Citrus Sinensis ID: 005371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
Protein Sequence
MASAGSLQLSHDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEccccccccEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHEEEccccEcccEEEEcccccEEEEEEEEEEEEEEEEEEEccccEEEEcccHHcEEEEEccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEEEcccccccccccccHHcccccccccccEEEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHEEEEEEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masagslqlshdlglcrnQVFKKQfkfwpqdfrsfnlsgspysqinpipyrsnrirsynalqcspqalklvPGIAIIVFAtwglgplmrQSRNLLLrksdnswkkskthhVMTSYIQPLMLWTGAILICRaldpvvlpteaGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMettdsgdarnmgFQFAGKAVYSAVWVASASLFMELLGFSTqkwltaggLGTVLLTLAGREIFTNFLSSAmihatrpfvLNEWIQTKIEGYEVsgtvehvgwwsptivrgedreavhipnhkfTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRrvfldninpeNQALLILVSCFVktshheeylCVKEAILLDLLRVISHHRARLATPIRTVQkifsdadlenvpfadtiynrgggasnrplllieppyringedktksqtrpsrssgeqdgkttprltpdvkadskvsvssksdskadakipeapnsdtredkngaaahmsdpkvadkvtvkstsksfpktkskvaeisssepkvlgstsdnptkdrkvsdskqpkivgqgnatqnskidnpsisssggsdkagglqeskqesnklpstqppvsrpaleeNIVLGVAlegskrtlpieegmpssqpvVKELTTanrngnvsstaekekkdgqipstrsatsgvsesn
Flexible Loop (DISEMBL)
masagslqlshdlgLCRNQVFKKQFKFWPQDFrsfnlsgspysqINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSdnswkksktHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDReavhipnhkftvNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRarlatpirtvqkifsdadlenvpFADTIynrgggasnrpllLIEPPYringedktksqtrpsrssgeqdgkttprltpdvkadskvsvssksdskadakipeapnsdtredkngaaahmsdpkvadkvtvkstsksfpktkskvaeisssepkvlgstsdnptkdrkvsdskqpkivgqgnatqnskidnpsisssggSDKAGGLQESKQesnklpstqppvsrpaLEENIVLGVALEGSkrtlpieegmpssqpvVKELTTanrngnvsstaekekkdgqipstrsatsgvsesn
Low Complexity Region (SEG)
MASAGSLQLSHDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKavysavwvasasLFMELLGFSTQKWltagglgtvlltlagREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPdvkadskvsvssksdskadakIPEAPNSDTREDKNGAAAHMSDPkvadkvtvkstsksfpktkskvAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
Disordered region (IsUnstruct)
**********HDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEP*****************************************************************************************************************************************************************************************IVLGVA************************************************************
Disordered Region (DISOPRED)
*********SHDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFM***********GFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ*************************************************************************************************************************************************************************************************************************ENIVLGVALEGSKRTLP***************************************************
Disordered Region (DISEMBL)
********LSHDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDN*********VMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGE**********************************************************************************************************************************TQNSKIDNPS******************************SRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNG*****************************
Disordered Region (DISPRO)
***A*SLQLSHDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRIN*****************************************************************************************************************************************************************************RPALEENIVLGVALEGSKRTLPIEE************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASAGSLQLSHDLGLCRNQVFKKQFKFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	699	2.2.26 [Sep-21-2011]
Q56X46	673	Mechanosensitive ion chan	yes	no	0.872	0.906	0.567	0.0
Q8L7W1	678	Mechanosensitive ion chan	no	no	0.795	0.820	0.568	0.0
P0AEB5	343	MscS family inner membran	N/A	no	0.290	0.591	0.303	3e-21
P0AEB6	343	MscS family inner membran	N/A	no	0.290	0.591	0.303	3e-21
O25170	623	Uncharacterized MscS fami	yes	no	0.321	0.361	0.240	3e-12
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.296	0.332	0.245	5e-12
O66994	368	Uncharacterized MscS fami	yes	no	0.361	0.687	0.240	1e-11
Q8VZL4	497	Mechanosensitive ion chan	no	no	0.270	0.380	0.262	1e-09
Q58543	361	Large-conductance mechano	yes	no	0.203	0.393	0.262	1e-05
O07594	371	Uncharacterized MscS fami	yes	no	0.297	0.560	0.197	0.0001

>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/736 (56%), Positives = 495/736 (67%), Gaps = 126/736 (17%)

Query: 1   MASAGSLQLSHDLGLCRNQVFKKQFKFWPQDF---RSFNLSGSPYS-------------- 43
           MA  G+LQLSH LGLCRNQ F       P++    R  ++S  P S              
Sbjct: 1   MALYGTLQLSHSLGLCRNQRFCN-----PENSAMRRRLHISNGPLSLGVPLGQHGFSNIL 55

Query: 44  -------QINPIPYRSNRIR------------------------SYNALQCSPQALKLVP 72
                   I  +P R+   R                        S+  +Q  P   KLVP
Sbjct: 56  LSNYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYKLVP 115

Query: 73  GIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRAL 132
            +A++VF+ WGL P  RQ RN+LL K+DN WKKS T+HVMTSY+QPL+LW GA+ ICRAL
Sbjct: 116 AVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRAL 175

Query: 133 DPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQ 192
           DPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCLSSLIQQ QK F ET++  D RNMGFQ
Sbjct: 176 DPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRNMGFQ 235

Query: 193 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 252
           FAGKA+YSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVL+TLAGREI TNFLSS MIHAT
Sbjct: 236 FAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHAT 295

Query: 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 312
           RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREA+HIPNHKFTVNVVRNL+QK+
Sbjct: 296 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKT 355

Query: 313 HWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILV 372
           HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP VEQQRLHRRVFL+N+ PENQAL IL+
Sbjct: 356 HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILI 415

Query: 373 SCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIY 432
           SCFVKTSHHEEYL VKEAILLDLLRVISHHRARLATPIRT++K++++ D+EN PF +++Y
Sbjct: 416 SCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY 475

Query: 433 NRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVS 492
             GG  S RPL+LIEP Y+INGEDK+KSQ R ++ + EQ+ K          ++ K   +
Sbjct: 476 --GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENK---------GSNPKSKET 524

Query: 493 SKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISS 552
           S  D KA+ K+ E+P SDT                                 +KV E + 
Sbjct: 525 SSPDLKANVKVGESPVSDT---------------------------------NKVPEETV 551

Query: 553 SEPKVLGSTSDNPT-KDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQES 611
           ++P V+ + S  PT KD + S +++PK    G   +++K D    S+S  S         
Sbjct: 552 AKP-VIKAVSKPPTPKDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRS------- 603

Query: 612 KQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGM--PSSQPVVKELTTANRN 669
                             LEENIVLGVALEGSKRTLPIEE +  P  +   KELT A R+
Sbjct: 604 -----------------TLEENIVLGVALEGSKRTLPIEEEIHSPPMETDAKELTGARRS 646

Query: 670 -GNVSSTAEKEKKDGQ 684
            GN    A+KE+KD Q
Sbjct: 647 GGNGPLVADKEQKDSQ 662

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/600 (56%), Positives = 433/600 (72%), Gaps = 44/600 (7%)

Query: 56  RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRK-SDNSWKKSKTHHVMTS 114
           R Y+AL  +P  +KL+P + I+ FATWGL PL+R +R  L  K +D + +KS T +++ S
Sbjct: 100 RVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSSTQYIVVS 159

Query: 115 YIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQ 174
           Y+QPL+LW+GAIL+CR LDP+VLP+ AG+ +KQRLL F RS+STVLAF+ CLSSL+QQ Q
Sbjct: 160 YLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQ 219

Query: 175 KFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 234
           KFFMET +  D RNMGF FAGKAVY+A WVA+ASLFMELLGFSTQKWLTAGGLGTVLLTL
Sbjct: 220 KFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTL 279

Query: 235 AGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 294
           AGREI TNFLSS MIHATRPFVLNEWIQTKI GYEVSGTVE VGWWSPTI+RG+DREAVH
Sbjct: 280 AGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVH 339

Query: 295 IPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHR 354
           IPNH+F+VN+VRNL+QK+HWRIKTHLAISHLDV KIN+IVADMRKVL+KNPQ+EQQ++HR
Sbjct: 340 IPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHR 399

Query: 355 RVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 414
           RVFL++I+PENQAL IL+SCFVKTS  EEYLCVKEA+LLDLL VI HH ARLATPIRTVQ
Sbjct: 400 RVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQ 459

Query: 415 KIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGK 474
           ++ ++A+++   F+D ++N+   A NR  +LIEP Y+IN +D +KS   PS S G++   
Sbjct: 460 RMRNEAEVDTAGFSDIVFNQA--AMNRRYMLIEPSYKINSDDNSKS---PSPSPGQK--- 511

Query: 475 TTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVAD-KVTV 533
            +P  +P  K++ +              + E P+    E +N  +  +S+ K  + K  +
Sbjct: 512 -SP--SPGQKSEER-------------DLQEEPSETKAETENNGSVPVSNAKKENQKAAL 555

Query: 534 KSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKI-- 591
            S S +  K  S              STSD P   +  S+ K+ + VG  +  +  ++  
Sbjct: 556 GSNSNTGTKGSST-------------STSDQPVAQK--SEEKKKESVGDPHKAEKDEVSD 600

Query: 592 DNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEE 651
           D  +I  +  S    G +++  ES          S   LEEN+VLGVAL+GSKRTLPI+E
Sbjct: 601 DEATIEQTLKSKAKQGSEKNNGESKARDGGGSGTS-SLLEENLVLGVALDGSKRTLPIDE 659

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)

Query: 204 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 263
           V    L+ E  G S    LT GG+G + + +AG++I +NF S  M++  RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187

Query: 264 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 323
                E  GTV  +G W  T +   D   +++PN  F+   V N  + ++ RI T + + 
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244

Query: 324 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 382
           + D  K+  IV  +R++L  +P ++Q    R+  L   N   + +L I+V CF KT+   
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300

Query: 383 EYLCVKEAILLDLLRVISHHRARLATPIRTV 413
           E+L  ++ + L ++ ++  H A  A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)

Query: 204 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 263
           V    L+ E  G S    LT GG+G + + +AG++I +NF S  M++  RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187

Query: 264 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 323
                E  GTV  +G W  T +   D   +++PN  F+   V N  + ++ RI T + + 
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244

Query: 324 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 382
           + D  K+  IV  +R++L  +P ++Q    R+  L   N   + +L I+V CF KT+   
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300

Query: 383 EYLCVKEAILLDLLRVISHHRARLATPIRTV 413
           E+L  ++ + L ++ ++  H A  A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331

Escherichia coli O157:H7 (taxid: 83334)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 37/262 (14%)

Query: 178 METTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR 237
           M T  + + R        K VY  +++ +    ++ LGF+    + + G+G + + LA +
Sbjct: 349 MATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVK 408

Query: 238 EIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 297
           ++  NF +S ++     F   +WI       EV GTV  +G    TI R  D   + +PN
Sbjct: 409 DVLANFFASVILLLDNSFSQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPN 463

Query: 298 HKFTVNVVRNLS-QKSHWRIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV-------- 347
            +     +RN S +K   RIK  + +++      +   V D++++L  +P++        
Sbjct: 464 SELAGKPIRNWSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSAL 523

Query: 348 ----EQQRLHRR----------------VFLDNINPENQALLILVSCFVKTSHHEEYLCV 387
               + + + ++                VFLD     + ++ ILV CF KT   EE+L V
Sbjct: 524 QNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEV 581

Query: 388 KEAILLDLLRVISHHRARLATP 409
           KE ++L ++ ++  H    A P
Sbjct: 582 KEDVMLKIMGIVEKHHLSFAFP 603

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 37/244 (15%)

Query: 196 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPF 255
           K VY  +++ +    ++ LGF+    + + G+G + + LA +++  NF +S ++     F
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSF 426

Query: 256 VLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS-QKSHW 314
              +WI       EV GTV  +G    TI R  D   + +PN +     +RN S +K   
Sbjct: 427 SQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPNSELAGKPIRNWSRRKVGR 481

Query: 315 RIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV------------EQQRLHRR------ 355
           RIK  + +++      +   V D++++L  +P++            + + + ++      
Sbjct: 482 RIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDIVSID 541

Query: 356 ----------VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 405
                     VFLD     + ++ ILV CF KT   EE+L VKE ++L ++ ++  H   
Sbjct: 542 DFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLS 599

Query: 406 LATP 409
            A P
Sbjct: 600 FAFP 603

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 134/266 (50%), Gaps = 13/266 (4%)

Query: 152 FVRSLSTVL---AFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS 208
           F+++ S ++   A    L+    +  +FF++      A  +G  F  K + + V V   +
Sbjct: 104 FLKTFSLLILGWAIIRFLNLFHNKIVEFFVKVGGKDFAEEVG-DFILKILKAFVVVIVGA 162

Query: 209 LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 268
             ++  G +    L + GL  + ++LA ++ F N LS  +I   +P  + E ++ K    
Sbjct: 163 SLLQEWGVNIGAILASVGLLGLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK---- 218

Query: 269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDV 327
           +  G+VE +G  S T +R  D+  V IPN     N V N ++++  R++ ++ + +    
Sbjct: 219 DFMGSVEDIGLRS-TKIRTFDKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKR 277

Query: 328 HKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 387
            ++ +I+ ++R++L ++P V +      V+ +N    + +L IL+  +  T+ +EEYL +
Sbjct: 278 EQLENILKEIRELLKEHPGVAKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKI 334

Query: 388 KEAILLDLLRVISHHRARLATPIRTV 413
            E I L ++ ++  + +  A P R+V
Sbjct: 335 IEDINLKIMEIVEKNGSSFAFPSRSV 360

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 9/198 (4%)

Query: 212 ELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 271
           E  G + Q  LT GG+G V    A R+I  N LS   +  +RPF + +     I+   V 
Sbjct: 301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGD----TIKAGSVE 356

Query: 272 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 330
           G V  +G  + +++  E +  V +PN  F+  V+ N S ++ WR I + + +   D+  I
Sbjct: 357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414

Query: 331 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEA 390
             I  +++++L  N +V   +     +L  +      L I   C +     EE    ++ 
Sbjct: 415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTI--GCNLIRMGKEELYNTQQE 472

Query: 391 ILLDLLRVISHHRARLAT 408
           +LL+ +++I  H   L T
Sbjct: 473 VLLEAVKIIKKHGVSLGT 490

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 14/156 (8%)

Query: 232 LTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDRE 291
           + LA + + +N ++  +I   +PF +  WI T   G   SG VE +G  S T +R  D  
Sbjct: 179 VALASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGIVEDIGIRS-TKIRATDNS 233

Query: 292 AVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQ 350
            + +PN K    +++N+  K+ W++ T + +++   V KI      ++ +L ++P VE +
Sbjct: 234 IIVVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRKAEEIIKNILLEHPNVEDE 293

Query: 351 --RLHRRVFLDNINPENQALLILVSCFVKTSHHEEY 384
              ++ + F D       +L I V  ++K S +  Y
Sbjct: 294 PITVYFKEFGD------WSLNIQVVYYIKNSRYNGY 323

Large-conductance mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Selective for cations. Rectifies with voltage.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis (strain 168) GN=yhdY PE=3 SV=1

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 10/218 (4%)

Query: 193 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 252
           F  K +   +   S S+  +   +    ++   GLG +   LA ++  +NF    +I   
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195

Query: 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 312
           +PF + +W++T      V+G+VE + + S T  R      V +PN   ++  + N ++ +
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250

Query: 313 HWRIKTHLAISHLD-VHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLIL 371
             +I   + +S+   +  +   +  +R +L ++  V+ + +   V  D        L   
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTMLLEHEGVDNEII--MVNFDTFADSYYNLFF- 307

Query: 372 VSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATP 409
            + + KT+   E L ++E I   ++ ++     + A P
Sbjct: 308 -NFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYP 344

May play a role in resistance to osmotic downshock.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
255586028	654	conserved hypothetical protein [Ricinus	0.907	0.969	0.743	0.0
224094969	576	predicted protein [Populus trichocarpa]	0.814	0.987	0.707	0.0
356529683	719	PREDICTED: uncharacterized protein LOC10	0.907	0.881	0.614	0.0
255545964	705	conserved hypothetical protein [Ricinus	0.859	0.852	0.645	0.0
356497700	734	PREDICTED: uncharacterized protein LOC10	0.915	0.871	0.596	0.0
225459093	709	PREDICTED: uncharacterized protein LOC10	0.932	0.919	0.578	0.0
449469783	704	PREDICTED: mechanosensitive ion channel	0.861	0.855	0.631	0.0
357485521	735	MscS-Like mechanosensitive ion channel M	0.922	0.877	0.550	0.0
356508025	681	PREDICTED: uncharacterized protein LOC10	0.896	0.920	0.564	0.0
224067078	628	predicted protein [Populus trichocarpa]	0.814	0.906	0.636	0.0

>gi|255586028|ref|XP_002533682.1| conserved hypothetical protein [Ricinus communis] gi|223526417|gb|EEF28698.1| conserved hypothetical protein [Ricinus communis]

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/651 (74%), Positives = 542/651 (83%), Gaps = 17/651 (2%)

Query: 56  RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 115
           RSY+ALQ SP  LKL P + +I+FA WGLGPLMRQSRNLLL K+D++WKKS T++VMTSY
Sbjct: 5   RSYSALQGSPIMLKLAPAVGVIIFAIWGLGPLMRQSRNLLLNKNDSNWKKSGTYYVMTSY 64

Query: 116 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 175
           +QPL+LWTGA LICR LDP++LPTEA +VVKQRLLNFVRSLSTVLAFAYCLSS+IQQ QK
Sbjct: 65  VQPLLLWTGATLICRVLDPLILPTEASQVVKQRLLNFVRSLSTVLAFAYCLSSVIQQVQK 124

Query: 176 FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235
           F +E+ +  D RNMGFQFAGKAVYSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVLLTLA
Sbjct: 125 FLIESNEPSDTRNMGFQFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLA 184

Query: 236 GREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295
           GREIFTNFLSSAMIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREAVHI
Sbjct: 185 GREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHI 244

Query: 296 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 355
           PNHKFTVNVVRNLSQK+HWRIKTHLAISHLDVHKI++IVADMRKVLAKNPQVEQQRLHRR
Sbjct: 245 PNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVHKIHNIVADMRKVLAKNPQVEQQRLHRR 304

Query: 356 VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 415
           VFL+NINPENQALLIL+SCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK
Sbjct: 305 VFLENINPENQALLILISCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 364

Query: 416 IFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKT 475
           I+SDADLEN+PFAD+IYNRGG ASNRPLLLIEP YRING+DK KSQTR  R +G+Q+ K 
Sbjct: 365 IYSDADLENIPFADSIYNRGGSASNRPLLLIEPSYRINGDDKAKSQTRQGRGAGDQENKA 424

Query: 476 TPRLTPDVKADSKVSVSSKSDS------KADAKIPEAPNSDTREDKNGAAAHMSDPKVAD 529
             R TPD KA     V  KSDS      K+DAK+ E PNSD +E   GA   MSDPKV D
Sbjct: 425 ASRSTPDTKA----GVGPKSDSKTKEAPKSDAKVGETPNSDAKEHIKGATTSMSDPKVGD 480

Query: 530 KVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNS 589
           K++VKS+  S PKT S +AE SS E K   S SDN  +++K+ DSKQ K    GN  QN+
Sbjct: 481 KMSVKSSPNSVPKT-SNLAESSSPESKAAASVSDNVIQNKKIPDSKQSKSANPGNGRQNT 539

Query: 590 KIDNPSIS-SSGGSDKAGGLQE---SKQESNKLPSTQPPVSRPALEENIVLGVALEGSKR 645
           ++DNPS+S S  G++KA GLQE   SKQ + +  + Q   SRP+LEENIVLGVALEGSKR
Sbjct: 540 QLDNPSVSLSDAGTEKASGLQESPQSKQGAERKSNGQSSTSRPSLEENIVLGVALEGSKR 599

Query: 646 TLPIEEGMP--SSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSG 694
           TLPIEE M    +Q  VKE+  A RNGN S T E + KDGQIP   +ATSG
Sbjct: 600 TLPIEEDMTPHPTQGEVKEMAAAGRNGNASPTGETDGKDGQIPLPPNATSG 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094969|ref|XP_002310309.1| predicted protein [Populus trichocarpa] gi|222853212|gb|EEE90759.1| predicted protein [Populus trichocarpa]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/609 (70%), Positives = 473/609 (77%), Gaps = 40/609 (6%)

Query: 88  MRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQ 147
           MRQSRNLL  KSDNSWKKS T++VM SYIQPLMLWTGAIL+CRALDPVVLPTEA EVVKQ
Sbjct: 1   MRQSRNLLFHKSDNSWKKSGTYYVMASYIQPLMLWTGAILVCRALDPVVLPTEASEVVKQ 60

Query: 148 RLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASA 207
           RLLNFVRSLSTVLAFAYCLSS+IQQAQKFFM +    DAR MGFQFAG+AVYSAVWVA+ 
Sbjct: 61  RLLNFVRSLSTVLAFAYCLSSMIQQAQKFFMVSPQPSDARTMGFQFAGRAVYSAVWVAAV 120

Query: 208 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEG 267
           SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFV+NEWIQTKIEG
Sbjct: 121 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEG 180

Query: 268 YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDV 327
           YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLD 
Sbjct: 181 YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDA 240

Query: 328 HKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 387
           HKIN+IVADMRKVLAKNPQVEQQRLHRR+FLDNINPENQALLILVSCFVKTSHHEEYLCV
Sbjct: 241 HKINNIVADMRKVLAKNPQVEQQRLHRRIFLDNINPENQALLILVSCFVKTSHHEEYLCV 300

Query: 388 KEAILLDLLRVISHHRARLATPIRTVQKIF---SDADLENVPFADTIYNRGGGASNRPLL 444
           KEAIL+DLLRVISHHRARLATPIRT+QKI+   SD D+ENVPF D+IYN GG AS RPLL
Sbjct: 301 KEAILMDLLRVISHHRARLATPIRTIQKIYSDTSDTDIENVPFTDSIYNHGGVASKRPLL 360

Query: 445 LIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIP 504
           LIEP YRINGEDK KSQ R  R +GE+D  T      + K+DS+   + KSDSK DA   
Sbjct: 361 LIEPSYRINGEDKAKSQARSGRVTGEKDTGT------NTKSDSRAKETPKSDSKGDANSG 414

Query: 505 EAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDN 564
           E PNSD +         +S  +V DK+TVKS   S  KT S   E S    K  GS SDN
Sbjct: 415 ETPNSDAKVHTKSTTVSVSHSRVDDKMTVKSPPTSVLKTNSNATEASGLGSKAAGSVSDN 474

Query: 565 PTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPP 624
             K++  SD+K             SK  +P+               SKQE  K   +QP 
Sbjct: 475 LNKNKTTSDAK-------------SKTTSPA--------------NSKQE--KRSVSQPS 505

Query: 625 VSRPALEENIVLGVALEGSKRTLPIEEGMPS--SQPVVKELTTANRNGNVSSTAEKEKKD 682
            SR ALEENIVLGVALEGSKRTLPI+E + S  + P  KE+  A++NG  S T  K+++D
Sbjct: 506 SSRSALEENIVLGVALEGSKRTLPIDEDIASHPTPPEEKEMAAASQNGTGSPTTVKDRRD 565

Query: 683 GQIPSTRSA 691
           G  P+  S 
Sbjct: 566 GPPPTPTSG 574

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529683|ref|XP_003533418.1| PREDICTED: uncharacterized protein LOC100796304 [Glycine max]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/705 (61%), Positives = 512/705 (72%), Gaps = 71/705 (10%)

Query: 1   MASAGSLQLSHDLGLCRNQVFKKQ-------------------FKFWPQDFRSF------ 35
           MA  GSLQLSH LGLCRN    K                      F  Q+ R F      
Sbjct: 1   MALPGSLQLSHGLGLCRNLDCNKHSRAADHGKLHLYSAGPSYPISFMRQECRGFQHLRHI 60

Query: 36  -----NLSGSPYS--------QINPIPY----RSNRIRSYNALQCSPQALKLVPGIAIIV 78
                 LS    S        Q N +P      +   RS N LQ SP  +KL+P + +I+
Sbjct: 61  NRPAHTLSCKSRSFKCHCFLGQPNELPAVKVAATVLARSCNVLQNSPTIVKLIPAVGVII 120

Query: 79  FATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLP 138
           FA WG+GPL+ Q+R LL ++SD+SWK+S T++++TSY+QPL+LWTGAILICRAL+P++LP
Sbjct: 121 FAVWGVGPLLFQTRKLLFQRSDSSWKRSTTYYIITSYLQPLLLWTGAILICRALEPLILP 180

Query: 139 TEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAV 198
           +E  +VVK+RLLNFVRSLSTVLAFAYCLSS+IQQAQKF  E+TD+ + RNMGFQFAGKAV
Sbjct: 181 SETSQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQKFLAESTDASETRNMGFQFAGKAV 240

Query: 199 YSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLN 258
           YSAVW+A+ SLFMELLGFSTQKW+TAGGLGTVLLTLAGREIFTNFLSS MIHATRPFV+N
Sbjct: 241 YSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVN 300

Query: 259 EWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKT 318
           EWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREAVHIPNHKFTVNVVRNLSQK+HWRIKT
Sbjct: 301 EWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKT 360

Query: 319 HLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKT 378
           HLAISHLDV+KIN+IVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKT
Sbjct: 361 HLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKT 420

Query: 379 SHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGG- 437
           SH EEYLCVKEA+LLDLLRVI HHRARLATP+RT+QKI+SDADLEN+PFAD+ + RG G 
Sbjct: 421 SHFEEYLCVKEAVLLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPFADSTFGRGAGT 480

Query: 438 ASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDS 497
             NRPLL+IEP Y+ING+DK   ++R +R + +QD KT  R   D + D+KV V+  SD+
Sbjct: 481 VPNRPLLVIEPSYKINGDDK---KSRSARPAVDQDNKTATRTKVDTEGDNKV-VTPNSDA 536

Query: 498 KADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKV 557
             ++K    PNSD   +         DP+V +   +KS S    +   +V E S S+ KV
Sbjct: 537 NGNSKTVVTPNSDANGNSKTVVTPKPDPEVGENKPLKSDSS---RENVEVPE-SPSKSKV 592

Query: 558 LGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSI--------SSSGGSDKAGGLQ 609
            G   DN  +  K  D KQ K+    + T+N+K   P+I        SS+  +DK GG  
Sbjct: 593 TGLVVDNSAQ--KDVDVKQAKV----HTTKNTK---PNIDSDNVVSSSSTNNADKTGGFN 643

Query: 610 ES---KQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEE 651
            +   KQ+  K P+ QP  SR  LEENIVLGVALEGSKRTLPI+E
Sbjct: 644 TNMPMKQQGEKKPAAQPHASRTVLEENIVLGVALEGSKRTLPIDE 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545964|ref|XP_002514042.1| conserved hypothetical protein [Ricinus communis] gi|223547128|gb|EEF48625.1| conserved hypothetical protein [Ricinus communis]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/638 (64%), Positives = 492/638 (77%), Gaps = 37/638 (5%)

Query: 56  RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 115
           RSYNAL  SP  LKL+P I+II FA+WGLGPL+R  R + L  SDN+WKKS TH+V+TSY
Sbjct: 101 RSYNALSGSPLVLKLIPAISIIAFASWGLGPLLRLGRIIFLHGSDNNWKKSSTHYVLTSY 160

Query: 116 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 175
           +QPL+LWTGAIL+CRALDPVVL +EA + VKQRLLNFVRSLSTV+AFAYCLSSLIQQAQK
Sbjct: 161 LQPLLLWTGAILVCRALDPVVLQSEANQAVKQRLLNFVRSLSTVMAFAYCLSSLIQQAQK 220

Query: 176 FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235
           FF E  DS DARNMGF FAGKAVYSAVW+A+ SLFMELLGFSTQKWLTAGGLGTVL+TLA
Sbjct: 221 FFTEMNDSSDARNMGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLITLA 280

Query: 236 GREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295
           GREI TNFLSS MIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPT++RG+DREAVHI
Sbjct: 281 GREILTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGDDREAVHI 340

Query: 296 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 355
           PNHKFTVNVVRNLSQK+HWRIKTHLAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRR
Sbjct: 341 PNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKVNNIVADMRKVLAKNPQVEQQRLHRR 400

Query: 356 VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 415
           VFLDNINPENQAL+ILVSCFVKTSH EEYLCVKEA+LLDLLRV+SHHRARLATPIRTVQK
Sbjct: 401 VFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVLSHHRARLATPIRTVQK 460

Query: 416 IFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKT 475
           I+++ADL+NVPFADTI+ R   A+NRPLLLIEP Y+ING+DKTK+ T+   ++ E+DG  
Sbjct: 461 IYNEADLDNVPFADTIFARSRAATNRPLLLIEPSYKINGDDKTKASTQSVSTNEEKDG-- 518

Query: 476 TPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKS 535
                 +V+A S +         ADAK   +P  + + DK  AA  +SD  +  + +  +
Sbjct: 519 ------NVEAASTL---------ADAKAGSSPIVELKRDKV-AATTISDSSITPEGSATT 562

Query: 536 TSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPS 595
            S S         ++  SE ++  S   N       +++++P    +G+  +   +++  
Sbjct: 563 ASDS---------QLGKSEHEI--SVPKN-------AETQEPSGSMEGSRNEKMGLNSED 604

Query: 596 ISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGM-P 654
           ++    + +        QE+ +   T PPVSRP LEENIVLGVALEGSKRTLPIE+ M P
Sbjct: 605 LTLGRSTSEEYSAISQAQEAVERSVTPPPVSRPPLEENIVLGVALEGSKRTLPIEDEMDP 664

Query: 655 SSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSAT 692
           S      +   A+RNG  S TA K+KKD Q+P+  SA+
Sbjct: 665 SPFSSESKELAASRNGGGSLTAGKDKKDSQMPTVPSAS 702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497700|ref|XP_003517697.1| PREDICTED: uncharacterized protein LOC100789444 [Glycine max]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/714 (59%), Positives = 505/714 (70%), Gaps = 74/714 (10%)

Query: 1   MASAGSLQLSHDLGLCRNQVFKKQ----------------------------------FK 26
           M   GSLQLSH LGLCRN    K                                   ++
Sbjct: 1   MTLPGSLQLSHGLGLCRNLDCNKHLVQKFSIIMYSLCKVHYFCICSHLHITFTEGHGTWQ 60

Query: 27  FWPQDFRSFN-----------LSGSPYS----------QINPIPY----RSNRIRSYNAL 61
           F  Q+ R F            LS   +S          Q N +P      +   RS N L
Sbjct: 61  FMRQECRGFQHLRHINRPTHTLSCKSHSFKCHSFLVSGQPNNLPAVKVAATVLARSCNIL 120

Query: 62  QCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLML 121
           Q SP  +KL+P + +I+FA WG+GPL+ Q+R LL ++SD+SWKKS T++++ SY+QPL+L
Sbjct: 121 QNSPIIVKLIPAVGVIIFAIWGVGPLLFQTRKLLFQRSDSSWKKSTTYYIVASYLQPLLL 180

Query: 122 WTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETT 181
           WTGAILICRAL+P++LP+E  ++VK+RLLNFVRSLSTVLAFAYCLSS+IQQ QKF  E+T
Sbjct: 181 WTGAILICRALEPLILPSETSQIVKERLLNFVRSLSTVLAFAYCLSSVIQQVQKFLAEST 240

Query: 182 DSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFT 241
           D+ +ARNMGFQFAGKAVYSAVW+A+ SLFMELLGFSTQKW+TAGGLGTVLLTLAGREIFT
Sbjct: 241 DASEARNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFT 300

Query: 242 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 301
           NFLSS MIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREAVHIPNHKFT
Sbjct: 301 NFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFT 360

Query: 302 VNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNI 361
           VNVVRNLSQK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNPQVEQQRLHRRVFLDNI
Sbjct: 361 VNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNI 420

Query: 362 NPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDAD 421
           NPENQALLILVSCFVKTSH EEYLCVKEAILLDLLRVI HHRARLATP+RT+QKI+SDAD
Sbjct: 421 NPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDAD 480

Query: 422 LENVPFADTIYNRGGG-ASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLT 480
           LEN+PFAD+ +  G G   +RPLL+IEP Y+ING+DK   ++R +R + +QD KT  +  
Sbjct: 481 LENIPFADSTFGHGAGTVPHRPLLVIEPSYKINGDDK---KSRAARPAVDQDNKTATQTK 537

Query: 481 PDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSF 540
            D K  + V+  ++ D++ D K+   PNSD   +         DP+V +   +KS S   
Sbjct: 538 VDTKTHN-VARGTQDDTEGDNKV-LTPNSDANGNSKTVVTPKPDPEVGENKPLKSDSN-- 593

Query: 541 PKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSG 600
            K   +V E S S+ KV G   DN  +  K  D KQ K+    N   N   DN   SS+ 
Sbjct: 594 -KENVEVPE-SPSKSKVTGLVVDNSAQ--KDVDVKQSKVQITKNIKPNIDSDNVVSSSTN 649

Query: 601 GSDKAGGLQES---KQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEE 651
            +DK GG   +   KQ+  K P+ Q   SR  LEENIVLGVALEGSKRTLPI+E
Sbjct: 650 NADKIGGFNTNMPMKQQGEKKPAAQAHASRTVLEENIVLGVALEGSKRTLPIDE 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459093|ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/737 (57%), Positives = 505/737 (68%), Gaps = 85/737 (11%)

Query: 1   MASAGSLQLSHDLGLCRNQVFKKQFKFWP------------------QDFRSFNLSGSPY 42
           MA AGS+QLS +LG+     +  Q K                     QD  S +L  S  
Sbjct: 1   MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMR 60

Query: 43  SQINPIPYRS--------------NRI-----------RSYNALQCSPQALKLVPGIAII 77
             I P+  R               N I           RS NAL+  P  L+LVP ++I+
Sbjct: 61  GSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAALVLTRSCNALRGRPLVLQLVPAVSIV 120

Query: 78  VFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVL 137
            FA WGLGPLMR SRNL L K+D+SWKKS T++V+T Y+QPL+LW GA+LICRALDP++L
Sbjct: 121 AFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPIIL 180

Query: 138 PTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKA 197
           P++  + VKQRLL F+RSLSTVLA AYCLSSLIQQ Q FFME  DS DAR MGFQFAGKA
Sbjct: 181 PSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENNDSSDARTMGFQFAGKA 240

Query: 198 VYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVL 257
           VY+A+WVA+ SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MIHATRPFV+
Sbjct: 241 VYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVV 300

Query: 258 NEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIK 317
           NEWIQTKIEGYEVSGTVEHVGWWSPTI+RG+DREAVHIPNHKFTVNVVRNLSQK+HWRIK
Sbjct: 301 NEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIK 360

Query: 318 THLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVK 377
           THLAISHLDV+KIN+IVADMRKVLAKNPQVEQQRLHRRVFLD I+PENQALLILVSCFVK
Sbjct: 361 THLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSCFVK 420

Query: 378 TSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDAD--LENVPFADTIYNRG 435
           T   EEYLCVKEAILLDLLRVISHH+ARLATPIRTVQK +S AD  +EN+PFAD I+ R 
Sbjct: 421 TPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIFTRS 480

Query: 436 GGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKS 495
             A+NRPLLLIEP Y++NG+DKTK+ T  +  + E+D       T + K D+K   SS  
Sbjct: 481 SAAANRPLLLIEPSYKMNGDDKTKASTGSACQNEEKDANIDASSTSESKPDAKAGASSIL 540

Query: 496 DSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEP 555
           DS  D  +     S++  +   +A  +SDPK+ + VT  ST  ++ + +S+ +       
Sbjct: 541 DSTTDDNVAATSISNSSTNSKVSATSISDPKIQNMVTDGSTQNNYEEQQSEASM------ 594

Query: 556 KVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQE----S 611
                         KV +   P     G+A +   ++ P      G+ KA GL      +
Sbjct: 595 -------------EKVREDINPG----GSAFEKPSLNFP----ESGAGKADGLPSATPLA 633

Query: 612 KQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPV---VKELTTANR 668
           KQ+ N+       ++ PALEENIVLGVALEGSKRTLPIEE      P     KEL  A +
Sbjct: 634 KQDGNR-----ASIATPALEENIVLGVALEGSKRTLPIEEEEMVVSPSGAESKEL-AACQ 687

Query: 669 NGNVSSTAEKEKKDGQI 685
           NGNVS+   K+KK+GQI
Sbjct: 688 NGNVSAPNGKDKKEGQI 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469783|ref|XP_004152598.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/638 (63%), Positives = 481/638 (75%), Gaps = 36/638 (5%)

Query: 56  RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 115
           RS +AL+ +P  LKL+P   +I FA WG+GPLMR  R L L + D SWKKS T++V TSY
Sbjct: 99  RSCDALRSNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSY 158

Query: 116 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 175
           +QPL+LWTGA LICRALDPVVLP+ A + VKQRLLNFVRSLSTVLAFAYCLSSLIQQ QK
Sbjct: 159 VQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQK 218

Query: 176 FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235
           F  E+ D GDARNMGF FAGKAVY+AVW+A+ SLFMELLGFSTQKWLTAGGLGTVLLTLA
Sbjct: 219 FAYESNDPGDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLA 278

Query: 236 GREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295
           GREIFTNFLSS MIHATRPFV+NEWIQTKI+GYEVSGTVEHVGWWSPTI+RG+DREAVHI
Sbjct: 279 GREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHI 338

Query: 296 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 355
           PNHKFTV++VRNL+QK+HWRIKTHLAISHLDV+KIN IVADMRKVL+KNPQVEQQRLHRR
Sbjct: 339 PNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRR 398

Query: 356 VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 415
           +FLDN+NPENQAL+I+VSCFVKTS  EEYLCVKEAILLDLLRVISHHRARLATPIRTVQK
Sbjct: 399 IFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 458

Query: 416 IFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQ-DGK 474
           I+ +ADLENVPF++T+Y+R  GA+NRPLLLIEP Y++NG+DKTK  +RP+RSS E+ + K
Sbjct: 459 IYGEADLENVPFSETMYSR-SGATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAK 517

Query: 475 TTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVK 534
                T   KA      +S  D KAD K P +P        +G     S P ++   + +
Sbjct: 518 QEAVSTSGTKAPDTTGSTSNLDMKADDKKPISP--------SGITPKPSAPILSTSSSEQ 569

Query: 535 STSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNP 594
           S+++  P T +   EI   +  +LG  S +      +  +  PK     ++  + K D P
Sbjct: 570 SSAEK-PVTSN---EIKGEKKDILGLNSKD-----NMPRATLPKRSPSASSPGSEKADIP 620

Query: 595 SISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMP 654
           S SS           ++KQ+  K  ++ P V+RP LEENIVLGVALEGSKRTLPI+E + 
Sbjct: 621 STSS-----------QNKQDGEKTSASPPSVARPPLEENIVLGVALEGSKRTLPIDEDLD 669

Query: 655 SSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSAT 692
           S +       +  RNG+      K+ KDGQ+P+   AT
Sbjct: 670 SKE------NSTQRNGSEFPPNSKDLKDGQMPAVPGAT 701

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485521|ref|XP_003613048.1| MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula] gi|355514383|gb|AES96006.1| MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/774 (55%), Positives = 509/774 (65%), Gaps = 129/774 (16%)

Query: 1   MASAGSLQLSHDLGLCRN---------------QVFKKQFKFWPQDFRSFNLSGSPYSQI 45
           MA  GSLQLSH LGLCRN               Q+     +   QD+R           I
Sbjct: 1   MALPGSLQLSHGLGLCRNLNSNKDRRVKGRCKLQLDNLPLQLMKQDYRGL----QHLHHI 56

Query: 46  NPIPYRSNR-----------------------------IRSYNALQCSPQALKLVPGIAI 76
           N   +R +R                              R  N LQ SP  +KL+P + I
Sbjct: 57  NRSTHRLSRKSRSFKCHCFLVPGERIALSSVKVATTVLTRCCNVLQNSPVIVKLIPAVGI 116

Query: 77  IVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVV 136
           I+FA WG+GPL  Q+R L  +KSDNSWKKS TH+++TSY++PL+LWTGA+LICRA +PV+
Sbjct: 117 IIFAVWGVGPLTFQTRKLFFQKSDNSWKKSTTHYIVTSYLRPLLLWTGAVLICRAFEPVI 176

Query: 137 LPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGK 196
           LPTEA + VK+RLLNFV+SL+TV+AFAYCLSS+IQQAQK   E  D+ + RNMGFQFAGK
Sbjct: 177 LPTEASQAVKERLLNFVKSLATVVAFAYCLSSVIQQAQKIVTENVDASETRNMGFQFAGK 236

Query: 197 AVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFV 256
           AVYSAVW+A+ SLFMELLGFSTQKW+TAGG GTVLLTLAGREIFTNFLSSAMIHATRPFV
Sbjct: 237 AVYSAVWIAAFSLFMELLGFSTQKWVTAGGFGTVLLTLAGREIFTNFLSSAMIHATRPFV 296

Query: 257 LNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRI 316
           +NEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREAVHIPNHKFTVNVVRNL+QK+HWRI
Sbjct: 297 VNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLTQKTHWRI 356

Query: 317 KTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALL------- 369
           KTHLAISHLDV+KIN+IVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQAL+       
Sbjct: 357 KTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMDPFPDPA 416

Query: 370 -----------------------ILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 406
                                  IL+SCFVKTSH EEYLCVKE ILLDLLRVISHHRARL
Sbjct: 417 YAGALVHRATLRLHCNCHGQILGILISCFVKTSHFEEYLCVKETILLDLLRVISHHRARL 476

Query: 407 ATPIRTVQKIFSDADLENVPFADTIYNRGGG-ASNRPLLLIEPPYRINGEDKTKSQTRPS 465
           ATP+RT+QKI++DADL+N+P+ADT +N  G   SNRPLL+I+ PY+ N +DKTKS  R +
Sbjct: 477 ATPVRTLQKIYADADLDNIPYADTTFNGAGPVVSNRPLLVIDSPYKNNADDKTKS--RST 534

Query: 466 RSSGEQDGKTTPRLTPDVKADSKVS---------VSSKSDSKADAKIPEAPNSDTREDK- 515
           R++ +QD KTT R   D K + KV            ++ +S+ DAK+  A NSD  E+K 
Sbjct: 535 RATVDQDDKTTVRTKLDSKTEDKVEPIGAPDTKVRGTQDESEVDAKV-MASNSDVGENKP 593

Query: 516 ---NGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPT-KDRKV 571
              N   A+M  P+++                      S+S  KV G   DN T KD  V
Sbjct: 594 LKSNLNKANMEVPEMS----------------------STSNSKVTGLEVDNSTMKDIHV 631

Query: 572 SDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALE 631
              KQ K+    N   N   DN   SS+  +DKA G   + Q+  + P+  PP  RP LE
Sbjct: 632 ---KQSKVQTVKNTKPNVDSDNLVSSSTNNADKANGNMATNQQGERKPA--PP--RPVLE 684

Query: 632 ENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQI 685
           ENIVLGVAL+GSKRTLPI + + +      +   A++ GN S  A     DG +
Sbjct: 685 ENIVLGVALDGSKRTLPINDEIDTVTTQETKEMAASQGGNGSPKAS----DGNV 734

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508025|ref|XP_003522763.1| PREDICTED: uncharacterized protein LOC100796022 [Glycine max]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/728 (56%), Positives = 493/728 (67%), Gaps = 101/728 (13%)

Query: 1   MASAGSLQLSHDL------GLC---RNQVFKKQFKF---------WPQDFRSFNLSGSPY 42
           M   GS +LSHD+      G C    N++   +              QD  + +L   P+
Sbjct: 1   MVCPGSTKLSHDVRFYSNTGFCSFHHNRMGVGRLHLVTLNLSPCSLKQDSSALHLLSRPH 60

Query: 43  SQINPIPYRSNRI-------------------------RSYNALQCSPQALKLVPGIAII 77
           + I  +P R N                           RSY+ALQ +P  L+L+P I II
Sbjct: 61  APIRHVPSRCNVFICQSVLIPGGGSGTPLMKSASVILTRSYDALQGNPTFLQLIPAIGII 120

Query: 78  VFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVL 137
            FA  GL PL+R SR L L+ +D+SWKKS + ++MTSY QPL+LWTGA+L+CRALDP+VL
Sbjct: 121 AFAVCGLEPLLRLSRVLFLQSTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPLVL 180

Query: 138 PTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKA 197
           P+E+ +VVKQRLLNFVRSLSTV++FAYCLSSLIQQAQKFF+E  DS  ARNMG  FAGKA
Sbjct: 181 PSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGNDSSGARNMGLDFAGKA 240

Query: 198 VYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVL 257
           VY+AVWVA+ SLFMELLGFSTQKW+TAGGLGTVLLTLAGREIFTNFLSS MIHATRPF++
Sbjct: 241 VYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIV 300

Query: 258 NEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIK 317
           NEWIQTKIEGYEVSGTVEHVGWWSPTI+RG+DREAVHIPNHKFTVNVVRNLSQKSHWRIK
Sbjct: 301 NEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIK 360

Query: 318 THLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVK 377
           +++AISHLDV+KIN+IVADMRKVL+KNPQVEQQ+LHRRVFL+N+NPENQAL+IL+SCFVK
Sbjct: 361 SYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVK 420

Query: 378 TSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGG 437
           TSH EEYLCVKEAILLDLLRV+SHHRARLATPIRTVQKI+S+AD EN+PF DTI+ R   
Sbjct: 421 TSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRSS- 479

Query: 438 ASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDS 497
           A NRP LLIEP Y++NGEDKTK  TR +R+S E+D                         
Sbjct: 480 AGNRPFLLIEPLYKVNGEDKTKPSTRSTRASEEKD------------------------- 514

Query: 498 KADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKV 557
               +I E   SDT+ED+N AA   S P V  K   KS S++ PK               
Sbjct: 515 ---FRIDETMASDTKEDENFAATLTSSPDVNSKDKSKSLSEAQPK--------------- 556

Query: 558 LGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNK 617
                    K+  V   K P +    N  Q++  +   ++S   +       +  +E + 
Sbjct: 557 ---------KENAVDAGKGPTVPVSKNLVQSAAPETSPVTSHEINSATSSQSKQDEEKSS 607

Query: 618 LPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGM-PSSQPVVKELTTANRNGNVSSTA 676
           +P +     RP+LEENI+LGVA+EGSKRTLPIEE M PS  P   +     RNG     A
Sbjct: 608 VPLSS---VRPSLEENILLGVAIEGSKRTLPIEEEMTPSPMPAESQEFAVQRNGG-GPPA 663

Query: 677 EKEKKDGQ 684
            K+KKDGQ
Sbjct: 664 SKDKKDGQ 671

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067078|ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|222844070|gb|EEE81617.1| predicted protein [Populus trichocarpa]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/633 (63%), Positives = 473/633 (74%), Gaps = 64/633 (10%)

Query: 56  RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 115
           RSY+AL+ S   LKL+P I II FA WGLGPL+   R + L KSDNSWKKS TH+V+TSY
Sbjct: 53  RSYDALRGSNLVLKLIPAIGIITFAAWGLGPLIWLGRTIFLHKSDNSWKKSSTHYVVTSY 112

Query: 116 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 175
           +QPL+LWTGA LICRALDPVVL +E  + VKQRLLNFVRSLSTV+AFAYCLSSLIQQAQK
Sbjct: 113 LQPLLLWTGATLICRALDPVVLQSEVSQAVKQRLLNFVRSLSTVVAFAYCLSSLIQQAQK 172

Query: 176 FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235
           F  ET +S DARNMGF FAGKAVY+AVW+A+ SLFMELLGFSTQKWLTAGGLGTVLLTLA
Sbjct: 173 FITETNESSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLA 232

Query: 236 GREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295
           GREIFTNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+RG+DREAVHI
Sbjct: 233 GREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHI 292

Query: 296 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 355
           PNHKF+V++VRNLSQK+HWRIKTHLAISHLDV KIN+IVADMRKVLAKNPQ+EQQRLHRR
Sbjct: 293 PNHKFSVSIVRNLSQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQIEQQRLHRR 352

Query: 356 VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 415
           VFLDNINPENQAL+ILVSCFVKTSH EEYLCVKEA+LLDLLRVISHHRARLATPIRTVQK
Sbjct: 353 VFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARLATPIRTVQK 412

Query: 416 IFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKT 475
           I+S+ADLENVPF+D+I+ R G  +N PLLLIEP Y+IN EDK K+  R  R++ E+D K 
Sbjct: 413 IYSEADLENVPFSDSIFTRSGATANHPLLLIEPSYKINSEDKVKASNRSLRANEEKDAKV 472

Query: 476 TPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKS 535
              L               S+ KADAK    P  D++ DK                 V +
Sbjct: 473 EAALV--------------SELKADAKAGSMPVVDSKRDK-----------------VVA 501

Query: 536 TSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPS 595
            S S   T SKV+++S+S+P+++ +                     +G++  N++     
Sbjct: 502 KSTSNSSTNSKVSDVSASDPQLITTP--------------------EGSSVSNTE----- 536

Query: 596 ISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLP---IEEG 652
             S G   ++  + +SKQ+  +     P ++RP LEENIVLGVALEGSKRTLP   IEE 
Sbjct: 537 --SVGERTESPDISQSKQDIER-SVASPLMTRPLLEENIVLGVALEGSKRTLPIEEIEEE 593

Query: 653 MPSSQ-PVVKELTTANRNGNVSSTAEKEKKDGQ 684
           M SS  P+  +   A++N   S +  K+KKD +
Sbjct: 594 MDSSPFPLESKELAASQNAGQSPSV-KDKKDSR 625

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
TAIR|locus:2142414	673	MSL2 "MSCS-like 2" [Arabidopsi	0.602	0.625	0.716	8.5e-190
TAIR|locus:2015297	678	MSL3 "MSCS-like 3" [Arabidopsi	0.587	0.606	0.642	4.3e-156
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.243	0.495	0.292	1.2e-15
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.244	0.446	0.242	7.3e-13
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.244	0.446	0.242	7.3e-13
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.270	0.380	0.227	8.9e-05

TAIR|locus:2142414 MSL2 "MSCS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1612 (572.5 bits), Expect = 8.5e-190, Sum P(3) = 8.5e-190
 Identities = 304/424 (71%), Positives = 349/424 (82%)

Query:    56 RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 115
             +S+  +Q  P   KLVP +A++VF+ WGL P  RQ RN+LL K+DN WKKS T+HVMTSY
Sbjct:    99 KSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSY 158

Query:   116 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 175
             +QPL+LW GA+ ICRALDPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCLSSLIQQ QK
Sbjct:   159 VQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQK 218

Query:   176 FFMETTDSGDARNMGFQFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXX 235
              F ET++  D RNMGFQFAGK            LFMELLGFSTQKW              
Sbjct:   219 LFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLA 278

Query:   236 XREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295
              REI TNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREA+HI
Sbjct:   279 GREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHI 338

Query:   296 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 355
             PNHKFTVNVVRNL+QK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP VEQQRLHRR
Sbjct:   339 PNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRR 398

Query:   356 VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 415
             VFL+N+ PENQAL IL+SCFVKTSHHEEYL VKEAILLDLLRVISHHRARLATPIRT++K
Sbjct:   399 VFLENVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRK 458

Query:   416 IFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGK- 474
             ++++ D+EN PF +++Y  GG  S RPL+LIEP Y+INGEDK+KSQ R ++ + EQ+ K 
Sbjct:   459 MYTETDVENTPFGESMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKG 516

Query:   475 TTPR 478
             + P+
Sbjct:   517 SNPK 520

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IGI

TAIR|locus:2015297 MSL3 "MSCS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1416 (503.5 bits), Expect = 4.3e-156, Sum P(2) = 4.3e-156
 Identities = 268/417 (64%), Positives = 328/417 (78%)

Query:    56 RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRK-SDNSWKKSKTHHVMTS 114
             R Y+AL  +P  +KL+P + I+ FATWGL PL+R +R  L  K +D + +KS T +++ S
Sbjct:   100 RVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSSTQYIVVS 159

Query:   115 YIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQ 174
             Y+QPL+LW+GAIL+CR LDP+VLP+ AG+ +KQRLL F RS+STVLAF+ CLSSL+QQ Q
Sbjct:   160 YLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQ 219

Query:   175 KFFMETTDSGDARNMGFQFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXX 234
             KFFMET +  D RNMGF FAGK            LFMELLGFSTQKW             
Sbjct:   220 KFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTL 279

Query:   235 XXREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 294
               REI TNFLSS MIHATRPFVLNEWIQTKI GYEVSGTVE VGWWSPTI+RG+DREAVH
Sbjct:   280 AGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVH 339

Query:   295 IPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHR 354
             IPNH+F+VN+VRNL+QK+HWRIKTHLAISHLDV KIN+IVADMRKVL+KNPQ+EQQ++HR
Sbjct:   340 IPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHR 399

Query:   355 RVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 414
             RVFL++I+PENQAL IL+SCFVKTS  EEYLCVKEA+LLDLL VI HH ARLATPIRTVQ
Sbjct:   400 RVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQ 459

Query:   415 KIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQ 471
             ++ ++A+++   F+D ++N+   A NR  +LIEP Y+IN +D +KS   PS S G++
Sbjct:   460 RMRNEAEVDTAGFSDIVFNQA--AMNRRYMLIEPSYKINSDDNSKS---PSPSPGQK 511

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0010020 "chloroplast fission" evidence=IGI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 221 (82.9 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 52/178 (29%), Positives = 96/178 (53%)

Query:   237 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIP 296
             ++I +NF S  M++  RPF + +WI++     E  GTV  +GW    I   ++R  +++P
Sbjct:   161 KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFDNRP-LYVP 217

Query:   297 NHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRV 356
             N  F+   V N  + ++ RI T + + + D  K+  IV  +R++L  +P ++Q    R+ 
Sbjct:   218 NSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQ----RQT 273

Query:   357 FLDNINP-ENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 413
              L   N   + +L I+V CF KT+   E+L  ++ + L ++ ++  H A  A P +T+
Sbjct:   274 LLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 199 (75.1 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 43/177 (24%), Positives = 98/177 (55%)

Query:   237 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIP 296
             ++   NF    MI+  RPF + +WI++     ++ GTVE++GW   T +R  D+ ++++P
Sbjct:   178 KDTLGNFFGGMMIYWDRPFSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVP 234

Query:   297 NHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRV 356
             N   +   V N S+ ++ R+K  + + + D  KI  +   + ++L  +P+++   + + +
Sbjct:   235 NGILSNVAVENPSRMTNRRLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTL 291

Query:   357 FLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 413
             F++       +L ++V  F KT+   ++  +++ I+L ++ +I+ + A  A P +T+
Sbjct:   292 FVNLFEFAPSSLNMMVYTFTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 199 (75.1 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 43/177 (24%), Positives = 98/177 (55%)

Query:   237 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIP 296
             ++   NF    MI+  RPF + +WI++     ++ GTVE++GW   T +R  D+ ++++P
Sbjct:   178 KDTLGNFFGGMMIYWDRPFSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVP 234

Query:   297 NHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRV 356
             N   +   V N S+ ++ R+K  + + + D  KI  +   + ++L  +P+++   + + +
Sbjct:   235 NGILSNVAVENPSRMTNRRLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTL 291

Query:   357 FLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 413
             F++       +L ++V  F KT+   ++  +++ I+L ++ +I+ + A  A P +T+
Sbjct:   292 FVNLFEFAPSSLNMMVYTFTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 8.9e-05, P = 8.9e-05
 Identities = 45/198 (22%), Positives = 86/198 (43%)

Query:   212 ELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 271
             E  G + Q                 R+I  N LS   +  +RPF + + I+    G  V 
Sbjct:   301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIKA---G-SVE 356

Query:   272 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 330
             G V  +G  + +++  E +  V +PN  F+  V+ N S ++ WR I + + +   D+  I
Sbjct:   357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414

Query:   331 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEA 390
               I  +++++L  N +V   +     +L  +  E     + + C +     EE    ++ 
Sbjct:   415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRV--EKSFAELTIGCNLIRMGKEELYNTQQE 472

Query:   391 ILLDLLRVISHHRARLAT 408
             +LL+ +++I  H   L T
Sbjct:   473 VLLEAVKIIKKHGVSLGT 490


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      699       629   0.00091  120 3  11 22  0.43    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  331 KB (2167 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  57.08u 0.10s 57.18t   Elapsed:  00:00:03
  Total cpu time:  57.08u 0.10s 57.18t   Elapsed:  00:00:03
  Start:  Tue May 21 16:03:21 2013   End:  Tue May 21 16:03:24 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56X46	MSL2_ARATH	No assigned EC number	0.5679	0.8726	0.9063	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	699
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	1e-19
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	6e-17

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 10/194 (5%)

Query: 201 AVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEW 260
            + V    + +  LG +    L   G   + L  A +++ +N +S  +I   +PF + +W
Sbjct: 5   LIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKIGDW 64

Query: 261 IQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHL 320
           I+      +V GTVE +G  S T +R  D   V IPN K   + + NLS+    R++  +
Sbjct: 65  IEIG----DVEGTVEDIGIRS-TTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSI 119

Query: 321 AISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTS 379
            +++  D  K+  ++  +++   ++P V  +     V        + +L   V  +VKT 
Sbjct: 120 GVAYSSDPKKLEKVIEILKEAAYEHPLV-LKDPEPPVVFGEF--GDSSLNFEVRVWVKTL 176

Query: 380 HHEEYLCVKEAILL 393
              EY  V+  + L
Sbjct: 177 -PGEYFNVRSELNL 189

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 23/305 (7%)

Query: 116 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 175
           I  ++L    I + + L  ++L    G      LL  +R L  +L        LI    K
Sbjct: 7   INLIILELLLIFLLKLLLRLLLYVLNG-----LLLILLRKLLLLLLILLIAFLLIAYLVK 61

Query: 176 FFMETTDSGDARNMGF-------QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 228
             + +     A             F    +   + V +  + + +LG      L   G  
Sbjct: 62  LLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGAL 121

Query: 229 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGE 288
            + + LA +++ +N ++   +   RPF + +WI+    G  V GTVE +G  S T +R  
Sbjct: 122 GLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI---GSGVEGTVEDIGLRS-TTIRTL 177

Query: 289 DREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVE 348
           D   V IPN K     V N S++   R++  + +++     +   +  +++VL + P+V 
Sbjct: 178 DGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDS--DLEKALKILKEVLEELPEVL 235

Query: 349 QQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLAT 408
           +      + +  +   +  + I V  +      E+   V+  + L +   +      +  
Sbjct: 236 KIEPEPVIGVSELG--DSGINIRVRFWTNP---EDLWSVQRELNLRIKEALEEAGIEIPY 290

Query: 409 PIRTV 413
           P ++V
Sbjct: 291 PQQSV 295

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	699
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	100.0
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.76
PRK10263	1355	DNA translocase FtsK; Provisional	88.18
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	84.58
PRK02509	973	hypothetical protein; Provisional	81.47

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=3.9e-43  Score=369.96  Aligned_cols=250  Identities=18%  Similarity=0.245  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 005371          150 LNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGT  229 (699)
Q Consensus       150 l~~l~siliIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~g  229 (699)
                      ++++.+++ +++++|++.+++..+.+.+..+..   .+.....++.+++++++++++++++|..+|++++++++++|++|
T Consensus        29 ~~i~~al~-il~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~g  104 (286)
T PRK10334         29 VNIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAG  104 (286)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            34444444 556688888988876665554432   23345668899999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecc
Q 005371          230 VLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS  309 (699)
Q Consensus       230 laIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~S  309 (699)
                      +++|||+|++++|++||++|+++|||++||||++    ++.+|+|++|+||+ |+||++||+.++|||+.+.++.|+|||
T Consensus       105 laiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N~s  179 (286)
T PRK10334        105 LAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS  179 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEEcC
Confidence            9999999999999999999999999999999999    78999999999999 999999999999999999999999999


Q ss_pred             CCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHH
Q 005371          310 QKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVK  388 (699)
Q Consensus       310 r~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr  388 (699)
                      +.+.+|+.+.++++| +|++++++   .++++++++|.+..++ .|.|.+.++++  ++++++++||+++.+   ++.++
T Consensus       180 ~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~~~~~vl~~p-~p~v~~~~~~d--ssi~~~v~~wv~~~~---~~~~~  250 (286)
T PRK10334        180 REPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSGD---LQNVY  250 (286)
T ss_pred             CCCeEEEEEEEEecCCCCHHHHHH---HHHHHHHhCCceecCC-CCEEEEEeeeC--ceEEEEEEEEEecch---hHHHH
Confidence            988889999999999 99999999   4678889999999887 78999999995  899999999999864   57899


Q ss_pred             HHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005371          389 EAILLDLLRVISHHRARLATPIRTVQKIF  417 (699)
Q Consensus       389 ~eL~~~Il~~~~e~GIe~a~P~qtv~~~~  417 (699)
                      .+++++|+++|+++||++|||+|+++...
T Consensus       251 ~~~~~~I~~~f~~~gI~ip~p~~~v~~~~  279 (286)
T PRK10334        251 WDVLERIKREFDAAGISFPYPQMDVNFKR  279 (286)
T ss_pred             HHHHHHHHHHHHHCCCcCCCCCeEEEecc
Confidence            99999999999999999999999988553

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=374.82  Aligned_cols=287  Identities=11%  Similarity=0.110  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc----CCc
Q 005371          110 HVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQ-AQKFFMETT----DSG  184 (699)
Q Consensus       110 ~il~sl~~Pl~l~l~~i~i~~al~~l~lp~~~~~~v~~~ll~~l~siliIl~~~~ll~~li~~-i~~~l~~~~----~~~  184 (699)
                      .+++.++ |+.+++++++++.++..+.+..+........+...+..++++++++++++.+.+. +.+++.+..    ...
T Consensus       425 ~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~~~~~~~  503 (741)
T PRK11465        425 AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPS  503 (741)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence            4555555 8888777877877776554433211111222333343333344333333333332 223332211    111


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEe
Q 005371          185 DARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTK  264 (699)
Q Consensus       185 ~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Ik  264 (699)
                      .+..+...++++++++++++++++++|+.+|++++++++++|++|+++|||+|++++|+++|++|++++||++||||++ 
T Consensus       504 ~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v-  582 (741)
T PRK11465        504 ARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI-  582 (741)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE-
Confidence            2245678899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHh
Q 005371          265 IEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAK  343 (699)
Q Consensus       265 i~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~  343 (699)
                         ++++|+||+|++|+ |+||++||+.++|||+.+.+  |+||++. ..++.+.++|+| +|+|+++++++++.+.+.+
T Consensus       583 ---~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~  655 (741)
T PRK11465        583 ---GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELME  655 (741)
T ss_pred             ---CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Confidence               78999999999999 99999999999999999975  9999985 667888999999 9999999999888888888


Q ss_pred             CCCc----cccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEE
Q 005371          344 NPQV----EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRT  412 (699)
Q Consensus       344 ~p~v----~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qt  412 (699)
                      +|++    ..++  +.+.+.++++  +++++++++|+++.   ++|.++.+++++|++.|+++||++++|+..
T Consensus       656 dpe~~~~il~~p--~~vgV~~lgd--Ssi~lrvr~~t~p~---~qw~v~rel~~~IK~~Fde~GIeIP~~tv~  721 (741)
T PRK11465        656 NEEIRGLIIGEP--NFAGIVGLTN--TAFTLRVSFTTLPL---KQWTVRFALDSQVKKHFDLAGVRAPVQTYQ  721 (741)
T ss_pred             CccccccccCCC--CeEEEEEecC--ceEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCCCCCCceE
Confidence            8864    3333  3577889984  79999999999764   568899999999999999999998766655

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-39  Score=387.67  Aligned_cols=251  Identities=20%  Similarity=0.213  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 005371          149 LLNFVRSLSTVLAFAYCLSSLIQQAQKFFM-ETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL  227 (699)
Q Consensus       149 ll~~l~siliIl~~~~ll~~li~~i~~~l~-~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv  227 (699)
                      +.+++.++ ++++++|++.+++..+.+.+. .+...   +.....++.+++++++|++++++++..+|++.+++.+.+|+
T Consensus       836 l~~Ll~al-lIl~i~~~l~r~l~~ll~~~~~~rl~l---~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~ga  911 (1113)
T PRK11281        836 LGNLLFAL-IILVVTYVLVRNLPGLLEVLVLSRLNL---RQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAA  911 (1113)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccC---CchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            44544444 455678888888887665433 32221   22234568899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 005371          228 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN  307 (699)
Q Consensus       228 ~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N  307 (699)
                      +|+++|||+|++++||+||++|+++|||+|||+|+|    ++..|+|++|++|+ |+||++||+.|+|||+.|.++.|+|
T Consensus       912 LgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~IiN  986 (1113)
T PRK11281        912 LSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERLIN  986 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCceEe
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             ccCCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHH
Q 005371          308 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYL  385 (699)
Q Consensus       308 ~Sr~~~-~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~  385 (699)
                      ||.++. +|+.+.++|+| +|++++++   .+.+++.++|.+..+| +|.|++.+|++  +++.++++||+++.  .+++
T Consensus       987 ~S~~~~~~Rv~i~vgV~Y~sDi~~v~~---iL~eaa~~~p~Vl~~P-~P~V~~~~fgd--ssi~~~lr~wv~~~--~~~~ 1058 (1113)
T PRK11281        987 WSLSDTVTRVVIKVGVAYGSDLEKVRE---LLLQAATENPRVMKEP-EPQVFFLNFGA--STLDHELRLYVREL--GDRS 1058 (1113)
T ss_pred             CCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHcCcccccCC-CCEEEEEeccC--ceEEEEEEEEEcCH--hhHH
Confidence            999874 78999999999 99999998   5678899999999988 78999999995  89999999999864  5788


Q ss_pred             HHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 005371          386 CVKEAILLDLLRVISHHRARLATPIRTVQKI  416 (699)
Q Consensus       386 ~vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~  416 (699)
                      .++++++.+|++.|+++||++|||+++||+.
T Consensus      1059 ~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~ 1089 (1113)
T PRK11281       1059 PTVDELNRRIDRLFRENDINIAFNQLDVFLK 1089 (1113)
T ss_pred             HHHHHHHHHHHHHHHHCCCcCCCCCeeEEec
Confidence            9999999999999999999999999998854

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=1.3e-38  Score=380.33  Aligned_cols=252  Identities=14%  Similarity=0.156  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 005371          149 LLNFVRSLSTVLAFAYCLSSLIQQAQKFFM-ETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL  227 (699)
Q Consensus       149 ll~~l~siliIl~~~~ll~~li~~i~~~l~-~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv  227 (699)
                      +.+++.+++ +++++|++.+.+..+.+.+. ++..   .......++.++++++++++++++++..+|++.+++.+.+|+
T Consensus       833 l~~ll~All-Iliv~~~l~r~l~~lle~~l~~~~~---l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga  908 (1109)
T PRK10929        833 LGSVLIAIL-VFIITTQLVRNLPALLELALLQHLD---LTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA  908 (1109)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            344555444 45567777777777554433 3322   223345678899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 005371          228 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN  307 (699)
Q Consensus       228 ~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N  307 (699)
                      +|++||||+|++++||+||++|+++|||++||+|+|    ++..|+|++|++|+ |+|+++||+.++|||+.|.++.|+|
T Consensus       909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN  983 (1109)
T PRK10929        909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN  983 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             ccCCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHH
Q 005371          308 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYL  385 (699)
Q Consensus       308 ~Sr~~~-~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~  385 (699)
                      ||+.+. +|+.+.++|+| +|+++++++   +.+++.++|.+..+| .|.|++.++++  +++.|+++||++..  .+++
T Consensus       984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL~~P-~P~V~~~~fgd--ssi~~elr~wv~~~--~~~~ 1055 (1109)
T PRK10929        984 WSLSDSVTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVLDNP-APEVFLVDLQQ--GIQIFELRIYAAEM--GHRM 1055 (1109)
T ss_pred             cCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCccccCCC-CCEEEEEecCC--CceEEEEEEEEcCh--hhHH
Confidence            999885 79999999999 999999994   678899999999887 78999999984  79999999999743  5679


Q ss_pred             HHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005371          386 CVKEAILLDLLRVISHHRARLATPIRTVQKIF  417 (699)
Q Consensus       386 ~vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~~  417 (699)
                      .++++++.+|++.|+++||++|||++++|+..
T Consensus      1056 ~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~ 1087 (1109)
T PRK10929       1056 PLRHEIHQLILAGFREHGIDMPFPPFQMRLES 1087 (1109)
T ss_pred             HHHHHHHHHHHHHHHHCCCcCCCCCeEEEeec
Confidence            99999999999999999999999999999663

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.1e-34  Score=332.18  Aligned_cols=250  Identities=18%  Similarity=0.206  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 005371          150 LNFVRSLSTVLAFAYCLSSLIQQAQK-FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG  228 (699)
Q Consensus       150 l~~l~siliIl~~~~ll~~li~~i~~-~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~  228 (699)
                      ..++.++++ +++++++.|.+....+ +++.+.+-+.   -.-..+.+++.++++.+++++.++.+|++.+++-..+|.+
T Consensus       559 ~~ll~avl~-~~~~~~l~r~~~~~L~~~vl~r~~~~~---G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gAL  634 (835)
T COG3264         559 GALLQAVLL-FLITYVLTRNLPGWLEVRVLQRLDLDA---GTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGAL  634 (835)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccCc---chHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHh
Confidence            344555544 4556777777776544 5555543221   1224689999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEec
Q 005371          229 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL  308 (699)
Q Consensus       229 glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~  308 (699)
                      |+++||++|++++||+||++|+++|||||||||++    |++.|+|.+|+.|+ |+|+++||+-++|||+.|.++.|.||
T Consensus       635 svGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NW  709 (835)
T COG3264         635 SVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINW  709 (835)
T ss_pred             hhhhchhHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeee
Confidence            99999999999999999999999999999999999    78999999999999 99999999999999999999999999


Q ss_pred             cCCC-ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHH
Q 005371          309 SQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLC  386 (699)
Q Consensus       309 Sr~~-~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~  386 (699)
                      +.++ ..|+.+.++++| +|++++++   .+.+.++.||.+.++| +|.|++.+|++  ++++|++++|+....-.  ..
T Consensus       710 s~~~~~~R~~i~v~vay~sD~~~V~~---~Ll~~A~~~p~Vl~~P-~P~v~f~~fg~--s~L~fELr~~v~~~~~~--~~  781 (835)
T COG3264         710 SLRDTTTRLVIPVGVAYGSDPELVRE---LLLEAAREHPRVLKDP-APEVFFTAFGA--SSLDFELRVYVAELGDR--MP  781 (835)
T ss_pred             eccCceEEEEEEecccCCCCHHHHHH---HHHHHHHhCCCccCCC-CCeeEeecccc--cceeEEEEEEeeccccc--cc
Confidence            9988 689999999999 99999999   5889999999999999 88999999995  79999999999987433  34


Q ss_pred             HHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 005371          387 VKEAILLDLLRVISHHRARLATPIRTVQKI  416 (699)
Q Consensus       387 vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~  416 (699)
                      ++++++..|.+.|+||||+++||++.+++.
T Consensus       782 ~~~~l~~~I~~~fre~gI~ipfpq~~v~l~  811 (835)
T COG3264         782 VRSELNRAILDRFRENGIEIPFPQREVRLK  811 (835)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCCchHheEec
Confidence            999999999999999999999999998855

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=1.2e-35  Score=296.19  Aligned_cols=203  Identities=25%  Similarity=0.414  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEE
Q 005371          196 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVE  275 (699)
Q Consensus       196 ~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~Ve  275 (699)
                      ++++++++++++++++..+|++...+++++|++|+++|||+|++++|+++|++|++++||++||||++    ++..|+|+
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~   77 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE   77 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999    79999999


Q ss_pred             EEeceeeEEEEecCCcEEEEeccccccCcEEeccC-CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccc
Q 005371          276 HVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ-KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLH  353 (699)
Q Consensus       276 eIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr-~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~  353 (699)
                      +|+|++ |++|++||++++|||+.|.++.|.|||+ +..++..+.+.++| +|+++++++.+.+.+.++++|.+...+ .
T Consensus        78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~  155 (206)
T PF00924_consen   78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E  155 (206)
T ss_dssp             EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred             hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence            999999 9999999999999999999999999999 77889999999999 898999999999999999999888765 6


Q ss_pred             eEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 005371          354 RRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL  406 (699)
Q Consensus       354 p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~  406 (699)
                      |.+.+..++.  .++.++++||++..++.+++.+|++++.++++.|++|||+|
T Consensus       156 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~  206 (206)
T PF00924_consen  156 PRVVVDEIGD--SSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI  206 (206)
T ss_dssp             EEEEEEEE-S--SSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CeEEEccccC--CceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            7899998885  79999999999998889999999999999999999999986

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.7e-33  Score=293.36  Aligned_cols=211  Identities=21%  Similarity=0.350  Sum_probs=193.5

Q ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 005371          190 GFQ-FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY  268 (699)
Q Consensus       190 ~i~-~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~  268 (699)
                      ... ++.++.++++++++++++|..+|++++++++++|++|+++|||+|++++|+++|+++++++||++||||++    +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~  157 (316)
T COG0668          82 TLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----G  157 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----C
Confidence            344 78999999999999999999999999999999999999999999999999999999999999999999999    7


Q ss_pred             -CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCC
Q 005371          269 -EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ  346 (699)
Q Consensus       269 -~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~  346 (699)
                       ++.|+|++|++++ |++|++||++++|||+.+.++.|.||++...+++.+.+.++| +|++++++++.++.+   ..+.
T Consensus       158 ~~~~G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~---~~~~  233 (316)
T COG0668         158 SGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLE---ELPE  233 (316)
T ss_pred             CCceEEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHHHHHH---hccc
Confidence             6999999999999 999999999999999999999999999998989999999999 999999996555544   4444


Q ss_pred             cc-ccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 005371          347 VE-QQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ  414 (699)
Q Consensus       347 v~-~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qtv~  414 (699)
                      .. .++ .|.+++.++++  +++.+++++|++..+   ++..+++++..+++.++++||+++||++.+.
T Consensus       234 ~~~~~~-~~~v~~~~~~~--~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~  296 (316)
T COG0668         234 VLKIEP-EPVIGVSELGD--SGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL  296 (316)
T ss_pred             ccccCC-CcEEEEeeccC--CceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence            44 244 67899999985  799999999999875   6899999999999999999999999999977

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.76  E-value=2.6e-18  Score=197.92  Aligned_cols=218  Identities=17%  Similarity=0.194  Sum_probs=190.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh-hhhhccCCccCCcEEEEeecCC
Q 005371          190 GFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS-AMIHATRPFVLNEWIQTKIEGY  268 (699)
Q Consensus       190 ~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aG-i~I~~~rPFrIGD~I~Iki~~~  268 (699)
                      .+.-+.+++.+++-++++++.+-.+|++...+++..+-.-+++.|.+.+++++++.+ |++++.+||.+||+|.|    +
T Consensus       479 aV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V----D  554 (714)
T KOG4629|consen  479 AVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV----D  554 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----e
Confidence            466677777778888888888889999999999888888888999999999999986 55788899999999999    5


Q ss_pred             CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCc
Q 005371          269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV  347 (699)
Q Consensus       269 ~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v  347 (699)
                      |+.-.|++++|++ |.+..+||+.+++||+.+.++.|.|+.|++.....+++.++. ++.+|+.++.+.+.++++++|..
T Consensus       555 g~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~  633 (714)
T KOG4629|consen  555 GVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDD  633 (714)
T ss_pred             ceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccc
Confidence            7899999999999 999999999999999999999999999999888899999999 99999999999999999999988


Q ss_pred             cccccceEEEEEeeCCCCc-eEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 005371          348 EQQRLHRRVFLDNINPENQ-ALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ  414 (699)
Q Consensus       348 ~~~~~~p~V~v~~~~~~d~-sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qtv~  414 (699)
                      +.+.  +.+.+.++.+.+. .+.+.+.++.+.++..+++..|.++..++.+.+++.+|++-++.+++.
T Consensus       634 ~~p~--~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in  699 (714)
T KOG4629|consen  634 YYPD--LMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDIN  699 (714)
T ss_pred             cccc--hhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchh
Confidence            8443  4577777776433 566666777778899999999999999999999999999965555544

>PRK10263 DNA translocase FtsK; Provisional

Probab=88.18  E-value=9.7  Score=48.67  Aligned_cols=14  Identities=14%  Similarity=-0.069  Sum_probs=6.1

Q ss_pred             eccccccCcEEecc
Q 005371          296 PNHKFTVNVVRNLS  309 (699)
Q Consensus       296 PNs~l~s~~I~N~S  309 (699)
                      .+...+...+.|-.
T Consensus       245 ~~~~~~~~~~~~~~  258 (1355)
T PRK10263        245 ARRKRLAEKFINPM  258 (1355)
T ss_pred             hhhhhhhhhccccc
Confidence            34444444444443

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=84.58  E-value=66  Score=35.04  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCC
Q 005371          313 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ  346 (699)
Q Consensus       313 ~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~  346 (699)
                      ...+.+++.++. .+.++..++.+++.+.+++...
T Consensus       244 ~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~  278 (304)
T COG0053         244 RIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFP  278 (304)
T ss_pred             eEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcC
Confidence            344678888888 8999999999999998877543

>PRK02509 hypothetical protein; Provisional

Probab=81.47  E-value=1.1e+02  Score=38.45  Aligned_cols=18  Identities=22%  Similarity=0.226  Sum_probs=10.1

Q ss_pred             CCCcCcccchhHHHHhhc
Q 005371           45 INPIPYRSNRIRSYNALQ   62 (699)
Q Consensus        45 ~~pv~~r~~~p~l~~~l~   62 (699)
                      ..|+|.....+.+|+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~  161 (973)
T PRK02509        144 SPPLPSPFRLEWLWNLLT  161 (973)
T ss_pred             CCCCCCcccchHHHHHHH
Confidence            445566666666655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	699
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	9e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 74.3 bits (183), Expect = 9e-15
 Identities = 35/194 (18%), Positives = 80/194 (41%), Gaps = 20/194 (10%)

Query: 192 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHA 251
            F    V   +   +    +  +G  T   +   G   +++ LA +   +N  +  ++  
Sbjct: 67  DFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVM 126

Query: 252 TRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQK 311
            RPF   E++        V+GTV  V  +S T +R  D + + IPN K     + N S++
Sbjct: 127 FRPFRAGEYVDLG----GVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSRE 181

Query: 312 SHWRIKTHLAISH-LDVHK----INSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQ 366
              R +  + +++  D+ +    + +I+    ++L K+ ++        V L+ +     
Sbjct: 182 PVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRIL-KDREMT-------VRLNELG--AS 231

Query: 367 ALLILVSCFVKTSH 380
           ++  +V  +  +  
Sbjct: 232 SINFVVRVWSNSGD 245

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 6e-12
 Identities = 81/527 (15%), Positives = 155/527 (29%), Gaps = 145/527 (27%)

Query: 18  NQVFKKQFKF----WPQDFRSFNLSGSPY-SQINPI--------PYRSNRIRSYNALQCS 64
            +V +  +KF       + R  ++    Y  Q + +         Y  +R++ Y  L+  
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-- 141

Query: 65  PQAL-KLVPGIAIIVFATWGLG------PLMRQSRNLLLRKSDNS--WKKSKTHHVMTSY 115
            QAL +L P   +++    G G       +    +  +  K D    W   K  +   + 
Sbjct: 142 -QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETV 198

Query: 116 IQPLMLWTGAILICRALDP-----------VVLPTEAGEVVKQRLL---NFVRSL----- 156
           ++  ML      +   +DP           + L   + +   +RLL    +   L     
Sbjct: 199 LE--MLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 157 ----STVLAFAY-CLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFM 211
                   AF   C         K  + T            F   A  + +     SL  
Sbjct: 253 VQNAKAWNAFNLSC---------KILLTTRFKQVTD-----FLSAATTTHI-----SLDH 293

Query: 212 ELLGFSTQKWLT--AGGLGTVLLTLAGREIFTNFLSSAMIHA-TRPFV--LNEWIQTKIE 266
             +  +  +  +     L      L    + TN    ++I    R  +   + W     +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 267 GYE--VSGTVEHVGWWSPTIVRG--ED----REAVHIPNHKFTV-------NVVRNLSQK 311
                +  ++  +    P   R   +       + HIP    ++       + V  +  K
Sbjct: 354 KLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 312 SHWRIKTHLAISHLD--VHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP----EN 365
            H   K  L           I SI  +++          +  LHR + +D+ N     ++
Sbjct: 411 LH---KYSLVEKQPKESTISIPSIYLELKV-----KLENEYALHRSI-VDHYNIPKTFDS 461

Query: 366 QALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHH--RARLATPIRTVQKIFSDAD-L 422
             L+          + ++Y              I HH         +   + +F D   L
Sbjct: 462 DDLIPP--------YLDQYFY----------SHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 423 EN-VPFADTIYNRGGGASNRPLLLIEPPYR--INGEDKTKSQTRPSR 466
           E  +    T +N  G   N   L     Y+  I       +  +  R
Sbjct: 504 EQKIRHDSTAWNASGSILN--TLQQLKFYKPYI-----CDNDPKYER 543

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	699
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=9.4e-43  Score=365.43  Aligned_cols=243  Identities=17%  Similarity=0.240  Sum_probs=219.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Q 005371          157 STVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAG  236 (699)
Q Consensus       157 liIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAa  236 (699)
                      +++++++|++.+++..+.+.+.++..   .+.....++.+++++++|+++++++|..+|++++++++++|++|+++|||+
T Consensus        35 ~~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~  111 (286)
T 2vv5_A           35 LAIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLAL  111 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            34556688888888776655554432   234456789999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEE
Q 005371          237 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRI  316 (699)
Q Consensus       237 qd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri  316 (699)
                      |++++|++||++|+++|||++||||++    ++..|+|++|+|++ |++|++||+.++|||+.+.++.|+|||+.+.+|+
T Consensus       112 q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~  186 (286)
T 2vv5_A          112 QGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRRN  186 (286)
T ss_dssp             THHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEE
T ss_pred             HHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEEE
Confidence            999999999999999999999999999    68999999999999 9999999999999999999999999999988899


Q ss_pred             EEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHH
Q 005371          317 KTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDL  395 (699)
Q Consensus       317 ~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~I  395 (699)
                      .+.++++| +|++++++   .+.++++++|.+..++ .|.|++.++++  ++++++++||+++.   +++.+|+++++++
T Consensus       187 ~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~--~~i~~~v~~~~~~~---~~~~~~~~l~~~i  257 (286)
T 2vv5_A          187 EFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSG---DLQNVYWDVLERI  257 (286)
T ss_dssp             EEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETT---THHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecC--CeEEEEEEEEEccc---hHHHHHHHHHHHH
Confidence            99999999 99999988   5778889999998877 78999999985  79999999999985   4689999999999


Q ss_pred             HHHHHHCCCccCCCcEEEEEe
Q 005371          396 LRVISHHRARLATPIRTVQKI  416 (699)
Q Consensus       396 l~~~~e~GIe~a~P~qtv~~~  416 (699)
                      +++|+++||++|||+|++++.
T Consensus       258 ~~~~~~~gI~ip~P~~~v~~~  278 (286)
T 2vv5_A          258 KREFDAAGISFPYPQMDVNFK  278 (286)
T ss_dssp             HHHHHHHTCCCCCCEEEEEEE
T ss_pred             HHHHHHCCCcCCCCceEEEec
Confidence            999999999999999999864

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=1.5e-40  Score=348.49  Aligned_cols=215  Identities=18%  Similarity=0.268  Sum_probs=191.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 005371          189 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY  268 (699)
Q Consensus       189 ~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~  268 (699)
                      ....++++++++++|+++++++|..+|++++++++++|++|+++|||+|++++|++||++|+++|||++||||++    +
T Consensus        63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----~  138 (285)
T 3udc_A           63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----N  138 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----C
Confidence            457789999999999999999999999999999999999999999999999999999999999999999999999    7


Q ss_pred             CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCc
Q 005371          269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV  347 (699)
Q Consensus       269 ~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v  347 (699)
                      +++|+|++|+|++ |++|++||+.++|||+.+  ..+.|||+.. .+..+.++++| +|.++++++++++.+.+.+.+..
T Consensus       139 ~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~  214 (285)
T 3udc_A          139 GISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD  214 (285)
T ss_dssp             TEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999999 999999999999999999  4699999854 55668999999 99999999877766655444433


Q ss_pred             cccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005371          348 EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIF  417 (699)
Q Consensus       348 ~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~~  417 (699)
                      ..++ ++.+.+.++++  ++++++++||+++.+   ++.++++++++|+++|+++||++|||+|+||+..
T Consensus       215 ~~~~-~~~v~~~~~~~--s~i~~~v~~~~~~~~---~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~  278 (285)
T 3udc_A          215 LIEG-PTVLGITDMQD--SKLVIMVYAKTQPMQ---KWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR  278 (285)
T ss_dssp             BSSC-CEEEEEEEEET--TEEEEEEEEEESTTC---HHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred             cccC-cccccccccCC--CEEEEEEEEEECcch---HHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence            3333 46788999985  799999999998654   5789999999999999999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	699
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	1e-11

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 242 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 301
           N  +  ++   RPF   E++   + G  V+GTV  V  +S T +R  D + + IPN K  
Sbjct: 5   NLAAGVLLVMFRPFRAGEYV--DLGG--VAGTVLSVQIFS-TTMRTADGKIIVIPNGKII 59

Query: 302 VNVVRNLS 309
              + N S
Sbjct: 60  AGNIINFS 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	699
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.76
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	99.54
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	98.83

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.8e-19  Score=147.04  Aligned_cols=66  Identities=30%  Similarity=0.445  Sum_probs=64.3

Q ss_pred             HHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecc
Q 005371          239 IFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS  309 (699)
Q Consensus       239 ~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~S  309 (699)
                      +|+|++||++|+++|||++||||++    ++..|+|++|+|++ |++|++||+.++|||+++.++.|.|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~-T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEE----CCEEEEEEEEeceE-EEEEccCCCEEEEECHHHcCCccEECc
Confidence            6899999999999999999999999    78999999999999 999999999999999999999999997

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4.5e-14  Score=122.99  Aligned_cols=98  Identities=12%  Similarity=0.211  Sum_probs=88.6

Q ss_pred             CCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHH
Q 005371          310 QKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVK  388 (699)
Q Consensus       310 r~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr  388 (699)
                      |...+|+.+.++|+| +|+++++++   +.+++.++|.+..++ .|.|++.++++  +++.++++||+++.+   |+.++
T Consensus         1 R~~~RR~~~~i~v~y~~d~~~v~~i---l~~~~~~~~~v~~~p-~p~v~~~~~~~--s~i~~~v~~w~~~~~---~~~~~   71 (101)
T d2vv5a2           1 REPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSGD---LQNVY   71 (101)
T ss_dssp             SSSEEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETTT---HHHHH
T ss_pred             CCCceEEEEEEEEccCCCHHHHHHH---HHHHHHhChhhhccc-CchhhcccCCC--ceEEEEEEEEecchH---HHHHH
Confidence            456789999999999 999999995   778888999999988 78999999995  799999999999864   57899


Q ss_pred             HHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 005371          389 EAILLDLLRVISHHRARLATPIRTVQKI  416 (699)
Q Consensus       389 ~eL~~~Il~~~~e~GIe~a~P~qtv~~~  416 (699)
                      ++++.+|+++|+++||+||||+|+||+-
T Consensus        72 ~~l~~~I~~~l~~~gI~ip~P~~~v~~~   99 (101)
T d2vv5a2          72 WDVLERIKREFDAAGISFPYPQMDVNFK   99 (101)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCcCCCCcEEEEEe
Confidence            9999999999999999999999999853

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=7.9e-09  Score=87.35  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhh
Q 005371          158 TVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR  237 (699)
Q Consensus       158 iIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaq  237 (699)
                      ++++++|++.+++....++..++.+   .++...+++.+++++++|+++++++|+.+|++++++++++|++|+++|||+|
T Consensus        10 ~il~i~~~i~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa~Q   86 (86)
T d2vv5a3          10 AIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQ   86 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3456788888888887666655533   2445677899999999999999999999999999999999999999999998