Citrus Sinensis ID: 005373

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
MKITGNSHYPSSFPVAKALDPSSNLDLRPTRRKTRNPSLTRLRKHGAPGQRRSRPETPLLKWKVEEYREKNRKVGAEEEDDAADAGRKTRRKERKGRSVVSARTLAAGLWRLQLPENVAGGAGENLDRLGFQPGAAHAAVPFHVCCSSKGHGSESKDPLQSPSSSVSGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLEDQDSSCSPEGSAPSIKNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcHHcccccccccccccccccccHHccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccHHccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHccccccccccHHHHcccccccccHHHHHHHHHHccccccccEEEEEccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHcHHHHHHHHHHccc
mkitgnshypssfpvakaldpssnldlrptrrktrnpsltrlrkhgapgqrrsrpetpllkWKVEEYREKNrkvgaeeeddaADAGRKTrrkerkgrsvVSARTLAAGLWrlqlpenvaggagenldrlgfqpgaahaavpfhvccsskghgseskdplqspsssvsgmkngffcklepsfqfsnpamegatkwnpvclktPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLssrsinpdIQEMKEAEMLRQAAASVNIQEikeftyeppnpddifsvfedvnfgesnereiepsgayspashaskmhtvspevnvinkdnlhrhsnayvdqngdieedesgwetvshledqdsscspegsapsiknrrdsnfsgsvmewedngyegtpiteisevcsvptkslkKVSSIARLWrsgpnngdnykiitvdgtkgrlsvsngrlsngslasldrgsgngglspsdlgqwsspdsgnphvtrgmkgciewprgaqknSLKAKLLEARMESQKVQLRQVLKQKI
mkitgnshypssfpvakaldpssnldlrptrrktrnpsltrlrkhgapgqrrsrpetpllkwkveeyreknrkvgaeeeddaadagrktrrkerkgrsvvsartlaaglwrlqlpENVAGGAGENLDRLGFQPGAAHAAVPFHVCCSSKGHGSESKDPLQSPSSSVSGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQeleterrsskkklehflrkvseekaawrsrehekirafIDDLKAEIsrerknrqrieivnsklvneladakvsaKRYMQDYekerkerelIEEVCDELakeigedkaevealkresmklreevdderKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLedqdsscspegsapsiknrrdsnfsGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIArlwrsgpnngdnykIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
MKITGNSHYPSSFPVAKALDPSSNLDLRPTRRKTRNPSLTRLRKHGAPGQRRSRPETPLLKWKVEEYREKNRKVGaeeeddaadagrktrrkerkgrSVVSARTLAAGLWRLQLPENVAGGAGENLDRLGFQPGAAHAAVPFHVCCSSKGHGSESKDPLQSPSSSVSGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYekerkerelieeVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLEDQDSSCSPEGSAPSIKNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESqkvqlrqvlkqkI
*****************************************************************************************************ARTLAAGLWRLQLPENVAGGAGENLDRLGFQPGAAHAAVPFHVCC*************************GFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAAL**********************************************IRAFIDD***************EIVNSKLVNEL*****************************************************************AEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL*************************NIQEIKEFTY******DIFSVFEDV*****************************************************************************************************GYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDG*****************************************************CIE**********************************
*******************************************************************************************************TLAAGLWR*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QVLK***
********YPSSFPVAKALDPSSNLDLRPTRRKTRNPSLTR*************PETPLLKWKVEEYREK******************************SARTLAAGLWRLQLPENVAGGAGENLDRLGFQPGAAHAAVPFHVCCS*******************SGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIE****************************KNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
********************************************************TPLLK*K**************************************ART***GLWRLQLPEN************************************************************EPSF*FSNP**EGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNF**********************MHTVSPEVNVINKDNL**************EEDESGWETVSHL*****************************************TE*SEVCSV*******VSSI*RLWRSGPNNGDNYKIITVDGTKGRLSVSN*****************************S**SGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKITGNSHYPSSFPVAKALDPSSNLDLRPTRRKTRNPSLTRLRKHGAPGQRRSRPETPLLKWKVEEYREKNRKVGAEEEDDAADAGRKTRRKERKGRSVVSARTLAAGLWRLQLPENVAGGAGENLDRLGFQPGAAHAAVPFHVCCSSKGHGSESKDPLQSPSSSVSGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSEEKAAWRSREHEKIRAFxxxxxxxxxxxxxxxxxxxxxNSKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLEDQDSSCSPEGSAPSIKNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKxxxxxxxxxxxxxxxxxxxxxKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query699 2.2.26 [Sep-21-2011]
Q66GQ2623 Uncharacterized protein A no no 0.303 0.340 0.293 2e-20
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2 Back     alignment and function desciption
 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 128/215 (59%), Gaps = 3/215 (1%)

Query: 199 LKTPAEVRQIYSHMKHLDQQ-VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFL 257
           LKT  E+ ++ + +  L++Q VS +S++ AL+ EV  +R RI+EL   +++ + +L+  +
Sbjct: 193 LKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVV 252

Query: 258 RKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRY 317
           ++++EEK   +++E E++ + +  ++  +  ERK R+R E ++ K+  EL++ K S    
Sbjct: 253 KQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNC 312

Query: 318 MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM--KLREEVDDERKMLQMAEV 375
           +++ E+  K  +++E +CDE AK I   + E+  LK++++          ++ +L +AE 
Sbjct: 313 VKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAES 372

Query: 376 WREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL 410
           W +ER+QM+L        +  S ++KL  E+E FL
Sbjct: 373 WLDERMQMRLEGGDTLNGKNRSVLDKLEVEIETFL 407

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query699
255583593714 conserved hypothetical protein [Ricinus 0.987 0.966 0.708 0.0
225460985717 PREDICTED: uncharacterized protein LOC10 0.995 0.970 0.672 0.0
356569802699 PREDICTED: uncharacterized protein LOC10 0.977 0.977 0.665 0.0
297737432673 unnamed protein product [Vitis vinifera] 0.934 0.970 0.632 0.0
356524256699 PREDICTED: uncharacterized protein LOC10 0.978 0.978 0.659 0.0
297847412729 hypothetical protein ARALYDRAFT_892003 [ 0.982 0.942 0.624 0.0
356499392691 PREDICTED: uncharacterized protein LOC10 0.968 0.979 0.652 0.0
356553569690 PREDICTED: uncharacterized protein LOC10 0.974 0.986 0.641 0.0
15223613725 uncharacterized protein [Arabidopsis tha 0.984 0.948 0.612 0.0
449463264710 PREDICTED: uncharacterized protein LOC10 0.977 0.961 0.626 0.0
>gi|255583593|ref|XP_002532552.1| conserved hypothetical protein [Ricinus communis] gi|223527707|gb|EEF29813.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/723 (70%), Positives = 576/723 (79%), Gaps = 33/723 (4%)

Query: 1   MKITGNSHYPSSFP-----VAKA-LDPSSNLDLRPTRRKTRNPSLTRLRKHGAPGQRRSR 54
           MKITG  H   +FP      ++A  +P  + DL+P  R  R  + T +R+  +  + R+R
Sbjct: 1   MKITGRPHSTPTFPGNTITCSRAPQNPQPHPDLKPHHR-LRKTARTPVRRRRSRSRTRTR 59

Query: 55  PETPLLKWKVEEYREKNRKVGAEE------------EDDAADAGRKTRRKERKGRSVVSA 102
           P+TP LKWK++     N   G +             E+     GRK RR  R     VSA
Sbjct: 60  PDTPFLKWKIDNNNNNNNDKGVQVHRHDDDDDGDVVEEKLDSGGRKGRR--RFSSRAVSA 117

Query: 103 RTLAAGLWRLQLPENV-AGGAGE---NLDRLGFQPGAAHAAVPFHVCCSSKGHGSESKDP 158
           R LAAGLWRLQLPE V + G GE   + DRLGFQPGA HA + F    S K +G E KDP
Sbjct: 118 RKLAAGLWRLQLPETVVSAGHGERRRSRDRLGFQPGAGHADISFLPYHSGKTNGFEVKDP 177

Query: 159 LQSPSSSVSGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQ 218
           LQSPSS VS MKN FFCK+EPSFQFSN AMEGATKW+PVCL+T  EVRQIYS MK LD Q
Sbjct: 178 LQSPSS-VSDMKNRFFCKVEPSFQFSNTAMEGATKWDPVCLETIDEVRQIYSQMKRLDHQ 236

Query: 219 VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF 278
           VSAVSMV+ALEAE+EQAR RIQELE ERR+SKKK+EHFL+KVSEE+ AWRSREHEKIRAF
Sbjct: 237 VSAVSMVSALEAELEQARARIQELEAERRTSKKKMEHFLKKVSEERVAWRSREHEKIRAF 296

Query: 279 IDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDEL 338
           IDD+K ++SRERKNRQR+EIVNSKLVNELADAKVSAKR+MQDYEKERK RELIEEVCDEL
Sbjct: 297 IDDIKGDLSRERKNRQRLEIVNSKLVNELADAKVSAKRFMQDYEKERKARELIEEVCDEL 356

Query: 339 AKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQ 398
           AKEIG+DKAEVEA KRESMKLREEVD+ERKMLQMAEVWREERVQMKLVDAKVA+E KYSQ
Sbjct: 357 AKEIGQDKAEVEAFKRESMKLREEVDEERKMLQMAEVWREERVQMKLVDAKVALEAKYSQ 416

Query: 399 MNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFE 458
           MN+LVA+LE FL SR+  PD++EM+EAE L QAAASV+ Q++KEFTYEPPNPDDIFSVFE
Sbjct: 417 MNRLVADLETFLRSRTATPDLKEMREAESLVQAAASVDFQDVKEFTYEPPNPDDIFSVFE 476

Query: 459 DVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDE 518
           +VN GE NEREIEP  AYSPASHASK+HTVSPE+NVINK+  HRHS+A+ DQNGDIEEDE
Sbjct: 477 EVNCGEPNEREIEPCVAYSPASHASKIHTVSPEINVINKNGNHRHSDAFYDQNGDIEEDE 536

Query: 519 SGWETVSHLEDQDSSCSPEGSAPSI--KNRRDSNFSGSVMEWEDNGYEGTPITEISEVCS 576
           SGWETVSHLEDQ SS SPEGS PS+  KN RDSN SGS  EWE+N  + T ITEI+E+CS
Sbjct: 537 SGWETVSHLEDQGSSYSPEGSVPSVNNKNHRDSNVSGSGTEWEENACDETSITEITELCS 596

Query: 577 VPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNG 636
           VP +  KKVSSIA+LWRSG   GDNYKII+VDG  GRL  SNGR SNG + S DRGSG G
Sbjct: 597 VPIRQYKKVSSIAKLWRSG---GDNYKIISVDGMNGRL--SNGRKSNGVIVSPDRGSGKG 651

Query: 637 GLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLK 696
           GLSP   GQWSSPDSGNPH+TRGMKGCIEWPRGAQKNSLKAKL+EARMESQKVQLR VLK
Sbjct: 652 GLSPDLTGQWSSPDSGNPHITRGMKGCIEWPRGAQKNSLKAKLMEARMESQKVQLRHVLK 711

Query: 697 QKI 699
           QKI
Sbjct: 712 QKI 714

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460985|ref|XP_002280336.1| PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569802|ref|XP_003553085.1| PREDICTED: uncharacterized protein LOC100801304 [Glycine max] Back     alignment and taxonomy information
>gi|297737432|emb|CBI26633.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524256|ref|XP_003530746.1| PREDICTED: uncharacterized protein LOC100795752 [Glycine max] Back     alignment and taxonomy information
>gi|297847412|ref|XP_002891587.1| hypothetical protein ARALYDRAFT_892003 [Arabidopsis lyrata subsp. lyrata] gi|297337429|gb|EFH67846.1| hypothetical protein ARALYDRAFT_892003 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356499392|ref|XP_003518525.1| PREDICTED: uncharacterized protein LOC100799140 [Glycine max] Back     alignment and taxonomy information
>gi|356553569|ref|XP_003545127.1| PREDICTED: uncharacterized protein LOC100795388 [Glycine max] Back     alignment and taxonomy information
>gi|15223613|ref|NP_175481.1| uncharacterized protein [Arabidopsis thaliana] gi|9454546|gb|AAF87869.1|AC012561_2 Unknown protein [Arabidopsis thaliana] gi|12322324|gb|AAG51180.1|AC079279_1 unknown protein [Arabidopsis thaliana] gi|332194455|gb|AEE32576.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449463264|ref|XP_004149354.1| PREDICTED: uncharacterized protein LOC101221647 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query699
TAIR|locus:2007996725 AT1G50660 [Arabidopsis thalian 0.969 0.935 0.586 3.3e-205
TAIR|locus:2092319673 AT3G20350 [Arabidopsis thalian 0.944 0.980 0.488 1.1e-149
TAIR|locus:2080792622 AT3G11590 [Arabidopsis thalian 0.502 0.564 0.308 3.2e-41
TAIR|locus:2160477623 AT5G41620 "AT5G41620" [Arabido 0.592 0.664 0.250 1.6e-20
TAIR|locus:2027402247 AT1G11690 "AT1G11690" [Arabido 0.227 0.643 0.344 1.7e-20
TAIR|locus:2024568593 AT1G64180 "AT1G64180" [Arabido 0.523 0.617 0.245 8.4e-18
TAIR|locus:2176387481 AT5G22310 "AT5G22310" [Arabido 0.406 0.590 0.292 8.9e-17
TAIR|locus:2062877468 AT2G46250 "AT2G46250" [Arabido 0.452 0.675 0.259 8.6e-13
UNIPROTKB|Q8NEH6495 MNS1 "Meiosis-specific nuclear 0.326 0.460 0.220 4.8e-07
UNIPROTKB|F1PWW7495 MNS1 "Uncharacterized protein" 0.326 0.460 0.212 1e-06
TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1985 (703.8 bits), Expect = 3.3e-205, P = 3.3e-205
 Identities = 422/720 (58%), Positives = 521/720 (72%)

Query:     1 MKITGNSHYPSSFPVAKALDP---SSNLDLRP-------TRRKTRNPSLTRLRKHGAPGQ 50
             MK+TG  +  ++ P  ++ D    S   DLR        T+R+ RNPSLTR R+ G  G 
Sbjct:     1 MKVTGKPYSTATLPAFES-DKNLFSHGPDLRAIQRATTVTKRRARNPSLTRQRRSGPSGG 59

Query:    51 RRSRPETPLLKWKVEEY-REKNRKVGXXXXXXXXXXXXXXXXXXXXX----XSVVSARTL 105
             RRSRPETPLLKWKVE+  +E++  V                             VS R L
Sbjct:    60 RRSRPETPLLKWKVEDRNKERSGVVEDDDYEDDNHQVARSETTRRKDRRKIARPVSVRKL 119

Query:   106 AAGLWRLQLPE-NVAGGAGENLDRLGFQPGAAHAAVPFHVCCSSKGHGSESKDPLQSPSS 164
             AAGLWRLQ+P+ + +GG  +  + LGFQ    +  VP+    S K  G +S    Q+PS+
Sbjct:   120 AAGLWRLQVPDASSSGGERKGKEGLGFQGNGGYMGVPYLYHHSDKPSGGQSNKIRQNPST 179

Query:   165 SVSGMKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSM 224
              ++  KNGF CKLEPS  F + AMEGATKW+PVCL T  EV QIYS+MK +DQQV+AVS+
Sbjct:   180 -IATTKNGFLCKLEPSMPFPHSAMEGATKWDPVCLDTMEEVHQIYSNMKRIDQQVNAVSL 238

Query:   225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKA 284
             V++LEAE+E+A  RI++LE+E+RS KKKLE FLRKVSEE+AAWRSREHEK+RA IDD+K 
Sbjct:   239 VSSLEAELEEAHARIEDLESEKRSHKKKLEQFLRKVSEERAAWRSREHEKVRAIIDDMKT 298

Query:   285 EISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYXXXXXXXXXXXXVCDELAKEIGE 344
             +++RE+K RQR+EIVN KLVNELAD+K++ KRYMQDY            VCDELAKEIGE
Sbjct:   299 DMNREKKTRQRLEIVNHKLVNELADSKLAVKRYMQDYEKERKARELIEEVCDELAKEIGE 358

Query:   345 DKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVA 404
             DKAE+EALKRESM LREEVDDER+MLQMAEVWREERVQMKL+DAKVA+E++YSQMNKLV 
Sbjct:   359 DKAEIEALKRESMSLREEVDDERRMLQMAEVWREERVQMKLIDAKVALEERYSQMNKLVG 418

Query:   405 ELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGE 464
             +LE+FL SR I  D++E++EAE+LR+ AASVNIQEIKEFTY P NPDDI++VFE++N GE
Sbjct:   419 DLESFLRSRDIVTDVKEVREAELLRETAASVNIQEIKEFTYVPANPDDIYAVFEEMNLGE 478

Query:   465 SNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETV 524
             +++RE+E S AYSP SH SK+HTVS + N++NK    RHS+AY  QNGDIEED+SGWETV
Sbjct:   479 AHDREMEKSVAYSPISHDSKVHTVSLDANMMNKKG--RHSDAYTHQNGDIEEDDSGWETV 536

Query:   525 SHLEDQDSSCSPEGSAPSIKNR----RDSNFSGSVME-----WEDNGYEGTPITEISEVC 575
             SHLE+Q SS SP+GS PS+ N+    R SN S    E     W+D     TP TEISEVC
Sbjct:   537 SHLEEQGSSYSPDGSIPSVNNKNHNHRHSNASSGGTESLGKVWDDTM---TPTTEISEVC 593

Query:   576 SVPTKSLKKVSSIARLWRS-GPNNGD---NYKIITVDGTKGRLSVSNGRLSNGSLASLDR 631
             S+P +S KKVSSIA+LWRS G +NGD   NYK+I+++G  G   VSNGR S+  + S DR
Sbjct:   594 SIPRRSSKKVSSIAKLWRSTGASNGDRDSNYKVISMEGMNGG-RVSNGRKSSAGMVSPDR 652

Query:   632 GSGNGGLSPS-DL-GQW-SSPDSGN-PHVTRG-MKGCIEWPRGAQKNSLKAKLLEARMES 686
              S  GG SP  DL GQW SSP+S N PHV RG MKGCIEWPRGAQK+SLK+KL+EAR+ES
Sbjct:   653 VSSKGGFSPMMDLVGQWNSSPESANHPHVNRGGMKGCIEWPRGAQKSSLKSKLIEARIES 712
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027402 AT1G11690 "AT1G11690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NEH6 MNS1 "Meiosis-specific nuclear structural protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWW7 MNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-08
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 2e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 2e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 3e-04
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 3e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 4e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
PRK10966407 PRK10966, PRK10966, exonuclease subunit SbcD; Prov 9e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.001
pfam13166713 pfam13166, AAA_13, AAA domain 0.001
pfam05557 722 pfam05557, MAD, Mitotic checkpoint protein 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.004
TIGR026801353 TIGR02680, TIGR02680, TIGR02680 family protein 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 28/274 (10%)

Query: 204 EVRQIYSHMKHLDQQVSAVSM--------VAALEAEVEQARTRIQELETER---RSSKKK 252
           E+R +   ++ L +Q+  +          +AALE E+EQ ++R++ELE E        ++
Sbjct: 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755

Query: 253 LEHFLRKVSEEKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 306
           L+  L ++ EE  +          E E++      L+ E+    +  +  E     L  E
Sbjct: 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815

Query: 307 LADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDE 366
           L   +   +R  Q+ E+  +E E +EE  DEL +E+ E + E+E LK E  +L  E ++ 
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 367 RKMLQMAEVWREER------VQMKLVDAKVAVEQKYSQMNKLVAELEAFLS-SRSINPDI 419
              L+  E  +EE       ++ +L + K  +E+   ++ +L A+LE        +  ++
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935

Query: 420 QEMKEAEMLRQAAASVNIQEIKEFT--YEPPNPD 451
           +E  E E   +      I+ ++E      P N  
Sbjct: 936 EE--EYEDTLETELEREIERLEEEIEALGPVNLR 967

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|182871 PRK10966, PRK10966, exonuclease subunit SbcD; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 699
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.71
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.62
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.98
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.96
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.74
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.69
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.67
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.63
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.61
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.57
PF00038312 Filament: Intermediate filament protein; InterPro: 96.46
PF00038312 Filament: Intermediate filament protein; InterPro: 96.32
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.29
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 96.27
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.24
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.16
KOG09331174 consensus Structural maintenance of chromosome pro 96.08
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.01
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.76
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 95.75
PF05701522 WEMBL: Weak chloroplast movement under blue light; 95.52
PRK02224 880 chromosome segregation protein; Provisional 95.46
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.16
PHA02562562 46 endonuclease subunit; Provisional 94.87
PRK09039343 hypothetical protein; Validated 94.8
PRK02224 880 chromosome segregation protein; Provisional 94.76
KOG0971 1243 consensus Microtubule-associated protein dynactin 94.35
PRK11637428 AmiB activator; Provisional 94.1
KOG09331174 consensus Structural maintenance of chromosome pro 94.03
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 93.76
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.52
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 93.4
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 93.35
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.1
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 92.99
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.99
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 92.8
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 92.62
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.25
PRK03918 880 chromosome segregation protein; Provisional 92.23
PF09727192 CortBP2: Cortactin-binding protein-2; InterPro: IP 91.76
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 91.72
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 91.68
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.44
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.39
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 91.32
PF10174775 Cast: RIM-binding protein of the cytomatrix active 91.27
PRK11637428 AmiB activator; Provisional 91.25
KOG0963629 consensus Transcription factor/CCAAT displacement 90.99
KOG0964 1200 consensus Structural maintenance of chromosome pro 90.91
PF06705247 SF-assemblin: SF-assemblin/beta giardin 90.87
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 90.8
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 90.78
KOG1103561 consensus Predicted coiled-coil protein [Function 90.76
PF10174775 Cast: RIM-binding protein of the cytomatrix active 90.69
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 90.59
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 90.56
PF10186302 Atg14: UV radiation resistance protein and autopha 90.31
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 90.15
KOG4787852 consensus Uncharacterized conserved protein [Funct 89.82
TIGR006061311 rad50 rad50. This family is based on the phylogeno 89.46
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 89.38
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 89.37
PRK04863 1486 mukB cell division protein MukB; Provisional 89.31
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 89.09
PRK03918 880 chromosome segregation protein; Provisional 88.97
PF05615139 THOC7: Tho complex subunit 7; InterPro: IPR008501 88.91
PF09731582 Mitofilin: Mitochondrial inner membrane protein; I 88.83
PRK04778569 septation ring formation regulator EzrA; Provision 88.81
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 88.68
KOG05791187 consensus Ste20-like serine/threonine protein kina 88.63
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 87.79
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 87.34
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 87.23
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 87.09
KOG0964 1200 consensus Structural maintenance of chromosome pro 86.62
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 86.47
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 86.37
PF10186302 Atg14: UV radiation resistance protein and autopha 86.34
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 86.1
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 85.97
COG2433652 Uncharacterized conserved protein [Function unknow 85.92
PRK04863 1486 mukB cell division protein MukB; Provisional 85.39
COG4942420 Membrane-bound metallopeptidase [Cell division and 85.38
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 85.03
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 84.6
PF05010207 TACC: Transforming acidic coiled-coil-containing p 84.32
PF0864796 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395 84.1
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 83.67
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 83.64
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 82.78
PF00901508 Orbi_VP5: Orbivirus outer capsid protein VP5; Inte 82.57
KOG4807593 consensus F-actin binding protein, regulates actin 82.31
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 82.03
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 81.83
PF06705247 SF-assemblin: SF-assemblin/beta giardin 81.58
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 81.33
KOG0993542 consensus Rab5 GTPase effector Rabaptin-5 [Intrace 81.32
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 80.92
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 80.85
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 80.79
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 80.73
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 80.73
cd07651236 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology 80.63
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 80.56
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 80.09
PRK04778569 septation ring formation regulator EzrA; Provision 80.03
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information 
Probab=97.71  E-value=0.12  Score=59.33  Aligned_cols=132  Identities=21%  Similarity=0.266  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cHHHHHHHHHhhHHHHhhh-hhhHHH
Q 005373          296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIE-EVCDELAKEIGE----DKAEVEALKRESMKLREEV-DDERKM  369 (699)
Q Consensus       296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE-~vCdELAkeI~e----dkaEVe~LKres~k~reE~-EeER~M  369 (699)
                      ++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+|| .+-.+++    ..+|...|.+.....++++ +-.+++
T Consensus       302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el  380 (546)
T PF07888_consen  302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL  380 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4455567888888888777778888776664322222 2232 2223333    3334444444444444555 345566


Q ss_pred             HHHHHHhHHHhhh----------------hhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHh
Q 005373          370 LQMAEVWREERVQ----------------MKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAA  433 (699)
Q Consensus       370 LqmAEvWREERVQ----------------MKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~~rqs~e  433 (699)
                      .++++...|||.+                +.|+|++-.|.|+.+.+..++-|=|-+...+.     ..+++.+.|++-+.
T Consensus       381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ-----eL~~yi~~Le~r~~  455 (546)
T PF07888_consen  381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ-----ELLEYIERLEQRLD  455 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            6667766677664                55666666666666666666666666666553     23455555555444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1) Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4787 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus [] Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 6e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-04
2xs1_A704 Programmed cell death 6-interacting protein; prote 4e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 35/206 (16%), Positives = 86/206 (41%), Gaps = 15/206 (7%)

Query: 217  QQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS--EEKAAWRSREHEK 274
            ++V+A   +  +E ++     +  +L  ER+  ++++      ++  EEKA   ++   K
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 275  IRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKV---SAKRYMQDYEKE--RKERE 329
              + I +L+  + +E K+RQ +E +  KL  E +D        +  + + + +  +KE E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 330  L--IEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWRE------ERV 381
            L       ++   +      ++  L+     L+E+++ E+     AE  +       E +
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 382  QMKLVDAKVAVEQKYSQMNKLVAELE 407
            + +L D       +         + +
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKDDD 1182
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query699
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 97.29
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 96.65
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 96.31
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.18
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.26
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.02
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.21
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 93.73
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.73
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.7
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.0
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 91.9
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 91.78
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 90.81
2hg7_A110 Phage-like element PBSX protein XKDW; dimer, GFT s 89.15
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 88.58
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.35
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 87.26
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 87.24
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 86.72
2w6b_A56 RHO guanine nucleotide exchange factor 7; X-RAY cr 84.97
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 84.24
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 84.12
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 83.62
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
Probab=97.29  E-value=0.013  Score=56.11  Aligned_cols=130  Identities=16%  Similarity=0.210  Sum_probs=98.7

Q ss_pred             hHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 005373          202 PAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFID  280 (699)
Q Consensus       202 s~ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~  280 (699)
                      |+.|..-+|+.- |+|.       +..++.+|..++.+|++|+..+..    ++.+...    +        .-+.+-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~----~--------~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKRE----L--------SDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTH----H--------HHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----H--------hhhhHHHH
Confidence            366777777765 6665       678889999999999999986643    3333222    1        23566677


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 005373          281 DLKAEISRERKNRQRIEIVNSKLVNELADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR  354 (699)
Q Consensus       281 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss-~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr  354 (699)
                      .|.++|..|+..|..+|....++-.||-+.-.| |..|=+=.-.+|+.+..+|.=-+.|-+.+++-+.-++.|-.
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999997655 55555556678999999998888888888877666665543
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Back     alignment and structure
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query699
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 93.25
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 80.56
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=2.8  Score=37.77  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 005373          278 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM  357 (699)
Q Consensus       278 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~  357 (699)
                      +++.++.-+.+-++.|+.+...-.|+.++|......+.++.+.|..--+.-+-+...+..+.....--+.+++.++.+..
T Consensus        98 i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~  177 (288)
T d2efla1          98 IIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQ  177 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHH
Confidence            34555555666677888888888899999998888888888888766555555555555555666666777888777777


Q ss_pred             HHHhhhhh
Q 005373          358 KLREEVDD  365 (699)
Q Consensus       358 k~reE~Ee  365 (699)
                      +...++++
T Consensus       178 ~~~~~~~~  185 (288)
T d2efla1         178 IRHQMAED  185 (288)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666644
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure