
Confidence            76665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.5e-27  Score=248.63  Aligned_cols=266  Identities=20%  Similarity=0.239  Sum_probs=227.0

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..++ |++|++++|.++ .+|..+.  ++|++|+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            45799999999999988888899999999999999999998899999988 999999999998 5565544  7999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCC--cCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTG--ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      +++|.+.+..+..|.++++|+.|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|+.|++++|.+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence            99999997777789999999999999999964  677889999999999999999984 554443  7999999999999


Q ss_pred             CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361          248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF  326 (700)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  326 (700)
                      ++..+..+..+++|+.|++++|.+.......+.. ++|++|+|++|.++ .+|..+..+++|+.|+|++|+|++..+..|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            9888899999999999999998887765555666 89999999999999 778889999999999999999998777766


Q ss_pred             hc------CCCCCEEEccCCcCCC-CCchhhhc---CCCeeeeecCc
Q 005361          327 EK------LAKTNFMYLTGNKLTG-PVPKYIFN---SNKNVDISLNN  363 (700)
Q Consensus       327 ~~------l~~L~~L~L~~N~l~~-~ip~~~~~---~l~~L~ls~N~  363 (700)
                      ..      .+.|+.|++++|.+.. .+++..+.   .++.++|++|+
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            54      3789999999999863 34433333   56788998884

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-28  Score=256.08  Aligned_cols=278  Identities=20%  Similarity=0.267  Sum_probs=192.7

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCC--CchhcCCCCCCCEEEccC
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGP--FPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~  172 (700)
                      .++.+++.++. +|..+  .++|++|+|++|.++...+..|..++ |++|++++|.++..  .+..+..+++|++|+|++
T Consensus        11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            45566666663 34333  25788888888888866666666666 77777777777632  245556677777777777


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC-C
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG-P  250 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~  250 (700)
                      |.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            7766 455566677777777777776664433 456666666666666666665555666666666666666666553 2


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCC
Q 005361          251 IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA  330 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  330 (700)
                      .|..+..+                       ++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..++
T Consensus       167 ~~~~~~~l-----------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          167 LPDIFTEL-----------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             ECSCCTTC-----------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             chhHHhhC-----------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            34444444                       4556666666777777788888899999999999999987777888899


Q ss_pred             CCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCC
Q 005361          331 KTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSA  407 (700)
Q Consensus       331 ~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  407 (700)
                      +|+.|+|++|++++..|..+.   .+++.|+|++|+++        |+|...++.+|+...+.....     ...+.|..
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~--------~~c~~~~~~~~l~~~~~~~~~-----~~~~~C~~  290 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA--------CTCEHQSFLQWIKDQRQLLVE-----VERMECAT  290 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE--------CSGGGHHHHHHHHHTGGGBSC-----GGGCBEEE
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee--------cccChHHHHHHHHhhhhhhcc-----ccccccCC
Confidence            999999999999887776653   36889999999665        999999999998755432221     24567777


Q ss_pred             CCCCcc
Q 005361          408 PADQYH  413 (700)
Q Consensus       408 p~~~~~  413 (700)
                      |....+
T Consensus       291 p~~~~g  296 (306)
T 2z66_A          291 PSDKQG  296 (306)
T ss_dssp             SGGGTT
T ss_pred             chhhCC
Confidence            655443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=8.8e-28  Score=252.27  Aligned_cols=262  Identities=22%  Similarity=0.303  Sum_probs=216.0

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      +++.++++++.++ .+|..+  .++|+.|+|++|.+.+..+..+..++ |++|++++|.+++..|..|.++++|++|+|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5778888888887 455544  36899999999999988888888888 9999999999998888899999999999999


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC--CCChhhhcCCCcccEEEccCCCCCC
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS--GKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +|.+. .+|..+.  ++|++|++++|.++...+..|..+++|++|++++|.++  +..+..+..+ +|+.|++++|.+++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            99998 5666554  79999999999999777777899999999999999986  3667777777 89999999999885


Q ss_pred             CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                       +|..+.  ++|+.|++++|.+.......+.. ++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             454443  78999999998887766566666 88999999999999888878889999999999999998 67778889


Q ss_pred             CCCCCEEEccCCcCCCCCchhhh--------cCCCeeeeecCccc
Q 005361          329 LAKTNFMYLTGNKLTGPVPKYIF--------NSNKNVDISLNNFT  365 (700)
Q Consensus       329 l~~L~~L~L~~N~l~~~ip~~~~--------~~l~~L~ls~N~l~  365 (700)
                      +++|+.|++++|++++..+..+.        ..++.|++++|++.
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            99999999999999854443332        23578899999766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.1e-27  Score=248.06  Aligned_cols=265  Identities=20%  Similarity=0.240  Sum_probs=226.2

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+..++ |++|++++|.++ .+|..+.  ++|++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence            45899999999999988888999999999999999999998899999988 999999999998 5555554  7999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCC--CcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      +++|.+....+..|..+++|+.|++++|.++  +..+..+..+ +|++|++++|.+++ +|..+.  ++|+.|++++|.+
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence            9999999777777999999999999999996  3667778888 99999999999985 555443  7899999999999


Q ss_pred             CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361          248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF  326 (700)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  326 (700)
                      ++..+..+..+++|+.|++++|.+.......+.. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..|
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            9888889999999999999999888766555666 89999999999999 778889999999999999999998777776


Q ss_pred             hc------CCCCCEEEccCCcCC--CCCchhh--hcCCCeeeeecCc
Q 005361          327 EK------LAKTNFMYLTGNKLT--GPVPKYI--FNSNKNVDISLNN  363 (700)
Q Consensus       327 ~~------l~~L~~L~L~~N~l~--~~ip~~~--~~~l~~L~ls~N~  363 (700)
                      ..      .+.|+.|++++|.+.  +..|..+  +..++.+++++|+
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            55      367999999999987  3444433  2467889998883

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2.1e-27  Score=267.30  Aligned_cols=159  Identities=21%  Similarity=0.266  Sum_probs=127.1

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCC-CCchhcCCCCCCCEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSG-PFPKVLTNITTLKNL  168 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~-~~p~~~~~l~~L~~L  168 (700)
                      ..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..++ |++|++++|.+++ ..|..+.++++|++|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            45899999999999998889999999999999999999998888899888 9999999999986 356789999999999


Q ss_pred             EccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          169 SIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       169 ~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      ++++|.+.+.+| ..|.++++|++|++++|.+++..|..+..+++|++|+++.|.+.......+..+++|+.|++++|.+
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence            999998544554 5789999999999999999988888877776666666666665422222234455566666655555


Q ss_pred             CC
Q 005361          248 EG  249 (700)
Q Consensus       248 ~~  249 (700)
                      .+
T Consensus       209 ~~  210 (549)
T 2z81_A          209 AR  210 (549)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=4.5e-26  Score=240.77  Aligned_cols=260  Identities=21%  Similarity=0.290  Sum_probs=213.9

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|++++|.+++..+  +..+++|++|++++|.++..  +.+..++ |++|++++|.+++..+  +..+++|++|+
T Consensus        65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~  138 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN  138 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred             cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence            4579999999999986544  89999999999999999864  3577777 9999999999985543  88999999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +++|.....+ ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+
T Consensus       139 l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          139 LGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             CTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence            9999766444 448899999999999999885443  8889999999999999985443  7888999999999999886


Q ss_pred             CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                      ..+  +..+++|+.|++++|.+.....  +.. ++|++|++++|.+++.  ..+..+++|+.|++++|++++.  +.+..
T Consensus       214 ~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~  285 (347)
T 4fmz_A          214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN  285 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC
Confidence            544  8888999999999987765443  555 8899999999998854  4578889999999999999864  45788


Q ss_pred             CCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCC
Q 005361          329 LAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESS  369 (700)
Q Consensus       329 l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p  369 (700)
                      +++|+.|++++|++++..|..+.  ++++.|++++|++++..|
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            89999999999999877766553  578899999998887665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=1.2e-26  Score=249.33  Aligned_cols=258  Identities=17%  Similarity=0.164  Sum_probs=215.0

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|+|++|.+++..+..|..+++|++|+|++|.+.+..+..+..++ |++|++++|.++...+..|.++++|++|+|
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            5799999999999988888999999999999999999999888899888 999999999999666666789999999999


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCC-------------------------------------CCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL-------------------------------------TNL  213 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------~~L  213 (700)
                      ++|.+.+..+..|..+++|++|++++|.+++.....+..+                                     ++|
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  228 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  228 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence            9999998888889999999999999999885432322222                                     246


Q ss_pred             cEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCC
Q 005361          214 NDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCL  293 (700)
Q Consensus       214 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~  293 (700)
                      +.|++++|.+++.  ..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+...+......++|+.|+|++|+
T Consensus       229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence            6666666666643  46888999999999999999888999999999999999998877643322223899999999999


Q ss_pred             CCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCC
Q 005361          294 IHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNK  355 (700)
Q Consensus       294 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~  355 (700)
                      ++ .+|..+..+++|+.|+|++|+++.. +  +..+++|+.|++++|+++..-...++..+.
T Consensus       307 l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~  364 (390)
T 3o6n_A          307 LL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVA  364 (390)
T ss_dssp             CC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred             ce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHH
Confidence            99 5677788899999999999999955 3  678899999999999998654444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7.2e-27  Score=239.74  Aligned_cols=223  Identities=19%  Similarity=0.235  Sum_probs=118.4

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN  173 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  173 (700)
                      +.++.+++.++. +|..+  .++|++|+|++|.+++..+..+..++ |++|++++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            566677777764 34322  45777777777777765555555555 666666666665555555566666666666666


Q ss_pred             c-CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          174 L-FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       174 ~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      . +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.++...+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            4 444444555555555555555555554444455555555555555555554444444444444444444444443222


Q ss_pred             hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCC
Q 005361          253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT  332 (700)
Q Consensus       253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  332 (700)
                      ..+..++                       +|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|
T Consensus       171 ~~~~~l~-----------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          171 RAFRGLH-----------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             TTTTTCT-----------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             HHhcCcc-----------------------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            2233222                       23333333344444445555555555555555555555444445555555


Q ss_pred             CEEEccCCcCC
Q 005361          333 NFMYLTGNKLT  343 (700)
Q Consensus       333 ~~L~L~~N~l~  343 (700)
                      +.|+|++|++.
T Consensus       228 ~~L~l~~N~~~  238 (285)
T 1ozn_A          228 QYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEeccCCCcc
Confidence            55555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.3e-25  Score=237.14  Aligned_cols=281  Identities=17%  Similarity=0.277  Sum_probs=213.4

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|+++++.+... + .+..+++|++|++++|.+++..+  +..++ |++|++++|.++. ++ .+.++++|++|++
T Consensus        44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence            4688888988888753 3 37888999999999998886554  67777 9999999998885 33 5888899999999


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      ++|.+.+. +. +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             cCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            99988843 33 7888999999999886654444 48888999999999988875544  77888999999999988854


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361          251 IPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL  329 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  329 (700)
                      .+  +..+++|+.|++++|.+.....  +.. ++|++|++++|.+++..+  +..+++|+.|+|++|.+++.  +.+..+
T Consensus       193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l  264 (347)
T 4fmz_A          193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL  264 (347)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred             cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence            33  7888899999998877665433  444 789999999999885544  77888999999999988853  467888


Q ss_pred             CCCCEEEccCCcCCCCCch-hhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcc
Q 005361          330 AKTNFMYLTGNKLTGPVPK-YIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH  396 (700)
Q Consensus       330 ~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~  396 (700)
                      ++|+.|++++|++++. +. ..+++++.|++++|.+++..|..+ +.+   .-++.+....|.+....
T Consensus       265 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l---~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGL---TNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHH-HTC---TTCSEEECCSSSCCCCG
T ss_pred             CCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHh-hcc---ccCCEEEccCCcccccc
Confidence            8999999999988854 32 234578899999998887766554 222   23445556666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3e-27  Score=245.20  Aligned_cols=265  Identities=17%  Similarity=0.224  Sum_probs=209.2

Q ss_pred             CCeeeCCCC-------CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC--ccccccccc-ccEEEccCCC
Q 005361           81 SNVTCDCSS-------ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS--FSPQWASLQ-LVELSVMGNR  150 (700)
Q Consensus        81 ~~v~C~~~~-------~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~-L~~L~L~~n~  150 (700)
                      ..+.|...+       .+.+++.|+|++|.++...+..|.++++|++|+|++|.++..  .+..+..++ |++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            456665322       345899999999999976666789999999999999999843  245555666 9999999999


Q ss_pred             CCCCCchhcCCCCCCCEEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC-CCh
Q 005361          151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIP  228 (700)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~  228 (700)
                      ++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|
T Consensus        90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            98 567779999999999999999986554 578999999999999999998888889999999999999999986 578


Q ss_pred             hhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCC
Q 005361          229 EFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKL  308 (700)
Q Consensus       229 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  308 (700)
                      ..+..+++|+.|++++|.+++..|..+..+++|+.|++++                       |.+++..+..+..+++|
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-----------------------NNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----------------------SCCSBCCSGGGTTCTTC
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-----------------------CccCccChhhccCcccC
Confidence            8899999999999999999977777777777666666555                       55655555567778888


Q ss_pred             CEEeccCCCCCCCChhhHhcCC-CCCEEEccCCcCCCCCchh----hhcCCCeeeeecCcccccCC
Q 005361          309 KNIDLSFNNLTGGIPTTFEKLA-KTNFMYLTGNKLTGPVPKY----IFNSNKNVDISLNNFTWESS  369 (700)
Q Consensus       309 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~~----~~~~l~~L~ls~N~l~~~~p  369 (700)
                      +.|+|++|++++..|..+..++ +|+.|+|++|++++.-+..    +....+.+.+..+.+....|
T Consensus       226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            8888888888887777777774 8888888888887654321    12233444555555543333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.5e-26  Score=260.63  Aligned_cols=246  Identities=19%  Similarity=0.203  Sum_probs=185.5

Q ss_pred             CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361          114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL  192 (700)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (700)
                      .+++++.|++++|.+...++..+..++ |++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            468999999999999988888888888 9999999999998888899999999999999999998888889999999999


Q ss_pred             EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361          193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS  272 (700)
Q Consensus       193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  272 (700)
                      +|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            99999999666667899999999999999999988989999999999999999998653   344555555555554433


Q ss_pred             CCccc-----------------ccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEE
Q 005361          273 ESAFP-----------------KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM  335 (700)
Q Consensus       273 ~~~~~-----------------~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  335 (700)
                      ....+                 .....+|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..|..+++|+.|
T Consensus       206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence            21111                 0011356666666666654  2445566666666666666666556666666666666


Q ss_pred             EccCCcCCCCCchhh--hcCCCeeeeecCccc
Q 005361          336 YLTGNKLTGPVPKYI--FNSNKNVDISLNNFT  365 (700)
Q Consensus       336 ~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~  365 (700)
                      +|++|++++ +|...  +++|+.|+|++|.++
T Consensus       284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence            666666653 33332  345566666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=5.2e-26  Score=259.03  Aligned_cols=154  Identities=19%  Similarity=0.251  Sum_probs=136.7

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL  174 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  174 (700)
                      .++.+++.++. +|..+.  ++|++|+|++|.+++..+..|..++ |++|++++|.+++..|..|.++++|++|+|++|.
T Consensus        15 ~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           15 TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             EEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             ceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence            46666777764 454443  7899999999999998888999998 9999999999998889999999999999999999


Q ss_pred             CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC-CChhhhcCCCcccEEEccCCCCCCCch
Q 005361          175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      +++..|..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|.+++..+
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            998889999999999999999999997777889999999999999999986 568999999999999999988765433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=2.8e-25  Score=244.40  Aligned_cols=256  Identities=25%  Similarity=0.342  Sum_probs=146.1

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++..+  +.++++|++|++++|.+.+..+  +..++ |++|++++|.+++..+  +.++++|++|+
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  140 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE  140 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence            3578899999998886654  8889999999999998887665  77777 9999999998886543  88889999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +++|.+.+ ++ .+..+++|+.|+++ |.+.+..  .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+
T Consensus       141 l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  213 (466)
T 1o6v_A          141 LSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD  213 (466)
T ss_dssp             EEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence            99888874 33 35555555555554 2333221  255555555555555555432  124555555555555555554


Q ss_pred             CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                      ..+  +..+++|+.|++++|.+...  +.+.. ++|+.|++++|.+++..+  +..+++|+.|+|++|++++..+  +..
T Consensus       214 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  285 (466)
T 1o6v_A          214 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG  285 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence            333  44455555555555444332  22222 445555555554443322  4444444444444444443222  344


Q ss_pred             CCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccccc
Q 005361          329 LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWE  367 (700)
Q Consensus       329 l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~  367 (700)
                      +++|+.|+|++|++++..+..-+++++.|++++|.+++.
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred             CCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc
Confidence            444444444444444333322233444444444444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.2e-25  Score=235.03  Aligned_cols=223  Identities=22%  Similarity=0.305  Sum_probs=178.1

Q ss_pred             CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361          114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL  192 (700)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (700)
                      ..++++.|+|++|.+. .+|..+..++ |++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4578899999999888 4555566676 888888888888 77888888888888888888888 678888888888888


Q ss_pred             EeeecCCCCcCchhhhC---------CCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCE
Q 005361          193 ILSSNSFTGELPAELTK---------LTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTD  263 (700)
Q Consensus       193 ~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  263 (700)
                      ++++|.+.+.+|..+..         +++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            88888877777776544         777777777777776 566667777777777777777764 4445555555555


Q ss_pred             EEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          264 LRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       264 L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                                             |+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++.
T Consensus       234 -----------------------L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          234 -----------------------LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             -----------------------EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             -----------------------EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence                                   555567777788899999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhc--CCCeeeeecCcc
Q 005361          344 GPVPKYIFN--SNKNVDISLNNF  364 (700)
Q Consensus       344 ~~ip~~~~~--~l~~L~ls~N~l  364 (700)
                      +.+|..+..  +++.+++..|.+
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhccHHHhhccCceEEeCCHHHH
Confidence            999998854  678888877643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=6.6e-25  Score=241.46  Aligned_cols=278  Identities=23%  Similarity=0.326  Sum_probs=227.9

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|++.++.+.. +| .+..+++|++|+|++|.+++..+  +..++ |++|++++|.+++..+  +.++++|++|+|
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            579999999999875 44 48899999999999999997765  77777 9999999999997655  999999999999


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      ++|.+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+..  .+..+++|+.|++++|.+...
T Consensus       120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC
Confidence            99999865 33 8999999999999999985 34 48999999999997 5555443  388999999999999999854


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361          251 IPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL  329 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  329 (700)
                        ..+..+++|+.|++++|.+.....  +.. ++|+.|++++|.+++.  ..+..+++|+.|+|++|++++..+  +..+
T Consensus       193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l  264 (466)
T 1o6v_A          193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL  264 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence              348899999999999987765432  444 8999999999999854  357889999999999999997655  8899


Q ss_pred             CCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcc
Q 005361          330 AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH  396 (700)
Q Consensus       330 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~  396 (700)
                      ++|+.|++++|++++..+..-+++++.|++++|.+.+..|  + .   ...-++.+....|.+....
T Consensus       265 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~---~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--I-S---NLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--G-G---GCTTCSEEECCSSCCSCCG
T ss_pred             CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--h-c---CCCCCCEEECcCCcCCCch
Confidence            9999999999999976554445689999999999987654  2 1   2223455555666655443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.8e-26  Score=247.99  Aligned_cols=230  Identities=22%  Similarity=0.245  Sum_probs=199.6

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      ...+++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|..++ |++|+|++|.++...+..|..+++|++|
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            346789999999999999889999999999999999999998889999998 9999999999998777789999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeec-CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSN-SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      +|++|.+....+..|..+++|+.|+|++| .+....+..|.++++|++|+|++|.++ .+| .+..+++|+.|+|++|.+
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence            99999999777778999999999999995 455444557999999999999999998 445 478899999999999999


Q ss_pred             CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361          248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE  327 (700)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  327 (700)
                      ++..|..|..+++|+.|++++                       |++++..+..|..+++|+.|+|++|+|++..+..|.
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~-----------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQ-----------------------SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTT-----------------------CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             CccChhhhccCccCCEEECCC-----------------------CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            987788888877777666555                       566666677788888888999999988877777888


Q ss_pred             cCCCCCEEEccCCcCCC
Q 005361          328 KLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       328 ~l~~L~~L~L~~N~l~~  344 (700)
                      .+++|+.|+|++|.+.-
T Consensus       277 ~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             SCTTCCEEECCSSCEEC
T ss_pred             cccCCCEEEcCCCCccC
Confidence            88889999999888753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=5.2e-26  Score=233.33  Aligned_cols=237  Identities=17%  Similarity=0.171  Sum_probs=201.8

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCC-CCCCCchhcCCCCCCCE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNR-LSGPFPKVLTNITTLKN  167 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~-l~~~~p~~~~~l~~L~~  167 (700)
                      .+.+++.|++++|.+++..+..|..+++|++|+|++|.+++..+..+..++ |++|++++|. +....|..|..+++|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            456899999999999988888899999999999999999988888999988 9999999997 88777889999999999


Q ss_pred             EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      |+|++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99999999988888999999999999999999977777799999999999999999977777899999999999999999


Q ss_pred             CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361          248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE  327 (700)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  327 (700)
                      .+..|..+..+++|+.|++                       ++|.+++..+..+..+++|+.|+|++|.+....+.. .
T Consensus       190 ~~~~~~~~~~l~~L~~L~l-----------------------~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~  245 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYL-----------------------FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-P  245 (285)
T ss_dssp             CEECTTTTTTCTTCCEEEC-----------------------CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-H
T ss_pred             cccCHhHccCcccccEeeC-----------------------CCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-H
Confidence            9877877777766666655                       456777666777889999999999999998644321 1


Q ss_pred             cCCCCCEEEccCCcCCCCCchhh
Q 005361          328 KLAKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       328 ~l~~L~~L~L~~N~l~~~ip~~~  350 (700)
                      -...++.+....+.+....|..+
T Consensus       246 ~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          246 LWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             HHHHHHHCCSEECCCBEEESGGG
T ss_pred             HHHHHHhcccccCccccCCchHh
Confidence            12234455567777777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=2.5e-25  Score=243.22  Aligned_cols=255  Identities=20%  Similarity=0.153  Sum_probs=217.2

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|++++|.+++. | .+..+++|++|+|++|.+++. +  +..++ |++|++++|.+++. +  ++++++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            35799999999999975 4 699999999999999999985 3  67777 99999999999975 3  88999999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +++|++++ +|  ++.+++|++|++++|.+++. +  +..+++|++|++++|...+.+  .+..+++|+.|++++|.+++
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            99999996 44  88999999999999999964 3  788999999999999666555  47889999999999999997


Q ss_pred             CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                       +|  +..+++|+.|++++|.+....   +.. ++|+.|++++|++++ +|  +..+++|+.|+|++|++++..+..+..
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             -ec--cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence             44  889999999999998887753   444 899999999999997 55  788999999999999999876655555


Q ss_pred             CC-------CCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCC
Q 005361          329 LA-------KTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSD  370 (700)
Q Consensus       329 l~-------~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~  370 (700)
                      +.       +|+.|++++|++.+.+|..-+++++.|++++|.+.+.+|.
T Consensus       256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence            54       5667778888877788876678899999999998888774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3.2e-26  Score=242.50  Aligned_cols=264  Identities=18%  Similarity=0.184  Sum_probs=194.6

Q ss_pred             cCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCC
Q 005361          100 KAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGS  178 (700)
Q Consensus       100 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  178 (700)
                      +++.++. +|..+.  ++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|.++++|++|+|++|.+++.
T Consensus        39 ~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           39 SSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             CSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            4566663 454443  5899999999999987777888888 99999999999987788899999999999999999865


Q ss_pred             CCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecC-cCCCCChhhhcCCCcccEEEccCCCCCCCchhhhh
Q 005361          179 IPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDN-NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS  256 (700)
Q Consensus       179 ~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  256 (700)
                      .+..|.++++|++|++++|.++...+ ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+..|..+.
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  195 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK  195 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence            55558889999999999999885433 47888999999999988 46656677888889999999999988877677777


Q ss_pred             cCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH---hcCCCCC
Q 005361          257 ALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF---EKLAKTN  333 (700)
Q Consensus       257 ~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~  333 (700)
                      .+++|+.|+++                       +|.++...+..+..+++|+.|+|++|++++..+..+   ...+.++
T Consensus       196 ~l~~L~~L~l~-----------------------~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~  252 (353)
T 2z80_A          196 SIQNVSHLILH-----------------------MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK  252 (353)
T ss_dssp             TCSEEEEEEEE-----------------------CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred             ccccCCeecCC-----------------------CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence            66655555554                       455543333344557788888888888876554433   3467789


Q ss_pred             EEEccCCcCCC----CCchhh--hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCC
Q 005361          334 FMYLTGNKLTG----PVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLD  393 (700)
Q Consensus       334 ~L~L~~N~l~~----~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~  393 (700)
                      .++|++|.+++    .+|..+  +++++.|++++|.++ .+|..+-..+   .-++.+....|.+.
T Consensus       253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l---~~L~~L~L~~N~~~  314 (353)
T 2z80_A          253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL---TSLQKIWLHTNPWD  314 (353)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC---TTCCEEECCSSCBC
T ss_pred             ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC---CCCCEEEeeCCCcc
Confidence            99999999876    355554  347999999999998 5665432222   23445555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.9e-27  Score=245.88  Aligned_cols=246  Identities=20%  Similarity=0.216  Sum_probs=147.6

Q ss_pred             cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCC-CCCchhcC-------CCCCCCEEEccCCcCCCCCCccc-
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS-GPFPKVLT-------NITTLKNLSIEGNLFTGSIPPDI-  183 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~-  183 (700)
                      ...++|+.|++++|.+  .+|..+... |+.|+|++|.+. ..+|..+.       ++++|++|+|++|.+++.+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            4455666666666666  334332222 666666666662 33444443       56667777777777666666654 


Q ss_pred             -cCCCCccEEEeeecCCCCcCchhhhCC-----CCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC--chhhh
Q 005361          184 -RKLINLQKLILSSNSFTGELPAELTKL-----TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPASI  255 (700)
Q Consensus       184 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~  255 (700)
                       ..+++|++|+|++|.+++. |..+..+     ++|++|+|++|++++..+..+..+++|++|+|++|.+.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             6666777777777766655 5555555     6677777777777666666666677777777777766543  23333


Q ss_pred             --hcCCCCCEEEcCCCCCCCCc-cc-c-cCc-cCccEEEcccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361          256 --SALTSLTDLRISDLKGSESA-FP-K-LDK-MNLKTLILTKCLIHGEIP-DYIGDMTKLKNIDLSFNNLTGGIPTTFEK  328 (700)
Q Consensus       256 --~~l~~L~~L~l~~n~~~~~~-~~-~-l~~-~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  328 (700)
                        ..+++|+.|++++|.+.... .+ . +.. ++|+.|+|++|++++.+| ..+..+++|+.|+|++|+|+ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence              66667777777766554221 11 1 122 567777777777776554 34455677777777777776 5555444 


Q ss_pred             CCCCCEEEccCCcCCCCCch-hhhcCCCeeeeecCcccc
Q 005361          329 LAKTNFMYLTGNKLTGPVPK-YIFNSNKNVDISLNNFTW  366 (700)
Q Consensus       329 l~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~ls~N~l~~  366 (700)
                       ++|+.|+|++|++++. |. .-+++++.|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence             6677777777777644 43 112356677777776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=4.3e-25  Score=241.95  Aligned_cols=227  Identities=17%  Similarity=0.177  Sum_probs=168.9

Q ss_pred             CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361          119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS  198 (700)
Q Consensus       119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (700)
                      +.++.++..++.. |..+. ..+++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus        57 ~~v~c~~~~l~~i-P~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           57 SKVVCTRRGLSEV-PQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             CEEECCSSCCSSC-CSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEECCCCcCcc-CCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            4567777777643 33221 128888888888887777788888888888888888887777778888888888888888


Q ss_pred             CCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCC-CCCCchhhhhcCCCCCEEEcCCCCCCCCccc
Q 005361          199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSS-LEGPIPASISALTSLTDLRISDLKGSESAFP  277 (700)
Q Consensus       199 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  277 (700)
                      ++...+..|..+++|++|+|++|.++...+..+..+++|+.|+|++|. +....+..|..+++                 
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-----------------  197 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-----------------  197 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-----------------
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-----------------
Confidence            876666667778888888888887776556667777777777777643 33222233445544                 


Q ss_pred             ccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCC
Q 005361          278 KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNK  355 (700)
Q Consensus       278 ~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~  355 (700)
                            |+.|+|++|++++. | .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.  ++++
T Consensus       198 ------L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          198 ------LKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             ------CCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ------CCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence                  45555555666643 3 367889999999999999999999999999999999999999977676553  5799


Q ss_pred             eeeeecCcccccCCCCC
Q 005361          356 NVDISLNNFTWESSDPI  372 (700)
Q Consensus       356 ~L~ls~N~l~~~~p~~~  372 (700)
                      .|+|++|++++..+..+
T Consensus       270 ~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             EEECCSSCCSCCCTTSS
T ss_pred             EEECCCCcCCccChHHh
Confidence            99999999997665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.1e-27  Score=242.98  Aligned_cols=243  Identities=21%  Similarity=0.274  Sum_probs=204.2

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCC-CCcccccc-------ccc-ccEEEccCCCCCCCCchhc--C
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT-GSFSPQWA-------SLQ-LVELSVMGNRLSGPFPKVL--T  160 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~-L~~L~L~~n~l~~~~p~~~--~  160 (700)
                      .+++.|++++|.+  .+|..+...  |+.|+|++|.+. ..++..+.       .++ |++|++++|.+++.+|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            4677788888988  667766554  889999999984 44555544       456 9999999999998888876  8


Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCC-----CCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCC--Chhhh--
Q 005361          161 NITTLKNLSIEGNLFTGSIPPDIRKL-----INLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK--IPEFI--  231 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--  231 (700)
                      .+++|++|+|++|.+++. |..+..+     ++|++|++++|.+.+..+..|..+++|++|++++|++.+.  .+..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            999999999999999977 8888877     9999999999999988889999999999999999998765  33444  


Q ss_pred             cCCCcccEEEccCCCCCCC--ch-hhhhcCCCCCEEEcCCCCCCCCc-ccccCc-cCccEEEcccCCCCCCCchhhcCCC
Q 005361          232 GKWKKIQKLHIQGSSLEGP--IP-ASISALTSLTDLRISDLKGSESA-FPKLDK-MNLKTLILTKCLIHGEIPDYIGDMT  306 (700)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~  306 (700)
                      ..+++|++|+|++|.+++.  ++ ..+..+++|+.|++++|.+.... .+.+.. ++|+.|+|++|+|+ .+|..+.  +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence            8899999999999999842  22 34568899999999999887755 344554 89999999999999 6676665  8


Q ss_pred             CCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361          307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       307 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                      +|+.|+|++|+|++. |. +..+++|+.|+|++|++++
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            999999999999976 55 8999999999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=7.1e-25  Score=250.85  Aligned_cols=147  Identities=21%  Similarity=0.278  Sum_probs=128.4

Q ss_pred             cCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCC
Q 005361          100 KAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGS  178 (700)
Q Consensus       100 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  178 (700)
                      ++.+++ .+|..+.  +++++|+|++|.|+++.+..|..++ |++|+|++|.|+++.+..|.++++|++|+|++|++++.
T Consensus        39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            344455 3444332  4799999999999998889999998 99999999999988888999999999999999999977


Q ss_pred             CCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC-CChhhhcCCCcccEEEccCCCCCC
Q 005361          179 IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       179 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      .+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.++. ..|..+..+++|++|+|++|.+++
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            77789999999999999999997777789999999999999999975 467888999999999999987654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-26  Score=241.71  Aligned_cols=263  Identities=17%  Similarity=0.133  Sum_probs=218.4

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      ++..++++.+.+...+...+..+++|++|+|++|.+++..+..+..++ |++|+|++|.+++..+  +..+++|++|+|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            455666777777655666677788999999999999998888999988 9999999999986655  8999999999999


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +|.+++.     ...++|+.|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..
T Consensus        89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            9998732     2448999999999999866544   3688999999999999887888999999999999999999877


Q ss_pred             hhhh-hcCCCCCEEEcCCCCCCCCcccccC-ccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361          252 PASI-SALTSLTDLRISDLKGSESAFPKLD-KMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL  329 (700)
Q Consensus       252 ~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  329 (700)
                      +..+ ..+++|+.|++++|.+...  +... .++|++|+|++|++++..+ .+..+++|+.|+|++|+|+ .+|..+..+
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcC
Confidence            7776 4789999999999887655  3333 3899999999999996554 4889999999999999999 567788999


Q ss_pred             CCCCEEEccCCcCC-CCCchhhh--cCCCeeeeecC-cccccCC
Q 005361          330 AKTNFMYLTGNKLT-GPVPKYIF--NSNKNVDISLN-NFTWESS  369 (700)
Q Consensus       330 ~~L~~L~L~~N~l~-~~ip~~~~--~~l~~L~ls~N-~l~~~~p  369 (700)
                      ++|+.|+|++|+++ +.+|..+.  +.++.+++++| .+.|..|
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            99999999999998 55665553  35678888855 4666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1e-24  Score=223.78  Aligned_cols=214  Identities=21%  Similarity=0.214  Sum_probs=132.4

Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361          161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL  240 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  240 (700)
                      ++++|++++++++.++ .+|..+.  ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+  ...+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            3444444444444444 2333221  344444444444444334444444444444444444442211  1344444444


Q ss_pred             EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361          241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      +|++|.+. .+|..+..+++|+.|++++|.+.......+.. ++|+.|+|++|++++..+..|..+++|+.|+|++|+|+
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            44444444 33444444455555555554444333333333 56666677778888777778888999999999999999


Q ss_pred             CCChhhHhcCCCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCcccccCCCCCCCCCCCccceecccCCC
Q 005361          320 GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPR  389 (700)
Q Consensus       320 ~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~  389 (700)
                      +..+..|..+++|+.|+|++|+++ .+|..++.  .++.|+|++|        +|.|+|...++..|+....
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N--------p~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN--------PWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC--------CBCCSGGGHHHHHHHHHTG
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC--------CccCcCccHHHHHHHHhCc
Confidence            777777889999999999999998 78887765  5889999999        5569999999999987553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=4.7e-24  Score=233.17  Aligned_cols=272  Identities=19%  Similarity=0.117  Sum_probs=214.7

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++. +  +..+++|++|+|++|.+++. +  +..++ |++|++++|.+++. +  +..+++|++|+
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~  133 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLN  133 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEE
Confidence            45799999999999985 3  88999999999999999985 2  77777 99999999999964 4  88999999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +++|++++.   .++.+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++
T Consensus       134 l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence            999999964   3788999999999999665555  47789999999999999986 44  7888999999999999986


Q ss_pred             CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCC-------CCCEEeccCCCCCCC
Q 005361          250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMT-------KLKNIDLSFNNLTGG  321 (700)
Q Consensus       250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~  321 (700)
                      .   .+..+++|+.|++++|.+...  | +.. ++|+.|++++|++++..+..+..+.       +|+.|++++|.+.+.
T Consensus       206 ~---~l~~l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~  279 (457)
T 3bz5_A          206 L---DLNQNIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY  279 (457)
T ss_dssp             C---CCTTCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             e---ccccCCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence            5   388899999999999888774  4 444 8999999999999987655444443       455666666666665


Q ss_pred             ChhhHhcCCCCCEEEccCCcCCCCCchhh----------hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCC
Q 005361          322 IPTTFEKLAKTNFMYLTGNKLTGPVPKYI----------FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNK  391 (700)
Q Consensus       322 ~p~~~~~l~~L~~L~L~~N~l~~~ip~~~----------~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~  391 (700)
                      +|  +..+++|+.|++++|.+.+.+|...          .++++.|++++|.+++. |  + +.|.   -++.+....|.
T Consensus       280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l-~~l~---~L~~L~l~~N~  350 (457)
T 3bz5_A          280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--V-SHNT---KLKSLSCVNAH  350 (457)
T ss_dssp             EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--C-TTCT---TCSEEECCSSC
T ss_pred             cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--c-ccCC---cCcEEECCCCC
Confidence            65  4678899999999998877776432          23677889999998884 3  3 3332   34455566666


Q ss_pred             CCC
Q 005361          392 LDK  394 (700)
Q Consensus       392 ~~~  394 (700)
                      +..
T Consensus       351 l~~  353 (457)
T 3bz5_A          351 IQD  353 (457)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=2.2e-24  Score=243.71  Aligned_cols=277  Identities=17%  Similarity=0.177  Sum_probs=219.9

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL  168 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L  168 (700)
                      .+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..++ |++|++++|.+++..|..|.++++|++|
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            345799999999999998888999999999999999999988888899888 9999999999998888999999999999


Q ss_pred             EccCCcCCCCCCccccCCCCccEEEeeecCCCC-cCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcc----cEEEcc
Q 005361          169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI----QKLHIQ  243 (700)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~  243 (700)
                      ++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..+..+++|    +.|+++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            999999997666679999999999999999986 469999999999999999999998888888888888    899999


Q ss_pred             CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc----------------------------------ccccCccCccEEEc
Q 005361          244 GSSLEGPIPASISALTSLTDLRISDLKGSESA----------------------------------FPKLDKMNLKTLIL  289 (700)
Q Consensus       244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------------------~~~l~~~~L~~L~L  289 (700)
                      +|.+.+..+..+..+ +|+.|++++|......                                  +..+....++.+++
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            999998777777766 7999998876322110                                  11111123455666


Q ss_pred             ccC-CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccC
Q 005361          290 TKC-LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWES  368 (700)
Q Consensus       290 ~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~  368 (700)
                      +++ .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.++ .+|...+++++.|++++|.+.+..
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccc
Confidence            665 555566666666777777777777776 455556666 7777777777776 566555566677777777665554


Q ss_pred             CC
Q 005361          369 SD  370 (700)
Q Consensus       369 p~  370 (700)
                      +.
T Consensus       342 ~~  343 (570)
T 2z63_A          342 SE  343 (570)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2e-25  Score=246.24  Aligned_cols=239  Identities=19%  Similarity=0.172  Sum_probs=196.1

Q ss_pred             CchhhcCC----CCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCcc
Q 005361          108 LPTELSKL----RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD  182 (700)
Q Consensus       108 ~~~~l~~l----~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  182 (700)
                      +|..+..+    ++|+.|+|++|.+++..|..|..++ |++|+|++|.+++..|  +..+++|++|+|++|.+++. |  
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~--   96 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L--   96 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E--
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C--
Confidence            34445444    4899999999999998888998888 9999999999987666  88999999999999998743 2  


Q ss_pred             ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhh-cCCCC
Q 005361          183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS-ALTSL  261 (700)
Q Consensus       183 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L  261 (700)
                        ..++|+.|++++|.+++..+.   .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|
T Consensus        97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A           97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence              348999999999999876554   468899999999999988888899999999999999999988888876 79999


Q ss_pred             CEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC
Q 005361          262 TDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN  340 (700)
Q Consensus       262 ~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  340 (700)
                      +.|+|++|.+...  +.... ++|+.|+|++|.+++.+|. +..+++|+.|+|++|.|++ +|..+..+++|+.|++++|
T Consensus       172 ~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          172 EHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             cEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence            9999999887654  33333 8999999999999976554 8888999999999999995 6777888999999999999


Q ss_pred             cCC-CCCchhhhc--CCCeeeee
Q 005361          341 KLT-GPVPKYIFN--SNKNVDIS  360 (700)
Q Consensus       341 ~l~-~~ip~~~~~--~l~~L~ls  360 (700)
                      .+. +.+|..+..  .++.++++
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCcchHHHHHhCCCCcEEecc
Confidence            997 555554432  34455554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=6.4e-24  Score=216.61  Aligned_cols=208  Identities=20%  Similarity=0.242  Sum_probs=118.7

Q ss_pred             CCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEe
Q 005361          116 RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLIL  194 (700)
Q Consensus       116 ~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (700)
                      ++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4677888887777766555666665 666666666666555556666666666666666666555555666666666666


Q ss_pred             eecCCCCcCchhhhCCCCCcEEEeecCcCCCC-ChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361          195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE  273 (700)
Q Consensus       195 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  273 (700)
                      ++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+..+.+|+.|.+       
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l-------  180 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------  180 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE-------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce-------
Confidence            66666654444555666666666666666542 3555555556666666655555444444443333331110       


Q ss_pred             CcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          274 SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       274 ~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                                  .|++++|.+++..+..+.. .+|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus       181 ------------~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          181 ------------SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ------------EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ------------eeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence                        3445555555443333322 35666666666666544444555555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.8e-23  Score=212.51  Aligned_cols=213  Identities=23%  Similarity=0.319  Sum_probs=127.5

Q ss_pred             CCeeeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcC
Q 005361           81 SNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLT  160 (700)
Q Consensus        81 ~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~  160 (700)
                      .++.|.|.   .+++.++++++.++. +|..+.  ++|+.|+|++|.+.+..+..|                       .
T Consensus         8 ~~~~C~c~---~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~-----------------------~   58 (270)
T 2o6q_A            8 DGGVCSCN---NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAF-----------------------H   58 (270)
T ss_dssp             GTCSBEEE---TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSS-----------------------S
T ss_pred             CCCCCEeC---CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHh-----------------------c
Confidence            67778774   345678888888774 443332  456667776666665444444                       4


Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361          161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL  240 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  240 (700)
                      ++++|++|+|++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence            44455555555555443333334445555555555555554444445555555556665555555555555666666666


Q ss_pred             EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      +|++|.+....+..|..+++|+.|+++                       +|.+++..+..|..+++|+.|+|++|++++
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~-----------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLY-----------------------NNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECC-----------------------SSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcCCccCHhHccCCcccceeEec-----------------------CCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            666666665444445555555444443                       344554555556677788888888888886


Q ss_pred             CChhhHhcCCCCCEEEccCCcCCCC
Q 005361          321 GIPTTFEKLAKTNFMYLTGNKLTGP  345 (700)
Q Consensus       321 ~~p~~~~~l~~L~~L~L~~N~l~~~  345 (700)
                      ..+..|..+++|+.|+|++|.+...
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCHHHhccccCCCEEEecCCCeeCC
Confidence            6666777888888888888887643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3e-23  Score=210.92  Aligned_cols=213  Identities=20%  Similarity=0.294  Sum_probs=166.2

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      .+.++++++.++ .+|..+.  ++|++|+|++|.+....+..|.++++|++|++++|.++...+..|..+++|++|+|++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            566777777776 3554443  5788888888888876666788888888888888888866566678888888888888


Q ss_pred             CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361          221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD  300 (700)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~  300 (700)
                      |.++...+..+..+++|++|+|++|.++...+..|..+++|+.|+                       |++|.+++..+.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------------Ls~n~l~~~~~~  151 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS-----------------------LGYNELQSLPKG  151 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----------------------CCSSCCCCCCTT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE-----------------------CCCCcCCccCHh
Confidence            888877677778888888888888888776666666666555554                       555677766666


Q ss_pred             hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchh-h--hcCCCeeeeecCcccccCCCCCCCCCC
Q 005361          301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY-I--FNSNKNVDISLNNFTWESSDPIECPRG  377 (700)
Q Consensus       301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~--~~~l~~L~ls~N~l~~~~p~~~~C~~~  377 (700)
                      .|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++ +|.. +  +++++.|+|++|        +|.|+|.
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N--------~~~c~c~  222 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN--------PWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSS--------CBCCSSS
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCC--------CeeCCCc
Confidence            78899999999999999998888889999999999999999995 5544 3  347889999999        4559997


Q ss_pred             -CccceecccCC
Q 005361          378 -SVNLVESYSSP  388 (700)
Q Consensus       378 -~~~~~~~~~~~  388 (700)
                       ..++..|+...
T Consensus       223 ~~~~~~~~l~~~  234 (270)
T 2o6q_A          223 GIIYMAKWLKKK  234 (270)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             cHHHHHHHHHhh
Confidence             55667777543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.4e-23  Score=212.35  Aligned_cols=209  Identities=20%  Similarity=0.211  Sum_probs=180.0

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      +.+++.|++++|.+++..+..|.++++|++|+|++|.+.+..+..+..++ |++|++++|.+++..+..|.++++|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            45799999999999988888999999999999999999988888898888 99999999999988888999999999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc----EEEccC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ----KLHIQG  244 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~  244 (700)
                      +++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            999999977777899999999999999999864 689999999999999999999987777777666666    788888


Q ss_pred             CCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh
Q 005361          245 SSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP  323 (700)
Q Consensus       245 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  323 (700)
                      |.+.+..+..+.                        ..+|+.|+|++|++++..+..+..+++|+.|+|++|.+.+..+
T Consensus       187 n~l~~~~~~~~~------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAFK------------------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSSC------------------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCccccC------------------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            877743332221                        1357777888888887777778899999999999999996543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=4.1e-25  Score=230.17  Aligned_cols=244  Identities=17%  Similarity=0.138  Sum_probs=208.4

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..+  +..++ |++|++++|.+++..     ..++|++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence            3479999999999999888999999999999999999987665  77777 999999999988433     348999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhh-cCCCcccEEEccCCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~  248 (700)
                      +++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+|++|.++
T Consensus       106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            999999865443   46889999999999998778889999999999999999998777766 47899999999999998


Q ss_pred             CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC-CCChhhH
Q 005361          249 GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT-GGIPTTF  326 (700)
Q Consensus       249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~  326 (700)
                      .. + ....+++|+.|++++|.+...+.. +.. ++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+. +.+|..+
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             cc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            54 3 234589999999999888754333 555 89999999999999 56777899999999999999999 7788899


Q ss_pred             hcCCCCCEEEccCC-cCCCCCch
Q 005361          327 EKLAKTNFMYLTGN-KLTGPVPK  348 (700)
Q Consensus       327 ~~l~~L~~L~L~~N-~l~~~ip~  348 (700)
                      ..+++|+.|++.+| .++|..|.
T Consensus       259 ~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          259 SKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hccccceEEECCCchhccCCchh
Confidence            99999999999954 56665554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=8.9e-23  Score=222.80  Aligned_cols=245  Identities=22%  Similarity=0.317  Sum_probs=143.3

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      +++.|++++|.+++ +| .|.++++|++|++++|.+++ +|..+  ..|++|++++|.+++ +| .+.++++|++|++++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence            45555555555554 33 35555555555555555554 22211  125555555555554 33 355555666666666


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      |.+++ +|...   ++|+.|++++|.++ .+|. +..+++|++|++++|++++ +|.   .+++|+.|++++|.+++ +|
T Consensus       205 N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~  273 (454)
T 1jl5_A          205 NSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LP  273 (454)
T ss_dssp             SCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CC
T ss_pred             CcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cC
Confidence            65553 33221   35566666666555 3442 5566666666666666653 232   12456666666666554 33


Q ss_pred             hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCC-CCCCEEeccCCCCCCCChhhHhcCCC
Q 005361          253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDM-TKLKNIDLSFNNLTGGIPTTFEKLAK  331 (700)
Q Consensus       253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~  331 (700)
                      ..   +++|+.|++++|.+...  +.+ .++|+.|++++|++++. +    .+ ++|+.|+|++|++++ +|..   +++
T Consensus       274 ~~---~~~L~~L~ls~N~l~~l--~~~-~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~  338 (454)
T 1jl5_A          274 EL---PQSLTFLDVSENIFSGL--SEL-PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPR  338 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSEE--SCC-CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred             cc---cCcCCEEECcCCccCcc--cCc-CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCc
Confidence            21   35566666666554431  111 14666677777666641 1    22 588899999998886 5533   578


Q ss_pred             CCEEEccCCcCCCCCchhhhcCCCeeeeecCcccc--cCCCCC
Q 005361          332 TNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTW--ESSDPI  372 (700)
Q Consensus       332 L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~--~~p~~~  372 (700)
                      |+.|++++|+++ .+|. ...+++.|++++|++++  .+|..+
T Consensus       339 L~~L~L~~N~l~-~lp~-~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          339 LERLIASFNHLA-EVPE-LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             CCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             CCEEECCCCccc-cccc-hhhhccEEECCCCCCCcCCCChHHH
Confidence            999999999988 5777 66788899999999888  677665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.7e-23  Score=211.44  Aligned_cols=202  Identities=19%  Similarity=0.254  Sum_probs=127.3

Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEE
Q 005361          162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLH  241 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  241 (700)
                      +++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4444444444444431 1 1244444444444444444421  2344445555555555555444444444455555555


Q ss_pred             ccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          242 IQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       242 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      |++|.+++..+..+..+++|+.|++++|.+.......+.. ++|+.|+|++|++++..+..+..+++|+.|+|++|++++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            5555555444444455555555555554444332222333 566667777788887777788899999999999999998


Q ss_pred             CChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCC
Q 005361          321 GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       321 ~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~  372 (700)
                      ..+..+..+++|+.|+|++|.+.+..|     .++.++++.|.++|.+|..+
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTT-----TTHHHHHHHHHTGGGBBCTT
T ss_pred             cCHHHHhCCcCCCEEEccCCCccccCc-----HHHHHHHHHHhCCCcccCcc
Confidence            888888999999999999999987655     57788999999999999876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=3.2e-22  Score=218.36  Aligned_cols=265  Identities=22%  Similarity=0.292  Sum_probs=163.3

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      .+++.|++++|.+++ +|..   +++|++|++++|.+++... ..  ..|++|++++|.+++ +| .|.++++|++|+++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~~--~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-LP--PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-CC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-CC--CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence            467788888877776 4432   3677777777777765321 10  127777777777775 55 47777777777777


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +|++++ +|..+   .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .++|+.|++++|.+. .+
T Consensus       162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l  230 (454)
T 1jl5_A          162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL  230 (454)
T ss_dssp             SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred             CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence            777764 44432   467777777777764 44 46677777777777777664 3322   246667777777666 44


Q ss_pred             hhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC--CChhhH---
Q 005361          252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG--GIPTTF---  326 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~---  326 (700)
                      | .+..+++|+.|++++|.+...  |.. ..+|+.|++++|++++ +|..   +++|+.|++++|++++  .+|..+   
T Consensus       231 p-~~~~l~~L~~L~l~~N~l~~l--~~~-~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L  302 (454)
T 1jl5_A          231 P-ELQNLPFLTTIYADNNLLKTL--PDL-PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYL  302 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSSC--CSC-CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred             c-ccCCCCCCCEEECCCCcCCcc--ccc-ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEE
Confidence            4 366666777777766655432  111 1455666666665553 2221   2445555555555443  222111   


Q ss_pred             ----------hcC-CCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCC
Q 005361          327 ----------EKL-AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDK  394 (700)
Q Consensus       327 ----------~~l-~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~  394 (700)
                                ..+ ++|+.|++++|++++ +|.. +++++.|++++|.+++ +|. + +     .-++.+....|.+..
T Consensus       303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~-~~~L~~L~L~~N~l~~-lp~-~-l-----~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          303 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL-PPRLERLIASFNHLAE-VPE-L-P-----QNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSC-CCC-C-C-----TTCCEEECCSSCCSS
T ss_pred             ECcCCcCCcccCCcCcCCEEECCCCcccc-cccc-CCcCCEEECCCCcccc-ccc-h-h-----hhccEEECCCCCCCc
Confidence                      122 589999999999985 6664 4789999999999984 665 2 2     335556666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.5e-24  Score=235.36  Aligned_cols=234  Identities=16%  Similarity=0.128  Sum_probs=203.1

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ..+++.|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..++ |++|+|++|.+++..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            4489999999999999888999999999999999999987665  77787 9999999999985433     38999999


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhc-CCCcccEEEccCCCCC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG-KWKKIQKLHIQGSSLE  248 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~  248 (700)
                      |++|.+++..+.   .+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            999999965543   468999999999999988888999999999999999999988888776 7999999999999998


Q ss_pred             CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC-CCChhhH
Q 005361          249 GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT-GGIPTTF  326 (700)
Q Consensus       249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~  326 (700)
                      +. + ....+++|+.|++++|.+...+. .+.. ++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. +.+|..+
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            65 2 24469999999999988876433 3555 899999999999995 6777889999999999999998 6777888


Q ss_pred             hcCCCCCEEEcc
Q 005361          327 EKLAKTNFMYLT  338 (700)
Q Consensus       327 ~~l~~L~~L~L~  338 (700)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            888888877775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=6.3e-23  Score=230.96  Aligned_cols=240  Identities=28%  Similarity=0.336  Sum_probs=123.9

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      .++.|+++++.++ .+|..+.  ++|+.|+|++|.++... .   .++ |++|+|++|.++. +|.   .+++|++|+|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            4666667666666 4444343  56667777766666432 2   233 6666776666663 333   45666666666


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +|.+++ +|.   .+++|+.|++++|.++. +|..   +++|++|+|++|.+++ +|.   .+++|+.|++++|.++. +
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence            666663 333   44566666666666653 3332   3566666666666653 222   22344455555555443 2


Q ss_pred             hhhhhcCCCCCEEEcCCCCCCCCc------------------ccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEec
Q 005361          252 PASISALTSLTDLRISDLKGSESA------------------FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDL  313 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~n~~~~~~------------------~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  313 (700)
                      |   ..+++|+.|++++|.+...+                  ++.. .++|+.|+|++|+|++ +|   ..+++|+.|+|
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~-~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L  248 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL-PSGLKELIVSGNRLTS-LP---VLPSELKELMV  248 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCC-CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             c---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCC-CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence            2   23344445555444433211                  1110 1455555555555553 22   23455555555


Q ss_pred             cCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCC
Q 005361          314 SFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESS  369 (700)
Q Consensus       314 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p  369 (700)
                      ++|+|+. +|.   .+++|+.|+|++|+|+ .+|..+.  ++++.|+|++|++++.+|
T Consensus       249 s~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          249 SGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            5555552 332   4455555555555555 4454432  245555555555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.8e-22  Score=202.78  Aligned_cols=204  Identities=22%  Similarity=0.183  Sum_probs=152.0

Q ss_pred             hcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361          112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK  191 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  191 (700)
                      +.++++|++++++++.++..++.. . ..++.|+|++|.+++..+..|.++++|++|+|++|.+++. +. ...+++|+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-P-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-C-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-C-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCE
Confidence            567778888888888887543322 1 2378888888888877777888888888888888888743 32 267788888


Q ss_pred             EEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCC
Q 005361          192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG  271 (700)
Q Consensus       192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  271 (700)
                      |++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|.++...+..|..+++|+.|       
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-------  153 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-------  153 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE-------
Confidence            888888887 566677777888888888888876666777777888888888887776555555555555554       


Q ss_pred             CCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361          272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       272 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                                      +|++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+..
T Consensus       154 ----------------~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          154 ----------------SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ----------------ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ----------------ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence                            45556777566667788889999999999998 667777778889999999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=1.2e-24  Score=239.08  Aligned_cols=275  Identities=19%  Similarity=0.215  Sum_probs=211.0

Q ss_pred             cEEEEEecCCCCCC----cCchhhcCCCCCCEEECcCCCCCCCcccccc-----ccc-ccEEEccCCCCCCC----Cchh
Q 005361           93 HVVTIALKAQNLTG----TLPTELSKLRYLKQLDLSRNCLTGSFSPQWA-----SLQ-LVELSVMGNRLSGP----FPKV  158 (700)
Q Consensus        93 ~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~-L~~L~L~~n~l~~~----~p~~  158 (700)
                      +++.|+|++|.++.    .++..+..+++|++|+|++|.+.+..+..+.     ..+ |++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            68999999999884    5678889999999999999988754343332     233 99999999998864    3566


Q ss_pred             cCCCCCCCEEEccCCcCCCCCCcccc-----CCCCccEEEeeecCCCCc----CchhhhCCCCCcEEEeecCcCCCCC--
Q 005361          159 LTNITTLKNLSIEGNLFTGSIPPDIR-----KLINLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGKI--  227 (700)
Q Consensus       159 ~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~--  227 (700)
                      +..+++|++|+|++|.+....+..+.     .+++|+.|++++|.++..    ++..+..+++|++|++++|.+++..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            67789999999999987744333333     356899999999998853    5677888899999999999887432  


Q ss_pred             ---hhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccccC-----c-cCccEEEcccCCC
Q 005361          228 ---PEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKLD-----K-MNLKTLILTKCLI  294 (700)
Q Consensus       228 ---~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~-~~L~~L~L~~n~l  294 (700)
                         +..+..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+.......+.     . ++|+.|+|++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               22334688999999999998854    577788899999999999876543322221     1 5899999999999


Q ss_pred             CCC----CchhhcCCCCCCEEeccCCCCCCCChhhHhc-----CCCCCEEEccCCcCCC----CCchhh--hcCCCeeee
Q 005361          295 HGE----IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK-----LAKTNFMYLTGNKLTG----PVPKYI--FNSNKNVDI  359 (700)
Q Consensus       295 ~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~ip~~~--~~~l~~L~l  359 (700)
                      ++.    ++..+..+++|++|+|++|.+++..+..+..     .++|+.|+|++|++++    .+|..+  +++++.|++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l  405 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  405 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence            865    4566777899999999999988655555543     6799999999999986    666665  357899999


Q ss_pred             ecCccccc
Q 005361          360 SLNNFTWE  367 (700)
Q Consensus       360 s~N~l~~~  367 (700)
                      ++|++++.
T Consensus       406 ~~N~i~~~  413 (461)
T 1z7x_W          406 SNNCLGDA  413 (461)
T ss_dssp             CSSSCCHH
T ss_pred             CCCCCCHH
Confidence            99987743

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.5e-22  Score=204.25  Aligned_cols=206  Identities=22%  Similarity=0.213  Sum_probs=134.6

Q ss_pred             hcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361          112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ  190 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (700)
                      +..+++|+.|++++|.+... + .+..++ |++|++++|.+++.  ..+..+++|++|+|++|.+++..+..|..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC-T-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc-c-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34566666666666665532 1 244444 66666666665542  2456666666666666666655555556666666


Q ss_pred             EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361          191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK  270 (700)
Q Consensus       191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  270 (700)
                      +|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++           
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------  181 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-----------  181 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-----------
Confidence            666666666655555556666666666666666655555555666666666666666554444444444           


Q ss_pred             CCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361          271 GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       271 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~  350 (700)
                                  +|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+.       +++|+.|++..|+++|.+|.++
T Consensus       182 ------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          182 ------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             ------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             ------------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence                        455556666778877777888999999999999999854       4578899999999999999876


Q ss_pred             h
Q 005361          351 F  351 (700)
Q Consensus       351 ~  351 (700)
                      .
T Consensus       243 ~  243 (272)
T 3rfs_A          243 G  243 (272)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.1e-21  Score=196.87  Aligned_cols=158  Identities=21%  Similarity=0.274  Sum_probs=89.4

Q ss_pred             CCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361          164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  243 (700)
                      +|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            45555555555555444455555555555555555554444455555555555555555554444555555555555555


Q ss_pred             CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh
Q 005361          244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP  323 (700)
Q Consensus       244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  323 (700)
                      +|.+++..+..|..+++|+.|                       +|++|++++..+..|..+++|+.|+|++|++++..+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L-----------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKEL-----------------------RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEE-----------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCcCCCcChhHhccCCcccEE-----------------------ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            555554433334444333333                       334455554455556666777777777777776666


Q ss_pred             hhHhcCCCCCEEEccCCcCCC
Q 005361          324 TTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       324 ~~~~~l~~L~~L~L~~N~l~~  344 (700)
                      ..|..+++|+.|+|++|++++
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHhCCCCCCEEEeeCCceeC
Confidence            666667777777776666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=8.6e-23  Score=214.51  Aligned_cols=252  Identities=19%  Similarity=0.291  Sum_probs=175.3

Q ss_pred             cEEEEEecCCCCCCcCchhhcCC--CCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCC-CchhcCCCCCCCEEE
Q 005361           93 HVVTIALKAQNLTGTLPTELSKL--RYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGP-FPKVLTNITTLKNLS  169 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~  169 (700)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+..+..+....|++|++++|.+++. ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            4678888888766   5566777  889999999998888776655433388888888887754 677778888888888


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeec-CCCCc-CchhhhCCCCCcEEEeecC-cCCCC-ChhhhcCCC-cccEEEccC
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSN-SFTGE-LPAELTKLTNLNDLRISDN-NFSGK-IPEFIGKWK-KIQKLHIQG  244 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~  244 (700)
                      |++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            8888877666677777888888888887 56642 5555677777888888777 66643 455666777 777777777


Q ss_pred             C--CCC-CCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCC-CCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          245 S--SLE-GPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCL-IHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       245 n--~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      |  .++ ..++..+..+++|+.|++++                       |. +++..+..+..+++|+.|+|++|.  +
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~-----------------------~~~l~~~~~~~l~~l~~L~~L~l~~~~--~  259 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSD-----------------------SVMLKNDCFQEFFQLNYLQHLSLSRCY--D  259 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTT-----------------------CTTCCGGGGGGGGGCTTCCEEECTTCT--T
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCC-----------------------CCcCCHHHHHHHhCCCCCCEeeCCCCC--C
Confidence            7  343 34455556666666665555                       44 444455566677888888888885  2


Q ss_pred             CChh---hHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCC
Q 005361          321 GIPT---TFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIE  373 (700)
Q Consensus       321 ~~p~---~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~  373 (700)
                      ..+.   .+..+++|+.|++++| ++...-..+...+..|++++|.+++..|..+.
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence            2333   5677888888888888 44333233344577788888888888776663

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.87  E-value=1.1e-22  Score=190.45  Aligned_cols=159  Identities=21%  Similarity=0.289  Sum_probs=112.0

Q ss_pred             eeeEEeeCCccee-cCCceeecCccCC--ccccceecCCceEEeeeecccCCCCCCCcceEecccccccccccchhhhhh
Q 005361          414 YTLHINCGGAKIN-TGHTKYEADMEAR--GASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRT  490 (700)
Q Consensus       414 ~~~~~~c~~~~~~-~~~~~~~~~~~~~--g~s~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~t  490 (700)
                      ...++||||+... ..+.+|++|....  |.+..+.           .    +    ..       .....++|++||+|
T Consensus         6 ~~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~~~-----------~----~----~~-------~~~~~~~~~~lY~T   59 (174)
T 2jwp_A            6 VIWAVNAGGESHVDVHGIHYRKDPLEGRVGRASDYG-----------M----K----LP-------ILRSNPEDQVLYQT   59 (174)
T ss_dssp             EEEEEEETSSSEEETTTEEECSSCSSTTCCCCCCCC-----------T----T----SC-------CSSSCHHHHHTTTC
T ss_pred             EEEEEECCCCCccCCCCCEEcCCcCcccCCcccccc-----------c----c----eE-------ecccCCCCchhhhh
Confidence            3578999997763 4677898885421  2111100           0    0    00       00113778999999


Q ss_pred             hccCCccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccchhcCCcCccEEEeeEEEec
Q 005361          491 ARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVT  570 (700)
Q Consensus       491 ar~~~~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~~~~~~~~p~~~df~v~~~  570 (700)
                      ||.++.++||.++|+++|.|+|||||||+.+.      +.++|+||||||+++++++|||..++|+ ..|++++|.+.++
T Consensus        60 aR~~~~~~tY~f~v~~~G~Y~VrLhF~ei~~~------~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~  132 (174)
T 2jwp_A           60 ERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFA------QSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIK  132 (174)
T ss_dssp             CCCCCSCEEEEEECCSCEEEEEEEEEECCSCC------CSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEE
T ss_pred             hccCCCCeEEEEEeCCCeEEEEEEEEeccccC------CCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEe
Confidence            99999999999999999999999999999543      6899999999999999999999999977 7899999999886


Q ss_pred             CCccEEEEEEc-cCcccccCC-C-CCCCCccccccccc
Q 005361          571 SHTLKIHLYWA-GRGTTGIPL-R-GTYGPLISAISVKS  605 (700)
Q Consensus       571 ~~~~~i~~~~~-~~~~~~~~~-~-~~~gp~i~~~~~~~  605 (700)
                      ++.+.++..|. +.+...+.. + ..++|.++++++.+
T Consensus       133 ~~~l~i~~~~~~~~g~L~I~f~p~~~~~a~inaIEI~~  170 (174)
T 2jwp_A          133 KGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMK  170 (174)
T ss_dssp             TTEEEETTEEEECCSEEEEEEECSSSCSSSEEEEEEES
T ss_pred             cCceeeeeeecccCCeEEEEEeccCCCCcEEEEEEEEe
Confidence            66554443332 111111111 1 13467777777643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.7e-21  Score=202.21  Aligned_cols=198  Identities=19%  Similarity=0.223  Sum_probs=93.1

Q ss_pred             ccEEEccCCCCCCCCchhc--CCCCCCCEEEccCCcCCCCCC----ccccCCCCccEEEeeecCCCCcCchhhhCCCCCc
Q 005361          141 LVELSVMGNRLSGPFPKVL--TNITTLKNLSIEGNLFTGSIP----PDIRKLINLQKLILSSNSFTGELPAELTKLTNLN  214 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  214 (700)
                      |++|++++|.+++..|..+  ..+++|++|+|++|.+.+..+    ..+..+++|++|+|++|.+.+..+..+..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            5555555555555555444  455555555555555554333    2223445555555555555544444455555555


Q ss_pred             EEEeecCcCCCC--Ch--hhhcCCCcccEEEccCCCCCCCchh----hhhcCCCCCEEEcCCCCCCCCcccccCccCccE
Q 005361          215 DLRISDNNFSGK--IP--EFIGKWKKIQKLHIQGSSLEGPIPA----SISALTSLTDLRISDLKGSESAFPKLDKMNLKT  286 (700)
Q Consensus       215 ~L~L~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~  286 (700)
                      +|+|++|++.+.  ++  ..+..+++|++|+|++|.++. ++.    .+..+++                       |++
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~-----------------------L~~  228 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQ-----------------------PHS  228 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCC-----------------------CSS
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCC-----------------------CCE
Confidence            555555554321  11  112344455555555555541 222    1234444                       445


Q ss_pred             EEcccCCCCCCCchhhcCC---CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCc
Q 005361          287 LILTKCLIHGEIPDYIGDM---TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNN  363 (700)
Q Consensus       287 L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~  363 (700)
                      |+|++|++++..|..+..+   ++|++|+|++|+|+ .+|..+.  ++|+.|+|++|++++......+++++.|+|++|+
T Consensus       229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence            5555555554444443333   45555555555555 3343332  4555555555555542111222445555555555


Q ss_pred             cc
Q 005361          364 FT  365 (700)
Q Consensus       364 l~  365 (700)
                      ++
T Consensus       306 l~  307 (310)
T 4glp_A          306 FL  307 (310)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.1e-23  Score=219.25  Aligned_cols=257  Identities=18%  Similarity=0.242  Sum_probs=182.0

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcc----ccccccc--ccEEEccCCCCCCCCchhcCCC-----CC
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFS----PQWASLQ--LVELSVMGNRLSGPFPKVLTNI-----TT  164 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~--L~~L~L~~n~l~~~~p~~~~~l-----~~  164 (700)
                      .++++.+++++.+|..+...++|++|+|++|.+++..+    ..+..++  |++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35678888888888777777779999999999887766    5565554  8889999998887767666654     88


Q ss_pred             CCEEEccCCcCCCCCCccc----cCC-CCccEEEeeecCCCCcCchhhh----C-CCCCcEEEeecCcCCCCC----hhh
Q 005361          165 LKNLSIEGNLFTGSIPPDI----RKL-INLQKLILSSNSFTGELPAELT----K-LTNLNDLRISDNNFSGKI----PEF  230 (700)
Q Consensus       165 L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~----~~~  230 (700)
                      |++|+|++|.+++..+..+    ..+ ++|+.|+|++|.++...+..+.    . .++|++|+|++|.+++..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999998886655543    344 7889999998888766554433    3 358888999888887543    334


Q ss_pred             hcCCC-cccEEEccCCCCCCCchhhhh----cC-CCCCEEEcCCCCCCCCcccc----cCc--cCccEEEcccCCCCCCC
Q 005361          231 IGKWK-KIQKLHIQGSSLEGPIPASIS----AL-TSLTDLRISDLKGSESAFPK----LDK--MNLKTLILTKCLIHGEI  298 (700)
Q Consensus       231 l~~l~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~----l~~--~~L~~L~L~~n~l~~~~  298 (700)
                      +..++ +|++|+|++|.+++..+..+.    .+ ++|+.|++++|.+.......    +..  ++|++|+|++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 888888888888776665443    34 58888888887766543322    222  47888888888887654


Q ss_pred             c----hhhcCCCCCCEEeccCCCCCCCChh-------hHhcCCCCCEEEccCCcCCCCCchhhhc
Q 005361          299 P----DYIGDMTKLKNIDLSFNNLTGGIPT-------TFEKLAKTNFMYLTGNKLTGPVPKYIFN  352 (700)
Q Consensus       299 p----~~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~ip~~~~~  352 (700)
                      +    ..+..+++|+.|+|++|.+.+..+.       .+..+++|+.|++++|++.+..+..+..
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~  306 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN  306 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence            4    2345667888888888876644433       3456677888888888887665555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=2.2e-23  Score=229.03  Aligned_cols=203  Identities=18%  Similarity=0.252  Sum_probs=83.5

Q ss_pred             ccEEEccCCCCCC----CCchhcCCCCCCCEEEccCCcCCCCCCcccc-----CCCCccEEEeeecCCCCc----Cchhh
Q 005361          141 LVELSVMGNRLSG----PFPKVLTNITTLKNLSIEGNLFTGSIPPDIR-----KLINLQKLILSSNSFTGE----LPAEL  207 (700)
Q Consensus       141 L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~  207 (700)
                      |++|++++|.++.    .++..+..+++|++|+|++|.+....+..+.     ..++|++|++++|.++..    ++..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            4444444444442    2344444444444444444444321111111     123444455544444432    12333


Q ss_pred             hCCCCCcEEEeecCcCCCCChhhhc-----CCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCccc-
Q 005361          208 TKLTNLNDLRISDNNFSGKIPEFIG-----KWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFP-  277 (700)
Q Consensus       208 ~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-  277 (700)
                      ..+++|++|++++|.++...+..+.     ..++|+.|++++|.++..    ++..+..+++|+.|++++|.+...... 
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  246 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  246 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence            3444555555554444322222221     133455555555544432    233444445555555554443322111 


Q ss_pred             ---cc-Cc-cCccEEEcccCCCCCC----CchhhcCCCCCCEEeccCCCCCCCChhhHhc-----CCCCCEEEccCCcCC
Q 005361          278 ---KL-DK-MNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK-----LAKTNFMYLTGNKLT  343 (700)
Q Consensus       278 ---~l-~~-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~  343 (700)
                         .+ .. ++|++|+|++|.++..    ++..+..+++|++|+|++|.+++..+..+..     .++|+.|+|++|.++
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence               11 11 4455555555544432    3333444455555555555444322222221     134555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.3e-21  Score=193.10  Aligned_cols=195  Identities=16%  Similarity=0.155  Sum_probs=101.2

Q ss_pred             CCCEEECcCCCCCCCccccccccc-ccEEEccCCC-CCCCCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEE
Q 005361          117 YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNR-LSGPFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLI  193 (700)
Q Consensus       117 ~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~  193 (700)
                      +|++|+|++|.+++..+..|..++ |++|++++|. ++...+..|.++++|++|+|++ |.++...+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            667777777766655554555554 5555555554 5444444555555555555555 555544444455555555555


Q ss_pred             eeecCCCCcCchhhhCCCCCc---EEEeecC-cCCCCChhhhcCCCccc-EEEccCCCCCCCchhhhhcCCCCCEEEcCC
Q 005361          194 LSSNSFTGELPAELTKLTNLN---DLRISDN-NFSGKIPEFIGKWKKIQ-KLHIQGSSLEGPIPASISALTSLTDLRISD  268 (700)
Q Consensus       194 L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  268 (700)
                      +++|.+++ +|. +..+++|+   +|++++| .++...+..|..+++|+ .|++++|.++ .+|.               
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~---------------  173 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG---------------  173 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---------------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---------------
Confidence            55555553 333 44444444   5555554 44433333344444444 4444444443 1111               


Q ss_pred             CCCCCCcccccCccCccEEEcccCC-CCCCCchhhcCC-CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC
Q 005361          269 LKGSESAFPKLDKMNLKTLILTKCL-IHGEIPDYIGDM-TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN  340 (700)
Q Consensus       269 n~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  340 (700)
                              ..+...+|+.|+|++|+ +++..+..|..+ ++|+.|+|++|++++..+.   .+++|+.|+++++
T Consensus       174 --------~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          174 --------YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             --------TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             --------hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence                    11112355555666663 665555566666 6666677766666643332   4556666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=1.4e-20  Score=211.82  Aligned_cols=227  Identities=28%  Similarity=0.347  Sum_probs=156.0

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|+|++|.++. +|.   .+++|++|+|++|.++... .   .++ |++|++++|.+++. |.   .+++|++|+|
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence            467778888777774 333   4677777777777776433 2   334 77777777777643 33   4556666666


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhh-----------------hCCCCCcEEEeecCcCCCCChhhhcC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL-----------------TKLTNLNDLRISDNNFSGKIPEFIGK  233 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~~~l~~  233 (700)
                      ++|+++. +|..   +++|++|++++|.+++ +|..+                 ..+++|+.|++++|.+++ +|.   .
T Consensus       129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~  199 (622)
T 3g06_A          129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---L  199 (622)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---C
T ss_pred             CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---c
Confidence            6666663 3432   3566666666666653 22211                 223666666666666663 332   2


Q ss_pred             CCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEec
Q 005361          234 WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDL  313 (700)
Q Consensus       234 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  313 (700)
                      +++|+.|++++|.++. +|.   .+++|+.|++++|.+...+   -..++|+.|+|++|.|+. +|.   .+++|+.|+|
T Consensus       200 ~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~L  268 (622)
T 3g06_A          200 PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSV  268 (622)
T ss_dssp             CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeC
Confidence            3567777777777663 332   2478999999998877633   122799999999999994 554   6789999999


Q ss_pred             cCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361          314 SFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF  351 (700)
Q Consensus       314 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~  351 (700)
                      ++|+|+ .+|..+..+++|+.|+|++|++++.+|..+.
T Consensus       269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            999999 7788999999999999999999988877653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.3e-22  Score=217.55  Aligned_cols=241  Identities=20%  Similarity=0.271  Sum_probs=152.6

Q ss_pred             cCchhhcCCCCCCEEECcCCCCCCCcc----ccccccc-ccEEEccCCC---CCCCCchhc-------CCCCCCCEEEcc
Q 005361          107 TLPTELSKLRYLKQLDLSRNCLTGSFS----PQWASLQ-LVELSVMGNR---LSGPFPKVL-------TNITTLKNLSIE  171 (700)
Q Consensus       107 ~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~  171 (700)
                      .++..+..+++|++|+|++|.+....+    ..+..++ |++|+|++|.   +++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            355667788888888888888876533    3355566 8888888753   444455544       677888888888


Q ss_pred             CCcCCC----CCCccccCCCCccEEEeeecCCCCcCchh----hhCC---------CCCcEEEeecCcCC-CCCh---hh
Q 005361          172 GNLFTG----SIPPDIRKLINLQKLILSSNSFTGELPAE----LTKL---------TNLNDLRISDNNFS-GKIP---EF  230 (700)
Q Consensus       172 ~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~l~-~~~~---~~  230 (700)
                      +|.+..    .+|..+..+++|++|+|++|.++...+..    +..+         ++|++|+|++|+++ ..++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            888775    35566777788888888888776433332    3333         77888888887776 3334   35


Q ss_pred             hcCCCcccEEEccCCCCCC-----CchhhhhcCCCCCEEEcCCCCCCC---Cccc-ccCc-cCccEEEcccCCCCCC---
Q 005361          231 IGKWKKIQKLHIQGSSLEG-----PIPASISALTSLTDLRISDLKGSE---SAFP-KLDK-MNLKTLILTKCLIHGE---  297 (700)
Q Consensus       231 l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~---~~~~-~l~~-~~L~~L~L~~n~l~~~---  297 (700)
                      +..+++|+.|+|++|.+..     ..+..+..+++|+.|+|++|.+..   ..++ .+.. ++|+.|+|++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            5667777778877777762     233356677777777777765432   1111 1333 5666666666666543   


Q ss_pred             -Cchhhc--CCCCCCEEeccCCCCCC----CChhhH-hcCCCCCEEEccCCcCCCCCc
Q 005361          298 -IPDYIG--DMTKLKNIDLSFNNLTG----GIPTTF-EKLAKTNFMYLTGNKLTGPVP  347 (700)
Q Consensus       298 -~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~ip  347 (700)
                       ++..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|+|++|++++..+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             344442  26666666666666665    255554 446666666666666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=203.54  Aligned_cols=228  Identities=18%  Similarity=0.192  Sum_probs=165.9

Q ss_pred             ccccccccEEEccCCCCCCCCch---hcCCCCCCCEEEccCCcCCCCCCccc--cCCCCccEEEeeecCCCCcCc----h
Q 005361          135 QWASLQLVELSVMGNRLSGPFPK---VLTNITTLKNLSIEGNLFTGSIPPDI--RKLINLQKLILSSNSFTGELP----A  205 (700)
Q Consensus       135 ~~~~l~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~  205 (700)
                      .+....++.|.+.++.++...-.   .+..+++|++|+|++|.+.+..|..+  ..+++|++|+|++|.+++..+    .
T Consensus        60 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           60 TVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             GGSSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             HhhhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            34444577788877776521111   12235679999999999998888887  889999999999999986544    3


Q ss_pred             hhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC--chh--hhhcCCCCCEEEcCCCCCCCCcccccCc
Q 005361          206 ELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPA--SISALTSLTDLRISDLKGSESAFPKLDK  281 (700)
Q Consensus       206 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~  281 (700)
                      .+..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+.  ++.  .+..++                      
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~----------------------  197 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP----------------------  197 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC----------------------
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC----------------------
Confidence            455788899999999988877778888888888888888887542  111  123344                      


Q ss_pred             cCccEEEcccCCCCCCCch----hhcCCCCCCEEeccCCCCCCCChhhHhcC---CCCCEEEccCCcCCCCCchhhhcCC
Q 005361          282 MNLKTLILTKCLIHGEIPD----YIGDMTKLKNIDLSFNNLTGGIPTTFEKL---AKTNFMYLTGNKLTGPVPKYIFNSN  354 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~ip~~~~~~l  354 (700)
                       +|++|+|++|+++. ++.    .+..+++|++|+|++|++++..|..+..+   ++|+.|+|++|+++ .+|..+++++
T Consensus       198 -~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L  274 (310)
T 4glp_A          198 -AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKL  274 (310)
T ss_dssp             -CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCC
T ss_pred             -CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCC
Confidence             45555566677652 232    35788999999999999998878777776   79999999999999 7898888899


Q ss_pred             CeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCC
Q 005361          355 KNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLD  393 (700)
Q Consensus       355 ~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~  393 (700)
                      +.|+|++|++++. |....+     .-++.+....|.+.
T Consensus       275 ~~L~Ls~N~l~~~-~~~~~l-----~~L~~L~L~~N~l~  307 (310)
T 4glp_A          275 RVLDLSSNRLNRA-PQPDEL-----PEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCEECCSCCCCSC-CCTTSC-----CCCSCEECSSTTTS
T ss_pred             CEEECCCCcCCCC-chhhhC-----CCccEEECcCCCCC
Confidence            9999999999974 322212     33445555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=2.4e-21  Score=192.98  Aligned_cols=196  Identities=15%  Similarity=0.141  Sum_probs=158.9

Q ss_pred             cccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc-CCCCCCccccCCCCccEEEeee-cCCCCcCchhhhCCCCCcEEE
Q 005361          140 QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL-FTGSIPPDIRKLINLQKLILSS-NSFTGELPAELTKLTNLNDLR  217 (700)
Q Consensus       140 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  217 (700)
                      .|++|++++|++++..+..|.++++|++|+|++|+ ++...+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            48999999999997777788999999999999997 8766666888999999999998 899876667888899999999


Q ss_pred             eecCcCCCCChhhhcCCCccc---EEEccCC-CCCCCchhhhhcCCCCC-EEEcCCCCCCCCcccccCccCccEEEcccC
Q 005361          218 ISDNNFSGKIPEFIGKWKKIQ---KLHIQGS-SLEGPIPASISALTSLT-DLRISDLKGSESAFPKLDKMNLKTLILTKC  292 (700)
Q Consensus       218 L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n  292 (700)
                      +++|.+++ +|. +..+++|+   .|++++| .++...+..|..+++|+ .                       |++++|
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~-----------------------L~l~~n  166 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT-----------------------LKLYNN  166 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE-----------------------EECCSC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE-----------------------EEcCCC
Confidence            99999885 555 77777777   8888888 77755555566555555 4                       455557


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCC-CCCCChhhHhcC-CCCCEEEccCCcCCCCCchhhhcCCCeeeeecC
Q 005361          293 LIHGEIPDYIGDMTKLKNIDLSFNN-LTGGIPTTFEKL-AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLN  362 (700)
Q Consensus       293 ~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N  362 (700)
                      +++...+..+.. ++|+.|+|++|+ +++..+..|..+ ++|+.|++++|+++ .+|...+.+++.|+++++
T Consensus       167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC
T ss_pred             CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCc
Confidence            777444445555 899999999995 997778889999 99999999999998 677777889999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1e-22  Score=218.37  Aligned_cols=237  Identities=17%  Similarity=0.174  Sum_probs=191.3

Q ss_pred             ccccccccc-ccEEEccCCCCCCCCc----hhcCCCCCCCEEEccCCcCC---CCCCccc-------cCCCCccEEEeee
Q 005361          132 FSPQWASLQ-LVELSVMGNRLSGPFP----KVLTNITTLKNLSIEGNLFT---GSIPPDI-------RKLINLQKLILSS  196 (700)
Q Consensus       132 ~~~~~~~l~-L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~---~~~p~~~-------~~l~~L~~L~L~~  196 (700)
                      ++..+..++ |++|+|++|.++...+    ..+..+++|++|+|++|.+.   +.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            445556666 9999999999986533    44778999999999997544   4455554       6889999999999


Q ss_pred             cCCCC----cCchhhhCCCCCcEEEeecCcCCCCChhhh----cCC---------CcccEEEccCCCCC-CCch---hhh
Q 005361          197 NSFTG----ELPAELTKLTNLNDLRISDNNFSGKIPEFI----GKW---------KKIQKLHIQGSSLE-GPIP---ASI  255 (700)
Q Consensus       197 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~~  255 (700)
                      |.+..    .++..+..+++|++|+|++|.++...+..+    ..+         ++|+.|+|++|.+. ..++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99997    477788999999999999999974433333    334         89999999999997 3445   467


Q ss_pred             hcCCCCCEEEcCCCCCCCCc----cc-ccCc-cCccEEEcccCCCC----CCCchhhcCCCCCCEEeccCCCCCCC----
Q 005361          256 SALTSLTDLRISDLKGSESA----FP-KLDK-MNLKTLILTKCLIH----GEIPDYIGDMTKLKNIDLSFNNLTGG----  321 (700)
Q Consensus       256 ~~l~~L~~L~l~~n~~~~~~----~~-~l~~-~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----  321 (700)
                      ..+++|+.|++++|.+....    .+ .+.. ++|+.|+|++|.++    ..+|..+..+++|+.|+|++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            88999999999998876432    33 4445 89999999999996    56788889999999999999999865    


Q ss_pred             ChhhHhc--CCCCCEEEccCCcCCC----CCchhh---hcCCCeeeeecCcccccC
Q 005361          322 IPTTFEK--LAKTNFMYLTGNKLTG----PVPKYI---FNSNKNVDISLNNFTWES  368 (700)
Q Consensus       322 ~p~~~~~--l~~L~~L~L~~N~l~~----~ip~~~---~~~l~~L~ls~N~l~~~~  368 (700)
                      ++..+..  +++|+.|+|++|++++    .+|..+   +++++.|++++|++++..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            4666644  8999999999999997    488877   468999999999887543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.2e-20  Score=193.34  Aligned_cols=194  Identities=23%  Similarity=0.330  Sum_probs=120.6

Q ss_pred             hcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361          112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ  190 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (700)
                      +.++++|++|++++|.+... + .+..++ |++|++++|.+++..+  +..+++|++|+|++|.+.+ + ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            34567777777777777643 2 345555 7777777776664433  6666677777777766663 2 2466666666


Q ss_pred             EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361          191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK  270 (700)
Q Consensus       191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  270 (700)
                      .|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..++           
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----------  173 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS-----------  173 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT-----------
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC-----------
Confidence            666666666642 2 25666666666666666654332  5556666666666666553222  44444           


Q ss_pred             CCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361          271 GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       271 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                                  +|+.|+|++|.+++..+  +..+++|+.|+|++|++++..+  +..+++|+.|+|++|++++
T Consensus       174 ------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          174 ------------KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             ------------TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             ------------CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence                        44555555566654333  6677788888888888875443  6778888888888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.8e-20  Score=188.07  Aligned_cols=182  Identities=20%  Similarity=0.278  Sum_probs=146.4

Q ss_pred             CCeeeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhc
Q 005361           81 SNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVL  159 (700)
Q Consensus        81 ~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~  159 (700)
                      .|++|.     ...+.++++++.++. +|..+.  ++|+.|+|++|.+.+..+..+..++ |++|+|++|.+++..+..|
T Consensus         8 ~gC~C~-----~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A            8 TGCTCN-----EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             HSSEEE-----GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CceEcC-----CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence            466773     235678889888874 444443  6899999999999988888888887 9999999999988888888


Q ss_pred             CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361          160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK  239 (700)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  239 (700)
                      .++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.
T Consensus        80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence            88899999999999988777777888889999999999888666667788888888888888888777777888888888


Q ss_pred             EEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361          240 LHIQGSSLEGPIPASISALTSLTDLRISDLK  270 (700)
Q Consensus       240 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  270 (700)
                      |+|++|.+++..+..+..+++|+.|++++|.
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            8888888887766677777777777666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=7.2e-22  Score=209.67  Aligned_cols=248  Identities=16%  Similarity=0.164  Sum_probs=195.1

Q ss_pred             EEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCc----hhcCCCC-CCCEEEccCCcCCCCCCccccCC-----CC
Q 005361          120 QLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFP----KVLTNIT-TLKNLSIEGNLFTGSIPPDIRKL-----IN  188 (700)
Q Consensus       120 ~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~  188 (700)
                      .+.|+.|.+++.+|..+...+ |++|+|++|.+++..+    ..+..++ +|++|+|++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            468899999999998888888 9999999999997777    7788898 89999999999997777777765     99


Q ss_pred             ccEEEeeecCCCCcCchh----hhCC-CCCcEEEeecCcCCCCChhhh----cC-CCcccEEEccCCCCCCCc----hhh
Q 005361          189 LQKLILSSNSFTGELPAE----LTKL-TNLNDLRISDNNFSGKIPEFI----GK-WKKIQKLHIQGSSLEGPI----PAS  254 (700)
Q Consensus       189 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~----~~~  254 (700)
                      |++|+|++|.+++..+..    +..+ ++|++|+|++|.+++..+..+    .. .++|++|+|++|.+....    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998766654    4445 899999999999987766554    33 369999999999998643    344


Q ss_pred             hhcCC-CCCEEEcCCCCCCCCcccc----cCc--cCccEEEcccCCCCCC----CchhhcC-CCCCCEEeccCCCCCCCC
Q 005361          255 ISALT-SLTDLRISDLKGSESAFPK----LDK--MNLKTLILTKCLIHGE----IPDYIGD-MTKLKNIDLSFNNLTGGI  322 (700)
Q Consensus       255 ~~~l~-~L~~L~l~~n~~~~~~~~~----l~~--~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~  322 (700)
                      +..++ +|+.|++++|.+.......    +..  .+|+.|+|++|.+++.    ++..+.. .++|+.|+|++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            55665 9999999998876655432    222  4899999999999863    4445554 469999999999999766


Q ss_pred             hhh----HhcCCCCCEEEccCCcCCCCCchhh---------hcCCCeeeeecCccccc
Q 005361          323 PTT----FEKLAKTNFMYLTGNKLTGPVPKYI---------FNSNKNVDISLNNFTWE  367 (700)
Q Consensus       323 p~~----~~~l~~L~~L~L~~N~l~~~ip~~~---------~~~l~~L~ls~N~l~~~  367 (700)
                      +..    +..+++|+.|+|++|.+.+..+..+         .+.++.||+++|++...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            643    4667899999999999764443322         12467899999987754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=8e-20  Score=189.17  Aligned_cols=189  Identities=17%  Similarity=0.292  Sum_probs=118.1

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      |++|++++|.++. ++ .+..+++|++|+|++|.+.+. +. +..+++|++|++++|.+++. + .+..+++|++|++++
T Consensus        43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCC
Confidence            5555555555542 22 345555555555555555532 22 55555555555555555432 2 344555555555555


Q ss_pred             CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361          221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD  300 (700)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~  300 (700)
                      |.+++. +. +..+++|+.|++++|.+++..+  +..+                       ++|+.|+|++|.+++..+ 
T Consensus       117 n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-----------------------~~L~~L~l~~n~l~~~~~-  168 (308)
T 1h6u_A          117 TQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGL-----------------------TNLQYLSIGNAQVSDLTP-  168 (308)
T ss_dssp             SCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGC-----------------------TTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCC-----------------------CCccEEEccCCcCCCChh-
Confidence            555432 21 4445555555555555443222  3333                       566666677777775443 


Q ss_pred             hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccc
Q 005361          301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTW  366 (700)
Q Consensus       301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~  366 (700)
                       +..+++|+.|+|++|++++..+  +..+++|+.|+|++|++++..+-.-+++++.|++++|++++
T Consensus       169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence             8899999999999999996544  88999999999999999976654445689999999998874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=8.5e-20  Score=202.96  Aligned_cols=216  Identities=20%  Similarity=0.265  Sum_probs=136.7

Q ss_pred             CCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeee
Q 005361          117 YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSS  196 (700)
Q Consensus       117 ~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (700)
                      +|+.|+|++|.+++ +|..+. ..|++|+|++|.++ .+|   ..+++|++|+|++|++++ +|. +..  +|+.|+|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            78899999999887 444332 23888888888888 555   456788888888888885 666 554  888888888


Q ss_pred             cCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcc
Q 005361          197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAF  276 (700)
Q Consensus       197 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  276 (700)
                      |.+++ +|.   .+++|+.|+|++|.+++ +|.   .+++|+.|+|++|.+++ +|. +.  ++|+.|+           
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~-----------  186 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALD-----------  186 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEE-----------
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEE-----------
Confidence            88875 554   57788888888888875 444   46677788888777775 444 33  4455554           


Q ss_pred             cccCccCccEEEcccCCCCCCCchhhcCCCCC-------CEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchh
Q 005361          277 PKLDKMNLKTLILTKCLIHGEIPDYIGDMTKL-------KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY  349 (700)
Q Consensus       277 ~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  349 (700)
                                  |++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..
T Consensus       187 ------------Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          187 ------------VSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             ------------CCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             ------------CcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence                        5555555 3333 322  44       77777777777 45666666777777777777777776665


Q ss_pred             hhc--C-------CCeeeeecCcccccCCCCCCCCCCCccceec
Q 005361          350 IFN--S-------NKNVDISLNNFTWESSDPIECPRGSVNLVES  384 (700)
Q Consensus       350 ~~~--~-------l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~  384 (700)
                      +..  .       ...+++++|.+.. +|.+ .|+|...|+.++
T Consensus       250 l~~l~~~~~~~~~~~~~~l~~~~~~~-~~~p-~~~~~~~Wl~~~  291 (571)
T 3cvr_A          250 LSQQTAQPDYHGPRIYFSMSDGQQNT-LHRP-LADAVTAWFPEN  291 (571)
T ss_dssp             HHHHHHSCC---CEEECCC-----------C-CSHHHHTTCC--
T ss_pred             HHHhhcCccccCCeeEEeeccccccc-cccc-chhhHHHHhhhh
Confidence            532  0       1134555554432 2334 588877776554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=3.7e-21  Score=202.00  Aligned_cols=234  Identities=18%  Similarity=0.221  Sum_probs=186.7

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC-ccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS-FSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      .+++.|+++++.+.+..+. +..+++|++|+|++|.+.+. ++..+..++ |++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5789999999999887665 66899999999999998865 777888888 99999999999988889999999999999


Q ss_pred             ccCC-cCCC-CCCccccCCCCccEEEeeec-CCCCc-CchhhhCCC-CCcEEEeecC--cCC-CCChhhhcCCCcccEEE
Q 005361          170 IEGN-LFTG-SIPPDIRKLINLQKLILSSN-SFTGE-LPAELTKLT-NLNDLRISDN--NFS-GKIPEFIGKWKKIQKLH  241 (700)
Q Consensus       170 L~~n-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~  241 (700)
                      |++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 6764 25666888999999999999 88854 577788999 9999999999  555 45677788899999999


Q ss_pred             ccCCC-CCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          242 IQGSS-LEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       242 L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      +++|. +++..+..+..+++|+.|++++|.                      .+.......+..+++|+.|+|++| +..
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~----------------------~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCY----------------------DIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCT----------------------TCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCC----------------------CCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence            99999 776777788888888888887753                      111111124567888999999988 543


Q ss_pred             CChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361          321 GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF  351 (700)
Q Consensus       321 ~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~  351 (700)
                      ..-..+.  ..|..|++++|++++..|..+.
T Consensus       286 ~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          286 GTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             HHHHHHH--hhCcceEEecccCccccCCccc
Confidence            3322232  2366666899999988887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=7.8e-20  Score=179.40  Aligned_cols=165  Identities=19%  Similarity=0.245  Sum_probs=80.2

Q ss_pred             CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361          188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS  267 (700)
Q Consensus       188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  267 (700)
                      +|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|+.    
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~----  108 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL----  108 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE----
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE----
Confidence            4444444444444333334444444444444444444444444444444444444444444322222232322222    


Q ss_pred             CCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCc
Q 005361          268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVP  347 (700)
Q Consensus       268 ~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  347 (700)
                                         |+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+              
T Consensus       109 -------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--------------  155 (220)
T 2v9t_B          109 -------------------LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ--------------  155 (220)
T ss_dssp             -------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC--------------
T ss_pred             -------------------EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC--------------
Confidence                               22233344444444455555555555555555554444455444444              


Q ss_pred             hhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361          348 KYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH  413 (700)
Q Consensus       348 ~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~  413 (700)
                              .|+|++|++        .|+|...|+.+|+......        .....|..|...++
T Consensus       156 --------~L~L~~N~~--------~c~c~l~~l~~~l~~~~~~--------~~~~~C~~P~~l~g  197 (220)
T 2v9t_B          156 --------TMHLAQNPF--------ICDCHLKWLADYLHTNPIE--------TSGARCTSPRRLAN  197 (220)
T ss_dssp             --------EEECCSSCE--------ECSGGGHHHHHHHHHCCCB--------CSCCBEEESGGGTT
T ss_pred             --------EEEeCCCCc--------CCCCccHHHHHHHHhCCCC--------ccCCCcCCchHHcC
Confidence                    455555533        3999999998887644211        13456776655544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2e-19  Score=189.85  Aligned_cols=237  Identities=14%  Similarity=0.093  Sum_probs=140.5

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCc-hhcCCCCCCCE-EEccC
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFP-KVLTNITTLKN-LSIEG  172 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~  172 (700)
                      .++.++++++ .+|..+  .+++++|+|++|+|+.+.+.+|..++ |++|+|++|.+.+.+| ..|.++++|++ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4566677777 345444  35778888888887766556666666 7777777776654443 34566666554 44455


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec-CcCCCCChhhhcCCC-cccEEEccCCCCCCC
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD-NNFSGKIPEFIGKWK-KIQKLHIQGSSLEGP  250 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~  250 (700)
                      |++....|..|..+++|++|++++|.++...+..+....++..|++.+ +.+....+..|..+. .++.|+|++|.++  
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--
Confidence            666655556666666666666666666654444455555566666644 344433333344332 3555555555554  


Q ss_pred             chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEccc-CCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361          251 IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTK-CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL  329 (700)
Q Consensus       251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  329 (700)
                                            ......+...+|++|++.+ |.++...++.|..+++|+.|||++|+|+...+..|   
T Consensus       168 ----------------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---  222 (350)
T 4ay9_X          168 ----------------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---  222 (350)
T ss_dssp             ----------------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---
T ss_pred             ----------------------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---
Confidence                                  2222222234566667754 56665555678888999999999999985555444   


Q ss_pred             CCCCEEEccCCcCCCCCch-hhhcCCCeeeeecC
Q 005361          330 AKTNFMYLTGNKLTGPVPK-YIFNSNKNVDISLN  362 (700)
Q Consensus       330 ~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~ls~N  362 (700)
                      .+|+.|.+.++.--..+|. .-+.+|+.++++++
T Consensus       223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            4555665544433335664 22457778887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.2e-19  Score=172.70  Aligned_cols=157  Identities=21%  Similarity=0.196  Sum_probs=76.4

Q ss_pred             CCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361          164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  243 (700)
                      +|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            55555555555554444444555555555555555554433444555555555555555554444444455555555555


Q ss_pred             CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh
Q 005361          244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP  323 (700)
Q Consensus       244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  323 (700)
                      +|.+++..+..+..+++|+.|                       +|++|.+++..+..+..+++|+.|+|++|.+.+   
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L-----------------------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDL-----------------------RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEE-----------------------ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CCcCcccCHhHhccCCcCCEE-----------------------ECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            555443333333333333332                       233344443333444555555555555555543   


Q ss_pred             hhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361          324 TTFEKLAKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       324 ~~~~~l~~L~~L~L~~N~l~~~ip~~~  350 (700)
                          .+++|+.|+++.|+++|.+|..+
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccC
Confidence                22345555555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=2e-19  Score=176.41  Aligned_cols=182  Identities=20%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             EEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCC
Q 005361          167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS  245 (700)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  245 (700)
                      .+++++|.++ .+|..+.  ..++.|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            4444444444 2333221  233455555555543322 23445555555555555555444444555555555555555


Q ss_pred             CCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhh
Q 005361          246 SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT  325 (700)
Q Consensus       246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  325 (700)
                      .+++..+..|..+++|+.|+                       |++|+|++..|..|..+++|+.|+|++|+|++..|..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~-----------------------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLM-----------------------LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEE-----------------------CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             ccCccCHhHhcCCcCCCEEE-----------------------CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence            55544444444444333333                       3334444445555666666666666666666666666


Q ss_pred             HhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCC
Q 005361          326 FEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPC  405 (700)
Q Consensus       326 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  405 (700)
                      |..+++|+.|+|++|.++                              |+|...|+.+|+.....        ...+..|
T Consensus       149 ~~~l~~L~~L~L~~N~l~------------------------------c~c~l~~l~~~~~~~~~--------~~~~~~C  190 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFN------------------------------CNCYLAWLGEWLRKKRI--------VTGNPRC  190 (220)
T ss_dssp             TTTCTTCCEEECCSCCEE------------------------------CSGGGHHHHHHHHHSCC--------BCCCCEE
T ss_pred             hcCCCCCCEEEecCcCCc------------------------------CCCchHHHHHHHHhcCc--------cccCCcc
Confidence            666666665555555444                              88988888888764321        1234466


Q ss_pred             CCCCCCc
Q 005361          406 SAPADQY  412 (700)
Q Consensus       406 ~~p~~~~  412 (700)
                      ..|...+
T Consensus       191 ~~P~~l~  197 (220)
T 2v70_A          191 QKPYFLK  197 (220)
T ss_dssp             EESGGGT
T ss_pred             CCChHHC
Confidence            6665444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=169.90  Aligned_cols=163  Identities=21%  Similarity=0.249  Sum_probs=90.3

Q ss_pred             CCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361          115 LRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI  193 (700)
Q Consensus       115 l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (700)
                      .++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35777788877777765555555555 66666666666654444455566666666666665544444455555555555


Q ss_pred             eeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361          194 LSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE  273 (700)
Q Consensus       194 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  273 (700)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..                      
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----------------------  164 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----------------------  164 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----------------------
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----------------------
Confidence            5555555444444455555555555555555443334444444444444444333211                      


Q ss_pred             CcccccCccCccEEEcccCCCCCCCchhhcCCCC
Q 005361          274 SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTK  307 (700)
Q Consensus       274 ~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~  307 (700)
                              ++|+.|+++.|+++|.+|..++.++.
T Consensus       165 --------~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          165 --------PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --------CCHHHHHHHHHhCCceeeccCccccC
Confidence                    24555566666777777766655443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=5.3e-19  Score=186.57  Aligned_cols=222  Identities=17%  Similarity=0.105  Sum_probs=136.1

Q ss_pred             EEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCC-ccccCCCCccE-EEeeec
Q 005361          120 QLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIP-PDIRKLINLQK-LILSSN  197 (700)
Q Consensus       120 ~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~n  197 (700)
                      +++.++++++.+ |..+ ...+++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.+..|
T Consensus        13 ~v~C~~~~Lt~i-P~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEI-PSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSC-CTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCcc-CcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            455556666533 3222 0126666666666664444456666666666666666544333 24555555543 344455


Q ss_pred             CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccC-CCCCCCchhhhhcCCCCCEEEcCCCCCCCCcc
Q 005361          198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQG-SSLEGPIPASISALTSLTDLRISDLKGSESAF  276 (700)
Q Consensus       198 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  276 (700)
                      +++...+..|..+++|++|++++|.++...+..+....++..|++.+ +.+.                        ....
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~l~~  146 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------TIER  146 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------EECT
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------cccc
Confidence            56555555556666666666666665544444444444455555533 2222                        2122


Q ss_pred             cccCc--cCccEEEcccCCCCCCCchhhcCCCCCCEEeccC-CCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcC
Q 005361          277 PKLDK--MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSF-NNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNS  353 (700)
Q Consensus       277 ~~l~~--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~  353 (700)
                      ..+..  ..++.|+|++|+|+...+..| ...+|+.|++++ |.++...+..|..+++|+.|+|++|+|+ .+|...+.+
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~  224 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN  224 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTT
T ss_pred             cchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhcc
Confidence            22222  467889999999995555544 457899999985 6777555668899999999999999999 788888888


Q ss_pred             CCeeeeecCcccccCC
Q 005361          354 NKNVDISLNNFTWESS  369 (700)
Q Consensus       354 l~~L~ls~N~l~~~~p  369 (700)
                      ++.|.+.++.-...+|
T Consensus       225 L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLP  240 (350)
T ss_dssp             CCEEECTTCTTCCCCC
T ss_pred             chHhhhccCCCcCcCC
Confidence            9988887775444555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.3e-18  Score=193.41  Aligned_cols=203  Identities=25%  Similarity=0.343  Sum_probs=161.9

Q ss_pred             CCe-eeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchh
Q 005361           81 SNV-TCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKV  158 (700)
Q Consensus        81 ~~v-~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~  158 (700)
                      .++ .|.+    .+++.|+|++|.+++ +|..+  +++|++|+|++|.++. +|   ..++ |++|++++|.+++ +|. 
T Consensus        51 ~~l~~C~~----~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-  117 (571)
T 3cvr_A           51 SLLKECLI----NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-  117 (571)
T ss_dssp             HHHHHHHH----TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred             hhcccccc----CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-
Confidence            455 5654    379999999999997 66555  4899999999999994 55   3455 9999999999997 666 


Q ss_pred             cCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc
Q 005361          159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ  238 (700)
Q Consensus       159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  238 (700)
                      +.+  +|++|+|++|.+++ +|.   .+++|+.|+|++|.+++ +|.   .+++|+.|+|++|.+++ +|. +.  ++|+
T Consensus       118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~  183 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE  183 (571)
T ss_dssp             CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred             hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence            665  99999999999996 666   68999999999999996 565   67899999999999996 666 55  8999


Q ss_pred             EEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCC
Q 005361          239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNL  318 (700)
Q Consensus       239 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  318 (700)
                      .|+|++|.++ .+|. +..  +|     ..           ....|+.|+|++|.|+ .+|..+..+++|+.|+|++|.|
T Consensus       184 ~L~Ls~N~L~-~lp~-~~~--~L-----~~-----------~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          184 ALDVSTNLLE-SLPA-VPV--RN-----HH-----------SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEECCSSCCS-SCCC-CC--------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred             EEECcCCCCC-chhh-HHH--hh-----hc-----------ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence            9999999998 4554 332  22     00           0135688889999998 5677777799999999999999


Q ss_pred             CCCChhhHhcCCC
Q 005361          319 TGGIPTTFEKLAK  331 (700)
Q Consensus       319 ~~~~p~~~~~l~~  331 (700)
                      ++.+|..+..++.
T Consensus       243 ~~~~p~~l~~l~~  255 (571)
T 3cvr_A          243 SSRIRESLSQQTA  255 (571)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHhhc
Confidence            9999988877643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=5.7e-19  Score=187.13  Aligned_cols=84  Identities=18%  Similarity=0.174  Sum_probs=36.8

Q ss_pred             CCEEEccCCcCCCCCCcccc-CCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361          165 LKNLSIEGNLFTGSIPPDIR-KLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       165 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  243 (700)
                      |+.|+|++|++++..+..|. ++++|+.|+|++|.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444444444433333333 44444444444444443333444444444444444444443333334444444444444


Q ss_pred             CCCCC
Q 005361          244 GSSLE  248 (700)
Q Consensus       244 ~n~l~  248 (700)
                      +|.+.
T Consensus       121 ~N~i~  125 (361)
T 2xot_A          121 NNHIV  125 (361)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            44443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.3e-17  Score=170.86  Aligned_cols=169  Identities=22%  Similarity=0.349  Sum_probs=87.2

Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361          161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL  240 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  240 (700)
                      .+++|++|++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence            345555555555555422 2 24555555555555555553322  5555556666665555553 22 25555566666


Q ss_pred             EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361          241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      ++++|.+.+.  ..+..+++|+.|++++|.+...  +.+.. ++|+.|+|++|.+++..+  +..+++|+.|+|++|+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            6666655532  2345555555555554433322  22222 344444555555554333  555666666666666665


Q ss_pred             CCChhhHhcCCCCCEEEccCCcCC
Q 005361          320 GGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       320 ~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      + ++ .+..+++|+.|++++|+++
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             C-Ch-hhccCCCCCEEECcCCccc
Confidence            3 23 2555666666666666555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.6e-17  Score=163.93  Aligned_cols=133  Identities=24%  Similarity=0.303  Sum_probs=64.4

Q ss_pred             CCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEc
Q 005361          187 INLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRI  266 (700)
Q Consensus       187 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  266 (700)
                      ++|+.|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            34444444444444433444444444444444444444333333444444444444444444333333333333333332


Q ss_pred             CCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          267 SDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       267 ~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                                             ++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus       120 -----------------------s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 -----------------------CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             -----------------------CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             -----------------------cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence                                   223333 33444555666666666666666555555666666666666666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=8.2e-18  Score=189.10  Aligned_cols=170  Identities=23%  Similarity=0.347  Sum_probs=94.9

Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361          161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL  240 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  240 (700)
                      .+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++ ++ .+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            34445555555555442 22 34445555555555555543322  4455555555555555543 12 34455555555


Q ss_pred             EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361          241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      +|++|.+.+.  ..+..+++|+.|+|++|.+...  +.+.. ++|+.|+|++|.|++..|  +..+++|+.|+|++|+|+
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            5555555532  2355555555555555544433  33333 566666666777775555  677778888888888877


Q ss_pred             CCChhhHhcCCCCCEEEccCCcCCC
Q 005361          320 GGIPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       320 ~~~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                      +. + .+..+++|+.|+|++|++++
T Consensus       189 ~l-~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          189 DL-R-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             BC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred             CC-h-HHccCCCCCEEEccCCcCcC
Confidence            53 3 57777888888888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.7e-17  Score=186.41  Aligned_cols=147  Identities=22%  Similarity=0.365  Sum_probs=81.3

Q ss_pred             cCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK  191 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  191 (700)
                      ..|++|+.|++++|.+... + .+..++ |+.|+|++|.+++..+  +..+++|++|+|++|.+.+ +| .+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence            4555666666666665543 2 244444 6666666666654433  5556666666666666553 22 4555666666


Q ss_pred             EEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCC
Q 005361          192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG  271 (700)
Q Consensus       192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  271 (700)
                      |+|++|.+++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            66666666532  2355566666666666666543  345556666666666666654433  55555555555554433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=3.6e-17  Score=161.46  Aligned_cols=136  Identities=23%  Similarity=0.272  Sum_probs=114.7

Q ss_pred             CCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEe
Q 005361          116 RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLIL  194 (700)
Q Consensus       116 ~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (700)
                      ++|++|+|++|.+.+..+..+..++ |++|+|++|.++...+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            7899999999999988888888887 999999999888666677888899999999999888766667888889999999


Q ss_pred             eecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       195 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      ++|.++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.+..+
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999888 677788888889999999888887777778888888888888888876543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=162.21  Aligned_cols=155  Identities=17%  Similarity=0.230  Sum_probs=127.6

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcc-ccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFS-PQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      +.++++++.++. +|..+  .+.+++|+|++|.+++..+ ..|..++ |++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            378889998875 45544  3457899999999987754 4577777 99999999998877777888899999999999


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+.+..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99887777778888999999999998888778888888889999999888888778888888888888888888876443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=1.6e-18  Score=196.57  Aligned_cols=273  Identities=13%  Similarity=0.079  Sum_probs=182.9

Q ss_pred             cEEEEEecCCCCCC----cCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEcc--------------------
Q 005361           93 HVVTIALKAQNLTG----TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVM--------------------  147 (700)
Q Consensus        93 ~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~--------------------  147 (700)
                      +++.|+++++.+++    .++..+.++++|++|+|++|.+.+ ++..+..++ |++|+++                    
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            45555665555542    223334456666666666665543 233333333 4444443                    


Q ss_pred             -------CCCCCCCCchhcCCCCCCCEEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361          148 -------GNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS  219 (700)
Q Consensus       148 -------~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  219 (700)
                             ++. ...+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++++.....++..+..+++|++|+++
T Consensus       272 L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          272 LCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence                   221 22456667778899999999999763322 335789999999999432223344455778999999999


Q ss_pred             c-----------CcCCCC-ChhhhcCCCcccEEEccCCCCCCCchhhhhc-CCCCCEEEcC----CCCCCCCc----ccc
Q 005361          220 D-----------NNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIPASISA-LTSLTDLRIS----DLKGSESA----FPK  278 (700)
Q Consensus       220 ~-----------n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~----~~~  278 (700)
                      +           |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .+.+...+    ++.
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            3           556533 2333456899999999999998777777765 9999999996    34444432    222


Q ss_pred             -cCc-cCccEEEcccCC--CCCCCchhh-cCCCCCCEEeccCCCCCC-CChhhHhcCCCCCEEEccCCcCCCCCchhh--
Q 005361          279 -LDK-MNLKTLILTKCL--IHGEIPDYI-GDMTKLKNIDLSFNNLTG-GIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--  350 (700)
Q Consensus       279 -l~~-~~L~~L~L~~n~--l~~~~p~~~-~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--  350 (700)
                       +.. ++|+.|+|+.|.  +++..+..+ ..+++|+.|+|++|++++ .++..+..+++|+.|+|++|.+++.....+  
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence             333 789999997543  665444444 358999999999999985 345566889999999999999875533333  


Q ss_pred             -hcCCCeeeeecCccccc
Q 005361          351 -FNSNKNVDISLNNFTWE  367 (700)
Q Consensus       351 -~~~l~~L~ls~N~l~~~  367 (700)
                       +++++.|+|++|+++..
T Consensus       511 ~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HCSSCCEEEEESCBCCTT
T ss_pred             hcCccCeeECcCCcCCHH
Confidence             46899999999998755

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=2.7e-17  Score=168.56  Aligned_cols=171  Identities=20%  Similarity=0.354  Sum_probs=95.8

Q ss_pred             cCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK  191 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  191 (700)
                      ..+++|+.|++++|.+... + .+..++ |++|++++|.+++..+  +..+++|++|+|++|.+.+ + ..+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            4455666666666665543 2 234444 5556666655554333  5566666666666666553 2 23555566666


Q ss_pred             EEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCC
Q 005361          192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG  271 (700)
Q Consensus       192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  271 (700)
                      |++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|          
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L----------  180 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL----------  180 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC----------
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc----------
Confidence            66666655532  3455556666666666665543  345555556666666665554332  4444444          


Q ss_pred             CCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       272 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                                   +.|+|++|.+++ ++ .+..+++|+.|+|++|+++.
T Consensus       181 -------------~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 -------------QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -------------CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -------------CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence                         444455555553 23 36677888888888888774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=3.3e-17  Score=160.60  Aligned_cols=152  Identities=21%  Similarity=0.306  Sum_probs=117.7

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN  173 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  173 (700)
                      +.++++++.++. +|..+.  ++|+.|+|++|.+++..+..|..++ |++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            356777777774 444333  6888999999888877777777777 888888888888777888888888888888888


Q ss_pred             cCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      .++...+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8885555567778888888888888887777778888888888888888887777777777788888888877654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=7.9e-19  Score=202.33  Aligned_cols=262  Identities=21%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCCC------CCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCc
Q 005361           34 NKLHAEEVKALKQIGRKLGKKDWNFG------VDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGT  107 (700)
Q Consensus        34 ~~~~~~e~~al~~l~~~~~~~~w~~~------~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~  107 (700)
                      +.+...+++++.++..+.+...|...      ..++   ..|           .+..+    ..++++.|+|..+.+...
T Consensus       127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~~~~~----s~~~~~~l~L~~n~~~~~  188 (727)
T 4b8c_D          127 KSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPS---GTA-----------TNSAV----STPLTPKIELFANGKDEA  188 (727)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred             hhccccchhhhhhhhhhcccccCcccCCCcCCCCcc---ccC-----------CCcee----cCCccceEEeeCCCCCcc
Confidence            44667788899999888755444322      1111   134           33443    246799999998887753


Q ss_pred             CchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCC
Q 005361          108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI  187 (700)
Q Consensus       108 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  187 (700)
                       +..     .|+.++|+.|.+.+             +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..++
T Consensus       189 -~~~-----~l~~l~Ls~~~i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~  247 (727)
T 4b8c_D          189 -NQA-----LLQHKKLSQYSIDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred             -hhh-----HhhcCccCcccccC-------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence             332     24444455444432             222333333 33444444444444444444444 3444444444


Q ss_pred             CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361          188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS  267 (700)
Q Consensus       188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  267 (700)
                      +|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            4444444444444 44444444444555555444444 33444444444555555444444 334444444444444444


Q ss_pred             CCCCCCCcccccCc--cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCC--------CCCCCChhhHhcCCCCCEEEc
Q 005361          268 DLKGSESAFPKLDK--MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN--------NLTGGIPTTFEKLAKTNFMYL  337 (700)
Q Consensus       268 ~n~~~~~~~~~l~~--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~L  337 (700)
                      +|.+.......+..  ..+..|+|++|.+++.+|.      .|+.|+++.|        .|.+..+..+..+..+....+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  398 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL  398 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------------------------------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence            43333221111111  1222356777777766664      3455566666        233333333444444555555


Q ss_pred             cCCcCC
Q 005361          338 TGNKLT  343 (700)
Q Consensus       338 ~~N~l~  343 (700)
                      +.|.+.
T Consensus       399 s~Nil~  404 (727)
T 4b8c_D          399 SYNTLC  404 (727)
T ss_dssp             ---CCC
T ss_pred             eccccc
Confidence            555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=1.2e-18  Score=197.61  Aligned_cols=173  Identities=16%  Similarity=0.102  Sum_probs=105.0

Q ss_pred             cEEEEEecCCC-CCC-cCchhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCCCCCC----CCchhcCC
Q 005361           93 HVVTIALKAQN-LTG-TLPTELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGNRLSG----PFPKVLTN  161 (700)
Q Consensus        93 ~v~~L~L~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n~l~~----~~p~~~~~  161 (700)
                      +++.|+|+++. ++. .++.....+++|++|+|++|.+++.    ++.....++ |++|++++|.+++    .++..+.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            48999998775 211 1223345788999999999987655    333445556 8899999888873    34444567


Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCC---CcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc
Q 005361          162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT---GELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ  238 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  238 (700)
                      +++|++|+|++|.+.+ ++..+..+++|+.|+++.....   ...+..+..+++|+.|+++++.. ..+|..+..+++|+
T Consensus       219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR  296 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred             CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence            8889999998888774 5666777777888877643222   12223344555555555555322 24445555555566


Q ss_pred             EEEccCCCCCCCch-hhhhcCCCCCEEEcC
Q 005361          239 KLHIQGSSLEGPIP-ASISALTSLTDLRIS  267 (700)
Q Consensus       239 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~  267 (700)
                      +|+|++|.+++... ..+..+++|+.|+++
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            66665555443222 223455555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=3.4e-17  Score=173.45  Aligned_cols=171  Identities=22%  Similarity=0.229  Sum_probs=133.5

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccc-ccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      +.++++++.++. +|..+.  +.++.|+|++|.+++..+..+. .++ |++|+|++|.+++..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            367888888875 454443  4688999999999988777776 676 99999999999877777888899999999999


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhh---cCCCcccEEEccCCCCCC
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI---GKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~  249 (700)
                      |++....+..|..+++|+.|+|++|.++...+..|..+++|++|+|++|.++...+..+   ..+++|+.|+|++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99887666778888999999999999887778888888999999999998886555555   567888888888888887


Q ss_pred             CchhhhhcCCCC--CEEEcCC
Q 005361          250 PIPASISALTSL--TDLRISD  268 (700)
Q Consensus       250 ~~~~~~~~l~~L--~~L~l~~  268 (700)
                      ..+..+..++.+  +.|++++
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCS
T ss_pred             cCHHHhhhccHhhcceEEecC
Confidence            666667666542  4444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.2e-16  Score=151.96  Aligned_cols=154  Identities=18%  Similarity=0.291  Sum_probs=92.8

Q ss_pred             CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361          160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK  239 (700)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  239 (700)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34556666666666666 344 4666666777777666554  2235666677777777777766555666666777777


Q ss_pred             EEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361          240 LHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       240 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      |++++|.+++..+..+..+++|+.|++++|..                      ++ .+| .+..+++|+.|+|++|+++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~----------------------i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGA----------------------IT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTB----------------------CC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCC----------------------cc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            77777777655566666666666655554320                      22 223 3555666667777777666


Q ss_pred             CCChhhHhcCCCCCEEEccCCcCC
Q 005361          320 GGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       320 ~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      + ++ .+..+++|+.|++++|++.
T Consensus       173 ~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          173 D-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             C-CT-TGGGCSSCCEEEECBC---
T ss_pred             C-hH-HhccCCCCCEEEeeCcccC
Confidence            4 22 5666677777777777664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=3.1e-16  Score=150.88  Aligned_cols=150  Identities=17%  Similarity=0.252  Sum_probs=79.6

Q ss_pred             cCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK  191 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  191 (700)
                      ..+++|+.|++++|.+.. ++ .+..++ |++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            334455555555555542 22 233333 555555555443  1224555666666666666665545555666666666


Q ss_pred             EEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361          192 LILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK  270 (700)
Q Consensus       192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  270 (700)
                      |++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            6666666655555556666666666666665 33 333 45556666666666666553 22 45555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.3e-16  Score=152.80  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             CCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       292 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      |+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            3333344444555666666666666666666666666666666666666555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=3.5e-16  Score=149.84  Aligned_cols=113  Identities=23%  Similarity=0.298  Sum_probs=71.6

Q ss_pred             ccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeee
Q 005361          284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDIS  360 (700)
Q Consensus       284 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls  360 (700)
                      |+.|+|++|.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|+ .+|...   +++++.|+|+
T Consensus        56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeC
Confidence            333344445555555556666777777777777777666666777777777777777776 344332   2356777888


Q ss_pred             cCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361          361 LNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH  413 (700)
Q Consensus       361 ~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~  413 (700)
                      +|++        .|+|...|+..|+......        .....|..|...++
T Consensus       135 ~N~~--------~C~c~l~~l~~~~~~~~~~--------~~~~~C~~P~~l~g  171 (193)
T 2wfh_A          135 ANPL--------YCDCNMQWLSDWVKSEYKE--------PGIARCAGPGEMAD  171 (193)
T ss_dssp             SSCE--------ECSGGGHHHHHHHHHSSCC--------CSCCBEEESGGGTT
T ss_pred             CCCe--------ecCCcCHHHHHHHHhccCC--------CCCcCcCCchHHCC
Confidence            8844        4999999999998643111        23456776665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=1.5e-16  Score=160.39  Aligned_cols=165  Identities=22%  Similarity=0.334  Sum_probs=84.7

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      +..++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|+.|+|++|.+++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            555666666665332  3555666666666666665 333 45566666666666666654332  55566666666666


Q ss_pred             CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361          221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD  300 (700)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~  300 (700)
                      |++++. +. +.. ++|+.|+|++|.+++. + .+..+++|+.                       |+|++|++++. + 
T Consensus        95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~-----------------------L~Ls~N~i~~~-~-  144 (263)
T 1xeu_A           95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEI-----------------------LSIRNNKLKSI-V-  144 (263)
T ss_dssp             SCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCE-----------------------EECTTSCCCBC-G-
T ss_pred             CccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccE-----------------------EECCCCcCCCC-h-
Confidence            665532 22 111 4555555555554431 1 2333333333                       33333444422 2 


Q ss_pred             hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|+++
T Consensus       145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            344555555555555555543  34455555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=8.9e-19  Score=195.76  Aligned_cols=108  Identities=16%  Similarity=0.289  Sum_probs=67.1

Q ss_pred             CCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEccc
Q 005361          212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTK  291 (700)
Q Consensus       212 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~  291 (700)
                      .|+.|+|++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|+                       +
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls-----------------------~  495 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS-----------------------D  495 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC-----------------------S
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC-----------------------C
Confidence            36666666666664 344 666666666666666666 455566666555555544                       4


Q ss_pred             CCCCCCCchhhcCCCCCCEEeccCCCCCCCC-hhhHhcCCCCCEEEccCCcCCCCCc
Q 005361          292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI-PTTFEKLAKTNFMYLTGNKLTGPVP  347 (700)
Q Consensus       292 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~ip  347 (700)
                      |.|++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++..|
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            55553 34 5666666777777777776655 6666667777777777777665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=4.2e-16  Score=157.16  Aligned_cols=170  Identities=18%  Similarity=0.250  Sum_probs=135.8

Q ss_pred             CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361          114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL  192 (700)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (700)
                      .+.+++.++++.+.+++..  .+..++ |++|++++|.++. ++ .+..+++|++|+|++|++++..+  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            4667778889999988654  466677 9999999999984 45 68899999999999999996544  9999999999


Q ss_pred             EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361          193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS  272 (700)
Q Consensus       193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  272 (700)
                      ++++|.+++ ++. +.. ++|++|++++|.+++. + .+..+++|+.|+|++|.+++. + .+..+++|+.|++++    
T Consensus        91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~----  159 (263)
T 1xeu_A           91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHG----  159 (263)
T ss_dssp             ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTT----
T ss_pred             ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCC----
Confidence            999999985 443 333 8999999999999854 3 589999999999999999864 3 577777666666655    


Q ss_pred             CCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCC
Q 005361          273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGG  321 (700)
Q Consensus       273 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  321 (700)
                                         |.+++.  ..+..+++|+.|+|++|.+++.
T Consensus       160 -------------------N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          160 -------------------NEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -------------------SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -------------------CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                               555543  4566778888888888888754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.61  E-value=1.3e-16  Score=180.86  Aligned_cols=102  Identities=18%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             CcEEEEEecCC-CCCCc-CchhhcCCCCCCEEECcCCCCCCCcccccc----ccc-ccEEEccCCC--CCC-CCchhcCC
Q 005361           92 CHVVTIALKAQ-NLTGT-LPTELSKLRYLKQLDLSRNCLTGSFSPQWA----SLQ-LVELSVMGNR--LSG-PFPKVLTN  161 (700)
Q Consensus        92 ~~v~~L~L~~~-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l~-L~~L~L~~n~--l~~-~~p~~~~~  161 (700)
                      .+++.|+|+++ .++.. ++..+.++++|++|+|++|.+++..+..+.    .++ |++|++++|.  +.. .++..+.+
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            47899999888 44432 444455789999999999887765444333    344 8888888886  221 11222344


Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361          162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI  193 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (700)
                      +++|++|+|++|...+.++..+..+++|+.|+
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence            68888888887721112333344444444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=1.4e-16  Score=180.62  Aligned_cols=127  Identities=20%  Similarity=0.172  Sum_probs=86.5

Q ss_pred             CcEEEEEecCCCCCCcCchhhc-CCCCCCEEECcCC-CCCCC-ccccccccc-ccEEEccCCCCCCCCchhc----CCCC
Q 005361           92 CHVVTIALKAQNLTGTLPTELS-KLRYLKQLDLSRN-CLTGS-FSPQWASLQ-LVELSVMGNRLSGPFPKVL----TNIT  163 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-L~~L~L~~n~l~~~~p~~~----~~l~  163 (700)
                      .+++.|+|+++.+++..+..+. .+++|++|+|++| .+... ++..+..++ |++|+|++|.+++..+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            4689999999988876666665 6899999999988 44432 344444566 9999999998776554444    3677


Q ss_pred             CCCEEEccCCcCCCCCCcc----ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361          164 TLKNLSIEGNLFTGSIPPD----IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS  219 (700)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  219 (700)
                      +|++|+|++|. .......    +..+++|+.|++++|.....++..+..+++|++|++.
T Consensus       185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            99999999887 2111222    2456999999999883222244555555556555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=1.5e-17  Score=185.73  Aligned_cols=188  Identities=12%  Similarity=0.114  Sum_probs=123.1

Q ss_pred             CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC-------------CCCcCchhhhCCCCCcEEE-eecCcCCC
Q 005361          160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS-------------FTGELPAELTKLTNLNDLR-ISDNNFSG  225 (700)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~  225 (700)
                      ..+++|+.|+|++|.+. .+|..++++++|+.|++++|.             +.+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34555666666666655 455556666666666654443             2233334444444444444 2322211 


Q ss_pred             CChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcC
Q 005361          226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGD  304 (700)
Q Consensus       226 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~  304 (700)
                                .|+.+.+.+|.+.. ++     ...|+.|++++|.+...  |.+.. ++|+.|+|++|.|+ .+|..+..
T Consensus       424 ----------~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~l--p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ----------HHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ----------hhhhhhhhcccccc-cC-----ccCceEEEecCCCCCCC--cCccccccCcEeecCccccc-ccchhhhc
Confidence                      11112222222221 11     12467777777666553  33555 78888888889998 77889999


Q ss_pred             CCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCC-chhhh--cCCCeeeeecCcccccCCC
Q 005361          305 MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPV-PKYIF--NSNKNVDISLNNFTWESSD  370 (700)
Q Consensus       305 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i-p~~~~--~~l~~L~ls~N~l~~~~p~  370 (700)
                      +++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+.  ++|+.|+|++|++++..|.
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9999999999999996 67 8999999999999999999776 77764  5899999999999987664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=4.9e-15  Score=141.75  Aligned_cols=129  Identities=22%  Similarity=0.327  Sum_probs=80.1

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccc-cccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-QWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      +.++++++.++ .+|..+.  ++|++|+|++|.+.+..+. .+..++ |++|+|++|.+++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56778888775 4454443  2777777777777765543 355555 66666666666666666666666666666666


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCC
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK  226 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  226 (700)
                      |++++..+..|.++++|++|+|++|.+++..|..+..+++|++|+|++|++++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            666655555566666666666666666655555555555566665555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=5.1e-16  Score=178.87  Aligned_cols=188  Identities=21%  Similarity=0.239  Sum_probs=110.4

Q ss_pred             cCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361          107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK  185 (700)
Q Consensus       107 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  185 (700)
                      ..+..+..++.|+.|+|++|.+..+ |..+..++ |++|+|++|.++ .+|..|.+|++|++|+|++|.++ .+|..|+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            4467788888999999999888844 44444565 888888888888 77888888888888888888888 67888888


Q ss_pred             CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCC-cccEEEccCCCCCCCchhhhhcCCCCCEE
Q 005361          186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWK-KIQKLHIQGSSLEGPIPASISALTSLTDL  264 (700)
Q Consensus       186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  264 (700)
                      |++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+. .+..|+|++|.+++.+|..      |+.|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l  364 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI  364 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence            888888888888887 6677788888888888888888888887775543 2234678888888776643      4445


Q ss_pred             EcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361          265 RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       265 ~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      +++.|...               ......+.+..+..+..+.++....+++|.+.
T Consensus       365 ~l~~n~~~---------------~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          365 EINTDGEP---------------QREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ----------------------------------------------------CCC
T ss_pred             Eeeccccc---------------ccccCCccccccchhhcccccceeeeeccccc
Confidence            55442100               01112344444445556667777788888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=6e-15  Score=137.91  Aligned_cols=131  Identities=21%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             CCCCEEECcCCCCC-CCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361          116 RYLKQLDLSRNCLT-GSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI  193 (700)
Q Consensus       116 ~~L~~L~L~~n~l~-~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (700)
                      ++|+.|+|++|.++ +.+|..+..++ |++|++++|.+++.  ..+..+++|++|+|++|.+.+.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666665 44455555555 66666666655543  4455566666666666666554555555566666666


Q ss_pred             eeecCCCCcC-chhhhCCCCCcEEEeecCcCCCCCh---hhhcCCCcccEEEccCCCCC
Q 005361          194 LSSNSFTGEL-PAELTKLTNLNDLRISDNNFSGKIP---EFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       194 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~  248 (700)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666655321 1455555666666666665554333   34555555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=135.86  Aligned_cols=130  Identities=24%  Similarity=0.242  Sum_probs=103.7

Q ss_pred             ccEEEccCCCCC-CCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361          141 LVELSVMGNRLS-GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS  219 (700)
Q Consensus       141 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  219 (700)
                      |++|++++|.++ +.+|..+..+++|++|+|++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            888888888887 67777778888888888888888854  678888888888888888887678777778888888888


Q ss_pred             cCcCCCCC-hhhhcCCCcccEEEccCCCCCCCch---hhhhcCCCCCEEEcCCCCCC
Q 005361          220 DNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPIP---ASISALTSLTDLRISDLKGS  272 (700)
Q Consensus       220 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~  272 (700)
                      +|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|...
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            88887542 2678888888888888888886544   46777888888877765543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=1.5e-15  Score=158.71  Aligned_cols=250  Identities=15%  Similarity=0.119  Sum_probs=149.9

Q ss_pred             CcEEEEEecCCCCCCcCchhhcC-CCCCCEEECcCCCCC--CCcccccccccccEEEccCCCCCCCCchhcCC-------
Q 005361           92 CHVVTIALKAQNLTGTLPTELSK-LRYLKQLDLSRNCLT--GSFSPQWASLQLVELSVMGNRLSGPFPKVLTN-------  161 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~-------  161 (700)
                      .++++|.++++ +....-..+.. +++|+.|+|++|.+.  ......+..  ++.+.+..|.+   .+..|.+       
T Consensus        25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~~I---~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMANFV---PAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred             CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccc--ccccccccccc---CHHHhccccccccc
Confidence            46788888754 22111223444 788999999999987  222212211  34444444432   2344555       


Q ss_pred             -CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc----CCCCChhhhcC---
Q 005361          162 -ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN----FSGKIPEFIGK---  233 (700)
Q Consensus       162 -l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~---  233 (700)
                       +++|+.|+|.+ .++...+.+|.++++|+.|++++|.+..+.+..|.++.++..+.+..+.    ........|..   
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence             88888888887 6765556678888888888888888776666677776666666544311    11111111211   


Q ss_pred             -----------------------CCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEc
Q 005361          234 -----------------------WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLIL  289 (700)
Q Consensus       234 -----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L  289 (700)
                                             ..+++.+.+.++-...........+++|+.|++.+|.+...+...+.. .+|+.|+|
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence                                   233344444433111111111123677777777776666555555655 67777777


Q ss_pred             ccCCCCCCCchhhcCCCCCC-EEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361          290 TKCLIHGEIPDYIGDMTKLK-NIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF  351 (700)
Q Consensus       290 ~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~  351 (700)
                      .+| ++.+.+..|.++++|+ .|+|.+ +++.+.+.+|.++++|+.|++++|+++ .++...|
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF  317 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELF  317 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTT
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhh
Confidence            776 6656666777888887 888877 666566677888888888888888777 5555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=9.8e-15  Score=133.47  Aligned_cols=125  Identities=25%  Similarity=0.252  Sum_probs=90.7

Q ss_pred             ccEEEccCCCCC-CCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361          141 LVELSVMGNRLS-GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS  219 (700)
Q Consensus       141 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  219 (700)
                      |+.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            666666666665 55666667777777777777777754  567777778888888887776677777777888888888


Q ss_pred             cCcCCCC-ChhhhcCCCcccEEEccCCCCCCCch---hhhhcCCCCCEEEcC
Q 005361          220 DNNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIP---ASISALTSLTDLRIS  267 (700)
Q Consensus       220 ~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~  267 (700)
                      +|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8887753 23667778888888888888776554   467778888887765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=7.2e-15  Score=134.39  Aligned_cols=126  Identities=22%  Similarity=0.213  Sum_probs=78.5

Q ss_pred             CCCCEEECcCCCCC-CCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361          116 RYLKQLDLSRNCLT-GSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI  193 (700)
Q Consensus       116 ~~L~~L~L~~n~l~-~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (700)
                      ++|+.|++++|.++ +.+|..+..++ |++|++++|.+++.  ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45555555555555 44444444444 55555555555544  4566666777777777777655666666667777777


Q ss_pred             eeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCCh---hhhcCCCcccEEEcc
Q 005361          194 LSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIP---EFIGKWKKIQKLHIQ  243 (700)
Q Consensus       194 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~  243 (700)
                      +++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777776642 23566777777777777777765544   456677777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=8.9e-14  Score=131.08  Aligned_cols=131  Identities=22%  Similarity=0.264  Sum_probs=76.9

Q ss_pred             EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      .+.++++++.++.. |..+  .++|++|++++|.+++..+..+..++ |++|++++|.+++..+..|..+++|++|+|++
T Consensus         9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35677777777643 3322  35777777777777765555555555 66666666666655555556666666666666


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCC
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI  227 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  227 (700)
                      |.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|++.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            6666444444555566666666666655444444455555555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=7.9e-14  Score=133.35  Aligned_cols=128  Identities=21%  Similarity=0.223  Sum_probs=85.6

Q ss_pred             CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361          119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS  198 (700)
Q Consensus       119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (700)
                      +.+++++|.++.. |..+. ..|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus        13 ~~l~~~~~~l~~i-p~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSC-CSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcC-CCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4677777777743 32221 12777777777776 555667777777777777777776666667777777777777777


Q ss_pred             CCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       199 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +++..+..|..+++|++|+|++|.++...+..+..+++|+.|+|++|.+..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            776666667777777777777777765555556666677777777666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=8.9e-14  Score=131.09  Aligned_cols=134  Identities=19%  Similarity=0.211  Sum_probs=112.6

Q ss_pred             CCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeee
Q 005361          117 YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSS  196 (700)
Q Consensus       117 ~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (700)
                      ..+.++++++.++.......  ..|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35788999998885543221  2399999999999977777788999999999999999977667788999999999999


Q ss_pred             cCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361          197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP  252 (700)
Q Consensus       197 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  252 (700)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99997777778899999999999999997777777889999999999999987655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=5.4e-13  Score=142.43  Aligned_cols=222  Identities=11%  Similarity=0.075  Sum_probs=103.7

Q ss_pred             hhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361          111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ  190 (700)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (700)
                      +|.+. +|+.+.|..+ ++.+...+|....|+.+.+.. .++.+.+..|.++++|+.++|..|.++......|. ..+|+
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~  206 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE  206 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccC
Confidence            44443 4555555443 444444445443455555553 44434444555555555555555555533333333 35555


Q ss_pred             EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361          191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK  270 (700)
Q Consensus       191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  270 (700)
                      .+.|..+ ++.+-..+|.++++|+.+++..| ++..-...|.. .+|+.+.|. +.++......|.++++|+.+.+.++.
T Consensus       207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             EEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc
Confidence            5555532 44344445555555555555543 33233334444 455555553 23333334455555555555555433


Q ss_pred             CC-----CCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          271 GS-----ESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       271 ~~-----~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      ..     ......+.. .+|+.+.|. +.++.+....|.++++|+.|+|..| ++.....+|.++ +|+.+++.+|.+.
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            22     111111222 445555554 2244333444555555555555333 333334445555 5555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=1.6e-13  Score=143.16  Aligned_cols=236  Identities=11%  Similarity=0.020  Sum_probs=142.5

Q ss_pred             CcEEEEEecCCCCC--CcCchhhcCCCCCCEEECcCCCCCCCccccccc--------cc-ccEEEccCCCCCCCCchhcC
Q 005361           92 CHVVTIALKAQNLT--GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS--------LQ-LVELSVMGNRLSGPFPKVLT  160 (700)
Q Consensus        92 ~~v~~L~L~~~~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~-L~~L~L~~n~l~~~~p~~~~  160 (700)
                      .+++.|+|++|++.  .....   .++.++.+.+..|.+   .+.+|..        +. |+.|+|.+ .++.+.+..|.
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             ccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            46889999988877  11111   111223333333321   2233333        44 55555555 55444444555


Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC----CCCcCchhhhC--------------------------C
Q 005361          161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS----FTGELPAELTK--------------------------L  210 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~--------------------------l  210 (700)
                      ++++|++|+|++|.+....+..|.++.++..+.+..+.    ........|.+                          .
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP  201 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence            55555555555555554444455554444444433210    01111111222                          3


Q ss_pred             CCCcEEEeecCcCCCCChhhh-cCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCcc-EE
Q 005361          211 TNLNDLRISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLK-TL  287 (700)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~-~L  287 (700)
                      .++..+.+.++-.. .....+ ..+++|+.|+|++|.++...+..|.++.+|+.|++.+| +.......+.. .+|+ .|
T Consensus       202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence            44455555443211 111112 23778899999988888666677888999999998885 55544444666 7788 99


Q ss_pred             EcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEc
Q 005361          288 ILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYL  337 (700)
Q Consensus       288 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  337 (700)
                      ++.+ .++.+.+..|.++++|+.|+|+.|+++...+.+|.++++|+.++.
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9988 777677789999999999999999999888889999999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=1.2e-13  Score=130.09  Aligned_cols=131  Identities=24%  Similarity=0.203  Sum_probs=74.2

Q ss_pred             hcCCCCCCEEECcCCCCCCCcccccccc-cccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361          112 LSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ  190 (700)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (700)
                      +.++++|+.|++++|.++.. +...... .|++|++++|.+++.  ..+..+++|++|+|++|.+++..+..|..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            45566677777777766643 3333333 266666666666543  4456666666666666666643333345666666


Q ss_pred             EEEeeecCCCCcCch--hhhCCCCCcEEEeecCcCCCCChh----hhcCCCcccEEEccCCCC
Q 005361          191 KLILSSNSFTGELPA--ELTKLTNLNDLRISDNNFSGKIPE----FIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       191 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l  247 (700)
                      +|++++|.+. .+|.  .+..+++|+.|++++|+++ .+|.    .+..+++|+.|+++.|..
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666666664 3343  5556666666666666665 2333    255555555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=1.2e-12  Score=139.87  Aligned_cols=241  Identities=7%  Similarity=0.072  Sum_probs=188.1

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      ++++.+.|..+ ++.....+|.+. +|+.+.|.. .+..+...+|..+. |+.+++.+|.++.+....|. ..+|+.+.|
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            45777777655 666666778774 799999985 67767778888887 99999999999866666666 589999999


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC--
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE--  248 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--  248 (700)
                      ..+ +......+|.++++|+.+++..+ ++.+-..+|.+ .+|+.+.|. +.++......|..+++|+.+++.+|.+.  
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            855 66566778999999999999875 55555667877 789999994 4566566778999999999999887765  


Q ss_pred             ---CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChh
Q 005361          249 ---GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT  324 (700)
Q Consensus       249 ---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  324 (700)
                         ...+..|.++++|+.+.+.+ ++.......+.. .+|+.|.|..+ ++.+....|.++ +|+.|++++|.+....+.
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               34567799999999999985 455555555666 89999999655 776777889999 999999999998877777


Q ss_pred             hHhcCC-CCCEEEccCCcCC
Q 005361          325 TFEKLA-KTNFMYLTGNKLT  343 (700)
Q Consensus       325 ~~~~l~-~L~~L~L~~N~l~  343 (700)
                      .|.+++ .+..|++..+.+.
T Consensus       364 ~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          364 VWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCCCSCTTCCEEEECGGGHH
T ss_pred             cccCCCCCccEEEeCHHHHH
Confidence            777774 6778877776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=3.8e-13  Score=125.77  Aligned_cols=100  Identities=22%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             ccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeec
Q 005361          284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISL  361 (700)
Q Consensus       284 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~  361 (700)
                      |+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+  +.+++.|+|++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            4444555555555555556666666666666666665555555666666666666666663333222  23556666666


Q ss_pred             CcccccCCCCCCCCCC-CccceecccCCCCC
Q 005361          362 NNFTWESSDPIECPRG-SVNLVESYSSPRNK  391 (700)
Q Consensus       362 N~l~~~~p~~~~C~~~-~~~~~~~~~~~~~~  391 (700)
                      |++        .|+|. ..++..|+......
T Consensus       112 N~~--------~c~c~~l~~l~~~l~~~~~~  134 (170)
T 3g39_A          112 NPW--------DCACSDILYLSRWISQHPGL  134 (170)
T ss_dssp             SCB--------CTTBGGGHHHHHHHHHCGGG
T ss_pred             CCC--------CCCchhHHHHHHHHHhCcce
Confidence            633        38885 56666777655433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=4e-15  Score=143.20  Aligned_cols=148  Identities=22%  Similarity=0.295  Sum_probs=83.3

Q ss_pred             cCCCCCCEEECcCCCCCCCccc------cccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSP------QWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK  185 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  185 (700)
                      .....++.++++.+.+.+..|.      .+..++ |++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344455555555555444443      444444 5555555555553 34 5555666666666666665 45555555


Q ss_pred             CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCCh-hhhcCCCcccEEEccCCCCCCCchh----------h
Q 005361          186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP-EFIGKWKKIQKLHIQGSSLEGPIPA----------S  254 (700)
Q Consensus       186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~  254 (700)
                      +++|+.|++++|.+++ +| .+..+++|++|++++|.++...+ ..+..+++|+.|++++|.+.+..|.          .
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            5666666666666663 33 45566666666666666653222 3566666666666666666544332          2


Q ss_pred             hhcCCCCCEEE
Q 005361          255 ISALTSLTDLR  265 (700)
Q Consensus       255 ~~~l~~L~~L~  265 (700)
                      +..+++|+.|+
T Consensus       170 ~~~l~~L~~Ld  180 (198)
T 1ds9_A          170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCSEEC
T ss_pred             HHhCCCcEEEC
Confidence            55666666664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=6.1e-13  Score=125.20  Aligned_cols=125  Identities=14%  Similarity=0.197  Sum_probs=94.2

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      |++|++++|.++. +|......++|++|+|++|.+++.  ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        21 L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           21 DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             CEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             ceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            8888888888884 454333344888888888888854  5778888888888888888865555568888888888888


Q ss_pred             CcCCCCChh--hhcCCCcccEEEccCCCCCCCchh----hhhcCCCCCEEEcCCCC
Q 005361          221 NNFSGKIPE--FIGKWKKIQKLHIQGSSLEGPIPA----SISALTSLTDLRISDLK  270 (700)
Q Consensus       221 n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~  270 (700)
                      |.++ .+|.  .+..+++|+.|++++|.+.. +|.    .+..+++|+.|++++|.
T Consensus        98 N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           98 NSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred             CcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence            8886 4554  67788888888888888873 444    37777888887777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=6e-15  Score=141.95  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=102.8

Q ss_pred             cCCCCCCCEEEccCCcCCCCCCc------cccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhc
Q 005361          159 LTNITTLKNLSIEGNLFTGSIPP------DIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG  232 (700)
Q Consensus       159 ~~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  232 (700)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34456677777777777766665      77778888888888887775 55 6777788888888888777 5566666


Q ss_pred             CCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCc-hhhcCCCCCCEE
Q 005361          233 KWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIP-DYIGDMTKLKNI  311 (700)
Q Consensus       233 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L  311 (700)
                      .+++|+.|++++|.+++ +| .+..+++|+.|                       +|++|.+++..+ ..+..+++|+.|
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L-----------------------~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVL-----------------------YMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE-----------------------EESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEE-----------------------ECCCCcCCchhHHHHHhcCCCCCEE
Confidence            66777777777777764 33 35444444444                       444555553222 356677777777


Q ss_pred             eccCCCCCCCChh----------hHhcCCCCCEEEccCCcCC
Q 005361          312 DLSFNNLTGGIPT----------TFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       312 ~Ls~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~  343 (700)
                      ++++|.+++.+|.          .+..+++|+.||  +|.++
T Consensus       146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777777655443          266777777765  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=4.1e-12  Score=118.72  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=52.6

Q ss_pred             CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361          119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS  198 (700)
Q Consensus       119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (700)
                      +.+++++|.++.. |..+. ..|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.
T Consensus        12 ~~l~~s~n~l~~i-p~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASV-PTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSC-CSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcc-CccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4566666666543 22211 115555555555555555555555555555555555554444444555555555555555


Q ss_pred             CCCcCchhhhCCCCCcEEEeecCcCC
Q 005361          199 FTGELPAELTKLTNLNDLRISDNNFS  224 (700)
Q Consensus       199 l~~~~~~~~~~l~~L~~L~L~~n~l~  224 (700)
                      +++..+..|..+++|++|+|++|+++
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55443444555555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=8.5e-12  Score=116.96  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=59.0

Q ss_pred             CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361          119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS  198 (700)
Q Consensus       119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (700)
                      +.+++++|.+... |..+. ..|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.
T Consensus        15 ~~l~~~~n~l~~i-P~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSC-CSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCcc-CCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            4667777766533 32221 226666666666665556666666666666666666664444445556666666666666


Q ss_pred             CCCcCchhhhCCCCCcEEEeecCcCC
Q 005361          199 FTGELPAELTKLTNLNDLRISDNNFS  224 (700)
Q Consensus       199 l~~~~~~~~~~l~~L~~L~L~~n~l~  224 (700)
                      +++..+..|..+++|++|+|++|++.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            65444444555555666555555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=5.3e-12  Score=132.63  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             cCccEEEccc-CCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc--CCCeee
Q 005361          282 MNLKTLILTK-CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN--SNKNVD  358 (700)
Q Consensus       282 ~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~  358 (700)
                      .+|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|+ .+|...+.  .|+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCceEEE
Confidence            4566667775 8888788888999999999999999999988999999999999999999999 56655544  488999


Q ss_pred             eecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCC
Q 005361          359 ISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPA  409 (700)
Q Consensus       359 ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~  409 (700)
                      |.+|+        |.|+|...|+..|+......+.      ...+.|..|.
T Consensus       110 l~~N~--------~~c~c~l~~~~~~~~~~~~~l~------~~~~~C~~~~  146 (347)
T 2ifg_A          110 LSGNP--------LHCSCALRWLQRWEEEGLGGVP------EQKLQCHGQG  146 (347)
T ss_dssp             CCSSC--------CCCCGGGHHHHHHHHTTCSSCG------GGCCCCSSSS
T ss_pred             eeCCC--------ccCCCccHHHHHHHHhCccccc------ccCCCCCCCh
Confidence            99994        4599999999999876544332      3567777766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=2.2e-11  Score=114.15  Aligned_cols=104  Identities=19%  Similarity=0.238  Sum_probs=80.7

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN  173 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  173 (700)
                      +.++++++.++ .+|..+.  ++|++|+|++|.+++..|..|..++ |++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56778888775 4454443  7888888888888888788888777 888888888888766666778888888888888


Q ss_pred             cCCCCCCccccCCCCccEEEeeecCCCC
Q 005361          174 LFTGSIPPDIRKLINLQKLILSSNSFTG  201 (700)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~  201 (700)
                      ++++..+..|..+++|+.|+|++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            8886555568888888888888888773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=2e-12  Score=136.66  Aligned_cols=12  Identities=33%  Similarity=0.642  Sum_probs=6.4

Q ss_pred             ccEEEccCCCCC
Q 005361          141 LVELSVMGNRLS  152 (700)
Q Consensus       141 L~~L~L~~n~l~  152 (700)
                      |+.|+|++|.++
T Consensus        74 L~~L~Ls~n~l~   85 (372)
T 3un9_A           74 LRQLNLAGVRMT   85 (372)
T ss_dssp             CCEEECTTSCCC
T ss_pred             CCEEEecCCCCC
Confidence            555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.11  E-value=6.2e-12  Score=132.88  Aligned_cols=160  Identities=14%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             CCCCCEEEccCCcCCCCCCccccC-----CCCccEEEeeecCCCCcCchhh-hCCCCCcEEEeecCcCCCCChhhh----
Q 005361          162 ITTLKNLSIEGNLFTGSIPPDIRK-----LINLQKLILSSNSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPEFI----  231 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l----  231 (700)
                      ++.|++|+|++|.++......+..     .++|+.|+|++|.++......+ ..+++|+.|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356788888888776332222222     2577777777777653322222 234566777777776653322222    


Q ss_pred             -cCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCC----Cchhh
Q 005361          232 -GKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE----IPDYI  302 (700)
Q Consensus       232 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~----~p~~~  302 (700)
                       ...++|+.|+|++|.++..    ++..+...++|+.|+|++                       |.|+..    +...+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-----------------------N~l~~~g~~~L~~~L  207 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-----------------------TGLGDEGLELLAAQL  207 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-----------------------SSCHHHHHHHHHHHG
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-----------------------CCCCcHHHHHHHHHH
Confidence             2345666666666665431    222334444455554444                       444321    23344


Q ss_pred             cCCCCCCEEeccCCCCCCC----ChhhHhcCCCCCEEEccCCcCCC
Q 005361          303 GDMTKLKNIDLSFNNLTGG----IPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       303 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                      ...++|+.|+|++|.|+..    +...+...++|+.|+|++|.|+.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            5556677777777766532    22344455667777777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=2e-10  Score=120.61  Aligned_cols=103  Identities=20%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             EEccCC-CCCCCCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC
Q 005361          144 LSVMGN-RLSGPFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN  221 (700)
Q Consensus       144 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  221 (700)
                      ++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.+|++|+.|+|++|.|++..|..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            355554 555 3455 66666666666664 6666555566666666777777766666666666666777777777777


Q ss_pred             cCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          222 NFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       222 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +|++..+..+..++ |+.|+|.+|.+..
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            76655555555444 6677777666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.91  E-value=6.4e-09  Score=111.04  Aligned_cols=259  Identities=12%  Similarity=0.075  Sum_probs=132.7

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCC---------------------C
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGN---------------------R  150 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n---------------------~  150 (700)
                      +++.+.|.. .++..-..+|.++++|+.++|.++ ++.+-..+|.... |+.+.+..+                     .
T Consensus        72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~  149 (394)
T 4fs7_A           72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEG  149 (394)
T ss_dssp             TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTT
T ss_pred             CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCcc
Confidence            688888864 466566677888888888888654 4433344444443 444433321                     1


Q ss_pred             CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhh
Q 005361          151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEF  230 (700)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  230 (700)
                      +.......|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++.+....|.++..|+.+.+..+...  +.+.
T Consensus       150 ~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~  225 (394)
T 4fs7_A          150 VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDF  225 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTT
T ss_pred             ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehh
Confidence            111223346666777777776543 2233455666677777766554 33333445556666665555443221  1122


Q ss_pred             hcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCC------------------ccc--ccCc-cCccEEEc
Q 005361          231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES------------------AFP--KLDK-MNLKTLIL  289 (700)
Q Consensus       231 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~------------------~~~--~l~~-~~L~~L~L  289 (700)
                      .....+|+.+.+..+ +.......|..+..|+.+.+..+.....                  .++  .+.. .+|+.+.+
T Consensus       226 ~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          226 ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEE
T ss_pred             hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccccccc
Confidence            222334445444322 1112223344555555555543211000                  011  1222 56666666


Q ss_pred             ccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecC
Q 005361          290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLN  362 (700)
Q Consensus       290 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N  362 (700)
                      ..+ ++.+....|.++.+|+.++|..+ ++.....+|.++.+|+.+++..| ++ .++...|   .+|+.+++..+
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            543 44344456666677777777543 55444556667777777776655 44 4444333   24666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.7e-09  Score=113.34  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=56.6

Q ss_pred             cCccEEEcccCCCCCCCchhhc---CCCCCCEEeccCCCCCCC----ChhhHhcCCCCCEEEccCCcCCCCCchhhhcCC
Q 005361          282 MNLKTLILTKCLIHGEIPDYIG---DMTKLKNIDLSFNNLTGG----IPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSN  354 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l  354 (700)
                      ++|+.|+|.+|.+....+..+.   .+++|++|+|+.|.|.+.    ++..+..+++|+.|+|++|.++...-..+...+
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            6888888888887643333332   478899999999998853    233445678999999999988744333333323


Q ss_pred             -CeeeeecCc
Q 005361          355 -KNVDISLNN  363 (700)
Q Consensus       355 -~~L~ls~N~  363 (700)
                       ..+++++|+
T Consensus       332 g~~~~~~~~~  341 (362)
T 2ra8_A          332 PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBC
T ss_pred             CCEEEecCCc
Confidence             567777774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.77  E-value=3.8e-08  Score=105.03  Aligned_cols=260  Identities=12%  Similarity=0.136  Sum_probs=149.3

Q ss_pred             EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCC---CCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC---LTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      ++.+.+..+ ++..-..+|.++++|+.+.+..|.   ++.+-..+|.... |+.+.+..+ ++.+....|.++.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            666666543 555556678888888888887653   4434445555544 666655543 3334445566777777777


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCC----
Q 005361          170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS----  245 (700)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n----  245 (700)
                      +..+. .......|.++.+|+.+.+..+ ++.+-..+|.. .+|+.+.+..+-.. .-...+..+.++.......+    
T Consensus       144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             cccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence            76432 2234455666677777766543 33233333432 44555555432211 11222333333333322111    


Q ss_pred             --------------------------------CCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccC
Q 005361          246 --------------------------------SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKC  292 (700)
Q Consensus       246 --------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n  292 (700)
                                                      .+...-..+|.++.+|+.+.+.+. .....-..+.. .+|+.+.+. +
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~  297 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-S  297 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-T
T ss_pred             ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-C
Confidence                                            111122345777788888887653 22222223444 678888885 4


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcc
Q 005361          293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNF  364 (700)
Q Consensus       293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l  364 (700)
                      .++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++ .|....|   .+|+.+++.+|..
T Consensus       298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred             cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence            455455667888888888888765 55555678888888888888654 55 5655544   3678888887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=4e-09  Score=110.44  Aligned_cols=208  Identities=17%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             cCcEEEEEecCCCCCC-cC-------chhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCC
Q 005361           91 TCHVVTIALKAQNLTG-TL-------PTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI  162 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~-~~-------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l  162 (700)
                      ..+|+.|.+......+ ..       ..++..+++|+.|.+..+.....             .++... .+.+...+..+
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~-------------~is~~~-~~~L~~ll~~~  171 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ-------------EISWIE-QVDLSPVLDAM  171 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC-------------CGGGCB-CCBCHHHHHTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc-------------cccccc-ccCHHHHHhcC
Confidence            4568888888665542 21       23345678888888865432210             000000 01233344455


Q ss_pred             CCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhh--CCCCCcEEEeec--CcCCCC-----Chhhh--
Q 005361          163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT--KLTNLNDLRISD--NNFSGK-----IPEFI--  231 (700)
Q Consensus       163 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~~~~l--  231 (700)
                      |+|+.|+|++|.-. .++. + .+++|+.|+|..+.+.......+.  .+++|+.|+|+.  |...+.     +...+  
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            66666666555211 1222 2 255666666666555432222332  466666666642  111111     01112  


Q ss_pred             cCCCcccEEEccCCCCCCCchhhhh---cCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCCCCchhhc
Q 005361          232 GKWKKIQKLHIQGSSLEGPIPASIS---ALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHGEIPDYIG  303 (700)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~p~~~~  303 (700)
                      ..+++|+.|+|.+|.+....+..+.   .+++|+.|+|+.|.+.......    +.. ++|+.|+|++|.++...-..+.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            2356666666666665532222232   3556677777665544422111    122 5677777777776643333333


Q ss_pred             C-CCCCCEEeccCCC
Q 005361          304 D-MTKLKNIDLSFNN  317 (700)
Q Consensus       304 ~-l~~L~~L~Ls~N~  317 (700)
                      . +  ...++++.++
T Consensus       329 ~al--g~~~~~~~~~  341 (362)
T 2ra8_A          329 KSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHC--CSEEECCSBC
T ss_pred             HHc--CCEEEecCCc
Confidence            2 2  3567888776

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.62  E-value=1.6e-07  Score=100.03  Aligned_cols=220  Identities=13%  Similarity=0.129  Sum_probs=146.8

Q ss_pred             chhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCC
Q 005361          109 PTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI  187 (700)
Q Consensus       109 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  187 (700)
                      ..+|.++++|+.+.+.++ +..+....|.... |+.+.+..+ ++.+....|.++..|+.+.+..+...  +...+....
T Consensus       155 ~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~  230 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT  230 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred             hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence            345667777777777544 2334445555555 777776654 44344555667777777766655332  223334456


Q ss_pred             CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361          188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS  267 (700)
Q Consensus       188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  267 (700)
                      +|+.+.+..+ ++......|..+.+|+.+.+..+... .....+..+..++.+.+..+.+.   ...|..+.+|+.+.+.
T Consensus       231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred             CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence            7777777543 33344556777888888888766443 44556777778888777665432   3457788899999887


Q ss_pred             CCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC
Q 005361          268 DLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN  340 (700)
Q Consensus       268 ~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  340 (700)
                      + ++....-..+.. .+|+.++|..+ ++.+-..+|.++.+|+.++|..| ++.....+|.++++|+.+++..+
T Consensus       306 ~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          306 D-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             T-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             c-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            6 344333344555 78999999754 66566778999999999999877 77667789999999999999765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.59  E-value=4.7e-07  Score=96.47  Aligned_cols=245  Identities=11%  Similarity=0.125  Sum_probs=170.9

Q ss_pred             CchhhcCCC-CCCEEECcCCCCCCCccccccccc-ccEEEccCCC---CCCCCchhcCCCCCCCEEEccCCcCCCCCCcc
Q 005361          108 LPTELSKLR-YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNR---LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD  182 (700)
Q Consensus       108 ~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  182 (700)
                      -..+|.+++ .|+.+.|.. .++.+-..+|.... |+.+.+..|.   ++.+-...|.++.+|+.+.+..+ ++......
T Consensus        55 g~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             CHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            345677774 599999975 36666678888877 9999998764   55555677888999999888765 44355667


Q ss_pred             ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCC
Q 005361          183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT  262 (700)
Q Consensus       183 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  262 (700)
                      |..+.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++..-...|. ..+|+.+.+..+... .....|..+.+|+
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~  208 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS  208 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence            889999999999754 44355678889999999999765 3323334454 367999988765332 3445566777776


Q ss_pred             EEEcCCCCCC---------------------------CCccc---------ccCc-cCccEEEcccCCCCCCCchhhcCC
Q 005361          263 DLRISDLKGS---------------------------ESAFP---------KLDK-MNLKTLILTKCLIHGEIPDYIGDM  305 (700)
Q Consensus       263 ~L~l~~n~~~---------------------------~~~~~---------~l~~-~~L~~L~L~~n~l~~~~p~~~~~l  305 (700)
                      ..........                           ...+|         .+.. ..|+.+.+..+..+ .....|.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c  287 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC  287 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence            6654321110                           01111         1333 67888988765443 556688899


Q ss_pred             CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecC
Q 005361          306 TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLN  362 (700)
Q Consensus       306 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N  362 (700)
                      ++|+.+.+. +.++.....+|.++.+|+.++|..+ ++ .|....|   .+|+.+.|..+
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc
Confidence            999999997 5566566778999999999999875 54 5555444   46889998765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.43  E-value=2.2e-06  Score=90.75  Aligned_cols=258  Identities=14%  Similarity=0.122  Sum_probs=155.4

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      +++.+.+.. .++.+-..+|.++.+|+.++|..+ ++.+-..+|....|+.+.+..+ ++.+....|.+ .+|+.+.+..
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~  122 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPG  122 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTT-CCCSEEECCT
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceecc-CCcccccCCC
Confidence            566666653 355455667888888888888643 5555566666666777666543 43333344544 3677777765


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcC-----------------------------
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF-----------------------------  223 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------------------  223 (700)
                      +- .......|.+. +|+.+.+..+ ++......|..+.+++.+.+..+..                             
T Consensus       123 ~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
T 4h09_A          123 AT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF  199 (379)
T ss_dssp             TC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred             cc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence            42 21222233332 4444444322 2223333444444454444432211                             


Q ss_pred             ------CCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCC
Q 005361          224 ------SGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHG  296 (700)
Q Consensus       224 ------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~  296 (700)
                            .......+....+|+.+.+..+ +.......|.++..|+.+.+..+ +.......+.. .+|+.+.+..+ ++.
T Consensus       200 ~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~  276 (379)
T 4h09_A          200 TIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT  276 (379)
T ss_dssp             ECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE
T ss_pred             ccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-cee
Confidence                  1112234556677888887654 33344566788888999888763 33333333444 67888888654 554


Q ss_pred             CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecC
Q 005361          297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLN  362 (700)
Q Consensus       297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N  362 (700)
                      .....|.++++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++ .|....|   .+|+.+.+..+
T Consensus       277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence            55567888999999999988888777788999999999999765 54 5555444   35777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.28  E-value=8.8e-07  Score=77.87  Aligned_cols=71  Identities=24%  Similarity=0.373  Sum_probs=44.0

Q ss_pred             CCCEEEccCCcCCCCCchhhhc---CCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCC
Q 005361          331 KTNFMYLTGNKLTGPVPKYIFN---SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSA  407 (700)
Q Consensus       331 ~L~~L~L~~N~l~~~ip~~~~~---~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  407 (700)
                      +|+.|+|++|+|+ .+|...+.   +++.|+|++|        +|.|+|...|+..|+........      ...+.|..
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N--------P~~CdC~l~~l~~wl~~~~~~~~------~~~~~C~~   96 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN--------PWRCDCRLVPLRAWLAGRPERAP------YRDLRCVA   96 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS--------CCBCSGGGHHHHHHHHTSSCSGG------GTTCBCCB
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCC--------CeeccCccHHHHHHHHhCccccc------ccCcEeCc
Confidence            3444555555544 33333322   3455666666        56699999999999986643321      35788999


Q ss_pred             CCCCcceee
Q 005361          408 PADQYHYTL  416 (700)
Q Consensus       408 p~~~~~~~~  416 (700)
                      |....+..+
T Consensus        97 P~~l~g~~l  105 (130)
T 3rfe_A           97 PPALRGRLL  105 (130)
T ss_dssp             STTTTTCBG
T ss_pred             ChHHcCCCc
Confidence            887766543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=4.9e-07  Score=85.19  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=61.3

Q ss_pred             hhhCCCCCcEEEeecC-cCCCC----ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcc
Q 005361          206 ELTKLTNLNDLRISDN-NFSGK----IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAF  276 (700)
Q Consensus       206 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~  276 (700)
                      .+...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...                  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n------------------   92 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN------------------   92 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC------------------
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC------------------
Confidence            3445566666666666 55421    223344445566666666555431    11222222                  


Q ss_pred             cccCccCccEEEcccCCCCCC----CchhhcCCCCCCEEec--cCCCCCCC----ChhhHhcCCCCCEEEccCCcCC
Q 005361          277 PKLDKMNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDL--SFNNLTGG----IPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       277 ~~l~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                           .+|++|+|++|.|+..    +...+...++|++|+|  ++|.|...    +...+...++|+.|+|++|.+.
T Consensus        93 -----~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 -----NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             -----SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             -----CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                 3445555555555432    2344555567777777  66777632    2334555677777777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.10  E-value=7.8e-07  Score=83.78  Aligned_cols=63  Identities=21%  Similarity=0.248  Sum_probs=27.3

Q ss_pred             CCCccEEEeeecCCCCc----CchhhhCCCCCcEEEeecCcCCCC----ChhhhcCCCcccEEEc--cCCCCC
Q 005361          186 LINLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGK----IPEFIGKWKKIQKLHI--QGSSLE  248 (700)
Q Consensus       186 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~  248 (700)
                      .++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|  ++|.+.
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            34444444444444321    122333344455555555554421    2233334444555555  445444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.08  E-value=3.3e-07  Score=90.93  Aligned_cols=41  Identities=29%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             CCCCCCEEEccCCcCCC--CCCccccCCCCccEEEeeecCCCC
Q 005361          161 NITTLKNLSIEGNLFTG--SIPPDIRKLINLQKLILSSNSFTG  201 (700)
Q Consensus       161 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~  201 (700)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|.+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            45666666666666664  223344455555555555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.03  E-value=4.9e-05  Score=80.18  Aligned_cols=248  Identities=15%  Similarity=0.097  Sum_probs=158.4

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      .+++.+.|..+ ++..-..+|.+. +|+.+.+..+ ++.+...+|....|+.+.+..+- +.+....|.+. +|+.+.+.
T Consensus        69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~  143 (379)
T 4h09_A           69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIP  143 (379)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTTC-CEECTTTTTTC-CCCEEEEC
T ss_pred             CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCCcc-ccccccccccc-eeeeeecc
Confidence            36888888643 665556677776 5777776533 44344455555457777776542 21222333332 44444443


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecC-----------------------------------CCCcCchhhhCCCCCcEE
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNS-----------------------------------FTGELPAELTKLTNLNDL  216 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~-----------------------------------l~~~~~~~~~~l~~L~~L  216 (700)
                      .+ ++......|..+.+|+.+.+..+.                                   ........+....+|+.+
T Consensus       144 ~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i  222 (379)
T 4h09_A          144 KS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKI  222 (379)
T ss_dssp             TT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEE
T ss_pred             ce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccccccccee
Confidence            32 221223334444444444332211                                   111233456677889998


Q ss_pred             EeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCC
Q 005361          217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIH  295 (700)
Q Consensus       217 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~  295 (700)
                      .+..+ +.......+..+..|+.+.+..+ ++..-...|.++.+|+.+.+.. .+.......+.. .+|+.+.+.++.++
T Consensus       223 ~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~  299 (379)
T 4h09_A          223 TITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIE  299 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred             eeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccc
Confidence            88654 33344567788899999999765 5545566788999999999875 344444444555 89999999999898


Q ss_pred             CCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361          296 GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF  351 (700)
Q Consensus       296 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~  351 (700)
                      .+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++ .|....|
T Consensus       300 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF  352 (379)
T 4h09_A          300 TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAF  352 (379)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT
T ss_pred             eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHh
Confidence            777789999999999999865 66566778999999999998765 44 4544444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=6.5e-06  Score=81.59  Aligned_cols=63  Identities=24%  Similarity=0.359  Sum_probs=41.7

Q ss_pred             CccEEEcccCCCCC--CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCC--CCCEEEccCCcCCCCCc
Q 005361          283 NLKTLILTKCLIHG--EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA--KTNFMYLTGNKLTGPVP  347 (700)
Q Consensus       283 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~ip  347 (700)
                      +|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++.+|
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            45555555666665  3345566778888888888888754  2334444  78888888888877665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=5.6e-05  Score=69.43  Aligned_cols=82  Identities=13%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCCChhhhcCC----CcccEEEccCCC-CCCCchhhhhcCCCC
Q 005361          188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGKIPEFIGKW----KKIQKLHIQGSS-LEGPIPASISALTSL  261 (700)
Q Consensus       188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L  261 (700)
                      +|+.||++++.++..--..+..+++|++|+|++|. +++.--..+..+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34444444444433222333444444444444442 332222223322    245555555442 333222334444555


Q ss_pred             CEEEcCCC
Q 005361          262 TDLRISDL  269 (700)
Q Consensus       262 ~~L~l~~n  269 (700)
                      +.|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55554443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.56  E-value=4.1e-05  Score=70.36  Aligned_cols=86  Identities=10%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             ccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc-CCCCCCccccCC----CCccEEEeeecC-CCCcCchhhhCC
Q 005361          137 ASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL-FTGSIPPDIRKL----INLQKLILSSNS-FTGELPAELTKL  210 (700)
Q Consensus       137 ~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l  210 (700)
                      ..+.|+.||++++.++..--..+.++++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+..+
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            44568999999988876555556788888888888875 442111223332    357777777764 554333445666


Q ss_pred             CCCcEEEeecCc
Q 005361          211 TNLNDLRISDNN  222 (700)
Q Consensus       211 ~~L~~L~L~~n~  222 (700)
                      ++|++|+|+++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.57  E-value=0.0011  Score=61.90  Aligned_cols=61  Identities=7%  Similarity=-0.019  Sum_probs=28.6

Q ss_pred             cCccEEEcccCCCCCC----CchhhcCCCCCCEEeccCCCC---CC----CChhhHhcCCCCCEEEccCCcC
Q 005361          282 MNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDLSFNNL---TG----GIPTTFEKLAKTNFMYLTGNKL  342 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l---~~----~~p~~~~~l~~L~~L~L~~N~l  342 (700)
                      ..|+.|+|++|.|+..    +-..+..-+.|++|+|++|..   ..    .+-..+..-+.|+.|+++.|.+
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3455555555555421    222333345566666665422   21    1223445556666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.23  E-value=0.0023  Score=59.77  Aligned_cols=38  Identities=11%  Similarity=0.209  Sum_probs=21.7

Q ss_pred             cCccEEEcccC---CCCC----CCchhhcCCCCCCEEeccCCCCC
Q 005361          282 MNLKTLILTKC---LIHG----EIPDYIGDMTKLKNIDLSFNNLT  319 (700)
Q Consensus       282 ~~L~~L~L~~n---~l~~----~~p~~~~~l~~L~~L~Ls~N~l~  319 (700)
                      ..|++|+|++|   .+..    .+...+..-++|+.|+|+.|.+.
T Consensus       126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            45666666544   2221    12334555578888888877653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.76  E-value=0.019  Score=49.92  Aligned_cols=56  Identities=18%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             EEEcccCCCC-CCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361          286 TLILTKCLIH-GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT  343 (700)
Q Consensus       286 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  343 (700)
                      .++.+++.++ ..+|..+  .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4566666665 2334322  246888888888888777777888888888888888775

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=93.53  E-value=0.0082  Score=61.25  Aligned_cols=34  Identities=41%  Similarity=0.562  Sum_probs=28.8

Q ss_pred             CccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361          665 LYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       665 ~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      ++++.++..++++|....+||+||||.||+|+..
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~   61 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR   61 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECT
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEEC
Confidence            4666777889999999999999999999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=92.19  E-value=0.041  Score=55.57  Aligned_cols=18  Identities=39%  Similarity=0.820  Sum_probs=16.2

Q ss_pred             CCccccCCCcceeEEEeC
Q 005361          681 ANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       681 ~~~iG~GgfG~VYkg~L~  698 (700)
                      .++||+||||+||||++.
T Consensus        41 ~~~iG~G~fG~Vy~~~~~   58 (307)
T 3omv_A           41 STRIGSGSFGTVYKGKWH   58 (307)
T ss_dssp             EEECCCCSSSEEEEEESS
T ss_pred             eeEEeeCCCcEEEEEEEC
Confidence            678999999999999875

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=91.02  E-value=0.0096  Score=60.48  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=20.1

Q ss_pred             cCCCcCCccccCCCcceeEEEeC
Q 005361          676 NNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       676 ~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      ++|....+||+||||+||+|...
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~   79 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSK   79 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET
T ss_pred             hheeeeheeccCCCeEEEEEEEC
Confidence            56877889999999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=90.80  E-value=0.045  Score=55.92  Aligned_cols=19  Identities=32%  Similarity=0.594  Sum_probs=16.4

Q ss_pred             cCCccccCCCcceeEEEeC
Q 005361          680 PANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       680 ~~~~iG~GgfG~VYkg~L~  698 (700)
                      -..+||+||||+||||.+.
T Consensus        45 l~~~LG~G~fG~Vy~a~~~   63 (329)
T 4aoj_A           45 LKWELGEGAFGKVFLAECH   63 (329)
T ss_dssp             EEEEEEECSSEEEEEEEES
T ss_pred             EEEEEccCCCcEEEEEEEC
Confidence            3678999999999999864

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=89.93  E-value=0.04  Score=58.85  Aligned_cols=33  Identities=24%  Similarity=0.522  Sum_probs=29.7

Q ss_pred             ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361          666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      +.+++++.++++|...++||+||||+||+|...
T Consensus        64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~   96 (437)
T 4aw2_A           64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLK   96 (437)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEET
T ss_pred             chhhcccCChhheEEEEEEEeCCCEEEEEEEEc
Confidence            567888889999999999999999999999864

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=87.56  E-value=0.16  Score=51.72  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=16.7

Q ss_pred             CccHHHHHHHHcCCCcC---------CccccCCCcceeEEEe
Q 005361          665 LYTLRQIKAATNNFDPA---------NKVGEGGFGSVYKVNV  697 (700)
Q Consensus       665 ~f~~~el~~AT~~Fs~~---------~~iG~GgfG~VYkg~L  697 (700)
                      ..++.+...++..|..+         .+||+||||.||+|..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~   70 (325)
T 3kul_A           29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRL   70 (325)
T ss_dssp             --------------CCBCCGGGEEEEEEEEETTTEEEEEEEE
T ss_pred             cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEE
Confidence            46788888888888654         7899999999999986

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=84.79  E-value=0.17  Score=52.13  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=16.9

Q ss_pred             CCCcCCccccCCCcceeEEEe
Q 005361          677 NFDPANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       677 ~Fs~~~~iG~GgfG~VYkg~L  697 (700)
                      +|.-.++||+|+||+||||..
T Consensus        65 ~~~l~~~LG~G~fG~Vy~a~~   85 (353)
T 4ase_A           65 RLKLGKPLGRGAFGQVIEADA   85 (353)
T ss_dssp             GEEEEEEEEECSSEEEEEEEE
T ss_pred             HeEEeeEEecCCCeEEEEEEE
Confidence            343457899999999999975

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=84.60  E-value=0.13  Score=54.25  Aligned_cols=34  Identities=21%  Similarity=0.503  Sum_probs=29.7

Q ss_pred             CccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361          665 LYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       665 ~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      .+.+++++..+++|...++||+||||+||++...
T Consensus        50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~   83 (412)
T 2vd5_A           50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMK   83 (412)
T ss_dssp             HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEET
T ss_pred             hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEEC
Confidence            3677888888999999999999999999999753

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=82.93  E-value=0.18  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.521  Sum_probs=17.4

Q ss_pred             cCCCcCCccccCCCcceeEEEe
Q 005361          676 NNFDPANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       676 ~~Fs~~~~iG~GgfG~VYkg~L  697 (700)
                      +.|....+||+||||+||+|+-
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~   79 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKD   79 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEE
T ss_pred             hheEeCcEeccCCCeEEEEEEE
Confidence            3454566899999999999973

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=82.13  E-value=0.2  Score=52.85  Aligned_cols=33  Identities=21%  Similarity=0.519  Sum_probs=27.7

Q ss_pred             ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361          666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM  698 (700)
Q Consensus       666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~  698 (700)
                      ..+++++.++++|....+||+||||+||++...
T Consensus        59 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~   91 (410)
T 3v8s_A           59 NKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK   91 (410)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEET
T ss_pred             HHHHhcccCccccEEEEEEEcCCCEEEEEEEEC
Confidence            345677778899998999999999999999754

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=80.72  E-value=0.35  Score=49.54  Aligned_cols=20  Identities=40%  Similarity=0.527  Sum_probs=16.3

Q ss_pred             CCcCCccccCCCcceeEEEe
Q 005361          678 FDPANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       678 Fs~~~~iG~GgfG~VYkg~L  697 (700)
                      |..-.+||+|+||+||+|+-
T Consensus        76 y~~~~~iG~G~fG~V~~a~~   95 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATV   95 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEE
T ss_pred             cEEeEEeecCcCeEEEEEEE
Confidence            44456799999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	700
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 99.4 bits (246), Expect = 2e-23
 Identities = 73/318 (22%), Positives = 116/318 (36%), Gaps = 23/318 (7%)

Query: 37  HAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATC 92
           + ++ +AL QI + LG       W    D C+    W             V CD  + T 
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN--RTWL-----------GVLCDTDTQTY 50

Query: 93  HVVTIALKAQNLTG--TLPTELSKLRYLKQLDLS--RNCLTGSFSPQWASLQLVELSVMG 148
            V  + L   NL     +P+ L+ L YL  L +    N +           QL  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 149 NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT 208
             +SG  P  L+ I TL  L    N  +G++PP I  L NL  +    N  +G +P    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 209 KLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
             + L        N              +  + +  + LEG       +  +   + ++ 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 269 LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328
              +          NL  L L    I+G +P  +  +  L ++++SFNNL G IP     
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 329 LAKTNFMYLTGNK-LTGP 345
           L + +      NK L G 
Sbjct: 290 LQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 194 LSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL--EGPI 251
           L +N   G LP  LT+L  L+ L +S NN  G+IP+  G  ++        +      P+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309

Query: 252 PA 253
           PA
Sbjct: 310 PA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 103 NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRL--SGPFPK 157
            + GTLP  L++L++L  L++S N L G   PQ  +LQ     +   N+     P P 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 5/189 (2%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
            +P D+    +   L L +N  T     +   L NL+ L + +N  S   P       K+
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE 297
           ++L++  + L+         L  L        K  +S F  L++M +  L        G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV 357
                  M KL  I ++  N+T         L +   ++L GNK+T      +   N   
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLA 198

Query: 358 DISLNNFTW 366
            + L+  + 
Sbjct: 199 KLGLSFNSI 207

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 4e-15
 Identities = 52/293 (17%), Positives = 101/293 (34%), Gaps = 28/293 (9%)

Query: 85  CDCSSATCH----------------VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCL 128
           C C                         + L+   +T     +   L+ L  L L  N +
Sbjct: 8   CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 129 TGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI 187
           +      +A L +L  L +  N+L     K+   +  L+    E      S+   + ++I
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247
            ++ L  +    +G        +  L+ +RI+D N +  IP+  G    + +LH+ G+ +
Sbjct: 128 VVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKI 183

Query: 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTK 307
                AS+  L +L  L +S    S      L        +        ++P  + D   
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 308 LKNIDLSFNNLTGGIPTTF------EKLAKTNFMYLTGNKLT-GPVPKYIFNS 353
           ++ + L  NN++      F       K A  + + L  N +    +    F  
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 43/247 (17%), Positives = 88/247 (35%), Gaps = 15/247 (6%)

Query: 93  HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS 152
           ++ T+ L    ++   P   + L  L++L LS+N L     P+     L EL V  N ++
Sbjct: 56  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--PEKMPKTLQELRVHENEIT 113

Query: 153 GPFPKVLTNIT--TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL 210
                V   +    +  L       +G      + +  L  + ++  + T  +P  L   
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--P 170

Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK 270
            +L +L +  N  +      +     + KL +  +S+      S++    L +L +++ K
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 271 GSESAFPKLDKMNLKTLILTKCLIHG------EIPDYIGDMTKLKNIDLSFNNLTGG--I 322
             +      D   ++ + L    I          P Y         + L  N +      
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290

Query: 323 PTTFEKL 329
           P+TF  +
Sbjct: 291 PSTFRCV 297

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-15
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 13/195 (6%)

Query: 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI 227
           L    N  +   P  I    NL +L L+ N         L  LTNL DL +++N  S   
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 228 PEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTL 287
           P  +    K+ +L +  + +    P +     +  +L  +     E   P  +  NL  L
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ---LEDISPISNLKNLTYL 312

Query: 288 ILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVP 347
            L    I    P  +  +TKL+ +  + N ++    ++   L   N++    N+++   P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 348 KYIFNSNKNVDISLN 362
                    + ++  
Sbjct: 369 LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 4e-14
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 92  CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRL 151
            ++  ++L    L       L+ L  L  LDL+ N ++   +P     +L EL +  N++
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQI 275

Query: 152 SGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLT 211
           S   P  L  +T L NL +  N         I  L NL  L L  N+ +   P  ++ LT
Sbjct: 276 SNISP--LAGLTALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDISP--VSSLT 329

Query: 212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
            L  L  ++N  S      +     I  L    + +    P  ++ LT +T L ++D
Sbjct: 330 KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 15/198 (7%)

Query: 143 ELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE 202
            L    N++S   P     +T L  LS+ GN         +  L NL  L L++N  +  
Sbjct: 201 SLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 203 LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262
            P  L+ LT L +L++  N  S  I    G          +    +    +++  LT L 
Sbjct: 257 AP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLKNLTYL- 312

Query: 263 DLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI 322
            L  +++    S    L    L+ L      +       + ++T +  +    N ++   
Sbjct: 313 TLYFNNISDI-SPVSSLT--KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 323 PTTFEKLAKTNFMYLTGN 340
           P     L +   + L   
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVE 143
               S   ++  + L   N++   P  +S L  L++L  + N ++       A+L  +  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173
           LS   N++S   P  L N+T +  L +   
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 9/157 (5%)

Query: 209 KLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISD 268
           KLTNL  L  ++N  S   P  I     + +L + G+ L+     ++++LT+LTDL +++
Sbjct: 195 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 250

Query: 269 LKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328
            + S  A P      L  L L    I    P  +  +T L N++L+ N L     +    
Sbjct: 251 NQISNLA-PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE--DISPISN 305

Query: 329 LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365
           L    ++ L  N ++   P       + +  + N  +
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 342

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 4/177 (2%)

Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237
           ++P  I      Q++ L  N  +    A      NL  L +  N  +            +
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 238 QKLHIQGSSLEGPI-PASISALTSLTDLRISDLKGSESAFP-KLDKMNLKTLILTKCLIH 295
           ++L +  ++    + PA+   L  L  L +      E           L+ L L    + 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 296 GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
               D   D+  L ++ L  N ++      F  L   + + L  N++    P    +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 32/285 (11%), Positives = 82/285 (28%), Gaps = 12/285 (4%)

Query: 85  CDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVEL 144
           C C +     VT +   Q L   +P  +      +++ L  N ++   +  + + + + +
Sbjct: 6   CVCYNEP--KVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 145 SV--MGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE 202
                                  +    +        P     L  L  L L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 203 LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262
            P     L  L  L + DN       +       +  L + G+ +      +   L SL 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 263 DLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEI-PDYIGDMTKLKNIDLSFNNLTGG 321
            L +   + +         +     +         +  + +  +  L+ + L+ N     
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 322 IPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV-DISLNNFT 365
                   A       + +++   +P+ +  + +++  ++ N+  
Sbjct: 241 CRAR-PLWAWLQKFRGSSSEVPCSLPQRL--AGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 42/254 (16%), Positives = 66/254 (25%), Gaps = 28/254 (11%)

Query: 68  NWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC 127
           N  +                +               L    P     L  L  L L R  
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 128 LTGSF-SPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL 186
           L             L  L +  N L         ++  L +L + GN  +       R L
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 187 INLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSS 246
            +L +L+L  N      P     L  L  L +  NN S    E +   + +Q L +  + 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 247 LEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMT 306
                           D R   L              L+    +   +   +P  +    
Sbjct: 237 WVC-------------DCRARPLWA-----------WLQKFRGSSSEVPCSLPQRLAGRD 272

Query: 307 KLKNIDLSFNNLTG 320
                 L+ N+L G
Sbjct: 273 LK---RLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 30/257 (11%), Positives = 83/257 (32%), Gaps = 14/257 (5%)

Query: 121 LDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIP 180
           LDL+   L    + +  S  ++      + +  P  +  +    ++++ +  ++   S  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTL 63

Query: 181 PDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE---------- 229
             I  +   LQ L L     +  +   L K +NL  L +S  +   +             
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLIL 289
                        +   +     +      +L+  R +  K   S   +     +   + 
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 290 TKCLIHGEIPDYIGDMTKLKNIDLSF-NNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK 348
              ++  +       +  L+++ LS   ++         ++     + + G    G +  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 349 YIFNSNKNVDISLNNFT 365
            +  +  ++ I+ ++FT
Sbjct: 244 -LKEALPHLQINCSHFT 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 38/258 (14%), Positives = 72/258 (27%), Gaps = 24/258 (9%)

Query: 101 AQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL--QLVELSVMGNRLSGPFPKV 158
            ++       E      ++ +DLS + +  S      S   +L  LS+ G RLS P    
Sbjct: 31  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

Query: 159 LTNITTLKNLSIE--GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDL 216
           L   + L  L++         ++   +     L +                  L+   D 
Sbjct: 91  LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE----------------LNLSWCFDF 134

Query: 217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAF 276
                  +            +          +              DL  S +  ++   
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 277 PKLDKMNLKTLILTKC-LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335
                  L+ L L++C  I  E    +G++  LK + +      G +    E L      
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-- 252

Query: 336 YLTGNKLTGPVPKYIFNS 353
            +  +  T      I N 
Sbjct: 253 -INCSHFTTIARPTIGNK 269

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 6/207 (2%)

Query: 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219
           + + +   ++ +    T ++PPD+ K  +   L LS N       A L   T L  L + 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKL 279
                    +  G    +  L +  + L+       +           +   S       
Sbjct: 64  --RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 280 DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
               L+ L L    +    P  +    KL+ + L+ NNLT         L   + + L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 340 NKLTGPVPKYIFNSNKNVDISLNNFTW 366
           N L   +PK  F S+      L+   W
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 48/240 (20%), Positives = 73/240 (30%), Gaps = 36/240 (15%)

Query: 82  NVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-Q 140
           +  C+ S    H+  +    +NLT  LP +L K      L LS N L            +
Sbjct: 1   HPICEVSKVASHL-EVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTR 56

Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSI--EGNLFTGSIPPDIRKLINLQKLILSSNS 198
           L +L      L       L    TL  L      +    S+P   + L  L  L +S N 
Sbjct: 57  LTQL-----NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISAL 258
            T      L  L  L +L +  N      P  +    K++KL +  ++L       ++ L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 259 TSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNL 318
            +L  L + +                             IP        L    L  N  
Sbjct: 172 ENLDTLLLQENSLY------------------------TIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 4/113 (3%)

Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLK 166
           T+   L +L  +  LDLS N L        A   L  L    N L               
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE--LPAELTK-LTNLNDL 216
            L     L   +    +     L  L L  NS   E  +   L + L +++ +
Sbjct: 71  LLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 8/117 (6%)

Query: 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE-GNLFTG 177
           + L L+   LT         L +  L +  NRL    P     +  L+ L +   +    
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 178 SIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNNFSGKIPEFIGK 233
                +  L  LQ+L+L +N          L     L  L +  N+          +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 27/131 (20%)

Query: 190 QKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249
           + L L+    T      L +L  +  L +S N      P             ++      
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALR------CLEVLQASD 52

Query: 250 PIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLK 309
               ++  + +L  L+   L  +                    L        +    +L 
Sbjct: 53  NALENVDGVANLPRLQELLLCNN-------------------RLQQSAAIQPLVSCPRLV 93

Query: 310 NIDLSFNNLTG 320
            ++L  N+L  
Sbjct: 94  LLNLQGNSLCQ 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 8e-07
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 161 NITTLKNLSIEGNLFTG----SIPPDIRKLINLQKLILSSNSFTGELPAELTK-----LT 211
             + L+ L +     +     S+   +    +L++L LS+N        +L +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 212 NLNDLRISDNNFSGKIPEFIGKWKK 236
            L  L + D  +S ++ + +   +K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 165 LKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGE----LPAELTKLTNLNDLRIS 219
           +++L I+    + +   ++   L   Q + L     T      + + L     L +L + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249
            N         + +  +     IQ  SL+ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 140 QLVELSVMGNRLSG----PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI-----NLQ 190
            L  L +    +S          L    +L+ L +  N    +    + + +      L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 191 KLILSSNSFTGELPAELTKL-TNLNDLRI 218
           +L+L    ++ E+   L  L  +   LR+
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 187 INLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNFSGK----IPEFIGKWKKIQKLH 241
           +++Q L +     +    AEL   L     +R+ D   +      I   +     + +L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 242 IQGSSLEGPIPASISAL-----TSLTDLRISD 268
           ++ + L       +          +  L + +
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 17/167 (10%), Positives = 40/167 (23%), Gaps = 6/167 (3%)

Query: 260 SLTDLRISDLKGSESAFPKLDKM--NLKTLILTKCLIHGE----IPDYIGDMTKLKNIDL 313
            +  L I   + S++ + +L  +    + + L  C +       I   +     L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 314 SFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIE 373
             N L         +  +T    +    L             +  +       E      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 374 CPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHYTLHINC 420
               +   +        +       L      +A  +     L    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 169

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 147 MGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE 206
             N  S     +     +L+ L++  N     +P        L++LI S N    E+P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPEL 322

Query: 207 LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI 242
              L  L+   +  N    + P+       ++ L +
Sbjct: 323 PQNLKQLH---VEYNPLR-EFPDIPE---SVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 56  WNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKL 115
            +            +L    +     +V+ +  S    +          +  + +     
Sbjct: 224 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 283

Query: 116 RYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLF 175
             L++L++S N L          L+ +  S   N L+   P++  N   LK L +E N  
Sbjct: 284 PSLEELNVSNNKLI-ELPALPPRLERLIAS--FNHLAE-VPELPQN---LKQLHVEYNPL 336

Query: 176 TGSIPPDIRKLINLQ 190
               P     + +L+
Sbjct: 337 R-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247
              +L L++   +  LP     L +L     S N+ + ++PE     K +   +    +L
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 248 EGPIP 252
               P
Sbjct: 94  SDLPP 98

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 9/39 (23%)

Query: 666 YTLRQIKAATNNFDPA---------NKVGEGGFGSVYKV 695
           +T      A   F              +G G FG V   
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSG 45

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 164 TLKNLSIEGNLFTG----SIPPDIRKLINLQKLILSSNSFTGE----LPAELTKLTNLND 215
           +++  S++ +  T     S+   + +  ++++++LS N+   E    L   +    +L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 216 LRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247
              SD        E     + + +  ++   L
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 185 KLINLQKLILSSNSFTGELPAEL-----TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239
           + I LQ L L  N    +    L      K+ +L  L ++ N F  +  + + + +++  
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFS 329

Query: 240 LHIQGSSLE 248
              +G   E
Sbjct: 330 TRGRGELDE 338

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 5/152 (3%)

Query: 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
           L   +SK     Q  L    L     P   +  +  +    + ++     +  NI  L +
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 168 LSIEGNLFTG--SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG 225
           L++  N       +   ++K  NL+ L LS N    E   +  K   L +L +  N+ S 
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 226 KIPEFIGKWKKIQKLHIQGSSLEG-PIPASIS 256
              +       I++   +   L+G  +P  I+
Sbjct: 130 TFRDQSTYISAIRERFPKLLRLDGHELPPPIA 161

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 23/203 (11%)

Query: 156 PKVLTNITTLKNLS--IEGNLFTGSI--PPDIRKLINLQKLILSSNSFTGELPAELTKLT 211
           P  +  I +    +  I+ NL   S+       +L ++ ++I +++         +  L 
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLP 68

Query: 212 NLNDLRISDNNFSGKIP---------------EFIGKWKKIQKLHIQGSSLEGPIPASIS 256
           N+  L ++ N  +   P               +            ++  SLE    + I+
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 257 ALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN 316
            L  L  L    L  ++     +     K   L+           +  +TKL+N+ LS N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 317 NLTGGIPTTFEKLAKTNFMYLTG 339
           +++         L   + + L  
Sbjct: 189 HISD--LRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	700
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.29
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.37
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	87.48

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.5e-36  Score=311.17  Aligned_cols=295  Identities=25%  Similarity=0.428  Sum_probs=246.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCC--cC
Q 005361           35 KLHAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTG--TL  108 (700)
Q Consensus        35 ~~~~~e~~al~~l~~~~~~----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~--~~  108 (700)
                      -|.++|++||++|++++..    .+|..+.|+|.  +.|           .||+|+..+...||+.|+|+++++.|  .+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~--~~w-----------~gv~C~~~~~~~~v~~L~L~~~~l~g~~~l   68 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN--RTW-----------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT--TCS-----------TTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC--CcC-----------CCeEEeCCCCcEEEEEEECCCCCCCCCCCC
Confidence            3789999999999999965    57988889993  258           89999987677799999999999988  47


Q ss_pred             chhhcCCCCCCEEECcC-CCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361          109 PTELSKLRYLKQLDLSR-NCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL  186 (700)
Q Consensus       109 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  186 (700)
                      |+.+++|++|++|+|++ |.++|.+|..+..++ |++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..+.++
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence            89999999999999986 889988999899888 9999999999998888888899999999999999888889999999


Q ss_pred             CCccEEEeeecCCCCcCchhhhCCCCC-cEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEE
Q 005361          187 INLQKLILSSNSFTGELPAELTKLTNL-NDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR  265 (700)
Q Consensus       187 ~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  265 (700)
                      ++|+.+++++|.+.+.+|..+..+.++ +.++++.|++++..+..+..+.. ..++++.+...+.+|..+..+++|+.++
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             cccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            999999999999988888888888776 78888899888888887777654 4688888888877777777776666665


Q ss_pred             cCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCC
Q 005361          266 ISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP  345 (700)
Q Consensus       266 l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  345 (700)
                      +++                       |.+++.+| .+..+++|+.|+|++|+++|.+|+.|.++++|+.|+|++|+|+|.
T Consensus       228 ~~~-----------------------~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         228 LAK-----------------------NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CCS-----------------------SEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccc-----------------------cccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            554                       55554444 466778888888888888888888888888888888888888888


Q ss_pred             Cchhh-hcCCCeeeeecCc-cccc
Q 005361          346 VPKYI-FNSNKNVDISLNN-FTWE  367 (700)
Q Consensus       346 ip~~~-~~~l~~L~ls~N~-l~~~  367 (700)
                      +|..- +.+++.+++++|+ +.|.
T Consensus       284 iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         284 IPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             CCCcccCCCCCHHHhCCCccccCC
Confidence            88642 4577788888887 4543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=5e-26  Score=234.33  Aligned_cols=230  Identities=26%  Similarity=0.423  Sum_probs=169.2

Q ss_pred             ccEEEccCCCCCC--CCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEE
Q 005361          141 LVELSVMGNRLSG--PFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR  217 (700)
Q Consensus       141 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  217 (700)
                      ++.|+|++|.+.+  .+|..++++++|++|+|++ |.++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4444444444443  3556666667777777764 566666666677777777777777776666666666667777777


Q ss_pred             eecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCC-CEEEcCCCCCCCCcccccCccCccEEEcccCCCCC
Q 005361          218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL-TDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG  296 (700)
Q Consensus       218 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~  296 (700)
                      ++.|.+.+.+|..+..+++|+.+++++|.+.+.+|..+..+..+ +.+++++|.+.......+....+..+++.++.+.+
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~  211 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG  211 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77776666666667777777777777777666666666666554 56666665554444444444556678888899999


Q ss_pred             CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361          297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP  371 (700)
Q Consensus       297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~  371 (700)
                      .+|..+..+++|+.|++++|.+.+.+| .+..+++|+.|+|++|+++|.+|..+.  ++++.|+|++|+++|.+|+.
T Consensus       212 ~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999997655 678899999999999999999999875  47999999999999999963

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7e-25  Score=219.88  Aligned_cols=211  Identities=21%  Similarity=0.205  Sum_probs=136.7

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      +.+++.+++.++ .+|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|.++. ++ .+..+++|++|+|++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            334455555555 2343332  245555555555554333445555555555555555542 22 133445555555555


Q ss_pred             CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCc
Q 005361          221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIP  299 (700)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p  299 (700)
                      |+++                        . .+..+..+++|+.|+++++.+.......+.. .+++.|++++|.++...+
T Consensus        87 N~l~------------------------~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          87 NQLQ------------------------S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             SCCS------------------------S-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cccc------------------------c-cccccccccccccccccccccceeeccccccccccccccccccccceecc
Confidence            5444                        2 2333444455555555544444333333333 566677777788887777


Q ss_pred             hhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCcccccCCCCCCCCCC
Q 005361          300 DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFTWESSDPIECPRG  377 (700)
Q Consensus       300 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~~~~p~~~~C~~~  377 (700)
                      ..+..+++|+.|++++|+|++..+..|..+++|+.|+|++|+|+ .+|..++.  +++.|+|++|        +|.|+|.
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N--------p~~CdC~  212 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN--------PWLCNCE  212 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC--------CBCCSGG
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCC--------CCCCCcc
Confidence            78888999999999999999888888999999999999999999 88888764  6889999999        6679999


Q ss_pred             CccceecccCCCC
Q 005361          378 SVNLVESYSSPRN  390 (700)
Q Consensus       378 ~~~~~~~~~~~~~  390 (700)
                      ..|+.+|+.....
T Consensus       213 ~~~l~~wl~~~~~  225 (266)
T d1p9ag_         213 ILYFRRWLQDNAE  225 (266)
T ss_dssp             GHHHHHHHHHTGG
T ss_pred             hHHHHHHHHhccc
Confidence            9999999875433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.5e-25  Score=221.62  Aligned_cols=234  Identities=18%  Similarity=0.188  Sum_probs=119.2

Q ss_pred             EecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCC
Q 005361           98 ALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTG  177 (700)
Q Consensus        98 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  177 (700)
                      +.++.+++ .+|..+.  +.+++|+|++|+++...+..|..                       +++|++|++++|++..
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~-----------------------l~~L~~L~ls~n~l~~   70 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRA-----------------------CRNLTILWLHSNVLAR   70 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTT-----------------------CTTCCEEECCSSCCCE
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhc-----------------------cccccccccccccccc
Confidence            34455555 3343332  35666666666666544444444                       4444444444444444


Q ss_pred             CCCccccCCCCccEEEee-ecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhh
Q 005361          178 SIPPDIRKLINLQKLILS-SNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS  256 (700)
Q Consensus       178 ~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  256 (700)
                      ..+..+..+..++.+... .+.++...+..|.++++|++|++++|.+....+..+...++|+.+++++|.++...+..|.
T Consensus        71 i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~  150 (284)
T d1ozna_          71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc
Confidence            444444444444444433 2333333344455555555555555555544444455555555566655555544444454


Q ss_pred             cCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEE
Q 005361          257 ALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMY  336 (700)
Q Consensus       257 ~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  336 (700)
                      .+++|+.|++++                       |++++..+..|.++++|+.|++++|++++..|..|..+++|+.|+
T Consensus       151 ~~~~L~~L~l~~-----------------------N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         151 DLGNLTHLFLHG-----------------------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TCTTCCEEECCS-----------------------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccchhhccccc-----------------------CcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            444444444333                       333333344444555555555555555544455555555555555


Q ss_pred             ccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCCCCCCCCCccceecccCC
Q 005361          337 LTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSP  388 (700)
Q Consensus       337 L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~  388 (700)
                      +++|++++..+..+.  .+++.|++++|+        |.|+|...|+..|+...
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~--------l~C~C~~~~l~~~l~~~  253 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNP--------WVCDCRARPLWAWLQKF  253 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSC--------EECSGGGHHHHHHHHHC
T ss_pred             ccccccccccccccccccccCEEEecCCC--------CCCCccchHHHHHHHhC
Confidence            555555533333321  245556666663        33999988988888743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.9e-23  Score=214.02  Aligned_cols=260  Identities=21%  Similarity=0.275  Sum_probs=206.4

Q ss_pred             EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361           95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN  173 (700)
Q Consensus        95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  173 (700)
                      +.++-++.+++ .+|..+.  ++|++|+|++|+++...+..|..++ |++|++++|.+....|..|.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            34555566676 3454442  6899999999999887777888887 999999999999888888999999999999999


Q ss_pred             cCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC--CCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS--GKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +++ .+|..+  ...|+.|++..|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.+.. +
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            988 455443  357889999999998776777778888888888877543  2345567788899999999998874 4


Q ss_pred             hhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCC
Q 005361          252 PASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA  330 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  330 (700)
                      |..  .+++|+.|++++|.........+.. ..++.|++++|.+++..+..+..+++|++|+|++|+|+ .+|+.|..++
T Consensus       166 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~  242 (305)
T d1xkua_         166 PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK  242 (305)
T ss_dssp             CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred             Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccccc
Confidence            433  3678999999987776665555666 88999999999999888889999999999999999998 5678899999


Q ss_pred             CCCEEEccCCcCCCCCchhhh---------cCCCeeeeecCccc
Q 005361          331 KTNFMYLTGNKLTGPVPKYIF---------NSNKNVDISLNNFT  365 (700)
Q Consensus       331 ~L~~L~L~~N~l~~~ip~~~~---------~~l~~L~ls~N~l~  365 (700)
                      +|+.|+|++|+|+ .++...+         .+++.|+|++|++.
T Consensus       243 ~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         243 YIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999999999998 5554332         35778999999764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.5e-22  Score=205.46  Aligned_cols=267  Identities=21%  Similarity=0.243  Sum_probs=221.2

Q ss_pred             CCeeeCCC-------CCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCC
Q 005361           81 SNVTCDCS-------SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLS  152 (700)
Q Consensus        81 ~~v~C~~~-------~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~  152 (700)
                      ..|.|...       +.+..++.|+|++|+++...+.+|.++++|++|++++|.+....|..|..++ |++|++++|+++
T Consensus        13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            56666432       2346799999999999987777899999999999999999998899999988 999999999998


Q ss_pred             CCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCC--CcCchhhhCCCCCcEEEeecCcCCCCChhh
Q 005361          153 GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRISDNNFSGKIPEF  230 (700)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  230 (700)
                      . +|..+  ...|+.|++..|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.++. ++..
T Consensus        93 ~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~  168 (305)
T d1xkua_          93 E-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG  168 (305)
T ss_dssp             B-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS
T ss_pred             c-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc
Confidence            4 55433  458999999999999766667778888999999887654  2345678899999999999999874 4433


Q ss_pred             hcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCC
Q 005361          231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLK  309 (700)
Q Consensus       231 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~  309 (700)
                        .+++|+.|++++|......+..|..++.++.|++++|.+.......+.. ++|++|+|++|+|+ .+|..+..+++|+
T Consensus       169 --~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         169 --LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             --CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             --cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence              3678999999999999888899999999999999998887766666666 89999999999999 5677899999999


Q ss_pred             EEeccCCCCCCCChhhH------hcCCCCCEEEccCCcCC-CCCchhhhcCC
Q 005361          310 NIDLSFNNLTGGIPTTF------EKLAKTNFMYLTGNKLT-GPVPKYIFNSN  354 (700)
Q Consensus       310 ~L~Ls~N~l~~~~p~~~------~~l~~L~~L~L~~N~l~-~~ip~~~~~~l  354 (700)
                      .|+|++|+|+......|      ..+++|+.|+|++|.+. ..+++..+..+
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            99999999996544333      45788999999999985 46666665543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.9e-23  Score=209.21  Aligned_cols=171  Identities=19%  Similarity=0.207  Sum_probs=122.9

Q ss_pred             CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEcc-CCCCCCCCchhcCCCCCCCE
Q 005361           90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVM-GNRLSGPFPKVLTNITTLKN  167 (700)
Q Consensus        90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~-~n~l~~~~p~~~~~l~~L~~  167 (700)
                      .+..++.|+|++|.++...+..|.++++|++|++++|.+....+..+.... ++.+... .+.++...+..|.++++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            345689999999999988888899999999999999999987777777666 7776654 45666666777788888888


Q ss_pred             EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361          168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL  247 (700)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  247 (700)
                      |++++|.+....+..+..+.+|+.+++++|.++++.+..|..+++|++|++++|+++...+..+..+++|+.+++++|.+
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            88888877755566666777777777777777755556666666677777666666655555566666666666666655


Q ss_pred             CCCchhhhhcCCC
Q 005361          248 EGPIPASISALTS  260 (700)
Q Consensus       248 ~~~~~~~~~~l~~  260 (700)
                      .+..|..|..+++
T Consensus       190 ~~i~~~~f~~l~~  202 (284)
T d1ozna_         190 AHVHPHAFRDLGR  202 (284)
T ss_dssp             CEECTTTTTTCTT
T ss_pred             cccChhHhhhhhh
Confidence            5444444444433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.2e-21  Score=207.11  Aligned_cols=258  Identities=24%  Similarity=0.335  Sum_probs=166.3

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .++++|+++++.++..  +.+..|++|++|+|++|++++..+  +..++ |++|++++|.+.+..+  +.++++|+.|++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc--cccccccccccc
Confidence            3577777777777643  346677777777777777776543  66666 7777777777775432  667777777777


Q ss_pred             cCCcCCCC---------------------------------------------------------------CCccccCCC
Q 005361          171 EGNLFTGS---------------------------------------------------------------IPPDIRKLI  187 (700)
Q Consensus       171 ~~n~l~~~---------------------------------------------------------------~p~~~~~l~  187 (700)
                      +++.+++.                                                               ....+..++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            76655421                                                               112344567


Q ss_pred             CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361          188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS  267 (700)
Q Consensus       188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  267 (700)
                      +++.+++++|.+++..+  +...++|++|++++|.++. + ..+..+++|+.|++++|.+++..+  +..+++|+.|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence            77888888888775543  4556778888888887774 2 356777888888888888775433  6777888888887


Q ss_pred             CCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCC
Q 005361          268 DLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPV  346 (700)
Q Consensus       268 ~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i  346 (700)
                      ++.+...  +.+.. ..++.+.+..|.+++.  ..+..+++++.|++++|++++..  .+..+++|+.|++++|++++ +
T Consensus       272 ~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l  344 (384)
T d2omza2         272 ANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V  344 (384)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C
T ss_pred             CcccCCC--Cccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C
Confidence            7665432  22333 5666677777766642  23555666777777777776432  25666777777777776663 3


Q ss_pred             ch-hhhcCCCeeeeecCcccccC
Q 005361          347 PK-YIFNSNKNVDISLNNFTWES  368 (700)
Q Consensus       347 p~-~~~~~l~~L~ls~N~l~~~~  368 (700)
                      +. .-+++|+.|++++|++++..
T Consensus       345 ~~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         345 SSLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             GGGGGCTTCCEEECCSSCCCBCG
T ss_pred             hhHcCCCCCCEEECCCCcCCCCh
Confidence            31 11345667777777666544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-21  Score=192.07  Aligned_cols=203  Identities=22%  Similarity=0.212  Sum_probs=168.4

Q ss_pred             cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361          113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL  192 (700)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (700)
                      .+...+.+.+.+++.++.+ |..+. ..+++|+|++|.+++..+..|.++++|++|+|++|+++ .+| .+..+++|+.|
T Consensus         7 ~~~~~~~~v~C~~~~L~~i-P~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTAL-PPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTL   82 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSC-CSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEE
T ss_pred             cccCCCeEEEccCCCCCee-CcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccc
Confidence            4566777889999999964 54332 23999999999999777788999999999999999998 344 46789999999


Q ss_pred             EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361          193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS  272 (700)
Q Consensus       193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  272 (700)
                      +|++|+++ ..+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.+....+..+..+++|+.|        
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l--------  153 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL--------  153 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE--------
T ss_pred             cccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc--------
Confidence            99999998 456678899999999999999988777888888999999999998886666666666655555        


Q ss_pred             CCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361          273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG  344 (700)
Q Consensus       273 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  344 (700)
                                     ++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|.+.-
T Consensus       154 ---------------~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         154 ---------------SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             ---------------ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ---------------ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence                           55557777777788889999999999999999 778788889999999999998863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.5e-19  Score=190.75  Aligned_cols=275  Identities=24%  Similarity=0.329  Sum_probs=207.2

Q ss_pred             EecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCC
Q 005361           98 ALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFT  176 (700)
Q Consensus        98 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  176 (700)
                      .+....+++.++  ...+.+|++|+++++.++..  +.+..++ |++|++++|++++..+  ++++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccc
Confidence            455555665544  35678999999999999854  3466777 9999999999996543  999999999999999998


Q ss_pred             CCCCccccCCCCccEEEeeecCCCCcC-----------------------------------------------------
Q 005361          177 GSIPPDIRKLINLQKLILSSNSFTGEL-----------------------------------------------------  203 (700)
Q Consensus       177 ~~~p~~~~~l~~L~~L~L~~n~l~~~~-----------------------------------------------------  203 (700)
                      +..  .+..+++|+.|+++++.+++..                                                     
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER  179 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE
T ss_pred             ccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccc
Confidence            543  4889999999999887776311                                                     


Q ss_pred             ----------chhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361          204 ----------PAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE  273 (700)
Q Consensus       204 ----------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  273 (700)
                                ...+..+++++.+++++|.+++..+  +..+++|+.|++++|.++. + ..+..+++|+.|++++|.+..
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~  255 (384)
T d2omza2         180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN  255 (384)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC
Confidence                      1234456778888888888876544  4556788889998888874 3 357788889999988877654


Q ss_pred             CcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc
Q 005361          274 SAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN  352 (700)
Q Consensus       274 ~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~  352 (700)
                      .  +.+.. ++|+.|++++|.+++..+  +..++.++.++++.|++++.  ..+..+++++.|++++|++++..+-.-++
T Consensus       256 ~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~l~~l~  329 (384)
T d2omza2         256 L--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLT  329 (384)
T ss_dssp             C--GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGGGGGCT
T ss_pred             C--CcccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcccccCC
Confidence            3  33444 789999999998885433  66788889999999988853  35788999999999999999765555677


Q ss_pred             CCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcc
Q 005361          353 SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH  396 (700)
Q Consensus       353 ~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~  396 (700)
                      +++.|++++|++++ +| .+.    ...-++++....|.+....
T Consensus       330 ~L~~L~L~~n~l~~-l~-~l~----~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         330 KLQRLFFANNKVSD-VS-SLA----NLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             TCCEEECCSSCCCC-CG-GGG----GCTTCCEEECCSSCCCBCG
T ss_pred             CCCEEECCCCCCCC-Ch-hHc----CCCCCCEEECCCCcCCCCh
Confidence            99999999999875 33 231    1234667777777776554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.2e-16  Score=153.19  Aligned_cols=183  Identities=16%  Similarity=0.266  Sum_probs=81.4

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      |+.|++.+|.++. + +.+..+++|++|++++|.+.+..  .+..+++|+.+++++|.++. + ..+..+++|+.+++++
T Consensus        43 L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          43 ITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTT
T ss_pred             cCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccccccccc
Confidence            4444444444442 2 12445555555555555554322  24455555555555554442 2 1244455555555555


Q ss_pred             CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361          221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD  300 (700)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~  300 (700)
                      +...+..  .+...+.++.+.++.+.+....  .+...++|+.|++                       ++|.++...  
T Consensus       117 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l-----------------------~~n~~~~~~--  167 (227)
T d1h6ua2         117 TQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSI-----------------------GNAQVSDLT--  167 (227)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEEC-----------------------CSSCCCCCG--
T ss_pred             ccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccc-----------------------cccccccch--
Confidence            4443221  2333444555555544444221  1333444444444                       444443211  


Q ss_pred             hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeee
Q 005361          301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDIS  360 (700)
Q Consensus       301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls  360 (700)
                      .+..+++|+.|+|++|++++ ++ .+..+++|++|+|++|++++..|-.-+++|+.|+++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            14445555555555555553 22 245555555555555555532222223445555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.1e-16  Score=152.22  Aligned_cols=188  Identities=20%  Similarity=0.269  Sum_probs=119.6

Q ss_pred             EEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcC
Q 005361          144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF  223 (700)
Q Consensus       144 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  223 (700)
                      ++++.+.+++..  .+..+.+|++|++.+|.++. + ..+..+++|++|++++|.+++..+  +..+++|+.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344555555332  23445667777777776663 3 246666666666666666664322  55666666666666655


Q ss_pred             CCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhc
Q 005361          224 SGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIG  303 (700)
Q Consensus       224 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~  303 (700)
                      +. ++ .+..+++|+.++++++...+..  .+...                       ..+..+.++++.+....  .+.
T Consensus        98 ~~-i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~-----------------------~~~~~l~~~~~~~~~~~--~~~  148 (227)
T d1h6ua2          98 KN-VS-AIAGLQSIKTLDLTSTQITDVT--PLAGL-----------------------SNLQVLYLDLNQITNIS--PLA  148 (227)
T ss_dssp             SC-CG-GGTTCTTCCEEECTTSCCCCCG--GGTTC-----------------------TTCCEEECCSSCCCCCG--GGG
T ss_pred             cc-cc-cccccccccccccccccccccc--hhccc-----------------------cchhhhhchhhhhchhh--hhc
Confidence            52 22 3455555666665555544221  12222                       45556666666665332  356


Q ss_pred             CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccC
Q 005361          304 DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWES  368 (700)
Q Consensus       304 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~  368 (700)
                      .+++|+.|++++|.+.+..  .+.++++|+.|+|++|++++..+-.-+++|+.|+|++|+++...
T Consensus       149 ~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred             cccccccccccccccccch--hhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCc
Confidence            7899999999999998543  38899999999999999985433334578999999999988643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=158.33  Aligned_cols=224  Identities=17%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             eeeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCC
Q 005361           83 VTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI  162 (700)
Q Consensus        83 v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l  162 (700)
                      ..|.|.+     +.++.++.+++ .+|..+.  +++++|+|++|.++...+..|                       .++
T Consensus         4 ~~C~C~~-----~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f-----------------------~~l   52 (242)
T d1xwdc1           4 RICHCSN-----RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAF-----------------------SGF   52 (242)
T ss_dssp             SSEEECS-----SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTT-----------------------TTC
T ss_pred             CcCCCcC-----CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHh-----------------------hcc
Confidence            4466542     35666666666 4444331  356666666666654433344                       444


Q ss_pred             CCCCEEEccCCcCCCCC-CccccCCCCccEEEeee-cCCCCcCchhhhCCCCCcEEEeecCcCCCCCh-hhhcCCCcccE
Q 005361          163 TTLKNLSIEGNLFTGSI-PPDIRKLINLQKLILSS-NSFTGELPAELTKLTNLNDLRISDNNFSGKIP-EFIGKWKKIQK  239 (700)
Q Consensus       163 ~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~  239 (700)
                      ++|++|+|++|.+...+ +..|.+++++++|.+.. |.+....+..|.++++|++|++++|.+....+ ..+..+..+..
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~  132 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  132 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE
T ss_pred             chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccc
Confidence            44444444444443322 22344444555444432 33443334444455555555555554432211 11222333333


Q ss_pred             EEccCCCCCCCchhhhhcCC-CCCEEEcCCCCCCCCcccccCccCccEE-EcccCCCCCCCchhhcCCCCCCEEeccCCC
Q 005361          240 LHIQGSSLEGPIPASISALT-SLTDLRISDLKGSESAFPKLDKMNLKTL-ILTKCLIHGEIPDYIGDMTKLKNIDLSFNN  317 (700)
Q Consensus       240 L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  317 (700)
                      +...++.+....+..|..++ .++.|++.+|.+.......+...+++.+ ++++|+++...+..|.++++|+.|+|++|+
T Consensus       133 ~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            33444433322222222221 2333333332222211111111222222 334455554334445555566666666665


Q ss_pred             CCCCChhhHhcCCCCCEEEc
Q 005361          318 LTGGIPTTFEKLAKTNFMYL  337 (700)
Q Consensus       318 l~~~~p~~~~~l~~L~~L~L  337 (700)
                      |+...+..|.++++|+.+++
T Consensus       213 l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         213 IHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCCSSSCTTCCEEESSSE
T ss_pred             CCccCHHHHcCCcccccCcC
Confidence            55443444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.9e-16  Score=155.35  Aligned_cols=213  Identities=15%  Similarity=0.116  Sum_probs=162.0

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcC-chhhhCCCCCcEEEee
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL-PAELTKLTNLNDLRIS  219 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~  219 (700)
                      .+.++.++..++ .+|..+.  +++++|+|++|+++...+..|.++++|++|++++|.+...+ +..|..+++++++.+.
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            456777777777 5665543  47999999999998655667999999999999999987644 4578899999999986


Q ss_pred             c-CcCCCCChhhhcCCCcccEEEccCCCCCCCchh-hhhcCCCCCEEEcCCCCCCCCcccccCc--cCccEEEcccCCCC
Q 005361          220 D-NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPA-SISALTSLTDLRISDLKGSESAFPKLDK--MNLKTLILTKCLIH  295 (700)
Q Consensus       220 ~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~--~~L~~L~L~~n~l~  295 (700)
                      . |.+....+..+..+++|+.|++++|.+....+. .+..+..+..+...++.+.......+..  ..++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 678777788899999999999999998754332 2344555655566665555544444443  58999999999999


Q ss_pred             CCCchhhcCCCCCCE-EeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeee
Q 005361          296 GEIPDYIGDMTKLKN-IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVD  358 (700)
Q Consensus       296 ~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~  358 (700)
                      ...+..+. .++++. +++++|+|+...+..|.++++|+.|+|++|+|+ .+|...+.++..|.
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  228 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccc
Confidence            65555554 455544 567889999766778999999999999999998 77777676666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.8e-16  Score=147.64  Aligned_cols=163  Identities=23%  Similarity=0.325  Sum_probs=86.7

Q ss_pred             CCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEc
Q 005361          163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI  242 (700)
Q Consensus       163 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  242 (700)
                      .+|++|++++|.+... + .+..+++|++|++++|.+++. + .+..+++|+.|++++|+++. ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            3455555555554422 1 244455555555555555432 2 23455555555555555542 22 2455555555555


Q ss_pred             cCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCC
Q 005361          243 QGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGG  321 (700)
Q Consensus       243 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  321 (700)
                      ++|.+.. + ..+..+++|+.+++++|.+...  +.... ++|+.+++++|++++. + .+..+++|+.|+|++|+|+. 
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-
T ss_pred             ccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-
Confidence            5555442 1 2345555555555555443321  11222 4566666666766643 2 26677778888888887773 


Q ss_pred             ChhhHhcCCCCCEEEccC
Q 005361          322 IPTTFEKLAKTNFMYLTG  339 (700)
Q Consensus       322 ~p~~~~~l~~L~~L~L~~  339 (700)
                      ++ .+.++++|+.|+|++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            44 477777788777754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=143.29  Aligned_cols=160  Identities=21%  Similarity=0.332  Sum_probs=84.3

Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEE
Q 005361          162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLH  241 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  241 (700)
                      +++|++|++++|.+.. + ..+..+++|++|++++|.+++..+  +.++++|++|+++.|.+.. ++ .+..+++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccc
Confidence            4455555555555542 2 234455555555555555553221  4555555555555555542 22 245555555555


Q ss_pred             ccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361          242 IQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG  320 (700)
Q Consensus       242 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  320 (700)
                      +++|.+...  ..+..+++|+.|++++|.+..  ++.+.. ++|+.|++.+|++++. + .+..+++|+.|+|++|++++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence            555555432  124455555555555544322  222333 4555666666666643 2 26677778888888887774


Q ss_pred             CChhhHhcCCCCCEE
Q 005361          321 GIPTTFEKLAKTNFM  335 (700)
Q Consensus       321 ~~p~~~~~l~~L~~L  335 (700)
                       ++ .+..+++|+.|
T Consensus       187 -i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 -IS-VLAKLTNLESL  199 (199)
T ss_dssp             -CG-GGGGCTTCSEE
T ss_pred             -Cc-cccCCCCCCcC
Confidence             33 46677777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.7e-16  Score=149.71  Aligned_cols=171  Identities=18%  Similarity=0.237  Sum_probs=83.4

Q ss_pred             EEEccCCcCCCCCCccccCCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCC
Q 005361          167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS  245 (700)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  245 (700)
                      .++.++++++ .+|..+.  +++++|+|++|.|+.. .+..|..+++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3444444444 3333321  3444555555554432 2334445555555555555555444555555555555555555


Q ss_pred             CCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhh
Q 005361          246 SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT  325 (700)
Q Consensus       246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  325 (700)
                      +++...+..|.++++|+.|+                       |++|+|++..+..|..+++|++|+|++|.+.......
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~-----------------------L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~  145 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLN-----------------------LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEE-----------------------CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             cccccCHHHHhCCCcccccc-----------------------cCCccccccCHHHhcCCcccccccccccccccccchH
Confidence            55543344444444333333                       3334444455555666666777777777666432211


Q ss_pred             HhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccc
Q 005361          326 FEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT  365 (700)
Q Consensus       326 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~  365 (700)
                       .-...++.+.+..|.++...|..+ ..++.++|+.|.|.
T Consensus       146 -~~~~~l~~~~l~~~~~~c~~p~~l-~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         146 -WFAEWLRKKSLNGGAARCGAPSKV-RDVQIKDLPHSEFK  183 (192)
T ss_dssp             -HHHHHHHHHCCSGGGCBBCSSTTT-TTSBGGGSCTTTCC
T ss_pred             -HHhhhhhhhcccCCCeEeCCChhh-cCCEeeecCHhhCc
Confidence             111234455566666665555443 33455566666443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.4e-16  Score=150.16  Aligned_cols=129  Identities=19%  Similarity=0.259  Sum_probs=80.4

Q ss_pred             CEEECcCCCCCCCcccccccccccEEEccCCCCCC-CCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeec
Q 005361          119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSG-PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN  197 (700)
Q Consensus       119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  197 (700)
                      ++++.+++.++.+ |..+. ..+++|+|++|.|++ ..+..|.++++|++|+|++|.+....+..|..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~i-P~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCcc-CCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3567777777643 32221 126667777776654 33445566666666777666666666666666666666666666


Q ss_pred             CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361          198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG  249 (700)
Q Consensus       198 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  249 (700)
                      +++...+..|.++++|++|+|++|+++...+..|..+++|++|+|++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            6665555666666666666666666665556666666666666666666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=1.5e-14  Score=149.53  Aligned_cols=250  Identities=21%  Similarity=0.241  Sum_probs=143.7

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG  172 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  172 (700)
                      ++++|+|+++.++. +|+   .+++|++|+|++|+++. +|..+.  .|+.|++++|.++. ++. +  .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~~-lp~~~~--~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPELPQ--SLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCCCT--TCCEEECCSSCCSC-CCS-C--CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCcc-cccchh--hhhhhhhhhcccch-hhh-h--ccccccccccc
Confidence            57788999888874 554   25788999999998884 454322  38888888888873 332 1  13688999999


Q ss_pred             CcCCCCCCccccCCCCccEEEeeecCCCCcCc------------------hhhhCCCCCcEEEeecCcCCCCCh------
Q 005361          173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELP------------------AELTKLTNLNDLRISDNNFSGKIP------  228 (700)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~------  228 (700)
                      |.+. .+|. ++.+++|+.|+++++.+.....                  ..+..++.++.|++..|.......      
T Consensus       108 n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         108 NQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             cccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            9887 4553 5778889999988887763211                  123344555566655554432110      


Q ss_pred             ------------hhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCC
Q 005361          229 ------------EFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG  296 (700)
Q Consensus       229 ------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~  296 (700)
                                  ..+..++.|+.+++++|.... .+   ....++..+.+..+.+.....  . ...+..+++..+.+.+
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLPE--L-PQSLTFLDVSENIFSG  258 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCCC--C-CTTCCEEECCSSCCSE
T ss_pred             ccccccccccccccccccccccccccccccccc-cc---ccccccccccccccccccccc--c-cccccccccccccccc
Confidence                        112233444444444443331 11   112233333333322211100  0 0122333333322221


Q ss_pred             ----------------CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeee
Q 005361          297 ----------------EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDIS  360 (700)
Q Consensus       297 ----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls  360 (700)
                                      .++.....+++|++|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|. ...+++.|+++
T Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~-~~~~L~~L~L~  332 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE-LPQNLKQLHVE  332 (353)
T ss_dssp             ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC-CCTTCCEEECC
T ss_pred             cccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc-ccCCCCEEECc
Confidence                            11112233578889999999888 4553   4678888899999888 6765 34578888999


Q ss_pred             cCcccccCC
Q 005361          361 LNNFTWESS  369 (700)
Q Consensus       361 ~N~l~~~~p  369 (700)
                      +|+++ .+|
T Consensus       333 ~N~L~-~lp  340 (353)
T d1jl5a_         333 YNPLR-EFP  340 (353)
T ss_dssp             SSCCS-SCC
T ss_pred             CCcCC-CCC
Confidence            88876 344

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.7e-15  Score=141.10  Aligned_cols=162  Identities=24%  Similarity=0.312  Sum_probs=119.6

Q ss_pred             cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      .++.|+++++.++...  .+..+++|++|+|++|.+++..+  +..++ |++|++++|++++ ++ .+.++++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-cccccccccccccc
Confidence            5778888888877543  37788888888888888886443  45666 8888888888874 34 47778888888888


Q ss_pred             CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361          172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI  251 (700)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  251 (700)
                      +|.+..  ...+..+++|+.+++++|.++.  +..+..+++|+.+++++|++++. + .+.++++|+.|+|++|.++. +
T Consensus       121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l  193 (210)
T d1h6ta2         121 HNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-L  193 (210)
T ss_dssp             TSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-C
T ss_pred             cccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-C
Confidence            887763  2457778888888888888763  23466778888888888888743 3 27778888888888888874 4


Q ss_pred             hhhhhcCCCCCEEEcCC
Q 005361          252 PASISALTSLTDLRISD  268 (700)
Q Consensus       252 ~~~~~~l~~L~~L~l~~  268 (700)
                      + .+.++++|+.|+|++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            4 477888888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.1e-14  Score=137.71  Aligned_cols=159  Identities=26%  Similarity=0.403  Sum_probs=112.9

Q ss_pred             CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361           92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI  170 (700)
Q Consensus        92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  170 (700)
                      .+++.|+++++.++..  +.+..+++|++|+|++|.+++..+  +..++ |++|++++|.+.. ++ .+.++++|++|++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccc
Confidence            3577888888877643  246778888888888888876543  66666 8888888887763 33 3777888888888


Q ss_pred             cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361          171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP  250 (700)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  250 (700)
                      ++|.+...  ..+..+++|+.|++++|.+.. + +.+..+++|+.|++.+|++++. + .++++++|+.|++++|+++. 
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-
Confidence            87777632  346777888888888887763 3 3477778888888888877743 2 36777888888888887774 


Q ss_pred             chhhhhcCCCCCEE
Q 005361          251 IPASISALTSLTDL  264 (700)
Q Consensus       251 ~~~~~~~l~~L~~L  264 (700)
                      ++ .+..+++|+.|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            33 46777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.1e-16  Score=154.05  Aligned_cols=252  Identities=17%  Similarity=0.253  Sum_probs=123.9

Q ss_pred             EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCC-CchhcCCCCCCCEEEccCCc
Q 005361           96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGP-FPKVLTNITTLKNLSIEGNL  174 (700)
Q Consensus        96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~  174 (700)
                      .|||+++.+.......+.. ..+..+.++...+.......+....|++|+++++.++.. +...+..+++|++|+|+++.
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~   82 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR   82 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC
Confidence            5666666553221111111 234455555554443333333344466677766665432 33345566666666666666


Q ss_pred             CCCCCCccccCCCCccEEEeeec-CCCCc-CchhhhCCCCCcEEEeecCc-CCCC-Chhhhc-CCCcccEEEccCCC--C
Q 005361          175 FTGSIPPDIRKLINLQKLILSSN-SFTGE-LPAELTKLTNLNDLRISDNN-FSGK-IPEFIG-KWKKIQKLHIQGSS--L  247 (700)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~-~l~~L~~L~L~~n~--l  247 (700)
                      +++..+..+..+++|++|+++++ .++.. +...+..+++|++|+++++. ++.. +...+. ..++|+.|+++++.  +
T Consensus        83 l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i  162 (284)
T d2astb2          83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL  162 (284)
T ss_dssp             CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred             CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccc
Confidence            65444455556666666666653 33311 11223345666666665542 2211 111121 22455555555431  2


Q ss_pred             CCC-chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccC-CCCCCCchhhcCCCCCCEEeccCC-CCCCCChh
Q 005361          248 EGP-IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKC-LIHGEIPDYIGDMTKLKNIDLSFN-NLTGGIPT  324 (700)
Q Consensus       248 ~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~  324 (700)
                      +.. +.....++++                       |++|+|++| .+++.....+..+++|++|+|++| .+++....
T Consensus       163 ~~~~l~~l~~~~~~-----------------------L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~  219 (284)
T d2astb2         163 QKSDLSTLVRRCPN-----------------------LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL  219 (284)
T ss_dssp             CHHHHHHHHHHCTT-----------------------CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred             cccccccccccccc-----------------------ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH
Confidence            211 1122233444                       455555443 344444455666677777777774 56554455


Q ss_pred             hHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCC
Q 005361          325 TFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI  372 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~  372 (700)
                      .+..+++|+.|+++++ ++...-..+...+..|++..++++...++..
T Consensus       220 ~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~~~~~~~  266 (284)
T d2astb2         220 ELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTI  266 (284)
T ss_dssp             GGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             HHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCCCCCCcc
Confidence            5666777777777766 3322222233345556666666665544433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=4.3e-13  Score=138.39  Aligned_cols=241  Identities=24%  Similarity=0.291  Sum_probs=165.6

Q ss_pred             cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361           91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS  169 (700)
Q Consensus        91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  169 (700)
                      .++++.|+|++|+++ .+|..   +.+|+.|++++|.++.. +.   ..+ |++|++++|.+. .+|. ++.+++|++|+
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~---lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID  126 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh---hccccccccccccccc-cccc-hhhhccceeec
Confidence            457999999999998 45643   56899999999988743 22   123 999999999998 4554 67899999999


Q ss_pred             ccCCcCCCCCC------------------ccccCCCCccEEEeeecCCCCc------------------CchhhhCCCCC
Q 005361          170 IEGNLFTGSIP------------------PDIRKLINLQKLILSSNSFTGE------------------LPAELTKLTNL  213 (700)
Q Consensus       170 L~~n~l~~~~p------------------~~~~~l~~L~~L~L~~n~l~~~------------------~~~~~~~l~~L  213 (700)
                      +++|.+.....                  ..+..++.++.|+++.|.+...                  ....+..++.|
T Consensus       127 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L  206 (353)
T d1jl5a_         127 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL  206 (353)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             cccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccc
Confidence            99987763221                  2345567788888887766531                  11224567899


Q ss_pred             cEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC---------------CCcccc
Q 005361          214 NDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS---------------ESAFPK  278 (700)
Q Consensus       214 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~---------------~~~~~~  278 (700)
                      +.+++++|.... .+.   ...++..+.+..+.+... +.   ....+..+++..+...               ...+..
T Consensus       207 ~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  278 (353)
T d1jl5a_         207 TTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS  278 (353)
T ss_dssp             CEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE
T ss_pred             cccccccccccc-ccc---cccccccccccccccccc-cc---ccccccccccccccccccccccchhcccccccCcccc
Confidence            999999988763 333   345677888888776632 21   1233333433322111               111112


Q ss_pred             cCc--cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCe
Q 005361          279 LDK--MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKN  356 (700)
Q Consensus       279 l~~--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~  356 (700)
                      +..  ++|++|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+++ .+|. +...++.
T Consensus       279 ~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~-~~~~L~~  348 (353)
T d1jl5a_         279 LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD-IPESVED  348 (353)
T ss_dssp             ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC-CCTTCCE
T ss_pred             ccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc-cccccCe
Confidence            222  68999999999998 4554   3689999999999999 5664   3568999999999998 6775 2345666


Q ss_pred             eee
Q 005361          357 VDI  359 (700)
Q Consensus       357 L~l  359 (700)
                      |.+
T Consensus       349 L~~  351 (353)
T d1jl5a_         349 LRM  351 (353)
T ss_dssp             EEC
T ss_pred             eEC
Confidence            554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-15  Score=163.75  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=82.6

Q ss_pred             cCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCccccc----C-c-cCccEEEcccCCCCCCCch-
Q 005361          232 GKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKL----D-K-MNLKTLILTKCLIHGEIPD-  300 (700)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~-~-~~L~~L~L~~n~l~~~~p~-  300 (700)
                      .....++.|++++|.+...    ....+...+.++.+++++|.+.......+    . . ..|+.+++++|.++..... 
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            3456788888888877642    22345567788888888876643322221    1 1 5678888888877654322 


Q ss_pred             ---hhcCCCCCCEEeccCCCCCCC----ChhhHh-cCCCCCEEEccCCcCCCC----Cchhh--hcCCCeeeeecCcccc
Q 005361          301 ---YIGDMTKLKNIDLSFNNLTGG----IPTTFE-KLAKTNFMYLTGNKLTGP----VPKYI--FNSNKNVDISLNNFTW  366 (700)
Q Consensus       301 ---~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~----ip~~~--~~~l~~L~ls~N~l~~  366 (700)
                         .+...++|++|+|++|+|++.    +...+. ..+.|+.|+|++|.|+..    +...+  .+++++|||++|+++.
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence               234456788888888877632    222232 355688888888887632    22222  2467788888887653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.9e-15  Score=146.33  Aligned_cols=230  Identities=20%  Similarity=0.221  Sum_probs=152.9

Q ss_pred             EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC-ccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361           94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS-FSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE  171 (700)
Q Consensus        94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  171 (700)
                      +..+.+....+..... ......+|++|+|+++.+... +...+...+ |++|+++++.++...+..+..+++|++|+|+
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            3445555444432222 234557899999999988754 344566666 9999999999988888889999999999999


Q ss_pred             CC-cCCCC-CCccccCCCCccEEEeeec-CCCCc-Cchhhh-CCCCCcEEEeecC--cCCCC-ChhhhcCCCcccEEEcc
Q 005361          172 GN-LFTGS-IPPDIRKLINLQKLILSSN-SFTGE-LPAELT-KLTNLNDLRISDN--NFSGK-IPEFIGKWKKIQKLHIQ  243 (700)
Q Consensus       172 ~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~-~l~~L~~L~L~~n--~l~~~-~~~~l~~l~~L~~L~L~  243 (700)
                      ++ .++.. +...+.++++|++|+++++ .++.. +...+. ..++|+.|+++++  .++.. +......+++|++|+++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            96 44411 1122457899999999986 44422 222333 3578999999875  34422 33345678999999999


Q ss_pred             CC-CCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC-C
Q 005361          244 GS-SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG-G  321 (700)
Q Consensus       244 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~  321 (700)
                      +| .+++.....+..+++|++|++++|.                      .+++.....+..+++|+.|+++++ ++. .
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~----------------------~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~  240 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCY----------------------DIIPETLLELGEIPTLKTLQVFGI-VPDGT  240 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCT----------------------TCCGGGGGGGGGCTTCCEEECTTS-SCTTC
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCC----------------------CCChHHHHHHhcCCCCCEEeeeCC-CCHHH
Confidence            86 4666666777788888888777642                      233233334567788888988887 432 3


Q ss_pred             ChhhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361          322 IPTTFEKLAKTNFMYLTGNKLTGPVPKYI  350 (700)
Q Consensus       322 ~p~~~~~l~~L~~L~L~~N~l~~~ip~~~  350 (700)
                      ++.....+|+|+   +..+++++..++.+
T Consensus       241 l~~l~~~lp~L~---i~~~~ls~~~~~~~  266 (284)
T d2astb2         241 LQLLKEALPHLQ---INCSHFTTIARPTI  266 (284)
T ss_dssp             HHHHHHHSTTSE---ESCCCSCCTTCSSC
T ss_pred             HHHHHHhCcccc---ccCccCCCCCCCcc
Confidence            333335566654   46777775555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-13  Score=124.97  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=92.2

Q ss_pred             cCccEEEcccC-CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc--CCCeee
Q 005361          282 MNLKTLILTKC-LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN--SNKNVD  358 (700)
Q Consensus       282 ~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~  358 (700)
                      ++|++|++++| .++...+..|.++++|+.|+|++|+|+...+.+|..+++|+.|+|++|+|+ .+|...+.  .++.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccc
Confidence            45666666555 477677778999999999999999999888899999999999999999998 77777665  577999


Q ss_pred             eecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCc
Q 005361          359 ISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQY  412 (700)
Q Consensus       359 ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~  412 (700)
                      |++|        +|.|+|...|+..|+......+.      ..+..|..|....
T Consensus       110 L~~N--------p~~C~C~~~~l~~~~~~~~~~~~------~~~~~C~~p~~l~  149 (156)
T d2ifga3         110 LSGN--------PLHCSCALRWLQRWEEEGLGGVP------EQKLQCHGQGPLA  149 (156)
T ss_dssp             CCSS--------CCCCCGGGHHHHHHHHTTCSSCG------GGCCCCSSSSCSS
T ss_pred             cCCC--------cccCCchHHHHHHHHHhccCccC------cCCcEECcChHHC
Confidence            9999        56699999999999875533321      3566777765443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.6e-13  Score=115.54  Aligned_cols=118  Identities=19%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             cEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC
Q 005361          142 VELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN  221 (700)
Q Consensus       142 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  221 (700)
                      |+|+|++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++. ++ .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            35666666666 233 3566667777777777776 455566667777777777777763 33 3666777777777777


Q ss_pred             cCCCCC-hhhhcCCCcccEEEccCCCCCC---CchhhhhcCCCCCEE
Q 005361          222 NFSGKI-PEFIGKWKKIQKLHIQGSSLEG---PIPASISALTSLTDL  264 (700)
Q Consensus       222 ~l~~~~-~~~l~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L  264 (700)
                      +++... ...+..+++|+.|++++|.++.   ........+++|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            766432 2456666777777777776643   122334455666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.4e-13  Score=123.42  Aligned_cols=122  Identities=14%  Similarity=0.159  Sum_probs=57.3

Q ss_pred             ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361          141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD  220 (700)
Q Consensus       141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  220 (700)
                      +++|+|++|.|+. ++..+..+++|+.|+|++|.++. + +.|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        20 lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          20 DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             CEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            4444444444432 23333444455555555555442 2 2344455555555555555533333344455555555555


Q ss_pred             CcCCCCCh-hhhcCCCcccEEEccCCCCCCCc---hhhhhcCCCCCEEE
Q 005361          221 NNFSGKIP-EFIGKWKKIQKLHIQGSSLEGPI---PASISALTSLTDLR  265 (700)
Q Consensus       221 n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  265 (700)
                      |+++.... ..+..+++|+.|++++|.++...   +..+..+++|+.|+
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55542211 23455555555555555554221   12355566666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.7e-13  Score=124.52  Aligned_cols=129  Identities=21%  Similarity=0.162  Sum_probs=98.0

Q ss_pred             hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCc
Q 005361          111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINL  189 (700)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  189 (700)
                      .+.+...|++|+|++|.|+.+ +..+..++ |+.|+|++|.++. + +.|..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            356777888888888888765 45556666 8888888888874 3 347888999999999999885555556778999


Q ss_pred             cEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCC---hhhhcCCCcccEEEc
Q 005361          190 QKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKI---PEFIGKWKKIQKLHI  242 (700)
Q Consensus       190 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L  242 (700)
                      +.|++++|.++.... ..+..+++|++|++++|+++...   +..+..+++|+.||-
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999999874322 46788899999999999886332   235777889988873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=6.6e-14  Score=144.60  Aligned_cols=236  Identities=17%  Similarity=0.207  Sum_probs=118.1

Q ss_pred             CchhhcCCCCCCEEECcCCCCCCCc----cccccccc-ccEEEccCCCCCCC----------CchhcCCCCCCCEEEccC
Q 005361          108 LPTELSKLRYLKQLDLSRNCLTGSF----SPQWASLQ-LVELSVMGNRLSGP----------FPKVLTNITTLKNLSIEG  172 (700)
Q Consensus       108 ~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~-L~~L~L~~n~l~~~----------~p~~~~~l~~L~~L~L~~  172 (700)
                      +...+.+...|+.|+|++|.+...-    ...+...+ |+.|+++++.....          +...+...++|++|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            3445666778888888887765322    22333444 77777776644311          122345567777777777


Q ss_pred             CcCCCCC----CccccCCCCccEEEeeecCCCCcCch-------------hhhCCCCCcEEEeecCcCCCC----Chhhh
Q 005361          173 NLFTGSI----PPDIRKLINLQKLILSSNSFTGELPA-------------ELTKLTNLNDLRISDNNFSGK----IPEFI  231 (700)
Q Consensus       173 n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~----~~~~l  231 (700)
                      |.+....    ...+..+++|+.|++++|.+......             .....+.|+.|.+++|.++..    +...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            7766432    22234556777777777765421000             113455666666666665522    12233


Q ss_pred             cCCCcccEEEccCCCCCCC-----chhhhhcCCCCCEEEcCCCCCCCCccc----ccCc-cCccEEEcccCCCCCCCc--
Q 005361          232 GKWKKIQKLHIQGSSLEGP-----IPASISALTSLTDLRISDLKGSESAFP----KLDK-MNLKTLILTKCLIHGEIP--  299 (700)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~-~~L~~L~L~~n~l~~~~p--  299 (700)
                      ...+.|+.|+|++|.+...     +...+..+++|+.|++++|.+......    .+.. ++|++|+|++|.|++.-.  
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            4455666666666665421     122244455566666655543322111    1222 455555555555543211  


Q ss_pred             --hhhcC--CCCCCEEeccCCCCCCC----ChhhHh-cCCCCCEEEccCCcCC
Q 005361          300 --DYIGD--MTKLKNIDLSFNNLTGG----IPTTFE-KLAKTNFMYLTGNKLT  343 (700)
Q Consensus       300 --~~~~~--l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~  343 (700)
                        ..+..  .+.|++|+|++|+|+..    +...+. +++.|+.|+|++|++.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence              11111  23455555555555421    111221 3445555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-14  Score=156.31  Aligned_cols=274  Identities=16%  Similarity=0.181  Sum_probs=184.0

Q ss_pred             cEEEEEecCCCCCCcC-chhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCCCCCCC----CchhcC-C
Q 005361           93 HVVTIALKAQNLTGTL-PTELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGNRLSGP----FPKVLT-N  161 (700)
Q Consensus        93 ~v~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n~l~~~----~p~~~~-~  161 (700)
                      +++.|+++++++++.. ...+..+++|++|+|++|.++..    +...+...+ |++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6899999999998642 34467789999999999998742    344556666 99999999998632    223333 3


Q ss_pred             CCCCCEEEccCCcCCCC----CCccccCCCCccEEEeeecCCCCcCc---------------------------------
Q 005361          162 ITTLKNLSIEGNLFTGS----IPPDIRKLINLQKLILSSNSFTGELP---------------------------------  204 (700)
Q Consensus       162 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~---------------------------------  204 (700)
                      ..+|++|+|++|+++..    ++..+..+++|++|++++|.+.....                                 
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            45899999999998743    34567788999999999998752100                                 


Q ss_pred             hhhhCCCCCcEEEeecCcCCC-----------------------------C----ChhhhcCCCcccEEEccCCCCCC--
Q 005361          205 AELTKLTNLNDLRISDNNFSG-----------------------------K----IPEFIGKWKKIQKLHIQGSSLEG--  249 (700)
Q Consensus       205 ~~~~~l~~L~~L~L~~n~l~~-----------------------------~----~~~~l~~l~~L~~L~L~~n~l~~--  249 (700)
                      ..+.....++.++++.+....                             .    ....+...+.++.+++..|.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            112234556666665543310                             0    00123344667777777776532  


Q ss_pred             ---CchhhhhcCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCCCCchh----h-cCCCCCCEEeccCC
Q 005361          250 ---PIPASISALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHGEIPDY----I-GDMTKLKNIDLSFN  316 (700)
Q Consensus       250 ---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~p~~----~-~~l~~L~~L~Ls~N  316 (700)
                         ...........|+.|++++|.+.......    +.. ..++.+++++|.++......    + .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               12333455678999999998765543322    233 78999999999986422221    1 23468999999999


Q ss_pred             CCCCCChh----hHhcCCCCCEEEccCCcCCCC----Cchhhh---cCCCeeeeecCcccc
Q 005361          317 NLTGGIPT----TFEKLAKTNFMYLTGNKLTGP----VPKYIF---NSNKNVDISLNNFTW  366 (700)
Q Consensus       317 ~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~----ip~~~~---~~l~~L~ls~N~l~~  366 (700)
                      .++.....    .+...++|++|+|++|++++.    ++..+.   ..++.|+|++|.++.
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            98854333    345667899999999998743    333332   248899999998874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.5e-12  Score=112.28  Aligned_cols=117  Identities=21%  Similarity=0.296  Sum_probs=64.2

Q ss_pred             CEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeec
Q 005361          119 KQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN  197 (700)
Q Consensus       119 ~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  197 (700)
                      |.|+|++|+++.. + .+..+. |++|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            3455555555532 2 244444 556666666655 344456666666666666666663 33 3666666666666666


Q ss_pred             CCCCcC-chhhhCCCCCcEEEeecCcCCCC---ChhhhcCCCcccEE
Q 005361          198 SFTGEL-PAELTKLTNLNDLRISDNNFSGK---IPEFIGKWKKIQKL  240 (700)
Q Consensus       198 ~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L  240 (700)
                      +++... ...+..+++|+.|++++|+++..   .......+|+|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            665332 23466666677777766666421   12233345555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=2.6e-13  Score=139.99  Aligned_cols=231  Identities=15%  Similarity=0.121  Sum_probs=166.1

Q ss_pred             cccccc-ccEEEccCCCCCCC----CchhcCCCCCCCEEEccCCcCCCCC----------CccccCCCCccEEEeeecCC
Q 005361          135 QWASLQ-LVELSVMGNRLSGP----FPKVLTNITTLKNLSIEGNLFTGSI----------PPDIRKLINLQKLILSSNSF  199 (700)
Q Consensus       135 ~~~~l~-L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----------p~~~~~l~~L~~L~L~~n~l  199 (700)
                      .+.... |+.|+|++|.+...    +...+...++|+.|+++++......          ...+..+++|+.|+|++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            344445 99999999988632    3445678899999999988654221          12345678999999999998


Q ss_pred             CCc----CchhhhCCCCCcEEEeecCcCCCCChh-------------hhcCCCcccEEEccCCCCCCC----chhhhhcC
Q 005361          200 TGE----LPAELTKLTNLNDLRISDNNFSGKIPE-------------FIGKWKKIQKLHIQGSSLEGP----IPASISAL  258 (700)
Q Consensus       200 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l  258 (700)
                      ...    +...+...++|++|++++|.+...-..             .....+.|+.|++++|.+...    +...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            754    334556789999999999987521111             123567899999999988743    33446778


Q ss_pred             CCCCEEEcCCCCCCCCcc-----cccCc-cCccEEEcccCCCCCC----CchhhcCCCCCCEEeccCCCCCCCChh----
Q 005361          259 TSLTDLRISDLKGSESAF-----PKLDK-MNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDLSFNNLTGGIPT----  324 (700)
Q Consensus       259 ~~L~~L~l~~n~~~~~~~-----~~l~~-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----  324 (700)
                      +.|+.|++++|.+....+     ..+.. ++|+.|+|++|.++..    +...+..+++|++|+|++|.|++....    
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            999999999988765321     12444 7899999999998642    345567889999999999999854332    


Q ss_pred             hHhc--CCCCCEEEccCCcCCCC----Cchhh---hcCCCeeeeecCccc
Q 005361          325 TFEK--LAKTNFMYLTGNKLTGP----VPKYI---FNSNKNVDISLNNFT  365 (700)
Q Consensus       325 ~~~~--l~~L~~L~L~~N~l~~~----ip~~~---~~~l~~L~ls~N~l~  365 (700)
                      .+..  .+.|+.|++++|+++..    +...+   .+.++.|+|++|.+.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3333  36799999999998742    22222   236889999999775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=8e-13  Score=124.28  Aligned_cols=112  Identities=29%  Similarity=0.347  Sum_probs=55.7

Q ss_pred             cCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361          107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK  185 (700)
Q Consensus       107 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  185 (700)
                      .++..+..|++|++|+|++|.++.. + .+..++ |++|+|++|.++ .+|..+..+++|++|++++|+++. + ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence            3455677777777777777776643 2 244444 555555555554 233333333445555555555542 1 22444


Q ss_pred             CCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcC
Q 005361          186 LINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNF  223 (700)
Q Consensus       186 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  223 (700)
                      +++|+.|++++|.++.... ..+..+++|+.|+|++|++
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            4455555555555442211 2344444555555544443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=6.1e-13  Score=125.13  Aligned_cols=130  Identities=22%  Similarity=0.292  Sum_probs=100.1

Q ss_pred             ccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCC
Q 005361          132 FSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL  210 (700)
Q Consensus       132 ~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  210 (700)
                      ++..+..++ |++|+|++|.|+. ++ .+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.++. + +.+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence            455677777 9999999999884 33 4788899999999999987 556555666789999999999884 3 457788


Q ss_pred             CCCcEEEeecCcCCCCCh-hhhcCCCcccEEEccCCCCCCCchh----------hhhcCCCCCEEEc
Q 005361          211 TNLNDLRISDNNFSGKIP-EFIGKWKKIQKLHIQGSSLEGPIPA----------SISALTSLTDLRI  266 (700)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l  266 (700)
                      ++|+.|++++|+++.... ..+..+++|+.|+|++|++....+.          .+..+++|+.||-
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            999999999999874322 4688899999999999976532211          2667889998874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.2e-10  Score=102.77  Aligned_cols=104  Identities=19%  Similarity=0.175  Sum_probs=64.3

Q ss_pred             EEEccCCCCCCCCchhcCCCCCCCEEEccCC-cCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC
Q 005361          143 ELSVMGNRLSGPFPKVLTNITTLKNLSIEGN-LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN  221 (700)
Q Consensus       143 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  221 (700)
                      .++.+++.+. ..|..+..+++|++|+|++| .++...+..|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3455555554 34555666667777777554 355444456666777777777777776655666777777777777777


Q ss_pred             cCCCCChhhhcCCCcccEEEccCCCCC
Q 005361          222 NFSGKIPEFIGKWKKIQKLHIQGSSLE  248 (700)
Q Consensus       222 ~l~~~~~~~l~~l~~L~~L~L~~n~l~  248 (700)
                      +++...+..+.. .+|+.|+|++|.+.
T Consensus        91 ~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCcccChhhhcc-ccccccccCCCccc
Confidence            776444444433 35677777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=6.8e-08  Score=86.68  Aligned_cols=65  Identities=28%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CCCCCCCEEEccCCcCCCCC--CccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC
Q 005361          160 TNITTLKNLSIEGNLFTGSI--PPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS  224 (700)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  224 (700)
                      ..+++|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+....+|+.|++++|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34555666666666655321  122344555555555555555322222223334555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.8e-08  Score=86.67  Aligned_cols=85  Identities=24%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             ccccCCCCccEEEeeecCCCCc--CchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch------
Q 005361          181 PDIRKLINLQKLILSSNSFTGE--LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP------  252 (700)
Q Consensus       181 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------  252 (700)
                      ..+..+++|++|+|++|+++..  ++..+..+++|+.|+|++|.++...+-......+|+.|++++|.+.....      
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3445677888888888888743  23456677888888888888875433333344567888888887765432      


Q ss_pred             -hhhhcCCCCCEEE
Q 005361          253 -ASISALTSLTDLR  265 (700)
Q Consensus       253 -~~~~~l~~L~~L~  265 (700)
                       ..+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2245667777764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.31  E-value=9.8e-05  Score=65.68  Aligned_cols=59  Identities=7%  Similarity=-0.053  Sum_probs=29.9

Q ss_pred             CccEEEcccCCCCCC----CchhhcCCCCCCEEeccCCCCCCC-------ChhhHhcCCCCCEEEccCCc
Q 005361          283 NLKTLILTKCLIHGE----IPDYIGDMTKLKNIDLSFNNLTGG-------IPTTFEKLAKTNFMYLTGNK  341 (700)
Q Consensus       283 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~L~~N~  341 (700)
                      .|++|+|++|.++..    +-..+...++|++|+|++|.+...       +...+...+.|+.|+++.+.
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            444444444544421    112344456677777776655532       22344455666677665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.29  E-value=9.4e-05  Score=65.79  Aligned_cols=110  Identities=12%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             CCCccEEEeeec-CCCCc----CchhhhCCCCCcEEEeecCcCCC----CChhhhcCCCcccEEEccCCCCCCCc----h
Q 005361          186 LINLQKLILSSN-SFTGE----LPAELTKLTNLNDLRISDNNFSG----KIPEFIGKWKKIQKLHIQGSSLEGPI----P  252 (700)
Q Consensus       186 l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~----~  252 (700)
                      .++|+.|+|+++ .++..    +-..+...+.|++|+|++|.+..    .+...+...+.|+.|+|++|.+....    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456666666643 34321    12234445556666666655542    12223333445555555555554311    1


Q ss_pred             hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCC-------CchhhcCCCCCCEEeccCCCC
Q 005361          253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE-------IPDYIGDMTKLKNIDLSFNNL  318 (700)
Q Consensus       253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~Ls~N~l  318 (700)
                      ..+...                       .+|++|+|++|.+...       +...+...++|+.|+++.+..
T Consensus        94 ~aL~~n-----------------------~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVT-----------------------QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTT-----------------------CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhC-----------------------CcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            112222                       4566666666554421       233445567888888877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.38  E-value=0.00082  Score=59.32  Aligned_cols=15  Identities=13%  Similarity=-0.186  Sum_probs=6.9

Q ss_pred             HhcCCCCCEEEccCC
Q 005361          326 FEKLAKTNFMYLTGN  340 (700)
Q Consensus       326 ~~~l~~L~~L~L~~N  340 (700)
                      +...+.|+.|+++.+
T Consensus       128 L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         128 LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHCSSCCEEECCCS
T ss_pred             HHhCCCcCEEeCcCC
Confidence            334444555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.00065  Score=60.02  Aligned_cols=64  Identities=14%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             hCCCCCcEEEeec-CcCCCC----ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCC
Q 005361          208 TKLTNLNDLRISD-NNFSGK----IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKG  271 (700)
Q Consensus       208 ~~l~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~  271 (700)
                      .+.++|++|+|++ +.++..    +-..+...+.|++|+|++|.+...    +...+...++|+.++++++.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3456666666654 334311    112334455566666666655432    112233344455555544433

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.046  Score=53.31  Aligned_cols=21  Identities=29%  Similarity=0.610  Sum_probs=17.4

Q ss_pred             CCCcCCccccCCCcceeEEEe
Q 005361          677 NFDPANKVGEGGFGSVYKVNV  697 (700)
Q Consensus       677 ~Fs~~~~iG~GgfG~VYkg~L  697 (700)
                      +|.-..+||+||||+||||+.
T Consensus        38 ~~~l~~~lG~G~fG~Vy~a~~   58 (325)
T d1rjba_          38 NLEFGKVLGSGAFGKVMNATA   58 (325)
T ss_dssp             GEEEEEEEEECSSEEEEEEEE
T ss_pred             HeEEeeEEeeCCCeEEEEEEE
Confidence            344467999999999999975