Citrus Sinensis ID: 005378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
Protein Sequence
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcHHHHHHHHHHcHHHHHHHHHHHHHHccccccHcccccccccccccccccccccccccccccHHHccccccccccccccccHcccccHHHccHHHHHHcccccccccccccccHHHHHcccccccccccccEEccHccHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELAdeqsdfqtpasngqgsqAKKIKSRIKAQRRHSADESLKINDTAREQantqaspvdvtpnkdtATLAVEKEtittgktqkngeqqqtnerdapsiplteqskdmskhdadrveipetftdldtatpngeilnendsdvhlnhppsplppkemgivnedriddagqitksadadaplkidskiqavdppvnsesslkdaDVKVETLSNKRKQqalkaddpptkeqdQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKrgqkkspeEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERsrvsrrswssweedaemksleplplhhrhIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAEsmglttsnlp
Flexible Loop (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELadeqsdfqtpasngqgsqakKIKSRIKAqrrhsadeslkindtareqantqaspvdvtpnkdTATLAVEketittgktqkngeqqqtnerdapsiplteqskdmskhdaDRVEIPetftdldtatpNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKsadadaplkidskiqavdppvnsesslkdaDVKVETLSNKrkqqalkaddpptkeqDQLDEAQGLLKTtistgqskeaRLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEEraahnatkmaAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRgqkkspeeANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKrdaehysreeHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLqevqseaersrvsrrswssweeDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAEsmglttsnlp
Low Complexity Region (SEG)
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQalreelasverraeeeraaHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQevqseaersrvsrrswssweedaeMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIllfylvfvhlflmyllhRLQEQADNFAAREVAESMGLTTSNLP
Disordered region (IsUnstruct)
****LKAAEDLFEVVDRRAKLVVN************************************************************************************************************************************************************************************************************************************************************VCA********************************************************************************************************************************************************************************AMLEVECA************************************************************************************YRELTDLLYYKQT**********************************************************HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA********************
Disordered Region (DISOPRED)
***WLKAAEDLF**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQ****************LT*****
Disordered Region (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELADEQS*******************************SLKINDTAR************TPNKDTATLAVEKETITTG***************APSIPLT**********ADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAV***********DADVKVETLSN********************DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA***************AIQAWQ****************LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR*************************EMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAES*********
Disordered Region (DISPRO)
**SWLKAAEDLFEVVDRRAKLVVNELADE*****************************************************************************************************************************************************G**N*DRIDDAGQITKSADADA*LKIDSKIQA*****N**SSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS***************LEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREV*ES*GLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxHNATKMAAMEREVELEHRAAEASMALARIQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPEEANQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEHMELEKRYRELTDLLYYKQTQLETMASExxxxxxxxxxxxxxxxxxxxxxxxxxxxRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	699	2.2.26 [Sep-21-2011]
Q8S8N9	707	Golgin candidate 1 OS=Ara	yes	no	0.955	0.944	0.612	0.0
Q5JLY8	709	Golgin-84 OS=Oryza sativa	yes	no	0.957	0.943	0.565	0.0
Q6GNT7	722	Golgin subfamily A member	N/A	no	0.562	0.544	0.272	5e-18
Q9QYE6	729	Golgin subfamily A member	yes	no	0.486	0.466	0.268	1e-15
Q8TBA6	731	Golgin subfamily A member	yes	no	0.509	0.487	0.272	2e-15
Q3ZU82	728	Golgin subfamily A member	yes	no	0.278	0.267	0.294	5e-15
B0F9L7	668	Golgin candidate 2 OS=Ara	no	no	0.361	0.378	0.275	2e-13
Q7SXE4	760	Golgin subfamily A member	yes	no	0.214	0.197	0.301	1e-12
Q8SZ63	516	Golgin-84 OS=Drosophila m	yes	no	0.178	0.242	0.291	3e-08

>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/718 (61%), Positives = 532/718 (74%), Gaps = 50/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQA--IQAWQDEVERARQGQRDAEN 510
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ   IQAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 511 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 571 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 630
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 643

Query: 631 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 688
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 644 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 698

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/739 (56%), Positives = 503/739 (68%), Gaps = 70/739 (9%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIK----------- 49
           MASWLK AEDL EVVDRRAK+V  EL+DEQS  Q   S+ Q  QAKK K           
Sbjct: 1   MASWLKVAEDLLEVVDRRAKIVATELSDEQSSPQPSGSSSQEGQAKKGKLREKGPLKLAT 60

Query: 50  ----SRIKAQR----RHSADESLKINDT-----------AREQANTQASPVDVTPNKDTA 90
               SR  AQ+    R    E +KI                  +    S  DV    D  
Sbjct: 61  GDAGSRTAAQKERKSRQPPRERIKIEKIRPSPPVDSSSVDASASKPDVSSSDVKGLDDDG 120

Query: 91  TLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTA 150
               E++ +   K     E   T         +  QS + S  DA  V        +D A
Sbjct: 121 GAEKEEKVVVDRKNDIGAEVVDTE--------VEVQSTERSAEDAAIV--------VDGA 164

Query: 151 TPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSAD---ADAPLKIDSK 207
             +G      +S      P  P    E  I N+D      +I  + +    D+ +++  +
Sbjct: 165 ADSGNSEGAAESSA----PSVPDERCEPSISNQD-----AEIVSAVNLEEKDSAMEVIHE 215

Query: 208 IQAVDPPVNSESSLKDADVKVETLSNK----RKQQALKADDPPTKEQDQLDEAQGLLKTT 263
               + P +++ S K  D K E LS+       QQ  K D    K+QDQL+EA+GLLK  
Sbjct: 216 KNIKEVP-DTQVSGKSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGLLKNV 274

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           + TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV ERE   SYEA +KQL+QELS+ 
Sbjct: 275 VKTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVQEREKCSSYEAHMKQLQQELSMS 334

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
           + E ++ ESN+ +AL AKN+EIE+LV S+D+ KK+AA SE  LA+LQ +M+ + RNRELT
Sbjct: 335 RVEGSRAESNMVDALTAKNAEIESLVKSLDSWKKKAAASEEKLAALQEDMDGLKRNRELT 394

Query: 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443
           ETR+IQALREELA+VERRAEEER AHNATKMAA+EREVELEHRA EAS ALARIQR AD+
Sbjct: 395 ETRVIQALREELATVERRAEEERIAHNATKMAAVEREVELEHRAVEASNALARIQRAADQ 454

Query: 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI--QAWQDEVERA 501
            +++A ELE KVA+LEVECA+LQQELQ+MEAR +R QKK  EEANQ I  QAWQ+EVERA
Sbjct: 455 SSSRAMELEHKVAVLEVECASLQQELQEMEARNRRAQKKPSEEANQVIQMQAWQEEVERA 514

Query: 502 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQ 561
           RQ QR+AE K+SSLEAE+QKMRVEMA MKRDAEHYSR+EH+ELEKRYRELTDLLY+KQTQ
Sbjct: 515 RQSQREAETKISSLEAELQKMRVEMAGMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQ 574

Query: 562 LETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRH 621
           LE+MASEKAA EFQLEK + +  EVQ EAERSRV+RRS S+WEEDA++K+LEPLPLHHRH
Sbjct: 575 LESMASEKAALEFQLEKSIKQFHEVQMEAERSRVARRSASAWEEDADIKALEPLPLHHRH 634

Query: 622 IAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADN 681
           +A A+ QLQKAAKLLDSGAVRATRFLWR+P+AR+ LLFYLVFVHLFLMYL+HRLQ    +
Sbjct: 635 MATANQQLQKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQ----D 690

Query: 682 FAAREVAESM-GLTTSNLP 699
           FA+RE   +M GL  S+LP
Sbjct: 691 FASREGPTAMGGLANSDLP 709

May be involved in maintaining Golgi structure and in intra-Golgi transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 214/436 (49%), Gaps = 43/436 (9%)

Query: 253 LDEAQGLLKTTISTGQSKEARLARVCA----GLSSRLQEYKSENAQLEELLVAERELSRS 308
           L EA  LLK+   T +S +   +R+      G S   Q  ++   +L E   AE  L R 
Sbjct: 299 LQEADQLLKSRTETLESLQIEKSRILQDQSEGSSIHNQALQTMQERLRE---AESTLIRE 355

Query: 309 YEARIKQLEQELSVYKSEVTKVESNLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLA 367
            E+  KQ++ E +   S++     NLAEA + A+   +E    S D L++Q   S+  L 
Sbjct: 356 QES-YKQIQNEFATRLSKIEAERQNLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLD 413

Query: 368 SLQMNMESIMRNRELTETRMIQALREELASV-ERRAEEERAAHNATKMAA--------ME 418
           SL+  M    +      TR++Q+  + + S+ E    E   +H+A+ M          M+
Sbjct: 414 SLKQEMADYKQK----ATRILQSKEKLINSLKEGSGIEGLDSHSASTMELEEMRHERDMQ 469

Query: 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478
           RE E++    +     A +Q +  ++ ++A    +++  +  + AT Q+  Q++EA L+R
Sbjct: 470 RE-EIQKLMGQIQQLKAELQDVETQQVSEAESAREQLQDVHEQFATQQRAKQELEAELER 528

Query: 479 GQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR 538
            QK       Q  Q  Q+++ + +      + ++   E E+QK+R ++       +  S 
Sbjct: 529 -QK-------QEFQYIQEDLYKTKNT---LQGRIRDREDEIQKLRNQLTN-----KALSS 572

Query: 539 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRR 598
               ELE R  +LT+ L  KQT LE +++EK +  +QLE+  ++L+ VQ  +        
Sbjct: 573 SSQTELENRLHQLTETLIQKQTMLENLSTEKNSLVYQLERLEHQLKNVQGSSLNGTSINM 632

Query: 599 SWSSWEEDAEMKSLEPLPLHHR--HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARII 656
           S     E A M+++ P+       ++AG   +++KAA  +D  ++R   FL RYPIAR+ 
Sbjct: 633 SVIESNEGARMRNV-PVLFSDSDPNVAGMYGRVRKAATSIDQFSIRLGIFLRRYPIARVF 691

Query: 657 LLFYLVFVHLFLMYLL 672
           ++ Y+  +HL++M +L
Sbjct: 692 IIIYMALLHLWVMIVL 707

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Xenopus laevis (taxid: 8355)

>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 186/402 (46%), Gaps = 62/402 (15%)

Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
           E L  A+  L R  E+  KQ++ E +   +++     NLAEA+     +       +D L
Sbjct: 350 ERLHEADATLKREQES-YKQMQSEFAARLNKMEVDRQNLAEAVTLAERKYSEEKKKVDEL 408

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q  L   +L S +  +    +      TR++Q+ +E+L +  +         ++T  +
Sbjct: 409 QQQVKLHRASLESAKQELVDYKQK----ATRILQS-KEKLINSLKEGSSFEGLESST-AS 462

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
           +ME E EL H   E  M    IQ++        G++ Q           L+ ELQDMEA+
Sbjct: 463 SMELE-ELRH---EKEMQKEEIQKLM-------GQMHQ-----------LRSELQDMEAQ 500

Query: 476 LKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 535
               Q    E A + +Q  QD++ + R  +++ E +L  ++ E + M  ++   K   + 
Sbjct: 501 ----QVSEAESAREQLQDLQDQIAKQRTSKQELETELERMKQEFRYMEEDLHRTKNTLQS 556

Query: 536 Y--SREEHM------------------ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 575
               REE +                  ELE R  +LT+ L  KQT LE++++EK +  FQ
Sbjct: 557 RIKDREEEIQKLRNQLTNKTLSNSSQSELESRLHQLTETLIQKQTMLESLSTEKNSLVFQ 616

Query: 576 LEKEMNRL-QEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHR----HIAGASVQLQ 630
           LE    RL Q+V S +           S  +  E   L  +P+       ++AG   +++
Sbjct: 617 LE----RLEQQVHSASSGPNSGSAINMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVR 672

Query: 631 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 672
           KAA  +D  ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 673 KAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 714

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Mus musculus (taxid: 10090)

>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 187/386 (48%), Gaps = 30/386 (7%)

Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
           E L  A+  L R  E+  KQ++ E +   ++V     NLAEA+     +       +D L
Sbjct: 352 ERLHEADATLKREQES-YKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDEL 410

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q  L + NL S +  +    +      TR++Q+  + + S++  +  E    +++  +
Sbjct: 411 QQQVKLYKLNLESSKQELIDYKQK----ATRILQSKEKLINSLKEGSGFE--GLDSSTAS 464

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
           +ME E EL H   E  M    IQ++  +      EL+   A    E  + +++LQD+  +
Sbjct: 465 SMELE-ELRH---EKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQ 520

Query: 476 LKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSL----EAEVQKMRVEMAAMKR 531
           +  GQK S +E    ++  + E     +     +N L S     + E+QK+R ++     
Sbjct: 521 IA-GQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTN--- 576

Query: 532 DAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL-QEVQSEA 590
             +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE    RL Q++ S +
Sbjct: 577 --KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLE----RLEQQMNSAS 630

Query: 591 ERSRVSRRSWSSWEEDAEMKSLEPLPLHHR----HIAGASVQLQKAAKLLDSGAVRATRF 646
             S        S  ++ E   L  +P+       ++AG   +++KAA  +D  ++R   F
Sbjct: 631 GSSSNGSSINMSGIDNGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIF 690

Query: 647 LWRYPIARIILLFYLVFVHLFLMYLL 672
           L RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 691 LRRYPIARVFVIIYMALLHLWVMIVL 716

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Homo sapiens (taxid: 9606)

>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 43/238 (18%)

Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSL--------- 515
           L+ ELQDMEA+    Q    E A + +Q  QD++ + R  +++ E +L  +         
Sbjct: 489 LRSELQDMEAQ----QVSEAESAREQLQDLQDQIAKQRASKQELETELDRMKQEFHYVEE 544

Query: 516 ----------------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 559
                           E E+QK+R ++       +  S     ELE R  +LT+ L  KQ
Sbjct: 545 DLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELESRLHQLTETLIQKQ 599

Query: 560 TQLETMASEKAAAEFQLEKEMNRL-QEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLH 618
           T LE++++EK +  FQLE    RL Q++ S A           S  +  E   L  +P+ 
Sbjct: 600 TLLESLSTEKNSLVFQLE----RLEQQLHSAATGPSSGSSINMSGVDSGEGTRLRNVPVL 655

Query: 619 HR----HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 672
                 ++AG   +++KAA  +D  ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 656 FNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 713

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Rattus norvegicus (taxid: 10116)

>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 26/279 (9%)

Query: 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVE 461
           A+ E+  HN T+M  + R   LE   AE + +LA  Q+  + +  +   L+Q+V + E  
Sbjct: 379 ADLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKEST 438

Query: 462 CATLQQELQDMEAR---LK-----RGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLS 513
              L++   ++  R   LK     RG K   +     I    D++ R        ++K +
Sbjct: 439 LEELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLTDKIGRL-------QDKAT 491

Query: 514 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 573
            LEA+++ MR E+            E  +EL++R  +LTD L  KQ+Q+E ++SEKA   
Sbjct: 492 KLEADIEMMRKEL--------EEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKATIL 543

Query: 574 FQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAA 633
           F++E  ++RL E       +  S +   +   D E+   +  P     I      L    
Sbjct: 544 FRIEA-VSRLIEENKGMSATEASSQDLEA--GDWELSGSKFKPAFQDKIRSGKKHLGWLV 600

Query: 634 KLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 672
             L++  +  T FL R P A+I  + YLV +HL+++Y+L
Sbjct: 601 MQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYIL 639

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 516 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 575
           E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE + +EK +  FQ
Sbjct: 594 EDEIQKLRNQLTN-----KALSNSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQ 648

Query: 576 LEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASV--QLQKAA 633
           LE+   +L+ +Q    ++  S  + ++ E     +   P+        G  V  +++KAA
Sbjct: 649 LERLEQQLKSLQ--GGQNSASHINMAAMEGPGARQRNTPILFSDGDGPGTGVYGKVRKAA 706

Query: 634 KLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 672
             +D  ++R   FL RYP+AR+ ++ Y+  +HL++M +L
Sbjct: 707 STIDRFSIRLGIFLRRYPMARVFVIIYMALLHLWVMIVL 745

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Danio rerio (taxid: 7955)

>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 543 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE----VQSEAERSRVSRR 598
           + E R + LT  L  +Q+ LE + SE+ A   Q EK   +LQ+    V+ E++R   SR 
Sbjct: 379 DYETRLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGS-SRH 437

Query: 599 SWSSWEEDAEMKS---LEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
           +  +  +D + +    + P P  +R     + + ++A +  DS  +R   FL RYP+ R+
Sbjct: 438 TMLNSTDDVKAQFPLLMHPSPFDNR----VARRFKRALRQADSMGIRVGTFLRRYPMMRV 493

Query: 656 ILLFYLVFVHLFLMYLL 672
            ++ Y+  +HL++M++L
Sbjct: 494 SVIVYVALLHLWVMFVL 510

May be involved in maintaining Golgi structure and in intra-Golgi transport.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
255546349	717	Golgin-84, putative [Ricinus communis] g	0.998	0.973	0.715	0.0
297738766	712	unnamed protein product [Vitis vinifera]	0.998	0.980	0.702	0.0
356560629	702	PREDICTED: golgin candidate 1-like [Glyc	0.982	0.978	0.676	0.0
356497595	703	PREDICTED: golgin candidate 1-like [Glyc	0.987	0.981	0.681	0.0
225445112	694	PREDICTED: golgin candidate 1-like [Viti	0.975	0.982	0.689	0.0
449466268	709	PREDICTED: golgin candidate 1-like [Cucu	0.992	0.978	0.649	0.0
334184316	710	golgin candidate 1 [Arabidopsis thaliana	0.959	0.945	0.615	0.0
164708702	710	putative golgin-84-like protein [Arabido	0.959	0.945	0.614	0.0
79557632	707	golgin candidate 1 [Arabidopsis thaliana	0.955	0.944	0.612	0.0
297832160	746	hypothetical protein ARALYDRAFT_899882 [	0.951	0.891	0.591	0.0

>gi|255546349|ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|223546690|gb|EEF48188.1| Golgin-84, putative [Ricinus communis]

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/718 (71%), Positives = 580/718 (80%), Gaps = 20/718 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+ELADE SD Q+PASNGQGSQ K  + + KAQ+R S 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELADEHSDSQSPASNGQGSQPKTARGKKKAQKRLSK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
            ES K +    E   TQ S +++  ++D A L+VE +T  T K+  Q   EQQQ  ++DA
Sbjct: 61  IESDKASSAKAEFITTQTSQLEME-SEDRAALSVEHDTAPTSKSILQVVAEQQQDTDKDA 119

Query: 119 PSIPLTEQ-SKDMSKHDADRVEIP--ETFTDLDTATPNGEILNENDSDVHLNHPPSPLPP 175
            SI   E+ + ++ KHD D VE+P      D  T+T NGEILNE   D  L HPPSPLP 
Sbjct: 120 SSIKSPERLANEVVKHDTDNVEVPVAAADADAKTSTSNGEILNEKAPDGFLEHPPSPLPA 179

Query: 176 KEMGIVNEDRID---DAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
           KE+ ++NED  D   DAG   K +DA+ PL+ D   S+   +D P+N E  LKDAD+K  
Sbjct: 180 KEIEVLNEDHQDHPIDAGVNIKLSDAEVPLETDQERSQSANIDTPINDEIVLKDADLKAN 239

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
            + N++     KAD+ P K QDQL+EAQGLLKT ISTGQSKEARLARVCAGLS+RLQEYK
Sbjct: 240 PVVNQQDHHQQKADNSPKKIQDQLEEAQGLLKTAISTGQSKEARLARVCAGLSTRLQEYK 299

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL+AERELS+S E RIKQL+Q+LS  KSEVT+VESN+ EALAAKNSEIE LV
Sbjct: 300 SENAQLEELLIAERELSKSLETRIKQLQQDLSRSKSEVTRVESNMGEALAAKNSEIEALV 359

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           +SID LKKQAALSEGNLASLQ NMESIMRNRELTETRM+QALREEL+S ERRAEEERAAH
Sbjct: 360 NSIDVLKKQAALSEGNLASLQANMESIMRNRELTETRMMQALREELSSAERRAEEERAAH 419

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA EAS ALARIQRIADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 420 NATKMAAMEREVELEHRAVEASTALARIQRIADERTAKAAELEQKVALLEVECASLNQEL 479

Query: 470 QDMEARLKRGQKKSPEEANQAI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 527
           QDME R++RGQKKSPEEANQ I  QAWQ+EVERARQGQRDAENKLSS EAE+QKMRVEMA
Sbjct: 480 QDMETRVRRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAENKLSSTEAELQKMRVEMA 539

Query: 528 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV- 586
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+ R+++  
Sbjct: 540 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEVKRIKKXX 599

Query: 587 ----QSEAE-RSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAV 641
               Q EAE      R S SSWEED+EMK+LEPLPLHHRH+A AS+QLQKAAKLLDSGA 
Sbjct: 600 IDVKQIEAERSRVSRRASSSSWEEDSEMKALEPLPLHHRHMAVASMQLQKAAKLLDSGAA 659

Query: 642 RATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 699
           RATRFLWRYP AR+ILLFYLVFVHLFLMYLLHRLQEQAD+ +AREVA+SMGL T  LP
Sbjct: 660 RATRFLWRYPTARLILLFYLVFVHLFLMYLLHRLQEQADDLSAREVAQSMGLATPTLP 717

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738766|emb|CBI28011.3| unnamed protein product [Vitis vinifera]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/713 (70%), Positives = 572/713 (80%), Gaps = 15/713 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIK--AQRRH 58
           MASWLKAAEDLFEVVDRRAKLVV+EL+DEQ D Q P SNGQGSQ KK K + K  AQ+R 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKAQKRL 60

Query: 59  SADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNER 116
           S +E  KINDTA+ Q  TQ +  D+ P+KD AT + E +  T+  +  Q N EQ Q   +
Sbjct: 61  STNEPSKINDTAQVQTGTQPAVSDIAPDKDRATRSFENDETTSSNSTAQANNEQLQNGNK 120

Query: 117 DAP--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDT--ATPNGEILNENDSDVHLNHPPS 171
           DA    IP  E    DM K +AD  E+  T TD++   +T NGE++N+  +D +   P S
Sbjct: 121 DASVFGIPSLETLPNDMVKPEADLPEVAPTVTDVEAIASTSNGELVNDK-ADANEGQPTS 179

Query: 172 PLPPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKV 228
             P   + IV+ED   +AGQ  KS DAD P +ID   S+   VD P +S++   D+++KV
Sbjct: 180 FSPTAGVEIVSEDHPVEAGQNIKSRDADVPSQIDQEGSQSVNVDAPSSSDTQSNDSEIKV 239

Query: 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
           ET+SN++KQQ  K D  P K QDQLDEAQGLLKT +STGQSKEARL RVCAGL +RLQE 
Sbjct: 240 ETISNQKKQQEHKGDASPMKLQDQLDEAQGLLKTAVSTGQSKEARLTRVCAGLLTRLQEC 299

Query: 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348
           KSENAQLEELL AE+ELS SYEARIKQL+Q+LS  K EV+KVES + EALAAKNSEIE L
Sbjct: 300 KSENAQLEELLTAEKELSNSYEARIKQLQQDLSASKIEVSKVESIMVEALAAKNSEIEAL 359

Query: 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408
           V+S+DALKKQAA SEGNLAS+Q NMESIMRNRELTETRM+QALREELAS ERRAEEERAA
Sbjct: 360 VNSMDALKKQAAFSEGNLASMQANMESIMRNRELTETRMMQALREELASAERRAEEERAA 419

Query: 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
           H+ATKMAAMEREVELEH+A EAS ALARIQR+ADERTAKA E EQKVA+LEVECATL QE
Sbjct: 420 HHATKMAAMEREVELEHQAVEASTALARIQRVADERTAKAAEFEQKVALLEVECATLNQE 479

Query: 469 LQDMEARLKRGQKKSPEEANQAI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 526
           L DMEAR +RGQKKSPEEANQ I  QAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEM
Sbjct: 480 LHDMEARARRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAEAKLSSMEAELQKMRVEM 539

Query: 527 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586
           AAMKRDAEHYSR+EHMELEKRYRELTDLLY KQTQLE MASEKAAA FQLEKE+ RL+E 
Sbjct: 540 AAMKRDAEHYSRQEHMELEKRYRELTDLLYNKQTQLEAMASEKAAAGFQLEKEVKRLKEA 599

Query: 587 QSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRF 646
           Q EAERSR SRR  +SWE+D ++K+LEPLPLHHRH+A AS+QLQKAAKLLDSGAVRATRF
Sbjct: 600 QVEAERSRTSRRGSASWEDDTDIKALEPLPLHHRHMAAASIQLQKAAKLLDSGAVRATRF 659

Query: 647 LWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 699
           LWRYP AR++LLFYLVFVHLFLMYLLH LQEQAD  A+REVA+SMGL T  LP
Sbjct: 660 LWRYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASREVAQSMGLATPTLP 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560629|ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine max]

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/714 (67%), Positives = 565/714 (79%), Gaps = 27/714 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           M SWLKAAE LFEVVDRRAK V ++L++EQ D ++PASNGQGSQ K+ KS+ KAQ+  S 
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDSKSPASNGQGSQGKRTKSKPKAQKALS- 59

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPS 120
           D    I+DT  E++ + ++PVD+  + D     V+ E   +  T  N + ++    DA S
Sbjct: 60  DSPTIISDTTHEKSGSPSAPVDIATSIDK----VDPEIDVSASTSTN-QPKEPQPSDATS 114

Query: 121 IPLTEQS------KDMSKHDADRVEIPETFTDLDTAT--PNGEILNENDSDV-HLNHPPS 171
            PL   S       D+ KHD D  E      D+  AT   NG+ + E+ SD+  ++ PP+
Sbjct: 115 -PLLGSSLSKILGDDVGKHDTDDAEALVNDADIGVATIAGNGDPVQESASDICEMDPPPA 173

Query: 172 PLPPKEMGI-VNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVK 227
           P      GI  + D     GQI KS D DA   +D   S   A D   N++  LKD+DVK
Sbjct: 174 P-----KGIEGSSDEPTSTGQIIKSRDLDASKNVDIEKSDSVASDTAPNNDPILKDSDVK 228

Query: 228 VETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE 287
           VE++ +++ Q+  KAD  P K QDQLDEAQGLLKTT STGQSKEARLARVCAGLSSRLQE
Sbjct: 229 VESVVDEKSQEDHKADISPEKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQE 288

Query: 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347
           YKSENAQLEELL +ERELS+SYEA IKQL+++LS  K EVT+VESN+ EALAAKN+EIE 
Sbjct: 289 YKSENAQLEELLTSERELSKSYEASIKQLQKDLSESKREVTRVESNMVEALAAKNAEIEA 348

Query: 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407
           L+SS+DA+K+QAALSEGNLASLQ +MES+MRNREL+ETRM+QALREELAS ERRAEEER 
Sbjct: 349 LLSSMDAVKRQAALSEGNLASLQASMESMMRNRELSETRMMQALREELASAERRAEEERV 408

Query: 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467
           AHNATKMAAMEREVELEHRA E+S ALARIQR+ADERTAKA ELEQKVA+LEVECA+L Q
Sbjct: 409 AHNATKMAAMEREVELEHRAVESSTALARIQRVADERTAKATELEQKVALLEVECASLNQ 468

Query: 468 ELQDMEARLKRGQKKSPEEANQAI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 525
           ELQDMEAR++R QKK+PEEANQ I  QAWQ+E+ERARQGQR+AENKLSSLEAE+QKMRVE
Sbjct: 469 ELQDMEARVRREQKKAPEEANQVIQKQAWQEELERARQGQREAENKLSSLEAEMQKMRVE 528

Query: 526 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585
           MAAMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLETM SEKAA EFQLEKE+ RLQE
Sbjct: 529 MAAMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLQE 588

Query: 586 VQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATR 645
            ++EAERSRVSRR+ SSWE++ E+KSLEPLP+HHRH+ GAS+QLQKA KLLDSGAVRATR
Sbjct: 589 AKAEAERSRVSRRASSSWEDETEIKSLEPLPMHHRHLVGASIQLQKAVKLLDSGAVRATR 648

Query: 646 FLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 699
           FLWRYP AR+IL FYLVFVHLFLMYLLHRLQ QAD  AAREVAESMGL+  NLP
Sbjct: 649 FLWRYPTARVILFFYLVFVHLFLMYLLHRLQAQADTLAAREVAESMGLSNQNLP 702

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497595|ref|XP_003517645.1| PREDICTED: golgin candidate 1-like [Glycine max]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/712 (68%), Positives = 567/712 (79%), Gaps = 22/712 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           M SWLKAAE LFEVVDRRAK V ++L++EQ D ++PASNGQGSQ KK KS+ KAQ+  S 
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDLKSPASNGQGSQGKKTKSKPKAQKGLS- 59

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPS 120
           D S  I+DT +E++ + ++P D+  + D     V+ E I    +    + ++    DA S
Sbjct: 60  DSSTTISDTTQEKSGSPSAPADIATSIDK----VDPEIIDGSASTSTNQPKEPRPSDATS 115

Query: 121 IPLTEQS------KDMSKHDADRVEIPETFTDLDTAT--PNGEILNENDSDVHLNHPPSP 172
            PL   S       D+ KHD D VE      D+  AT   NG+ + E+ SDV    PP P
Sbjct: 116 -PLLGSSLSKMLGDDVGKHDPDDVETLVNDADIGVATIAANGDTVQESASDVCEMDPP-P 173

Query: 173 LPPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
            P +  G  +E      GQI KS D DA   +D   S+  A D   N+++ LKD+DVK+E
Sbjct: 174 APKEIEGPSDEPT--STGQIIKSRDLDASKNVDIEKSESVASDTAPNNDTILKDSDVKLE 231

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
           ++ +++ Q+  K D  P K QDQLDEAQGLLKTT STGQSKEARLARVCAGLSSRLQEYK
Sbjct: 232 SVVDEKSQEDHKTDISPKKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQEYK 291

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL +ERELS+SYEA IKQL+++LS  K EVT+VESN+ EALAAKN+EIE L+
Sbjct: 292 SENAQLEELLTSERELSKSYEASIKQLQKDLSESKREVTRVESNMVEALAAKNAEIEALL 351

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           SS+DA+K+QAALSEGNLASLQ +MES+MRNREL+ETRM+QALREELAS ERRAEEERAAH
Sbjct: 352 SSMDAVKRQAALSEGNLASLQASMESMMRNRELSETRMMQALREELASAERRAEEERAAH 411

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA E+S ALARIQR+ADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 412 NATKMAAMEREVELEHRAVESSTALARIQRVADERTAKATELEQKVALLEVECASLNQEL 471

Query: 470 QDMEARLKRGQKKSPEEANQAI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 527
           QDMEAR++R QKK+PEEANQ I  QAWQ+E+ERARQGQR+AENKLSSLEAE+QKMRVEMA
Sbjct: 472 QDMEARVRREQKKAPEEANQVIQMQAWQEELERARQGQREAENKLSSLEAEMQKMRVEMA 531

Query: 528 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLETM SEKAAAEFQLEKE+ RLQE +
Sbjct: 532 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAAAEFQLEKEIKRLQEAK 591

Query: 588 SEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFL 647
           +EAERSRVSRR+ SSWE++ E+KSLEPLPLHHRH+ GAS+QLQKA KLLDSGAVRATRFL
Sbjct: 592 AEAERSRVSRRASSSWEDETEIKSLEPLPLHHRHLVGASIQLQKAVKLLDSGAVRATRFL 651

Query: 648 WRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 699
           W+YP AR+IL FYLVFVHLFLMYLLHRLQ QAD  AAREVAESMGL+  NLP
Sbjct: 652 WQYPTARVILFFYLVFVHLFLMYLLHRLQVQADTLAAREVAESMGLSNQNLP 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445112|ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vinifera]

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/711 (68%), Positives = 560/711 (78%), Gaps = 29/711 (4%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+EL+DEQ D Q P SNGQGSQ KK K + K++     
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKV---- 56

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
                       Q  TQ +  D+ P+KD AT + E +  T+  +  Q N EQ Q   +DA
Sbjct: 57  ------------QTGTQPAVSDIAPDKDRATRSFENDETTSSNSTAQANNEQLQNGNKDA 104

Query: 119 P--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDT--ATPNGEILNENDSDVHLNHPPSPL 173
               IP  E    DM K +AD  E+  T TD++   +T NGE++N+  +D +   P S  
Sbjct: 105 SVFGIPSLETLPNDMVKPEADLPEVAPTVTDVEAIASTSNGELVNDK-ADANEGQPTSFS 163

Query: 174 PPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVET 230
           P   + IV+ED   +AGQ  KS DAD P +ID   S+   VD P +S++   D+++KVET
Sbjct: 164 PTAGVEIVSEDHPVEAGQNIKSRDADVPSQIDQEGSQSVNVDAPSSSDTQSNDSEIKVET 223

Query: 231 LSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKS 290
           +SN++KQQ  K D  P K QDQLDEAQGLLKT +STGQSKEARL RVCAGL +RLQE KS
Sbjct: 224 ISNQKKQQEHKGDASPMKLQDQLDEAQGLLKTAVSTGQSKEARLTRVCAGLLTRLQECKS 283

Query: 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350
           ENAQLEELL AE+ELS SYEARIKQL+Q+LS  K EV+KVES + EALAAKNSEIE LV+
Sbjct: 284 ENAQLEELLTAEKELSNSYEARIKQLQQDLSASKIEVSKVESIMVEALAAKNSEIEALVN 343

Query: 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHN 410
           S+DALKKQAA SEGNLAS+Q NMESIMRNRELTETRM+QALREELAS ERRAEEERAAH+
Sbjct: 344 SMDALKKQAAFSEGNLASMQANMESIMRNRELTETRMMQALREELASAERRAEEERAAHH 403

Query: 411 ATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470
           ATKMAAMEREVELEH+A EAS ALARIQR+ADERTAKA E EQKVA+LEVECATL QEL 
Sbjct: 404 ATKMAAMEREVELEHQAVEASTALARIQRVADERTAKAAEFEQKVALLEVECATLNQELH 463

Query: 471 DMEARLKRGQKKSPEEANQAI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 528
           DMEAR +RGQKKSPEEANQ I  QAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEMAA
Sbjct: 464 DMEARARRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAEAKLSSMEAELQKMRVEMAA 523

Query: 529 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 588
           MKRDAEHYSR+EHMELEKRYRELTDLLY KQTQLE MASEKAAA FQLEKE+ RL+E Q 
Sbjct: 524 MKRDAEHYSRQEHMELEKRYRELTDLLYNKQTQLEAMASEKAAAGFQLEKEVKRLKEAQV 583

Query: 589 EAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLW 648
           EAERSR SRR  +SWE+D ++K+LEPLPLHHRH+A AS+QLQKAAKLLDSGAVRATRFLW
Sbjct: 584 EAERSRTSRRGSASWEDDTDIKALEPLPLHHRHMAAASIQLQKAAKLLDSGAVRATRFLW 643

Query: 649 RYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 699
           RYP AR++LLFYLVFVHLFLMYLLH LQEQAD  A+REVA+SMGL T  LP
Sbjct: 644 RYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASREVAQSMGLATPTLP 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466268|ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] gi|449488127|ref|XP_004157946.1| PREDICTED: golgin candidate 1-like [Cucumis sativus]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/714 (64%), Positives = 544/714 (76%), Gaps = 20/714 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASW KAAE LFEVVDR+AKLVV+EL++EQS+ QT ASNGQGSQ KK K + K +    +
Sbjct: 1   MASWFKAAEGLFEVVDRKAKLVVSELSEEQSNAQTAASNGQGSQTKKTKPKKKKKVL--S 58

Query: 61  DESLKINDTAREQANTQASPVDV--TPNKDTATLAVEKETITTGK--TQKNGEQQQTNER 116
           +E    + T  EQ++T AS  DV  +P K     + E + + + K  TQ N  +   N+ 
Sbjct: 59  NELPTASATPEEQSSTLASKADVVLSPGKHGIVSSTEDDRMISDKSPTQVNERKPDDNDN 118

Query: 117 DAP--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDTATPNG--EILNENDSDVHLNHPPS 171
             P   IP T+    +  K   D ++      D++   P    E+ N N SDVH  +  S
Sbjct: 119 TIPVLEIPSTDGLVVEAGKQIPDGMDTSAAVADVEVIAPTSKTELTNVNASDVHEENLLS 178

Query: 172 PLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPP---VNSESSLKDADVKV 228
             P KE   +N++  D+  Q  K    +   KID ++    P     N ES  KD   KV
Sbjct: 179 T-PNKEAVEINKEHQDEE-QSNKLGSVETISKIDREMSESAPTEFQNNGESQTKDDSNKV 236

Query: 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
           ++  N++ Q+   AD    K QDQL+EAQ LLKT+ STGQSKEARL +VCAGLSSRLQE+
Sbjct: 237 QSPVNQKHQEN-TADKSSIKVQDQLEEAQMLLKTSNSTGQSKEARLVKVCAGLSSRLQEF 295

Query: 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348
           KSENAQLEELL+AERELSRSY+ARIKQLE+ L   K+EV++VES++AEALAAKN+EI  L
Sbjct: 296 KSENAQLEELLIAERELSRSYDARIKQLEENLLESKNEVSRVESSMAEALAAKNTEIGAL 355

Query: 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408
           + S+DALKKQAALSEG+LAS+Q NMES+MRNRELTETRM+QALREELAS ERRAEEER+A
Sbjct: 356 IGSMDALKKQAALSEGSLASMQANMESVMRNRELTETRMMQALREELASAERRAEEERSA 415

Query: 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
           HNATKMA+MERE+ELEHRA EA+ ALARIQR+ADERT+KA ELEQKVA+LEVEC++L QE
Sbjct: 416 HNATKMASMEREMELEHRAMEAASALARIQRVADERTSKATELEQKVALLEVECSSLNQE 475

Query: 469 LQDMEARLKRGQKKSPEEANQAI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 526
           LQD+EAR +RGQKKSP+EANQ I  QAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEM
Sbjct: 476 LQDLEARARRGQKKSPDEANQLIQMQAWQEEVERARQGQRDAELKLSSMEAELQKMRVEM 535

Query: 527 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586
           AAMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+NR QE 
Sbjct: 536 AAMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEINRAQEA 595

Query: 587 QSEAE-RSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATR 645
           Q E E      R S +SWEEDAEMKSLEPLPLHHR++ G SVQLQKAAKLLDSGAVRATR
Sbjct: 596 QVEVERSRASRRASSASWEEDAEMKSLEPLPLHHRYMVGTSVQLQKAAKLLDSGAVRATR 655

Query: 646 FLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 699
           FLWRYP AR+ILLFYLVFVHLF+MYLLHRLQ QAD   AREVAESMGLT  NLP
Sbjct: 656 FLWRYPTARLILLFYLVFVHLFMMYLLHRLQAQADTITAREVAESMGLTNPNLP 709

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184316|ref|NP_001189556.1| golgin candidate 1 [Arabidopsis thaliana] gi|330251854|gb|AEC06948.1| golgin candidate 1 [Arabidopsis thaliana]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/718 (61%), Positives = 534/718 (74%), Gaps = 47/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 61  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 117

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 118 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 168

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 169 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 226

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 227 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 286

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 287 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 346

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 347 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 406

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 407 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 466

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQA--IQAWQDEVERARQGQRDAEN 510
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ   IQAWQDEV+RARQGQRDAE 
Sbjct: 467 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 526

Query: 511 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 527 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 586

Query: 571 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 630
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 587 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 646

Query: 631 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 688
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 647 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 701

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164708702|gb|ABY67248.1| putative golgin-84-like protein [Arabidopsis thaliana]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/718 (61%), Positives = 533/718 (74%), Gaps = 47/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 61  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 117

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 118 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 168

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 169 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 226

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 227 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 286

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 287 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 346

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 347 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 406

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 407 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 466

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQA--IQAWQDEVERARQGQRDAEN 510
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ   IQAWQDEV+RARQGQRDAE 
Sbjct: 467 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 526

Query: 511 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 527 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 586

Query: 571 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 630
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+  AS QLQ
Sbjct: 587 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMDTASTQLQ 646

Query: 631 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 688
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 647 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 701

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79557632|ref|NP_179585.3| golgin candidate 1 [Arabidopsis thaliana] gi|85681038|sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gi|44917433|gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] gi|110738790|dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gi|330251853|gb|AEC06947.1| golgin candidate 1 [Arabidopsis thaliana]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/718 (61%), Positives = 532/718 (74%), Gaps = 50/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQA--IQAWQDEVERARQGQRDAEN 510
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ   IQAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 511 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 571 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 630
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 643

Query: 631 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 688
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 644 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 698

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832160|ref|XP_002883962.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] gi|297329802|gb|EFH60221.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/762 (59%), Positives = 534/762 (70%), Gaps = 97/762 (12%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV EL++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEELSEEQTDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE----R 116
           +ES    D + +Q+    S  +V P+ D A+               +G   QTNE     
Sbjct: 61  EESSNKRDFSGDQSGPGVSQSEVPPSIDEAS--------------SSGPVLQTNEIRTDA 106

Query: 117 DAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATP---NGEILNENDSDVHLNHPPSP- 172
           D  S+    QS   +K D   V   E+  D D A     +G+I   NDS V     PSP 
Sbjct: 107 DVQSVQSLPQSVADTKSDDAAVVGSESVVDGDGAESKHADGDI--PNDSLVQ----PSPS 160

Query: 173 LPPKEMGI-VNEDRIDDAGQITKSADADAPLKIDSKIQAVD--PPV---NSESSLKDADV 226
           LP KE+ + V+E+ +D      +    D+  +   K+++V   P V   N   S  D +V
Sbjct: 161 LPDKEIEVAVSENLVDAPKNGAQRELVDSSKRDLEKLESVVHVPSVGEGNVAQSTGD-EV 219

Query: 227 KV---------------ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKE 271
           KV               +T +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKE
Sbjct: 220 KVGTSINLEKEQEPEVPDTSTNLKREQDRRADTTSVKIQDQLEEAQGLLKATVSTGQSKE 279

Query: 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331
           ARLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+QL+++LS  KSEVTKVE
Sbjct: 280 ARLARVCAGLSSRLQEIKAENAQLEELLSAEQELTKSYEASIRQLQKDLSAAKSEVTKVE 339

Query: 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQAL 391
           S++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESI+RNREL ETRM+QAL
Sbjct: 340 SSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESILRNRELAETRMMQAL 399

Query: 392 REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
           REELA+ ERRAEEE +AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  +L
Sbjct: 400 REELATTERRAEEEHSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADL 459

Query: 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ---------------AWQD 496
           EQKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ               AWQD
Sbjct: 460 EQKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQILANPEELLLIMQIQAWQD 519

Query: 497 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY 556
           EV+RARQGQRDAE KLSS+EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLY
Sbjct: 520 EVDRARQGQRDAEEKLSSMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLY 579

Query: 557 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLP 616
           YKQTQLETMASEKAAAEFQLEKE+ RL E Q E ERSRVSRR  ++WEED+E+K+LEPLP
Sbjct: 580 YKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVERSRVSRRPSATWEEDSEIKTLEPLP 639

Query: 617 LHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLV-------------- 662
           L+HRH+A AS QLQ A KLLDSGAVRATRFLWRYPIARI LLFYLV              
Sbjct: 640 LYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIARIFLLFYLVRRSLIYSISFALLV 699

Query: 663 ---------------FVHLFLMYLLHRLQEQADNFAAREVAE 689
                          FVHLFLMYLLHRLQEQA+   A+EVAE
Sbjct: 700 NLWYIKMTSFMNLQVFVHLFLMYLLHRLQEQAE---AQEVAE 738

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
UNIPROTKB|E2QWJ2	731	GOLGA5 "Uncharacterized protei	0.891	0.852	0.210	1.2e-20
UNIPROTKB|Q8TBA6	731	GOLGA5 "Golgin subfamily A mem	0.550	0.526	0.245	5.4e-20
UNIPROTKB|Q6GNT7	722	golga5 "Golgin subfamily A mem	0.596	0.577	0.253	1.4e-19
MGI|MGI:1351475	729	Golga5 "golgi autoantigen, gol	0.550	0.528	0.233	1.1e-18
UNIPROTKB|F1SD67	729	GOLGA5 "Uncharacterized protei	0.779	0.747	0.223	1.4e-18
RGD|1308163	728	Golga5 "golgin A5" [Rattus nor	0.549	0.527	0.230	6.4e-18
UNIPROTKB|A5D7A5	732	GOLGA5 "GOLGA5 protein" [Bos t	0.839	0.801	0.211	8.4e-18
UNIPROTKB|E1C947	735	GOLGA5 "Uncharacterized protei	0.552	0.525	0.231	8.5e-18
ZFIN|ZDB-GENE-040426-2749	760	golga5 "golgi autoantigen, gol	0.805	0.740	0.229	1.1e-16
ZFIN|ZDB-GENE-030131-9795	1336	rrbp1a "ribosome binding prote	0.748	0.391	0.225	1.3e-13

UNIPROTKB|E2QWJ2 GOLGA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 276 (102.2 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 141/671 (21%), Positives = 274/671 (40%)

Query:     2 ASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTP--ASNG-QGSQAKKIKSRIKAQRRH 58
             A+++ +A D   + +++A ++    A+ +   +TP  AS+  + +   +  S+   +++ 
Sbjct:    60 ATYISSAAD--NIRNQKATILAGT-ANVKVGSRTPVEASHPIENASVPRPSSQFVRRKKS 116

Query:    59 SADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDA 118
               D+ L + D         +  V++   K    +     T T      +    +T E + 
Sbjct:   117 EPDDEL-LFDFLNSSQKEPSGRVEIKKEKSKTPVFQSSRTATVSSMNTSKTTVKTIEENP 175

Query:   119 PSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVH--LNHPPSPLPPK 176
             P      Q+ + S +     E+ E  +  +  + +    + N +  H   +H  S L  +
Sbjct:   176 PG----SQTDETSNNSDSGHEVQED-SSKENVSSSAASTDHNPTPTHDGKSHELSNLRLE 230

Query:   177 EMGIVNEDRI---DDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSN 233
                + NE +    + A  + +S +    L   +K +A     N + S  D   +      
Sbjct:   231 NQLLRNEVQSLNQEMASLLQRSKETQEEL---NKARARVEKWNVDHSKSDRITRELRAQV 287

Query:   234 KRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKS 290
                 +A+ A D      + +L EA  LL T     ++ ++  +R+    S  S LQ    
Sbjct:   288 DDLTEAVAAKDSQLAVLKVRLQEADQLLNTRTEALEALQSEKSRIMQDHSEGSSLQNQAL 347

Query:   291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350
             +  Q E L  A+    R  E+  KQ++ E +   +++     NLAEA+     +      
Sbjct:   348 QTLQ-ERLHEADATRKREQES-YKQIQSEFAARLNKMEVERQNLAEAVTLAERKYSDEKK 405

Query:   351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHN 410
              +D L++Q  + + NL S +  +    +      TR++Q                    +
Sbjct:   406 RVDELQQQVKVYKSNLESSKQELIDYKQKA----TRILQSKEKLINSLKEGSGFEGLDSS 461

Query:   411 ATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470
                  +ME E EL H   E  M    IQ++  +      EL+        E  + +++LQ
Sbjct:   462 TAN--SMELE-ELRH---EKEMQKEEIQKLMGQIHQLRSELQDMEVQQVSEAESAREQLQ 515

Query:   471 DMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSL----EAEVQKMRVEM 526
             D++ ++  GQK S +E    ++  + E     +     +N L S     E E+QK+R ++
Sbjct:   516 DLQDQIA-GQKASKQELEAELERQKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKLRNQL 574

Query:   527 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXX 586
                    +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE+   ++   
Sbjct:   575 TN-----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQVNSA 629

Query:   587 XXXXXXXXXXXXXXXXXXXXXXMKSLEPLPLH--HRHIAGASVQLQKAAKLLDSGAVRAT 644
                                   ++++ P+  +    ++AG   +++KAA  +D  ++R  
Sbjct:   630 SGSNSNGSSINMSAVDSGEGTRLRNV-PVLFNDTEMNLAGMYGKVRKAASSIDQFSIRLG 688

Query:   645 RFLWRYPIARI 655
              FL RYPIAR+
Sbjct:   689 IFLRRYPIARV 699

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 5.4e-20, P = 5.4e-20
 Identities = 101/412 (24%), Positives = 181/412 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  LL T     ++ ++  +R+    S  + LQ    +  Q E L  A+  L R  
Sbjct:   307 RLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQ-ERLHEADATLKREQ 365

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   ++V     NLAEA+     +       +D L++Q  L + NL S 
Sbjct:   366 ES-YKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESS 424

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                    +++  ++ME E EL H   E
Sbjct:   425 KQELIDYKQKA----TRILQSKEKLINSLKEGSGFEGL--DSSTASSMELE-ELRH---E 474

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
               M    IQ++  +      EL+   A    E  + +++LQD+  ++  GQK S +E   
Sbjct:   475 KEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIA-GQKASKQELET 533

Query:   490 AIQAWQDEVERARQGQRDAENKLSSL----EAEVQKMRVEMAAMKRDAEHYSREEHMELE 545
              ++  + E     +     +N L S     + E+QK+R ++       +  S     ELE
Sbjct:   534 ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTN-----KTLSNSSQSELE 588

Query:   546 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 605
              R  +LT+ L  KQT LE++++EK +  FQLE+   ++                      
Sbjct:   589 NRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGE 648

Query:   606 XXXMKSLEPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
                ++++ P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   649 GTRLRNV-PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 699

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:0048193 "Golgi vesicle transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0031985 "Golgi cisterna" evidence=IDA

UNIPROTKB|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)]

 Score = 266 (98.7 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 115/453 (25%), Positives = 196/453 (43%)

Query:   216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARL 274
             N ++S  D   +          +A+ A D      + +L EA  LLK+   T +S +   
Sbjct:   261 NGDNSKNDRTARELRAQVDDLSEAMAAKDSQLAVLKVRLQEADQLLKSRTETLESLQIEK 320

Query:   275 ARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
             +R+    S  S +     +  Q E L  AE  L R  E+  KQ++ E +   S++     
Sbjct:   321 SRILQDQSEGSSIHNQALQTMQ-ERLREAESTLIREQES-YKQIQNEFATRLSKIEAERQ 378

Query:   333 NLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXX 391
             NLAEA + A+   +E    S D L++Q   S+  L SL+  M    +      TR++Q  
Sbjct:   379 NLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLDSLKQEMADYKQKA----TRILQSK 433

Query:   392 XXXXXXXXXXXXXXXX-XHNATKMAAMEREVELEHRAAEASMALARIQRIA----DERTA 446
                               H+A+ M   E   E + +  E    + +IQ++     D  T 
Sbjct:   434 EKLINSLKEGSGIEGLDSHSASTMELEEMRHERDMQREEIQKLMGQIQQLKAELQDVETQ 493

Query:   447 KAGELEQKVAMLE---VECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQ 503
             +  E E     L+    + AT Q+  Q++EA L+R QK       Q  Q  Q+++ + + 
Sbjct:   494 QVSEAESAREQLQDVHEQFATQQRAKQELEAELER-QK-------QEFQYIQEDLYKTKN 545

Query:   504 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE 563
                  + ++   E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE
Sbjct:   546 ---TLQGRIRDREDEIQKLRNQLTN-----KALSSSSQTELENRLHQLTETLIQKQTMLE 597

Query:   564 TMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSLEPL-PLHHRHI 622
              +++EK +  +QLE+  ++L+                        M+++  L      ++
Sbjct:   598 NLSTEKNSLVYQLERLEHQLKNVQGSSLNGTSINMSVIESNEGARMRNVPVLFSDSDPNV 657

Query:   623 AGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
             AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   658 AGMYGRVRKAATSIDQFSIRLGIFLRRYPIARV 690

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048193 "Golgi vesicle transport" evidence=ISS

MGI|MGI:1351475 Golga5 "golgi autoantigen, golgin subfamily a, 5" [Mus musculus (taxid:10090)]

 Score = 258 (95.9 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 96/412 (23%), Positives = 178/412 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  +L +     ++  +  +R+       S LQ    +  Q E L  A+  L R  
Sbjct:   305 RLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQ-ERLHEADATLKREQ 363

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   +++     NLAEA+     +       +D L++Q  L   +L S 
Sbjct:   364 ES-YKQMQSEFAARLNKMEVDRQNLAEAVTLAERKYSEEKKKVDELQQQVKLHRASLESA 422

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                     ++  ++ME E EL H   E
Sbjct:   423 KQELVDYKQKA----TRILQSKEKLINSLKEGSSFEGL--ESSTASSMELE-ELRH---E 472

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
               M    IQ++  +      EL+   A    E  + +++LQD++ ++ + Q+ S +E   
Sbjct:   473 KEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQDQIAK-QRTSKQELET 531

Query:   490 AIQAWQDEVERARQGQRDAENKLSSL----EAEVQKMRVEMAAMKRDAEHYSREEHMELE 545
              ++  + E     +     +N L S     E E+QK+R ++       +  S     ELE
Sbjct:   532 ELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELE 586

Query:   546 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 605
              R  +LT+ L  KQT LE++++EK +  FQLE+   ++                      
Sbjct:   587 SRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQVHSASSGPNSGSAINMSGVDSGE 646

Query:   606 XXXMKSLEPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
                ++++ P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   647 GTRLRNV-PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 697

GO:0000137 "Golgi cis cisterna" evidence=ISO

GO:0000138 "Golgi trans cisterna" evidence=ISO

GO:0000139 "Golgi membrane" evidence=ISO;IDA

GO:0000301 "retrograde transport, vesicle recycling within Golgi" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005797 "Golgi medial cisterna" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030663 "COPI-coated vesicle membrane" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0031985 "Golgi cisterna" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=ISO

UNIPROTKB|F1SD67 GOLGA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 257 (95.5 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 131/585 (22%), Positives = 236/585 (40%)

Query:    89 TATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDA--DRVEIPETFTD 146
             T  + ++KE   T   Q +     +     P++   E+      H+A  + V   E   D
Sbjct:   135 TGKVEIKKERGKTPVFQSSRTGVHSVNTGVPTVKTVEEDPGSQGHEAATNSVSGHEGQED 194

Query:   147 L--DTATPNGEILNENDS--DVHLNHPPSPLPPKEMGIVNEDRI---DDAGQITKSADAD 199
                +  +PN    + N +  D   +H  S L  +   + NE +    + A  + +S +  
Sbjct:   195 SSKENISPNTACADHNPTPNDDGKSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQ 254

Query:   200 APLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQG 258
               L   +K +A     N + S  D   +          +A+ A D      + +L EA  
Sbjct:   255 EEL---NKARARVEKWNVDHSKSDRITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQ 311

Query:   259 LLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQL 316
             LL       ++ +   +R+    S  S LQ    +  Q E L  A+  L R  E+  KQ+
Sbjct:   312 LLSARTEALEALQNEKSRIMQDHSEGSSLQNQALQTLQ-ERLHEADASLKREQES-YKQM 369

Query:   317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376
             + E +   +++     NLAEA+     +       +D L++Q    + N+ S +  +   
Sbjct:   370 QSEFAARLNKMEVERLNLAEAVTLAERKYSDEKKRVDELQQQVKTLKSNVESSKQELIDY 429

Query:   377 MRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAEASMALAR 436
              +      TR++Q                    +     +ME E EL H   E  M    
Sbjct:   430 KQKA----TRILQSKEKLINSLKEGSGFEGLDSSTAN--SMELE-ELRH---EKEMQREE 479

Query:   437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQD 496
             IQ++  +      EL+   A    E  + ++ LQD++ ++  GQK S +E    ++  + 
Sbjct:   480 IQKLMGQIHQLRSELQDMEAQQVSEAESARERLQDLQDQIA-GQKASKQELEAELERQKQ 538

Query:   497 EVERARQGQRDAENKLSSL----EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 552
             E     +     +N L S     E E+QK+R ++       +  S     ELE R  +LT
Sbjct:   539 EFHYMEEDLYRTKNTLQSRIKDREDEIQKLRNQLTN-----KTLSNSSQSELENRLHQLT 593

Query:   553 DLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSL 612
             + L  KQT LE++++EK +  FQLE+   ++                         ++++
Sbjct:   594 ETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGVDSGEGTRLRNV 653

Query:   613 EPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
              P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   654 -PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 697

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

RGD|1308163 Golga5 "golgin A5" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 95/412 (23%), Positives = 180/412 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  +L +     ++ ++  +R+    +  S LQ    +   L+E   A+  L R  
Sbjct:   305 RLQEADQVLSSRTEALEALQSEKSRIMQDHNEGSSLQNQALQT--LQERHEADATLKREQ 362

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   +++     NLAEA+     +       +D L++Q  L   +L S 
Sbjct:   363 ES-YKQMQSEFATRLNKMEVERQNLAEAVTLAERKYSEERKKVDDLQQQVKLHRSSLESA 421

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                    +++  ++ME E EL H   E
Sbjct:   422 KQELVDYKQKA----TRILQSKEKLINSLKEGSSFEGL--DSSTASSMELE-ELRH---E 471

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
               +    IQ++  +      EL+   A    E  + +++LQD++ ++ + Q+ S +E   
Sbjct:   472 RELQKEEIQKLMGQIHQLRSELQDMEAQQVSEAESAREQLQDLQDQIAK-QRASKQELET 530

Query:   490 AIQAWQDEVERARQGQRDAENKLSSL----EAEVQKMRVEMAAMKRDAEHYSREEHMELE 545
              +   + E     +     +N L S     E E+QK+R ++       +  S     ELE
Sbjct:   531 ELDRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELE 585

Query:   546 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 605
              R  +LT+ L  KQT LE++++EK +  FQLE+   +L                      
Sbjct:   586 SRLHQLTETLIQKQTLLESLSTEKNSLVFQLERLEQQLHSAATGPSSGSSINMSGVDSGE 645

Query:   606 XXXMKSLEPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
                ++++ P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   646 GTRLRNV-PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 696

GO:0000137 "Golgi cis cisterna" evidence=IDA

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA;ISO;IDA

GO:0000301 "retrograde transport, vesicle recycling within Golgi" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0005797 "Golgi medial cisterna" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IEA;ISO

GO:0007030 "Golgi organization" evidence=IEA;ISO;ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0017137 "Rab GTPase binding" evidence=IEA;ISO;IDA

GO:0030663 "COPI-coated vesicle membrane" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0031985 "Golgi cisterna" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO;ISS

GO:0048193 "Golgi vesicle transport" evidence=IEA;ISO;ISS

UNIPROTKB|A5D7A5 GOLGA5 "GOLGA5 protein" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 133/629 (21%), Positives = 249/629 (39%)

Query:    41 QGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETIT 100
             + + A +  S+   +++   D+ L + D            V++   K+ A   V + + T
Sbjct:   100 ENASAPRPSSQFVRRKKSEPDDEL-LFDFLNSSQKEPTGKVEI--KKEKAKTPVLQSSRT 156

Query:   101 TGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNEN 160
             +     N     T  +     P   QS   S HD+D        +  +    N    + N
Sbjct:   157 SSVNSVN--TSVTTIKAVEENPSGSQSHAAS-HDSDSGHETHEDSSKENVLSNAACTDPN 213

Query:   161 D--SDVHLNHPPSPLPPKEMGIVNE-DRIDD--AGQITKSADADAPLKIDSKIQAVDPPV 215
                +D   +H  S L  +   + NE   ++   A  + +S +    L   +K +A     
Sbjct:   214 PVPNDDGRSHELSNLRLENQLLRNEVQNLNQEMASLLQRSKETQEEL---NKARARVEKW 270

Query:   216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARL 274
             N + S  D   +          +A+ A D      + +L EA  LL T     ++ ++  
Sbjct:   271 NVDHSKTDRITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLNTRTEALEALQSEK 330

Query:   275 ARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
             +R+    S  S LQ    +  Q E L  A+  L R  E+  KQ++ E +   +++     
Sbjct:   331 SRIIQDHSEGSSLQNQALQTLQ-ERLHEADATLKREQES-YKQMQSEFAARLNKMEVERQ 388

Query:   333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXXX 392
             NLAEA+     +       +D L++Q  + + +L S +  +    +      TR++Q   
Sbjct:   389 NLAEAVTLAERKHSDEKKRVDELQQQVKVLKSSLDSSKQELADYKQKA----TRILQSKE 444

Query:   393 XXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
                              +      +E   EL H   E       IQ++  +      EL+
Sbjct:   445 KLINSLKEGSGFEGLDSSTANSVELE---ELRH---EKETQREEIQKLMGQIHQLRSELQ 498

Query:   453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKL 512
                A    E  + +++LQD++ ++  GQ+ + +E    +   + E     +     +N L
Sbjct:   499 DIEAQQVSEAESAREQLQDLQDQIA-GQRAAKQELEAELDRQKQEFHYIEEDLYRTKNTL 557

Query:   513 SSL----EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 568
              S     E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE++++E
Sbjct:   558 QSRIKDREDEIQKLRNQLTN-----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTE 612

Query:   569 KAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSLEPLPLH--HRHIAGAS 626
             K +  FQLE+   ++                         ++++ P+  +    ++AG  
Sbjct:   613 KNSLVFQLERLEQQINSAAGSSSNGSSINMAGVDSGEGTRLRNV-PVLFNDTETNLAGMY 671

Query:   627 VQLQKAAKLLDSGAVRATRFLWRYPIARI 655
              +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   672 GKVRKAASSIDQFSIRLGIFLRRYPIARV 700

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 95/411 (23%), Positives = 180/411 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  LL +     ++ ++  +R+    S  S LQ    +  Q + L  A+  L R  
Sbjct:   311 RLQEADQLLSSRTEALEALQSEKSRIIQDHSEGSSLQNQALQTLQ-DRLRDADSTLKREQ 369

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   S++     NLAE + A   +        D L++Q  +++  L S 
Sbjct:   370 ES-YKQMQNEFAARLSKMEAERQNLAEGVTAAERKYLDEKKRADELQQQVKVTKNQLESA 428

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                    ++   + ME E EL H   E
Sbjct:   429 KQELADYKQKA----TRILQSKEKLINSLKEGSGIEGL--DSQTASTMELE-ELRH---E 478

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
                    IQ++  +      EL+        E  +++++LQD++ ++    K + +EA  
Sbjct:   479 RDTQREEIQKLMGQIQQMRTELQDMETQQVSEAESVREQLQDLQEQIA-AHKMAKQEAEA 537

Query:   490 AIQAWQDEV----ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE 545
              ++  + E+    E   + +   ++++   E E+QK+R ++       +  S     ELE
Sbjct:   538 ELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQKLRNQLTN-----KALSSSSQTELE 592

Query:   546 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 605
              R  +LT+ L  KQT LE++++EK +  +QLE+  ++L+                     
Sbjct:   593 NRLHQLTETLIQKQTMLESLSTEKNSLVYQLERLEHQLKAFQGSSTNGPSINMAGIDGTE 652

Query:   606 XXXMKSLEPLPLH-HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 655
                M+++  L      ++AG   +++KAA  +D  ++R   FL RYPIARI
Sbjct:   653 GARMRNVPVLFSDVDTNVAGMYGRVRKAASSIDQFSIRLGIFLRRYPIARI 703

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2749 golga5 "golgi autoantigen, golgin subfamily a, 5" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 141/614 (22%), Positives = 246/614 (40%)

Query:    68 DTAREQANTQASPVDVTPNKD--TATLAVEKET---ITTGKTQKNGEQQQTNERDAPSIP 122
             +  RE  +   SP  V+      T +LA +  T   +T   +   G  + ++     S  
Sbjct:   140 EVRRETVSKAFSPTGVSAQSQMPTVSLASDLHTGPSVTPTPSSTQGLSRNSSLGSLSSSS 199

Query:   123 LTEQSKDMSKHDADRVEIPETFT----DLDTATPNGEI----LNENDSDVHLNHPPSPLP 174
              + +++D S  D  + ++PE+ T    DL    P  EI    L +        H  S L 
Sbjct:   200 HSVKTEDSSTRDQSQADVPESLTAGLDDLADPQPVLEIQSQDLQQQQQQQGQEHVISNLR 259

Query:   175 PKEMGIVNE-DRIDD--AGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETL 231
              +   + NE   ++   A  I ++ D    + +    +A     NS+ S  D  V+  + 
Sbjct:   260 LENQLLRNEVSSLNQEMASLIQRAKDMQEEVNLG---RARADKWNSDQSRVDRTVRELSS 316

Query:   232 SNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKS 290
                   +AL A D      + +LDEA  LLK   S    +EA+  RV      R+ +  S
Sbjct:   317 QVDDLTEALSAKDGQLAVLKVRLDEADQLLKARSSA--LEEAQNERV------RILQDHS 368

Query:   291 ENAQLEELLVAE-RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
             E + L    V   ++  R  EA +K+ EQE   Y+    +++S  A  LA   +E +TL 
Sbjct:   369 EGSSLHSQAVQTLQDRLRDAEAAVKR-EQES--YR----QIQSEFAARLAKVEAERQTLA 421

Query:   350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXH 409
              S+   +++    +     LQ   +S     E T+  +                      
Sbjct:   422 ESLTNAERRLTEEKQRAEDLQQQAKSSRSAAEYTKQELQDYKNKASRILQSKEKLINSLK 481

Query:   410 NATKMAAMERE---VELEHRAAEASMALARIQRIADERTAKAGELE--QKVAMLEVECAT 464
               + +  +E     VELE    E  +    IQ++  +  +   E++  +  A+ E E   
Sbjct:   482 EGSGLEVLEGAGAGVELEELRHEKELQREEIQKLQAQIQSLRTEIQDLETQALTENESWR 541

Query:   465 LQ-QELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 523
              Q  E+Q+  A+  R +++   E  ++ Q  Q   E   + +   + ++   E E+QK+R
Sbjct:   542 EQLAEVQEQHAQQIRAKQEIEAELERSKQELQYIEEEHHRTKITLQGRVKDREDEIQKLR 601

Query:   524 VEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583
              ++       +  S     ELE R  +LT+ L  KQT LE + +EK +  FQLE+   +L
Sbjct:   602 NQLTN-----KALSNSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQLERLEQQL 656

Query:   584 QXXXXXXXXXXXXXXXXXXXXXXXXMKSLEPLPLHHRHIAGASV--QLQKAAKLLDSGAV 641
             +                          +  P+        G  V  +++KAA  +D  ++
Sbjct:   657 KSLQGGQNSASHINMAAMEGPGARQRNT--PILFSDGDGPGTGVYGKVRKAASTIDRFSI 714

Query:   642 RATRFLWRYPIARI 655
             R   FL RYP+AR+
Sbjct:   715 RLGIFLRRYPMARV 728

GO:0048193 "Golgi vesicle transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA;ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-9795 rrbp1a "ribosome binding protein 1 homolog a (dog)" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 131/580 (22%), Positives = 247/580 (42%)

Query:    36 PASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVE 95
             PA   + +Q    +   KAQ+  S   + K +  A  Q    ++P    P K T   A +
Sbjct:   299 PAPVQKSAQPAPTEKSAKAQKAASTAPAQKSSPPAPPQ-KPASNP---QPQKGTPLAASQ 354

Query:    96 K-ETIT--TGKTQKNGEQ---QQTNERD---APSIPLTEQSKDMSKHDADRVEIPETFTD 146
             K ET T  + K QK       Q+++  D   +PS P + Q+       A     P T  D
Sbjct:   355 KSETPTEKSVKAQKAAPPAPAQKSSPPDRKPSPSAPASSQNSTSGITPAP--PCP-TVED 411

Query:   147 LDTA-TPNGEILNENDSD-VHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKI 204
                A +P G+   ++ ++       P  + P E+             +TK     A   +
Sbjct:   412 APPAPSPKGKRKKKSKAESASAEVQPKSVAPLEV-------------VTKKVPVMAVPPV 458

Query:   205 DS-KIQAVDP-PVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKT 262
              + K  AV   PV +E S +DA  K ++ S K+ + A+ AD  P      L   + LL T
Sbjct:   459 GTQKAAAVTAVPVKAEESKQDAPPKKKSGSKKKAEPAVAAD--PADSPLYLPY-KALLST 515

Query:   263 TISTGQSK-EAR-LARVCAGLSSRLQE------YKSE-----NAQLEEL---LVAERELS 306
               S   S+ EA+ L ++ +  +  +Q+       K +       QLEE    L AE+E +
Sbjct:   516 VRSMVFSEGEAQQLIQILSDKAGIIQDTWQKATQKGDPVVLLKKQLEERDKQLAAEQEDA 575

Query:   307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA-LKKQAALSEGN 365
              + + R++ L +ELSV KS+V  +E+ L+  L+ +  +I  L + + A  +   A S+  
Sbjct:   576 AAAKGRLRDLNKELSVEKSKVASIETRLSSQLSKREQDIIALQARMQASYQDHLAESQQL 635

Query:   366 LASLQMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMERE-VELE 424
              A L    + + +       R+ Q                    NA ++A + ++ V L 
Sbjct:   636 NAKLLALQDQLEKGPNAQLARLQQENSILRDALNQATSQTESKQNA-ELAKLRQDCVRLN 694

Query:   425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484
                AE + AL   +++      KA  +E+++  ++   A  +Q LQ     +    +++ 
Sbjct:   695 KELAEKNDALQADEQLRKNLETKAASVEKQLNQMQASRANAEQALQKRLEEVSEELRQTQ 754

Query:   485 EEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 544
                N  +QA  ++ ++      +A+ +++S+E E+++    + +++   +    E   +L
Sbjct:   755 SNRNN-LQAQLEQAQKDAAALAEAKARVASVEVEMKERTGHLESLQSQLKQTQTEREQQL 813

Query:   545 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 584
              K   ++++ +  +  Q      EK  A   LE+E+ +L+
Sbjct:   814 -KEQNDISETVTAELEQARKSLKEKEIAVSTLEEELTQLK 852

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLY8	GOGA5_ORYSJ	No assigned EC number	0.5656	0.9570	0.9435	yes	no
Q8S8N9	GOGC1_ARATH	No assigned EC number	0.6128	0.9556	0.9448	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016674001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (677 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017645001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (684 aa)							•		0.488
	GSVIVG00037126001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (947 aa)							•		0.427
	GSVIVG00035969001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (354 aa)					•				0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	699
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
pfam09787	509	pfam09787, Golgin_A5, Golgin subfamily A member 5	9e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.002
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
pfam13166	713	pfam13166, AAA_13, AAA domain	0.003
PRK12718	510	PRK12718, flgL, flagellar hook-associated protein	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
            KE ++L+E    L+  +   +  +  L          ++E KSE  +L E L   +E  
Sbjct: 238 RKELEELEEELSRLEEEL---EELQEELEE----AEKEIEELKSELEELREELEELQEEL 290

Query: 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366
              +  I++LE E+S+ +  + ++E+ L E        +E L   I+ALK++    E  L
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEE----RLEELKEKIEALKEELEERETLL 346

Query: 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426
             L+  +  +   +E  E ++  AL EEL  +     EE A   A          EL+  
Sbjct: 347 EELEQLLAELEEAKEELEEKLS-ALLEELEELFEALREELAELEAELAEIRNELEELKRE 405

Query: 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
                  L R+    ++   +  ELE ++  L+ E   L +EL+++E +L+  + +  +E
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL-KE 464

Query: 487 ANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 530
             + +   Q+E++R  +     E +L  LEAE +  +   A ++
Sbjct: 465 LERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 66.6 bits (163), Expect = 3e-11
 Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 35/347 (10%)

Query: 225  DVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSR 284
              ++E L  K ++   K  +   K   +L +    L+  +   + +   L+R  + L   
Sbjct: 676  RREIEELEEKIEELEEKIAEL-EKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 285  LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA---LAAK 341
            L   ++E  QLEE +    +     EA I++LE+ L   + E+ + E+ + E    +   
Sbjct: 735  LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------IQALREEL 395
              E++ L  ++D L+ +  L     A+L+  +ES+ R    TE R+      I+ L E++
Sbjct: 795  KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 396  ASVE----------RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
             S+              E E  A    + +  E    L     E S  L  ++    E  
Sbjct: 855  ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQ 505
             +  EL +K+A LE+    L+  + +++ RL      + EEA       +D+ E AR+  
Sbjct: 915  RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974

Query: 506  RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 552
            +  ENK+  L        V +AA+         EE+ EL++RY  LT
Sbjct: 975  KRLENKIKELG------PVNLAAI---------EEYEELKERYDFLT 1006

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 75/312 (24%), Positives = 144/312 (46%), Gaps = 24/312 (7%)

Query: 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            E   L++    L+  +   + +   L R  A L   L++ +S   +LEE L    E   
Sbjct: 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754

Query: 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
             + R+++LE+EL   +  + K    L E +     + + L   ++ L+++   +E  L 
Sbjct: 755 ELQERLEELEEELESLEEALAK----LKEEIEELEEKRQALQEELEELEEELEEAERRLD 810

Query: 368 SLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA---AMEREVELE 424
           +L+  +ES+ + RE  E   I+ L EE+  +E + +E        +       E   ELE
Sbjct: 811 ALERELESLEQRRERLEQE-IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484
               E    L  ++   +E   +  ELE ++A L+ E   L++ L+++EA+L+R + + P
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929

Query: 485 EEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMR-VEMAAMKRDAEHYSREEHME 543
           E   +  + ++D +E       + E ++  LE E++ +  V + A+         EE+ E
Sbjct: 930 ELEEELEEEYEDTLE------TELEREIERLEEEIEALGPVNLRAI---------EEYEE 974

Query: 544 LEKRYRELTDLL 555
           +E+RY EL    
Sbjct: 975 VEERYEELKSQR 986

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.4 bits (152), Expect = 5e-10
 Identities = 70/342 (20%), Positives = 129/342 (37%), Gaps = 33/342 (9%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           + TG S +   + +      R +E +    ++EEL     EL    E  + +L +EL   
Sbjct: 660 VITGGSAKTNSSILE-----RRREIEELEEKIEELEEKIAEL----EKALAELRKEL--- 707

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR-EL 382
                     L E L     E+E L   I AL+K  A  E  +  L+  +  + +   EL
Sbjct: 708 --------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759

Query: 383 TETRMIQALR-EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIA 441
                    R EE       AE E     A      E    L     E    L  +   A
Sbjct: 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819

Query: 442 DERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR------GQKKSPEEANQAIQAWQ 495
                +   LE+++A  E     L+++++++   ++         ++  EE    ++A  
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879

Query: 496 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 555
           +E     +      ++L  L  E++++  + + ++R+ E   RE+  +LE R   L   +
Sbjct: 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEE-LREKLAQLELRLEGLEVRI 938

Query: 556 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSR 597
              Q +L    SE+ +   +  + +    E   E  R R+ R
Sbjct: 939 DNLQERL----SEEYSLTLEEAEALENKIEDDEEEARRRLKR 976

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 65/281 (23%), Positives = 121/281 (43%), Gaps = 28/281 (9%)

Query: 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYE 310
           ++L E    L+  +   + +   L      L  +L+E + E ++LEE +   ++   +  
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370
             I +LEQ+  + +  +  +E  L E      +++E L S +D L ++ A  E  L  L+
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELAEELAELEEKLEELK 350

Query: 371 MNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA 430
             +ES            ++ L  EL  +E R EE        +    + E+++     E 
Sbjct: 351 EELES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 431 SMALARIQRIADER---------------TAKAGELEQKVAMLEVECATLQQELQDMEAR 475
               AR++R+ D R                A+  EL+ ++  LE E   LQ+EL+ +E  
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462

Query: 476 LKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLE 516
           L+   ++  EEA QA+ A + E+ + +      E    +LE
Sbjct: 463 LEE-LREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.3 bits (149), Expect = 2e-09
 Identities = 70/351 (19%), Positives = 141/351 (40%), Gaps = 13/351 (3%)

Query: 253 LDEAQGLL--KTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLE-ELLVAERELSRSY 309
           ++EA G+   K      + K  R       L   L+E + +  +LE +   AER      
Sbjct: 161 IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE--L 218

Query: 310 EARIKQLEQELSVYK-SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368
           +A +++LE  L + K  E+ K    L E L+    E+E L   ++  +K+    +  L  
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 369 LQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428
           L+  +E  ++   L     I+ L  E++ +  R EE        +    E + ++E    
Sbjct: 279 LREELEE-LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488
           E       ++ +           E+    L      L++  + +   L   + +   E  
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL-AEIR 396

Query: 489 QAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRY 548
             ++  + E+E   +       +L  L+ E++++  E+  ++ + E    EE  ELE++ 
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEE-LNEELEELEEQL 455

Query: 549 RELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS 599
            EL D    +  +LE   +E      +LEKE++ L+      E  + + + 
Sbjct: 456 EELRD----RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 34/308 (11%)

Query: 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343
           RL+E + E  +L+E L    E      A +++LE++L   + EV+++E  + E       
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL----QK 288

Query: 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403
           E+  L + I  L++Q  +    LA+L+  +E +    E  E   +  L EELA +E + E
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE-SKLDELAEELAELEEKLE 347

Query: 404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463
           E             E    LE    E    L  ++   +E   +   L  KVA LE++ A
Sbjct: 348 E-----------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

Query: 464 TLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 523
           +L  E++ +EARL+R                +D  ER +Q   +   KL   E +  +  
Sbjct: 397 SLNNEIERLEARLER---------------LEDRRERLQQEIEELLKKLEEAELKELQAE 441

Query: 524 VEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583
           +E      +     +EE   LE+   EL + L   +  L+    E A  + +L+      
Sbjct: 442 LE---ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

Query: 584 QEVQSEAE 591
           + ++  +E
Sbjct: 499 ENLEGFSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 44/222 (19%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 392 REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
            EEL    + AEEE     A      E+  EL    +E    +  +Q+       +   L
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300

Query: 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENK 511
           EQ+  +L    A L+++L+++EA+L+  + K  +E  + +   ++++E       + + +
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKL-DELAEELAELEEKLE-------ELKEE 352

Query: 512 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 571
           L SLEAE++++  E+  ++        E+   L  +  +L   +     ++E + +    
Sbjct: 353 LESLEAELEELEAELEELES-RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 572 AEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 613
            E + E+    ++E+  + E + +        E + E++ L+
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.9 bits (143), Expect = 8e-09
 Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 20/257 (7%)

Query: 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVER-----RAEEERAAHNATKMAAM 417
           E  L  L+  ++S+ R  E  E    + L+ EL  +E      R EE R      +    
Sbjct: 192 EDILNELERQLKSLERQAEKAER--YKELKAELRELELALLVLRLEELREELEELQEELK 249

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
           E E ELE   AE      +++ +  E      ELE+++  L+ E   L  E+  +E + +
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQ 305

Query: 478 RGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS 537
              ++      + ++  + ++E       +   +L+ LE ++++++ E+ ++        
Sbjct: 306 I-LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL-------- 356

Query: 538 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSR 597
             E  ELE    EL   L   + QLET+ S+ A  E Q+    N ++ +++  ER    R
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 598 RSWSSWEEDAEMKSLEP 614
                  E+   K  E 
Sbjct: 417 ERLQQEIEELLKKLEEA 433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 98/458 (21%), Positives = 177/458 (38%), Gaps = 83/458 (18%)

Query: 216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLA 275
             E  +++   ++E L  K K+  LK      +E  +L E        +   + + +RL 
Sbjct: 263 ELEERIEELKKEIEELEEKVKE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---------RIKQLEQELSVYKSE 326
               G+  R++E + +  +LEEL    +EL +  E            K  ++EL   K  
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380

Query: 327 VT-----KVESNLAEALAAKNS---EIETLVSSIDALKKQAALSEGNLASLQ-MNMESIM 377
           +T     K+E  L E   AK     EI  + + I  LKK+    +  +  L+    +  +
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440

Query: 378 RNRELTE----------TRMIQALREELASVE---------------------------- 399
             RELTE          T  ++ + +EL  +E                            
Sbjct: 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500

Query: 400 -----RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454
                +  EE+   +N  ++     E E   +  E  + L    +   +   K  EL++K
Sbjct: 501 LAEQLKELEEKLKKYNLEELEKKAEEYE---KLKEKLIKLKGEIKSLKKELEKLEELKKK 557

Query: 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQD------EVERARQGQRDA 508
           +A LE +   L++EL ++   L+    +S EE  + ++  +       E++ A +     
Sbjct: 558 LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617

Query: 509 ENKLSSLEAEVQKMRVEMAAMKRDAE-----------HYSREEHMELEKRYRELTDLLYY 557
           E +L  LE E+ K   E+A  ++  E            YS EE+ EL + Y EL+  L  
Sbjct: 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677

Query: 558 KQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 595
            + +LE +   +   +  LEK    L+E +   +    
Sbjct: 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 4e-08
 Identities = 65/311 (20%), Positives = 134/311 (43%), Gaps = 40/311 (12%)

Query: 281  LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
             S ++ E + E  QLE+     +E     E  +  LEQE+   KSE+ ++E+ + E    
Sbjct: 714  ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 341  KN---------------SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
             +               S I  + + +  L+++ +  E  L  ++  +  +   +E  E 
Sbjct: 774  LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833

Query: 386  RMIQALREELASVERRAEEERAAHNA-TKMAAMEREVELEHRAAEASMA--LARIQRIAD 442
             + +   + +   E+    E+   N   K   +E E+E E  AA   +   L  +++  D
Sbjct: 834  EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERD 892

Query: 443  ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERAR 502
            E  A+  ELE+K+  LE +    ++ L +++A+L        E   + +   +D      
Sbjct: 893  ELEAQLRELERKIEELEAQIEKKRKRLSELKAKL--------EALEEELSEIEDPK---G 941

Query: 503  QGQRDAENKLS--SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQT 560
            + +   E +LS   ++AE+Q++  E+ A++      + +E+ E+ KR  EL       + 
Sbjct: 942  EDEEIPEEELSLEDVQAELQRVEEEIRALE-PVNMLAIQEYEEVLKRLDEL-------KE 993

Query: 561  QLETMASEKAA 571
            +   +  E+ A
Sbjct: 994  KRAKLEEERKA 1004

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 2/234 (0%)

Query: 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
            +E ++L E    LK  I   + + + L      L + L+E +    +L+E + A +E  
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366
              E  +++LEQ L+  +    ++E  L+  L       E L   +  L+ + A     L
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAE--EERAAHNATKMAAMEREVELE 424
             L+  +ES+    E    R+     E         E   E    N       E+  EL 
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478
            R  E    LA +Q        +   LE ++  LE E    Q     +EA    
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 61/327 (18%), Positives = 128/327 (39%), Gaps = 33/327 (10%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           ++ G               + LQ  +     L+  L + +   R  E R+ +L QELS  
Sbjct: 655 MTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA 714

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
                               +I  +   I+ L+++    +  L  L+ ++ S+ +  E  
Sbjct: 715 S------------------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-N 755

Query: 384 ETRMIQALREELASVERRAEEERAAHNATK-MAAMEREVELEHRAAEASMALARIQRIAD 442
               ++ L   +  +E    +   A N  +   +  R  E++   ++    ++RI+    
Sbjct: 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815

Query: 443 ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERAR 502
           E   K   L  +   LE E   LQ++  D++ ++K  +K+  E  N   +  ++E+E   
Sbjct: 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEELEELE 874

Query: 503 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL 562
              RD E++L  L+ E  ++  ++  ++R  E        ELE +  +    L   + +L
Sbjct: 875 AALRDLESRLGDLKKERDELEAQLRELERKIE--------ELEAQIEKKRKRLSELKAKL 926

Query: 563 ETMASEKAAAEFQLEKEMNRLQEVQSE 589
           E +  E +    ++E      +E+  E
Sbjct: 927 EALEEELS----EIEDPKGEDEEIPEE 949

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 63/302 (20%), Positives = 125/302 (41%), Gaps = 25/302 (8%)

Query: 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354
           LEEL   E  + R  +  I +  Q+L   + E  K E   A     +  E   L+   +A
Sbjct: 176 LEELEEVEENIER-LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA 234

Query: 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM 414
           L++Q    E  LASL+  +E +        T  I  L + L  +E+  EE        K+
Sbjct: 235 LERQKEAIERQLASLEEELEKL--------TEEISELEKRLEEIEQLLEEL-----NKKI 281

Query: 415 AAM--EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472
             +  E ++ ++ +  E    +A ++R   E+  +  + E+++A LE E   L  E++++
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341

Query: 473 EARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 532
           E  ++  +K+             +E    ++   D   +L  ++ E  + R E+   +  
Sbjct: 342 EREIEEERKRR--------DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393

Query: 533 AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAER 592
            E   RE   EL++    L + L     +L  + +  A  E ++ +     ++   E ++
Sbjct: 394 LEKLKRE-INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452

Query: 593 SR 594
             
Sbjct: 453 QE 454

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 61/316 (19%), Positives = 134/316 (42%), Gaps = 45/316 (14%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
           L    +EY+     L+E    ER+     E ++  LE+EL     ++T+  S L + L  
Sbjct: 216 LLKEKREYEG-YELLKEKEALERQKEAI-ERQLASLEEELE----KLTEEISELEKRLEE 269

Query: 341 KNSEIETLVSSIDALKKQAALS-EGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399
               +E L   I  L ++  L  +  +  L+  + S+ R+    E  +     E+     
Sbjct: 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL-----EDAEERL 324

Query: 400 RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE 459
            + E E     A ++  +ERE+E E +  +       +     E   +  +L  ++  ++
Sbjct: 325 AKLEAEIDKLLA-EIEELEREIEEERKRRDK------LTEEYAELKEELEDLRAELEEVD 377

Query: 460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEV 519
            E A  + EL+D   +L++ +++   E  + +   Q+E++R  +   D    ++ +EA+ 
Sbjct: 378 KEFAETRDELKDYREKLEKLKREI-NELKRELDRLQEELQRLSEELADLNAAIAGIEAK- 435

Query: 520 QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE---FQL 576
                                  ELE+   +    +  ++ +LE +A++ +  E   + L
Sbjct: 436 ---------------------INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

Query: 577 EKEMNRLQEVQSEAER 592
           ++E +R+++  S+ +R
Sbjct: 475 KEEYDRVEKELSKLQR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 51/254 (20%), Positives = 97/254 (38%), Gaps = 9/254 (3%)

Query: 218 ESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARV 277
            + L++ + K+E L      +  +  +   KE   L      L+      + + A L R 
Sbjct: 259 TAELQELEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317

Query: 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337
              L ++L+E +S+  +L E L    E     +  ++ LE EL     E+      L   
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESR 373

Query: 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
           L     ++ETL S +  L+ Q A     +  L+  +E +   RE  +  + + L++   +
Sbjct: 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433

Query: 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
             +  + E            E    LE    E    L   ++  D    +  +L+ ++  
Sbjct: 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 458 LEVECATLQQELQD 471
           LE     LQ+ L+ 
Sbjct: 494 LE----RLQENLEG 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 88/412 (21%), Positives = 168/412 (40%), Gaps = 36/412 (8%)

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RL      L     E +   ++    L  E  + R     ++ L+ +L +  + V + + 
Sbjct: 115 RLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSLQDKLLLLDAAVKRHDG 174

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           N+  A              ++ L ++ A  +  L  L  +++     ++L +    +   
Sbjct: 175 NVITA----VLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLLRAEGES 230

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           E+    + R +  R   +  K     +E  L     ++S A   ++ +  E       ++
Sbjct: 231 EKQELQQYRQKAHRILQSKEKRINFLKEGCL-FEGLDSSTAQIELEELKHESE----HVQ 285

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQ---KKSPEEANQAI---QAWQDEVERARQ--- 503
           +++  LE +   L+ E QD EA         +K P E +Q I      + E+E   Q   
Sbjct: 286 EEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPRELSQQIAPQITTKQELELYYQELY 345

Query: 504 GQRDAENKLSSL--------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 555
             R+     SS         E+E QK+R  + A  + +         +LE R  +LT  L
Sbjct: 346 HYREDLGNQSSPLNIRLTFRESEKQKLRTALTARAKTSSWS------DLESRLTQLTQSL 399

Query: 556 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPL 615
             KQT LE + +EK A   QLE+ + +L    S +  S + +    +  +DA+ +   PL
Sbjct: 400 VQKQTMLEWLTTEKNALRIQLERLVTQLHSQGSNSAPSSILQEY-VNLTDDAKSRV--PL 456

Query: 616 PLHHR-HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHL 666
            +  +      + + ++AA  +D+  +R   FL RYP  R+ ++ Y+  +HL
Sbjct: 457 AMKDKCFDNRGARRKKRAASSIDTIGIRLGIFLRRYPKDRVSVIVYVALLHL 508

Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1. Length = 509

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 65/335 (19%), Positives = 143/335 (42%), Gaps = 29/335 (8%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL------ 334
           L   ++E K    +LE+ +     +    E  IK+ E+EL     E+ ++ S L      
Sbjct: 167 LGEVIKEIKRRIERLEKFIKRTENI----EELIKEKEKELEEVLREINEISSELPELREE 222

Query: 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE- 393
            E L  +  E+E L   I+ L+K+    EG+   L+  +  +    E  +   I+ L E 
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE-IEELEEK 281

Query: 394 --ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI---ADERTAKA 448
             EL  ++ +AEE     +      ++   E+E R +     +  I+      +E+  + 
Sbjct: 282 VKELKELKEKAEEYIKL-SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 449 GELEQKVAMLEVECATLQ---QELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQ 505
            EL++K+  LE     L+   +  ++ +A+ +  ++          +  + E+E   + +
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400

Query: 506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM------ELEKRYRELTDLLYYKQ 559
            + E ++S + A + +++ E+  +K+  E   + +        EL + +R+  +LL    
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK--ELLEEYT 458

Query: 560 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 594
            +L+ +  E    E +  K    L+E++   ++  
Sbjct: 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 80/387 (20%), Positives = 159/387 (41%), Gaps = 24/387 (6%)

Query: 221 LKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLAR 276
           +K+A  K+E L  +  +     +D     +++L E + L +          + +   L  
Sbjct: 180 IKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEE 239

Query: 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT---KVESN 333
             A L    +  +   A+L E+   E E  +  E  +++LE+ L   + ++    ++E  
Sbjct: 240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELERE 299

Query: 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE 393
           + E L  +   +  L+  ++ L ++    E  L  L+  +E +       E   +   + 
Sbjct: 300 IEE-LEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLES-----ELEELAEEKN 353

Query: 394 ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453
           ELA +     +E           +E+ +E   +  E   A+  ++    E +A   E+++
Sbjct: 354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEE---AIQELKEELAELSAALEEIQE 410

Query: 454 KVAMLEVECATLQQELQDMEARLK-----RGQKKSPEEANQAIQAWQDEVERARQGQRDA 508
           ++  LE E   L++EL+++E  +K       Q +S E     +    ++     Q   + 
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 509 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 568
             K      E++   +E    +   E   REE  ELEK  REL + L      LE   + 
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELI---ELLELEEAL 527

Query: 569 KAAAEFQLEKEMNRLQEVQSEAERSRV 595
           K   E +LEK  N L+E++   E+ ++
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQL 554

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 85/386 (22%), Positives = 145/386 (37%), Gaps = 25/386 (6%)

Query: 218 ESSLKDADVKVETLSNKRKQ--QALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLA 275
           ES L + D ++E    +R+Q  +     D   +E ++  E    L+  I   +   A   
Sbjct: 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271

Query: 276 RVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           R    L+  +++ +    +LEE    L+AE  L  +    ++   +EL     E+     
Sbjct: 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
               A  A N E E+L    D L+++A       A L+  +E      E      I+ L 
Sbjct: 332 ECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE-IEELE 390

Query: 393 EELASVERR---AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG 449
           EE+  +  R   A  +            E   EL  R AE    L    R A ER  +A 
Sbjct: 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL----RTARERVEEAE 446

Query: 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAE 509
            L +       +C    Q ++           ++ EE  + ++  + E+E   +   + E
Sbjct: 447 ALLE-----AGKCPECGQPVEGSP------HVETIEEDRERVEELEAELEDLEEEVEEVE 495

Query: 510 NKLSSLEAEV-QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 568
            +L   E  V  + R+E    +R+       E  E  +  RE  + L  +  +LE  A E
Sbjct: 496 ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555

Query: 569 KAAAEFQLEKEMNRLQEVQSEAERSR 594
           K  A  + E+E    +E  +E     
Sbjct: 556 KREAAAEAEEEAEEAREEVAELNSKL 581

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 75/394 (19%), Positives = 167/394 (42%), Gaps = 44/394 (11%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS---RSYEARIKQLEQEL 320
           I+   S+   L      L   ++E +    ++EEL      L    R  E +I++LE+ +
Sbjct: 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268

Query: 321 SVYKSEVTKVESNLAE--ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378
              K E+ ++E  + E   L  K  E   L    +    +    E  L+ L+  +  I  
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

Query: 379 NRELTET--RMIQALREELASVERRAEEERAAHNATKMAAMEREVELE-HRAAEASMALA 435
             +  E     ++ L+++L  +E+R EE    H   +  A  ++ ELE  +     +   
Sbjct: 329 RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRLTGLTPE 387

Query: 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA---RLKRGQKKSP-------- 484
           ++++  +E      E+E++++ +      L++E+++++     LK+ + K P        
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 485 EEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR------------- 531
           E   + ++ +  E++R  +  ++ E K   L  E++++   +                  
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507

Query: 532 ---DAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE-KAAAEFQ-----LEKEMNR 582
                + Y+ EE  +  + Y +L + L   + +++++  E +   E +     LEK+++ 
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567

Query: 583 LQEVQSEAERSRVSRRSWSSWEE-DAEMKSLEPL 615
           L+E  +E  +  +    + S EE +  +K LEP 
Sbjct: 568 LEEELAELLK-ELEELGFESVEELEERLKELEPF 600

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 8e-05
 Identities = 76/400 (19%), Positives = 164/400 (41%), Gaps = 15/400 (3%)

Query: 217  SESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLAR 276
            ++ + K  + K    + K+ ++A KAD+   K ++   +A    K      ++ EA  A 
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351

Query: 277  V-CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335
               A   +   E K+E A+ ++    ++  +   +A  K+   E      E  K    L 
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411

Query: 336  EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395
            +A AAK           D  KK+A   +      +   E   +  E  +        EE 
Sbjct: 1412 KAAAAKKKA--------DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 396  ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455
               +++AEE + A  A K A   ++ +   + AE +   A   + A E   KA E ++  
Sbjct: 1463 ---KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519

Query: 456  AMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQ-DEVERARQGQRDAENKLSS 514
               + + A   +E +  +   K  +KK  +E  +A +  + +E ++A + ++  E+K  +
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579

Query: 515  LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA-E 573
            L    +  + E A ++   + Y  E+ M+ E+  +     +  ++ +      +K    +
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

Query: 574  FQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 613
             +  +E  + +E++   E +++     +   E+ + K+ E
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 13/224 (5%)

Query: 380 RELTETRMIQALREELASVER-RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ 438
            EL E       +            +E            +   EL  + +     LAR++
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEV 498
              ++   +  +L +++  LE E   L++ L++ E  L   + +  EE    I+  ++E+
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI-EELEAQIEQLKEEL 798

Query: 499 ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 558
           +  R+   +   +L+ L  E   +R  + +++R             E+R  +L + +   
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIA--------ATERRLEDLEEQIEEL 850

Query: 559 QTQLETMASEKAAAEFQLEK---EMNRLQEVQSEAERSRVSRRS 599
              +E++A+E    E  +E+   E+  L   ++  E +    RS
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 44/250 (17%), Positives = 98/250 (39%), Gaps = 18/250 (7%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
           L     E  ++  +L E     +E       +++ LE +L   + E+ +  S     LAA
Sbjct: 265 LQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAA 324

Query: 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400
             SE+E L     A +        ++  LQ +++          + + + +   L ++  
Sbjct: 325 DRSELELLEDQKGAFEDA------DIEQLQADLD----QLPSIRSEL-EEVEARLDALTG 373

Query: 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMAL--ARIQRIADERTAKAGELEQKVAML 458
           + ++ +  +   K    E+      +  E   A+   + ++ A           Q    L
Sbjct: 374 KHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQL 433

Query: 459 EVECATLQQELQDMEARLKR--GQKKSP---EEANQAIQAWQDEVERARQGQRDAENKLS 513
           E       +E  ++E RL R   +  S     E  + ++   + +E+A++ Q  AE  + 
Sbjct: 434 EAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVE 493

Query: 514 SLEAEVQKMR 523
            L++E++++R
Sbjct: 494 QLQSELRQLR 503

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 69/385 (17%), Positives = 156/385 (40%), Gaps = 27/385 (7%)

Query: 233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSEN 292
            +  ++ ++  +   +E ++L+E    L+  +   +    +L  +   L    ++ +   
Sbjct: 283 LEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLE 342

Query: 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT----------KVESNLAEALAAKN 342
           ++LEEL   + EL++  E R+K+LE+ L   + E+           +    L E LA  +
Sbjct: 343 SELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS 402

Query: 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESI--MRNRELTETRMIQALREE-----L 395
           + +E +   ++ L+K+    E  L  L+  ++ +    N+  ++  MI  L        +
Sbjct: 403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPV 462

Query: 396 ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455
              E   E E+      ++   E E EL  R  E +     I+ +  E      EL + +
Sbjct: 463 CGQELPEEHEKELLELYELELEELEEEL-SREKEEAELREEIEELEKELRELEEELIELL 521

Query: 456 AMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQ---GQRDAENKL 512
            + E     L+++L+ +E  L+  ++   +   Q ++    ++E   Q      +    L
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581

Query: 513 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ--TQLETMASEKA 570
            + + E++++R  +  +K+  +        +LE+  + L       +     E + SE  
Sbjct: 582 RTRKEELEELRERLKELKKKLKELEERLS-QLEELLQSLELSEAENELEEAEEELESELE 640

Query: 571 AAEFQL---EKEMNRLQEVQSEAER 592
               Q    E     L+E++ + E 
Sbjct: 641 KLNLQAELEELLQAALEELEEKVEE 665

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 24/266 (9%)

Query: 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368
              R+++LE EL   + EV +VE  L  A     +E       I+ L+++    E  +A 
Sbjct: 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE-----DRIERLEERREDLEELIAE 527

Query: 369 LQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAA---MEREVELEH 425
            +   E+I   RE  E      LRE  A +E  AEE+R A    +  A    E   EL  
Sbjct: 528 RR---ETIEEKRERAEE-----LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579

Query: 426 RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL--KRGQKKS 483
           + AE    +  ++RI     A   + E ++  L  +   L +   +   RL  KR +K+ 
Sbjct: 580 KLAELKERIESLERIR-TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638

Query: 484 PEEA--NQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS--RE 539
            E       I+  +++ ERA +     E KL  L  E   ++ E+ A++ + E     RE
Sbjct: 639 LEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRE 698

Query: 540 EHMELEKRYRELTDLLYYKQTQLETM 565
               LE R   L   LY +  +LE+M
Sbjct: 699 RREALENRVEALEA-LYDEAEELESM 723

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 218  ESSLKDADVKVETLSNKRKQQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARL 274
            E +L     ++E L  KR+    + ++   + ++   +LD  +  L++     +  E  +
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 275  ARV----------CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324
              +             L   L+E + E  +L+E L          E  +K+LE+E    +
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 325  SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI----MRNR 380
             E+ ++ES LAE       EIE L   ++ L+ +    E  L  L+  +E      +   
Sbjct: 891  EELRELESELAEL----KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946

Query: 381  ELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI 440
               E   ++   E L  V  RA EE            ER  EL+ +  +   A  ++  +
Sbjct: 947  LEREIERLEEEIEALGPVNLRAIEEYE-------EVEERYEELKSQREDLEEAKEKLLEV 999

Query: 441  ADERTAK 447
             +E   +
Sbjct: 1000 IEELDKE 1006

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 34/205 (16%), Positives = 79/205 (38%), Gaps = 18/205 (8%)

Query: 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467
               T  + +ER  E+E    +    +  ++    E      EL +++  LE E   L++
Sbjct: 664 GSAKTNSSILERRREIEELEEK----IEELEEKIAELEKALAELRKELEELEEELEQLRK 719

Query: 468 ELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMR---- 523
           EL+++  ++    +K        ++  ++ + +  +   + E ++  LE  +++      
Sbjct: 720 ELEELSRQI-SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778

Query: 524 ---VEMAAMKRDAEHYS------REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 574
               E+  ++   E         RE   EL      L +     + +LE++    AA E 
Sbjct: 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838

Query: 575 QLEKEMNRLQEVQSEAERSRVSRRS 599
           +LE    +++E+  + E        
Sbjct: 839 RLEDLEEQIEELSEDIESLAAEIEE 863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 57/307 (18%), Positives = 119/307 (38%), Gaps = 29/307 (9%)

Query: 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328
           S+E   A +   +    +E +    +L ELL  E  L    E ++++LE  L   +    
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550

Query: 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388
           K++    + L  +  ++E  +  +  L ++  L       L+   E +         + +
Sbjct: 551 KLQL---QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL---------KEL 598

Query: 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA 448
           +   +EL     + EE   +         E E ELE    E    L ++   A+      
Sbjct: 599 KKKLKELEERLSQLEELLQSLEL-----SEAENELEEAEEELESELEKLNLQAELEELLQ 653

Query: 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDA 508
             LE+    +E   A +++ELQ +E   +  +K       + ++  ++E+E+ R+   + 
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEK------LEELEQLEEELEQLREELEEL 707

Query: 509 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL-YYKQTQLETMAS 567
             KL  +E  ++++    A ++       ++E  +LEK    L +L     +  L     
Sbjct: 708 LKKLGEIEQLIEELESRKAELEEL-----KKELEKLEKALELLEELREKLGKAGLRADIL 762

Query: 568 EKAAAEF 574
               A+ 
Sbjct: 763 RNLLAQI 769

Length = 908

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389
            +  L+  ++ K+S ++ L S I  L    +L       LQ                 + 
Sbjct: 40  AQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQ---------------DSVA 84

Query: 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG 449
            LR  L++ E  AE  R      ++A        E RA E +  L   ++++    A+  
Sbjct: 85  NLRASLSAAE--AERSRLQALLAELAGAGAA--AEGRAGELAQELDSEKQVSARALAQVE 140

Query: 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482
            L Q++A L  + A L+  L   E R +  Q K
Sbjct: 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAK 173

Length = 343

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 6/183 (3%)

Query: 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQA 493
           LA ++   ++ T +  ELE+++  +E     L ++++D+    +   K+   E    I +
Sbjct: 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305

Query: 494 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR------EEHMELEKR 547
            +  +    +   DAE +L+ LEAE+ K+  E+  ++R+ E   +      EE+ EL++ 
Sbjct: 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365

Query: 548 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDA 607
             +L   L     +      E      +LEK    + E++ E +R +   +  S    D 
Sbjct: 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425

Query: 608 EMK 610
              
Sbjct: 426 NAA 428

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 443 ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERAR 502
           ER  +  ELE+K+  LE + A L++ L ++   L        EE  + ++  + E+E   
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL--------EELEEELEQLRKELEELS 725

Query: 503 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL 562
           +        L+ LEAEV+++   +A + ++       E  ELE+R  E  + L   + ++
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTEL-EAEIEELEERLEEAEEELAEAEAEI 784

Query: 563 ETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAE 608
           E + ++    + +L+     L E+++E         +     E  E
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333
           L+R  +G  S L    S+ A+L +LL  ER+ ++  +  +  L   LS  ++E +++++ 
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE 393
           LAE   A             A + +A      L S +      +   EL   + I ALR 
Sbjct: 104 LAELAGA-----------GAAAEGRAGELAQELDSEKQVSARALAQVELL-NQQIAALRR 151

Query: 394 ELASVER--RAEEERAAHNATKMAAMERE--VELEHRAAE 429
           +LA++E    A E+R   +  K+A + R   V L  R  E
Sbjct: 152 QLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQE 191

Length = 343

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 80/380 (21%), Positives = 152/380 (40%), Gaps = 33/380 (8%)

Query: 234  KRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293
            ++ ++A KA+D    E  +  E     +       +K+A  AR    +    +  K+E+A
Sbjct: 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199

Query: 294  QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353
            +  E      E  ++ EAR  +  ++       V K E    +A  AK +E E     I 
Sbjct: 1200 RKAEAARKAEEERKAEEARKAEDAKKAE----AVKKAEEAKKDAEEAKKAEEERNNEEI- 1254

Query: 354  ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK 413
              +K       + A  Q  +++        E R    L++  A  +++A+E + A    K
Sbjct: 1255 --RKFEEARMAHFARRQAAIKA-------EEARKADELKK--AEEKKKADEAKKAEEKKK 1303

Query: 414  MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473
                +++ E   +A EA       ++ AD    KA E ++     + E      E +  E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Query: 474  ARLKRGQKKSPEEANQAIQAWQ--DEVERARQGQRDAENKLSSLE----AEVQKMRVEMA 527
             + +  +KK  E   +A  A +  +E ++A + ++ AE      +    A   K + + A
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

Query: 528  AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK--EMNRLQE 585
              K+ AE   + +  E +K+  E       K  + +  A E   AE   +K  E  +  E
Sbjct: 1424 --KKKAEEKKKAD--EAKKKAEEAK-----KADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474

Query: 586  VQSEAERSRVSRRSWSSWEE 605
             + +AE ++ +  +    EE
Sbjct: 1475 AKKKAEEAKKADEAKKKAEE 1494

Length = 2084

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 14/220 (6%)

Query: 385 TRMIQALREELASVERRAEEERAAH----NATKMAAMEREVELEHRAAEASMALARIQRI 440
              ++     L   E R +E ++A          A +E  +      A A  AL  +Q I
Sbjct: 686 DERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNI 745

Query: 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ-KKSPEEANQAIQAWQD--- 496
             E+   A +L Q++A +E + A  ++E++ +   +         +E  +A++       
Sbjct: 746 -KEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRAR 804

Query: 497 ----EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 552
                 E+  +   +AE ++S   A + +    + A+ R A   + EE +   +R     
Sbjct: 805 DTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYR 864

Query: 553 DLLYYKQTQLETMASEKAAAEFQ-LEKEMNRLQEVQSEAE 591
           +L         T+         + L  E   L   +  A 
Sbjct: 865 ELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPAR 904

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 37/173 (21%), Positives = 82/173 (47%), Gaps = 7/173 (4%)

Query: 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQA 493
           L  ++    E  A+  +LE+++  L+ E  +L+  L+++  +L    ++  EE  + + A
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL-EELERQLEELKRELAA 727

Query: 494 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS------REEHMELEKR 547
            ++E+E+ +    + E +L  LE E+++++  +  ++ + E         +EE  ELE++
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 548 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSW 600
            + L + L   + +LE       A E +LE    R + ++ E E         
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840

Length = 1163

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 31/257 (12%)

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q A  +  L  +   +  +       E    QA  + L  V+             +  
Sbjct: 299 RRQLAAEQYRLVEMARELAELNEAESDLEQD-YQAASDHLNLVQ----TALRQQEKIERY 353

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
             + E ELE R  E +  +       +E  A+A   E++V  L+ + A  QQ L   + R
Sbjct: 354 QADLE-ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTR 412

Query: 476 ----------LKRGQKK------SPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEV 519
                     L+R ++       + + A   ++ +Q + + A +     E KLS  +A  
Sbjct: 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472

Query: 520 QKMRVEMAAMKRDAEHYSREE----HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 575
            +       +++ A   SR E      EL +R RE   L      QL+ +    +  E +
Sbjct: 473 SQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA----EQLQQLRMRLSELEQR 528

Query: 576 LEKEMNRLQEVQSEAER 592
           L ++  R + + +E  +
Sbjct: 529 LRQQ-QRAERLLAEFCK 544

Length = 1486

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 24/237 (10%)

Query: 314 KQLEQELSVYKSEVTKVESNLAEA---LAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370
              +++L   + E+  +E  + E     A    ++++L + I +L+ Q   +  +L  L+
Sbjct: 34  AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR 93

Query: 371 MNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA 430
             +  +           + AL  +     RR  E+ AA   +        +     A  +
Sbjct: 94  KQIADLNAR--------LNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRS 145

Query: 431 SMALARIQRIADERTAKAGELEQ---KVAMLEVECATLQQELQDME----------ARLK 477
                    +   R  +   L+    ++A +  E A  Q EL  +           A+L 
Sbjct: 146 VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLL 205

Query: 478 RGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 534
             +KK+  + N  + A Q ++E  R  +   +N+++S EA   K R   AA +  A 
Sbjct: 206 EERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262

Length = 420

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 63/358 (17%), Positives = 131/358 (36%), Gaps = 61/358 (17%)

Query: 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS-----------------YE 310
           Q  +    +    +++ +   K++N  L E +    ++S+                  YE
Sbjct: 256 QELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYE 315

Query: 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370
             +  ++Q+   +  ++ K++S +      K  EI+ L S+ID L KQ      +    +
Sbjct: 316 NYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGISTEQFE 371

Query: 371 -MNMESIMRNRELTETRM-IQALREELASVERRAEE------------ERAAHNATKMAA 416
            MN E     REL +  +    L + + S +  A+             +    N T+  +
Sbjct: 372 LMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS 431

Query: 417 --------MEREVELEHRAAEASMALARIQRIADERTAKAGE-----------LEQKVAM 457
                      ++ +E    + S     I++   E   +  E           LE+ +  
Sbjct: 432 QIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN 491

Query: 458 LEVECATLQQELQDMEARLKRGQKK---SPEEANQAIQAWQDEVERARQGQRD----AEN 510
           L+ +   L Q L+ +E  L     K   S EE  + + A + E+E+  +   D    ++ 
Sbjct: 492 LKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKT 551

Query: 511 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 568
            +   E  VQ   +++  +K D      + H ++       +      Q+ LE + +E
Sbjct: 552 SILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENE 609

Length = 622

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 58/287 (20%), Positives = 102/287 (35%), Gaps = 12/287 (4%)

Query: 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCA-GLSSRLQEYKSENAQLEELLVAERELS 306
           +E+ +LD     L+      +++   L    A   +  L+  +++   L+      R+  
Sbjct: 297 EEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAI 356

Query: 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGN 365
           R  E+R+++  + L      +   E  L  A        E   +S     +  AAL+   
Sbjct: 357 REAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQE 416

Query: 366 LASLQMNMESIMRNRELTETRMIQALREELASVERR---AEEERAAHNATKMAAMEREVE 422
           L  L       +  R     R+I    E++A + RR   A+   A H A +    E + E
Sbjct: 417 LQEL-----GALDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEE 471

Query: 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME--ARLKRGQ 480
            E  AA A +A   + R             Q   +  +        L D++    L +G+
Sbjct: 472 AEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGE 531

Query: 481 KKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 527
                    A+Q   DE+ R R   R AE  L      ++  R  + 
Sbjct: 532 APVRVAVYSAVQPLADELTRERAALRLAEEVLEEERDALRTERERLE 578

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 48/327 (14%), Positives = 116/327 (35%), Gaps = 41/327 (12%)

Query: 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSY 309
           + +L E     +  +   QS  A+  +    L          NA+LEE   AE E   + 
Sbjct: 602 ETELRERLQQAEEAL---QSAVAKQKQAEEQLVQA-------NAELEEQKRAEAEARTAL 651

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS- 368
           +     L++  +  +S   K+E  +AE      +++  L + +  L +Q       L   
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711

Query: 369 ---LQMNMESIMR----NRELTETRMIQALREELASVERRAEE-ERAAHNATK------- 413
              L+    +  +      +    ++  A+       + R +E ++              
Sbjct: 712 FRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPN 771

Query: 414 -MAAMEREVE-LEHRAAEASM---ALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
            +  ++R++E LE      ++    +   +    E       L ++   L ++   L+  
Sbjct: 772 TVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESS 831

Query: 469 LQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 528
            ++++  L R  K +     +        +E+ R+      ++L  L   ++    ++A 
Sbjct: 832 AEELQQELTRLIKDTKLRRKK--------LEQERKALEKQLDQLDELLRGLRDEMRQLAE 883

Query: 529 MKRDAEHYSREEHMELEKRYRELTDLL 555
           +K  A   + +    + +R  +L +  
Sbjct: 884 LKEPAN--ANQAEGSISERLDQLEEFK 908

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 15/186 (8%)

Query: 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361
           E      Y+  I+QLE+ +  Y+S + K    L E++     E       ++ LK     
Sbjct: 273 EAHFDEEYQELIEQLEELIDKYESHIEKALEEL-ESILDTEKENSEFKLDVEELKALLEA 331

Query: 362 ----SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417
                E NL  L+  ++    + EL     I  L E +  +     E    HN  K+  +
Sbjct: 332 LEEILEKNLQKLEEKLKDPSTSIELES---ITDLIESINDIIDAINELIREHNE-KIDNL 387

Query: 418 EREVEL------EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471
           ++E          H  AE    +   Q+           LE+++  LE E   L++E+++
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447

Query: 472 MEARLK 477
           +E +L 
Sbjct: 448 LEKQLT 453

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional

 Score = 40.2 bits (93), Expect = 0.004
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
           EA + +L+++LS  +  +T  +  LA ALA   S+  ++ S+ DA +KQA   E  L + 
Sbjct: 20  EAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQA---EQALGAQ 76

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRA 402
              ++S+++N +    R+++A    ++  +R+A
Sbjct: 77  TNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQA 109

Length = 510

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	699
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	100.0
KOG4677	554	consensus Golgi integral membrane protein [Intrace	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.58
KOG0963	629	consensus Transcription factor/CCAAT displacement	99.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.91
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.89
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.88
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.86
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.82
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	98.79
PRK02224	880	chromosome segregation protein; Provisional	98.77
PRK02224	880	chromosome segregation protein; Provisional	98.74
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.74
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.66
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.6
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	98.56
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.56
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.54
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.53
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.52
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.51
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.43
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.41
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.4
PRK03918	880	chromosome segregation protein; Provisional	98.39
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.39
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.33
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.33
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.32
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.31
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.29
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.24
PRK04863	1486	mukB cell division protein MukB; Provisional	98.23
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.22
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.21
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.2
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.14
PRK03918	880	chromosome segregation protein; Provisional	98.12
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.09
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.09
PRK04863	1486	mukB cell division protein MukB; Provisional	97.99
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.99
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.96
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.95
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.93
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.9
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.87
PRK11637	428	AmiB activator; Provisional	97.87
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.85
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.75
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.69
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.68
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.66
PRK11637	428	AmiB activator; Provisional	97.65
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.62
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.55
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.52
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.52
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.4
PHA02562	562	46 endonuclease subunit; Provisional	97.36
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.33
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.3
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.29
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.29
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.28
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.26
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.25
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.24
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.23
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.15
PRK09039	343	hypothetical protein; Validated	97.14
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.08
PRK11281	1113	hypothetical protein; Provisional	97.07
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.05
PF13514	1111	AAA_27: AAA domain	96.99
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.96
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.96
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.96
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.87
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.86
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.85
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.84
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.78
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.73
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.7
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.7
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.66
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.63
PRK09039	343	hypothetical protein; Validated	96.62
PRK04778	569	septation ring formation regulator EzrA; Provision	96.6
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.59
PRK01156	895	chromosome segregation protein; Provisional	96.57
PRK01156	895	chromosome segregation protein; Provisional	96.46
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.43
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.43
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.41
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.39
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.36
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.34
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.26
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.24
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.16
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.14
COG4372	499	Uncharacterized protein conserved in bacteria with	96.06
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.92
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.92
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.83
PF14992	280	TMCO5: TMCO5 family	95.75
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	95.69
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	95.66
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.66
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.64
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	95.63
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.63
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.61
COG4372	499	Uncharacterized protein conserved in bacteria with	95.61
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.58
PRK11281	1113	hypothetical protein; Provisional	95.47
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.47
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.41
PF13514	1111	AAA_27: AAA domain	95.28
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.15
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.06
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.04
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.95
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.91
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.88
KOG1937	521	consensus Uncharacterized conserved protein [Funct	94.88
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.76
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.76
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.67
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.61
KOG4677	554	consensus Golgi integral membrane protein [Intrace	94.57
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.56
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.51
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.46
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.46
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.43
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.3
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.22
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.09
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.05
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.95
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.93
PRK10884	206	SH3 domain-containing protein; Provisional	93.83
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.78
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.71
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	93.62
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.54
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.38
PRK04778	569	septation ring formation regulator EzrA; Provision	93.38
PRK10246	1047	exonuclease subunit SbcC; Provisional	93.37
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.26
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.04
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.04
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.93
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.8
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.74
KOG0018	1141	consensus Structural maintenance of chromosome pro	92.69
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.35
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.33
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.05
PRK10884	206	SH3 domain-containing protein; Provisional	92.04
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	91.99
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.64
KOG1003	205	consensus Actin filament-coating protein tropomyos	91.39
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.13
PLN03188	1320	kinesin-12 family protein; Provisional	91.12
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	90.91
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	90.87
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	90.87
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	90.82
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.79
PRK10246	1047	exonuclease subunit SbcC; Provisional	90.03
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	90.01
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.74
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.21
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.19
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	89.14
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	89.07
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.86
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	88.83
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.55
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.38
COG2433	652	Uncharacterized conserved protein [Function unknow	88.21
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	88.17
PLN02939	977	transferase, transferring glycosyl groups	88.08
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.96
KOG4807	593	consensus F-actin binding protein, regulates actin	87.77
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	87.63
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	87.55
KOG4807	593	consensus F-actin binding protein, regulates actin	87.47
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.18
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.18
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.14
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	86.99
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	86.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.81
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	86.64
PLN02939	977	transferase, transferring glycosyl groups	86.62
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	86.41
PRK10361	475	DNA recombination protein RmuC; Provisional	86.38
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.26
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	86.24
COG4477	570	EzrA Negative regulator of septation ring formatio	85.95
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	85.89
COG2433	652	Uncharacterized conserved protein [Function unknow	85.85
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	85.47
KOG0249	916	consensus LAR-interacting protein and related prot	85.33
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	85.06
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	84.8
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	84.41
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	84.22
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	83.99
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	83.93
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.71
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	82.16
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	81.94
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	81.26
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	81.11
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	81.04
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	80.99
PRK10698	222	phage shock protein PspA; Provisional	80.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	80.43
KOG0992	613	consensus Uncharacterized conserved protein [Funct	80.13
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	80.07

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=100.00  E-value=1.1e-32  Score=309.23  Aligned_cols=376  Identities=26%  Similarity=0.342  Sum_probs=252.2

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----HHH---------H-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          269 SKEARLARVCAGLSSRLQEYKSENAQLEEL----LVA---------E-RELSRSYEARIKQLEQELSVYKSEVTKVESNL  334 (699)
Q Consensus       269 ~ke~qLa~~~aRLrK~~~ELkke~aqLEe~----l~e---------l-qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~  334 (699)
                      +...+++++..+|.+..+|++..+.++++.    .+.         + ....+.|+.++..|+.++.............|
T Consensus       106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~f  185 (511)
T PF09787_consen  106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEF  185 (511)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            345599999999999999999999999987    221         1 12336788888899999988888888888888


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hh---hHHHHHHHHHHHHHHHHH-HHH
Q 005378          335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR-------EL---TETRMIQALREELASVER-RAE  403 (699)
Q Consensus       335 ~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~-------s~---~Eke~lqSLE~eLkslQ~-aLe  403 (699)
                      ..+...++..+..|..+..++.. +..-.....+++...+.+....       .+   .+..++++++..+.+|+. .+.
T Consensus       186 l~rtl~~e~~~~~L~~~~~A~~~-~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~  264 (511)
T PF09787_consen  186 LKRTLKKEIERQELEERPKALRH-YIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE  264 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            89999999999999988885543 3334434444444433333333       22   367888888888888887 333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccC-
Q 005378          404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK-  482 (699)
Q Consensus       404 ~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk-  482 (699)
                      .....+..+ +    -+..+..+...+-+-+..+++.+..-+..+.+++.++..   ..+.+++..+.+.........+ 
T Consensus       265 ~~~~~~~~~-~----el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~e  336 (511)
T PF09787_consen  265 EGFDSSTNS-I----ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTTE  336 (511)
T ss_pred             cccccccch-h----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhchH
Confidence            222221111 1    122233344444445556666666666666665554333   3333334333333333322222 


Q ss_pred             -ChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHH
Q 005378          483 -SPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQ  561 (699)
Q Consensus       483 -~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~q  561 (699)
                       ......+++.-+++++.+.+.   .+..++...+.|+++|+.++...-      +..+..+||.||+.||+.|++||++
T Consensus       337 ~e~~l~~~el~~~~ee~~~~~s---~~~~k~~~ke~E~q~lr~~l~~~~------~~s~~~elE~rl~~lt~~Li~KQ~~  407 (511)
T PF09787_consen  337 AELRLYYQELYHYREELSRQKS---PLQLKLKEKESEIQKLRNQLSARA------SSSSWNELESRLTQLTESLIQKQTQ  407 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHh------ccCCcHhHHHHHhhccHHHHHHHHH
Confidence             111112223334444443322   245788899999999999987622      1234679999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCcccccccccccCCCccc-cccchhhhHHHHHHHhHHhh
Q 005378          562 LETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLEPLPLH-HRHIAGASVQLQKAAKLLDS  638 (699)
Q Consensus       562 lE~L~~Er~sL~~qLE~~~~~a~~~~~~~~~sr~sr~~--s~~~~dd~~~~~~~p~~~~-~~~~~~~~rrvk~A~~~lDs  638 (699)
                      ||.|.+||++|.+|||++...+++ .+  ...+.++..  ++.|.+|..  ...|.++. .+|.+++++||++||++||+
T Consensus       408 lE~l~~ek~al~lqlErl~~~l~~-~~--~~~~~~~~~~~~~~~~~d~~--~r~~~~~~~~~~d~~~~~r~~~a~~~iD~  482 (511)
T PF09787_consen  408 LESLGSEKNALRLQLERLETQLKE-EA--SNNRPSSILMKYSNSEDDAE--SRVPLLMKDSPHDIGVARRVKRAASVIDS  482 (511)
T ss_pred             HHHHHhhhhhccccHHHHHHHHHh-hc--cCCCCchhhHhhccCCCchh--hhhhhhccCCCccchHHHHHHHHHHHHhH
Confidence            999999999999999999999986 21  111222222  223444433  33555444 46677899999999999999


Q ss_pred             hhHhHhHHhhcchhHHHHHHHHHHHHHHH
Q 005378          639 GAVRATRFLWRYPIARIILLFYLVFVHLF  667 (699)
Q Consensus       639 ~slr~g~fLRRyP~aRl~~l~Y~vlLHlW  667 (699)
                      |+||+|+||||||++|+||||||++||||
T Consensus       483 ~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  483 FSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             hhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=263.08  Aligned_cols=307  Identities=15%  Similarity=0.159  Sum_probs=220.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT  412 (699)
Q Consensus       333 ~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~T  412 (699)
                      ++.++-+.++++.   ..||++..+.++-.-..++..                ..+.+++.+|+-+.+++..+...+..+
T Consensus       172 d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~----------------Sal~~lq~~L~la~~~~~~~~e~~i~~  232 (554)
T KOG4677|consen  172 DYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF----------------SALRSLQDKLQLAEEAVSMHDENVITA  232 (554)
T ss_pred             hHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH----------------HHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            4556655566554   778777777666555555444                157888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHH--
Q 005378          413 KMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK-KSPEEANQ--  489 (699)
Q Consensus       413 k~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qq-k~~~~~~q--  489 (699)
                      ...|..|...+|.+...+.+++.-+.++|.+.+.+++++..++....  +...+++|-++..+..++-+ +.+..+.+  
T Consensus       233 ~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E  310 (554)
T KOG4677|consen  233 VLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKE  310 (554)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHH
Confidence            99999999999999999999999999999999999999999888655  77889999999888887743 33321111  


Q ss_pred             --------------------HHHHHHHHHHHHHHhHHHH-----------------------------------------
Q 005378          490 --------------------AIQAWQDEVERARQGQRDA-----------------------------------------  508 (699)
Q Consensus       490 --------------------ei~~leeEl~r~r~~~~~l-----------------------------------------  508 (699)
                                          .+-.|..++..+.+..+.+                                         
T Consensus       311 ~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~  390 (554)
T KOG4677|consen  311 FEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGT  390 (554)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhh
Confidence                                0111222222111111100                                         


Q ss_pred             ---------HHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          509 ---------ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       509 ---------e~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~  579 (699)
                               +.+|-..+.+|++|.+.++. + -   . ......++++.+.||+.|++||.++|++..+++.|.++||++
T Consensus       391 ~~~r~~~~~qski~dk~~el~kl~~~l~~-r-~---~-~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerL  464 (554)
T KOG4677|consen  391 FSSRVNLKKQSKIPDKQYELTKLAARLKL-R-A---W-NDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERL  464 (554)
T ss_pred             hhhhccchhhccCcchHHHHHHHHHHHHH-H-h---h-hhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence                     01222334444444444321 0 0   0 113678899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCcccccccccccCCCccccccchhhhHHHHHHHhHHhhhhHhHhHHhhcchhHHHHHHH
Q 005378          580 MNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLF  659 (699)
Q Consensus       580 ~~~a~~~~~~~~~sr~sr~~s~~~~dd~~~~~~~p~~~~~~~~~~~~rrvk~A~~~lDs~slr~g~fLRRyP~aRl~~l~  659 (699)
                      +...-  .+        +-....+++.+.+......+..++.+..+ .++++|++.||+|++++|.|||+||.||||+++
T Consensus       465 q~~~N--~~--------~~v~~~~~~n~~~~~~~~v~~l~~d~~~~-~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~  533 (554)
T KOG4677|consen  465 QEYVN--LV--------EDVDTKLNLNTKFKCHDVVIDLYRDLKDR-QQLRAARSKVDKGSAELEKILRLLPSARIFWKN  533 (554)
T ss_pred             HHHhc--cc--------cccceeeccCCCcccccccchHhhhhhhh-HHHHHHHhhcchhhHHHHHHHhcCchhHHHHHH
Confidence            76421  10        11122333333333333334444554454 899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 005378          660 YLVFVHLFLMYLLHRLQE  677 (699)
Q Consensus       660 Y~vlLHlWVm~vL~~~~~  677 (699)
                      ||++|||||||||++|||
T Consensus       534 YmallHLWvmivlLTYTP  551 (554)
T KOG4677|consen  534 YMALLHLWVMIVLLTYTP  551 (554)
T ss_pred             HHHHHHHHHHHHHhhcCc
Confidence            999999999999999999

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1e-12  Score=155.42  Aligned_cols=316  Identities=16%  Similarity=0.147  Sum_probs=241.7

Q ss_pred             hhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005378          239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ  318 (699)
Q Consensus       239 ~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~  318 (699)
                      ..-.++|.+++.+||++++..+++|++.           +.+|++-.+++.+...++++..+.+.+++..|+.....|-.
T Consensus       534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~  602 (1317)
T KOG0612|consen  534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK  602 (1317)
T ss_pred             HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            3345789999999999999999999996           99999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH-HHHHHHHHHHHH
Q 005378          319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET-RMIQALREELAS  397 (699)
Q Consensus       319 EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek-e~lqSLE~eLks  397 (699)
                      +...++........    ..+.....+.++++++..|+..++..+..+.+++..++..++.+++.++ .+..-++.+++.
T Consensus       603 ~~~~~~~~~e~~~~----~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~  678 (1317)
T KOG0612|consen  603 ENKKLRSELEKERR----QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM  678 (1317)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777666544    3344678888999999999999999999999999988888888888877 446667799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHH
Q 005378          398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ  470 (699)
Q Consensus       398 lQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk-------~ra~eLeqQ~smLe~dl~qLkQeLq  470 (699)
                      ++..++++..+|+.+  ++..+           +..+++++.++.+++       +.+.+++.++++|.+++.+.++.++
T Consensus       679 ~q~~~eq~~~E~~~~--~L~~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~  745 (1317)
T KOG0612|consen  679 LQNELEQENAEHHRL--RLQDK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN  745 (1317)
T ss_pred             HHHHHHHHHHHHHHH--HHhhH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence            999999999999999  22222           556788888888888       4556789999999999999999998


Q ss_pred             HHHHHHHhhccCChhHHHH---HH---HHHHHHHHHHHH--hHHHHHHhhhhHHHHHHHHHHH-----------------
Q 005378          471 DMEARLKRGQKKSPEEANQ---AI---QAWQDEVERARQ--GQRDAENKLSSLEAEVQKMRVE-----------------  525 (699)
Q Consensus       471 d~e~~~~r~qqk~~~~~~q---ei---~~leeEl~r~r~--~~~~le~~l~~lE~elqkLr~e-----------------  525 (699)
                      +.++........+..+..+   ++   ..++.|+....+  .-+.++.++.++..++..++++                 
T Consensus       746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~  825 (1317)
T KOG0612|consen  746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWG  825 (1317)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence            8887777666554444322   11   111222220000  0033344444444444444333                 


Q ss_pred             -HHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          526 -MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  586 (699)
Q Consensus       526 -~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~  586 (699)
                       ++.++.+|+.. -.....|++++.+..+...+|.   +.+..|+-.+..|.+.+.+.+++.
T Consensus       826 ~~k~lq~~leae-~~~~~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~  883 (1317)
T KOG0612|consen  826 QMKELQDQLEAE-QCFSSLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE  883 (1317)
T ss_pred             hhHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence             34555555521 1238899999999999999997   888999999999999877766665

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=99.27  E-value=2.3e-09  Score=121.18  Aligned_cols=156  Identities=14%  Similarity=0.185  Sum_probs=103.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 005378          301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA-------ALSEGNLASLQMNM  373 (699)
Q Consensus       301 elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL-------~r~k~rLeelq~E~  373 (699)
                      .+++++..++.++..||..+..-+.++...++.+.+..+.+.+++.-+...+..+++.+       ..++..+.+.-...
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~  272 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK  272 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            34556677778888999999999999999988878888888888877766555555544       44444444444444


Q ss_pred             HHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          374 ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ  453 (699)
Q Consensus       374 ~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeq  453 (699)
                      +.-+.+..+..+.-+..++.++..|-..+++.+.+|...+.....-...+|.+.-.+...+..+.++|+.. .-++++..
T Consensus       273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~  351 (629)
T KOG0963|consen  273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKK  351 (629)
T ss_pred             hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Confidence            44433444445555777888888888888777777777776666666677777766666666666666554 33333333


Q ss_pred             HHhh
Q 005378          454 KVAM  457 (699)
Q Consensus       454 Q~sm  457 (699)
                      .++.
T Consensus       352 ELsi  355 (629)
T KOG0963|consen  352 ELSI  355 (629)
T ss_pred             HHHH
Confidence            3333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.91  E-value=3.8e-05  Score=93.56  Aligned_cols=7  Identities=14%  Similarity=0.363  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q 005378          666 LFLMYLL  672 (699)
Q Consensus       666 lWVm~vL  672 (699)
                      -++.|+|
T Consensus       614 ~~~~~~l  620 (1164)
T TIGR02169       614 PAFKYVF  620 (1164)
T ss_pred             HHHHHHC
Confidence            3344433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.89  E-value=9.1e-05  Score=90.26  Aligned_cols=11  Identities=27%  Similarity=0.202  Sum_probs=4.4

Q ss_pred             hHhHHhhcchh
Q 005378          642 RATRFLWRYPI  652 (699)
Q Consensus       642 r~g~fLRRyP~  652 (699)
                      .+-.||+.+.+
T Consensus       562 ~~i~~l~~~~~  572 (1164)
T TIGR02169       562 EAIELLKRRKA  572 (1164)
T ss_pred             HHHHHHHhcCC
Confidence            33344444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.88  E-value=5.5e-05  Score=96.26  Aligned_cols=313  Identities=20%  Similarity=0.257  Sum_probs=148.6

Q ss_pred             cchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhH
Q 005378          267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNS  343 (699)
Q Consensus       267 l~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es---~~~eaLaak~s  343 (699)
                      |...-.++......|-+.-..+..+...++..+..+......++.....++..|..+|.......+   ++....+....
T Consensus      1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333344444444555555555555555555444433221112222233334444444443333332   23445555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 005378          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-------TETRMIQALREELASVERRAEEERAA-------H  409 (699)
Q Consensus       344 Ei~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~-------~Eke~lqSLE~eLkslQ~aLe~E~~a-------H  409 (699)
                      ++..+..++..++..+...-...+.+..+++.++..+..       ++.. +..++.+...++..++.+...       |
T Consensus      1274 E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~-l~~l~~e~~~l~e~leee~e~~~~l~r~l 1352 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENA-LRQLEHELDLLREQLEEEQEAKNELERKL 1352 (1930)
T ss_pred             hHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666555555555544444444444444444433       3333 445555555555555554332       3


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChh
Q 005378          410 NATKMAAMEREVELEHRAAE----ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE  485 (699)
Q Consensus       410 k~Tk~ea~~Re~~LEeenae----lseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~  485 (699)
                      +...+++..=-.+++.....    +.++-..++..+++-...+..+...+..|+-....|++++.++....++.......
T Consensus      1353 sk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~ 1432 (1930)
T KOG0161|consen 1353 SKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAA 1432 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333333333333433332    23333333333444444455555555556666677777777776666555432222


Q ss_pred             HH------HHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 005378          486 EA------NQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ  559 (699)
Q Consensus       486 ~~------~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ  559 (699)
                      +-      ...++.|+.....+-.....++.....++.++.++...+.++..++++. ......|...+..|+..+.+..
T Consensus      1433 le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l-~renk~l~~ei~dl~~~~~e~~ 1511 (1930)
T KOG0161|consen 1433 LEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEEL-RRENKNLSQEIEDLEEQKDEGG 1511 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            11      1122444444444434444445556677777777777766666555532 1224444444455554444444


Q ss_pred             HHH-------HHHHHHHHHHHHHHHHHHH
Q 005378          560 TQL-------ETMASEKAAAEFQLEKEMN  581 (699)
Q Consensus       560 ~ql-------E~L~~Er~sL~~qLE~~~~  581 (699)
                      ..+       ..+..+++.|+.+|+-+..
T Consensus      1512 k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444       4444444444444444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.86  E-value=6.1e-05  Score=91.38  Aligned_cols=58  Identities=14%  Similarity=0.247  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          518 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL  576 (699)
Q Consensus       518 elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qL  576 (699)
                      ++..|+.++..+...++.|-.. ......|+..|..++..-...++.|...+..+....
T Consensus       966 ~~~~l~~~i~~lg~aiee~~~~-~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~ 1023 (1179)
T TIGR02168       966 DEEEARRRLKRLENKIKELGPV-NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023 (1179)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666555555211 111123555555555554444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.82  E-value=0.0001  Score=93.95  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=24.0

Q ss_pred             hhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE  304 (699)
Q Consensus       264 ~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe  304 (699)
                      ..+...+-..|..--..+++.+..|.++...+|+.++++.+
T Consensus       959 k~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~  999 (1930)
T KOG0161|consen  959 KNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQD  999 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444555677777777777777777765544

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=98.79  E-value=8.5e-08  Score=99.94  Aligned_cols=49  Identities=20%  Similarity=0.380  Sum_probs=45.3

Q ss_pred             HHHHhHHhhhhHhHhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005378          630 QKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ  678 (699)
Q Consensus       630 k~A~~~lDs~slr~g~fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~~  678 (699)
                      ..-++.+|++.+.+|+|+-.++.+|.|||||+|+||+|||++|+.+...
T Consensus       195 ~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~  243 (248)
T PF08172_consen  195 YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHS  243 (248)
T ss_pred             HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6668899999999999999999999999999999999999999986553

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK02224 chromosome segregation protein; Provisional

Probab=98.77  E-value=0.00058  Score=82.08  Aligned_cols=16  Identities=6%  Similarity=0.090  Sum_probs=6.8

Q ss_pred             hHHHHHHHHHHHHHHH
Q 005378          514 SLEAEVQKMRVEMAAM  529 (699)
Q Consensus       514 ~lE~elqkLr~e~~~l  529 (699)
                      .+..++..++.++..+
T Consensus       624 ~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        624 ERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.74  E-value=0.00071  Score=81.34  Aligned_cols=17  Identities=12%  Similarity=0.319  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005378          562 LETMASEKAAAEFQLEK  578 (699)
Q Consensus       562 lE~L~~Er~sL~~qLE~  578 (699)
                      ++.+..++..+.-++..
T Consensus       669 l~~~~~~~~~l~~~i~~  685 (880)
T PRK02224        669 LDELREERDDLQAEIGA  685 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.74  E-value=0.00086  Score=76.81  Aligned_cols=75  Identities=25%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          508 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  586 (699)
Q Consensus       508 le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~  586 (699)
                      ++..+..-..+.++|+.++...++.    ..+--.+....|.+|.-.|--=|..-|.|..|+.-|..-.++++.|++..
T Consensus       383 ~e~~lqEer~E~qkL~~ql~ke~D~----n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  383 LEEHLQEERMERQKLEKQLGKEKDC----NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334445556677777777654432    11223444555555555555555556677777777777777777777665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.66  E-value=0.00044  Score=83.92  Aligned_cols=141  Identities=18%  Similarity=0.157  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378          283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS  362 (699)
Q Consensus       283 K~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~  362 (699)
                      ++.+-++.+..-.++.+.++.++.+.|.+.+.+++.+|+..+.......+.    +....+....|......+..+.+..
T Consensus       487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~  562 (1317)
T KOG0612|consen  487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDA  562 (1317)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            455556677777777777788888888888888888888887666665432    2223334444443333333332222


Q ss_pred             H----------HHHHHHHHHHHHHhHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          363 E----------GNLASLQMNMESIMRNRELTET--RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA  427 (699)
Q Consensus       363 k----------~rLeelq~E~~~L~e~~s~~Ek--e~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeen  427 (699)
                      .          ..+.....+.+.+.+.+..++.  ..+......+......+.+....|.....++-.+...+++.+
T Consensus       563 ~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~  639 (1317)
T KOG0612|consen  563 GKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETL  639 (1317)
T ss_pred             hhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            1          2222222222233333333322  223333344555555555556666666666666666666666

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.60  E-value=0.0014  Score=81.69  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          547 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  585 (699)
Q Consensus       547 rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~  585 (699)
                      .+.++.+.+..-..+.+.|...+..|.-.++.+....++
T Consensus       971 e~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196         971 EYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666677777777777776666665544433

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=98.56  E-value=4.5e-05  Score=87.03  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=125.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAM  417 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~---~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~  417 (699)
                      ...+++.+..+|..+++++...+..+..++.++.++......   +..+...+|+..|..++.++..+...+..+...|+
T Consensus       107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl  186 (511)
T PF09787_consen  107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL  186 (511)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            455778999999999999999999999998888877776665   24444689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 005378          418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK  481 (699)
Q Consensus       418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qq  481 (699)
                      .|..+++.....|.+... +.+.+.....+..++.+++.++.......++++.+|+.++.++.+
T Consensus       187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq  249 (511)
T PF09787_consen  187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQ  249 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999 667899999999999999999999999999999999999888874

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.56  E-value=0.0016  Score=77.67  Aligned_cols=72  Identities=19%  Similarity=0.355  Sum_probs=52.0

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          508 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  587 (699)
Q Consensus       508 le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~  587 (699)
                      +...|.....++..+...+..+-.+        ..++..+|.-|.+.|-.|+...+.|.++..+|.++|+...+.+....
T Consensus       292 ~~~eL~rk~~E~~~~qt~l~~~~~~--------~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~  363 (775)
T PF10174_consen  292 LKLELSRKKSELEALQTRLETLEEQ--------DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ  363 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666665543322        45678889999999999999999999999999999988877665543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.54  E-value=0.0053  Score=72.94  Aligned_cols=33  Identities=12%  Similarity=0.057  Sum_probs=17.2

Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005378          646 FLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ  678 (699)
Q Consensus       646 fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~~  678 (699)
                      +++.|..-++.|.+-++-|--.+=..|+.|-|.
T Consensus       654 vt~ghageqyaf~arllyll~slqaaL~q~e~a  686 (1243)
T KOG0971|consen  654 VTRGHAGEQYAFAARLLYLLSSLQAALHQYEHA  686 (1243)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455566666666555443333344555555554

>TIGR00606 rad50 rad50

Probab=98.53  E-value=0.0021  Score=81.04  Aligned_cols=64  Identities=20%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL  576 (699)
Q Consensus       510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qL  576 (699)
                      .++..++.+|..|..++..+..  .. +......+..++..|+-.-...+.++..|..+...|..+|
T Consensus      1028 ~~l~el~~eI~~l~~~~~~~~~--~~-~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606      1028 NELKEVEEELKQHLKEMGQMQV--LQ-MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhhccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555443321  01 1223344455555555555555555555566666665555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.52  E-value=0.0044  Score=77.35  Aligned_cols=38  Identities=26%  Similarity=0.317  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          544 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  581 (699)
Q Consensus       544 le~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  581 (699)
                      +..++..+...+...+..+..+..+...+..++..+.+
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  495 (1163)
T COG1196         458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA  495 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444555555555555555554444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.51  E-value=8.9e-05  Score=76.70  Aligned_cols=212  Identities=19%  Similarity=0.299  Sum_probs=117.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE  420 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re  420 (699)
                      ...++.....++..+...+.....++..+..+...|..++..++.. +...+.+|..+..+|..                
T Consensus         6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~-le~~eerL~~~~~kL~~----------------   68 (237)
T PF00261_consen    6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEE-LERAEERLEEATEKLEE----------------   68 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHCCCCHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH----------------
Confidence            3444445555555555555555555555555555555555555444 44444444444444432                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 005378          421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVER  500 (699)
Q Consensus       421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r  500 (699)
                        ++....+...++..++......-.++..|+.++..+...+...-.++.+...+               +..++.++.+
T Consensus        69 --~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rk---------------l~~~E~~Le~  131 (237)
T PF00261_consen   69 --AEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERK---------------LKVLEQELER  131 (237)
T ss_dssp             --HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHH---------------HHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence              11122222223333333333333333344433333333333333333222211               1223333444


Q ss_pred             HHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          501 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  580 (699)
Q Consensus       501 ~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~  580 (699)
                      ...-...++.++..++.++..+...++.+.-+.+.+ ......|+.+|+.|++.|.+=-..++........|..++..+.
T Consensus       132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~-~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le  210 (237)
T PF00261_consen  132 AEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA-SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE  210 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444566777788888888888887777555554 3567899999999999999998888888888888888888887


Q ss_pred             HHHHHHH
Q 005378          581 NRLQEVQ  587 (699)
Q Consensus       581 ~~a~~~~  587 (699)
                      ..+....
T Consensus       211 ~eL~~~k  217 (237)
T PF00261_consen  211 DELEKEK  217 (237)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.43  E-value=0.002  Score=68.50  Aligned_cols=86  Identities=16%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMASE  568 (699)
Q Consensus       492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qle---q~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~E  568 (699)
                      ...+.|+..++.....+..+|..+...+..|...+..++..+.   .-+...-..++..+..|+..+.......+.|..-
T Consensus       212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~  291 (312)
T PF00038_consen  212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDV  291 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555444555555555555555555555443222   1122335667777777777777777777777776


Q ss_pred             HHHHHHHHH
Q 005378          569 KAAAEFQLE  577 (699)
Q Consensus       569 r~sL~~qLE  577 (699)
                      |-+|...+.
T Consensus       292 K~~Ld~EIa  300 (312)
T PF00038_consen  292 KLALDAEIA  300 (312)
T ss_dssp             HHHHHHHHH
T ss_pred             HHhHHHHHH
Confidence            666555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.41  E-value=0.0043  Score=71.25  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=17.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (699)
Q Consensus       278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~  322 (699)
                      +..|+....++......+......+......+..++.+|+.++..
T Consensus       187 ~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~  231 (546)
T PF07888_consen  187 MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT  231 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444333333333333333333333344444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.40  E-value=0.0014  Score=75.03  Aligned_cols=265  Identities=19%  Similarity=0.265  Sum_probs=146.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          303 RELSRSYEARIKQLEQELSVYKSEVTKV-----------ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (699)
Q Consensus       303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~-----------es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~  371 (699)
                      =++++.|+++-..|+.++..++......           -...+..+..-...++.++..|..|..+++..+.++.+.+.
T Consensus        55 IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k  134 (546)
T KOG0977|consen   55 IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK  134 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555443332           11222333333445556666677777777777777777766


Q ss_pred             HHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL  451 (699)
Q Consensus       372 E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eL  451 (699)
                      .......++...... +..++.++..++.+...           +..-+..|-.++.-+-..|..+...++.|...-.++
T Consensus       135 ~~~~~re~~~~~~~~-l~~leAe~~~~krr~~~-----------le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~  202 (546)
T KOG0977|consen  135 ERRGAREKLDDYLSR-LSELEAEINTLKRRIKA-----------LEDELKRLKAENSRLREELARARKQLDDETLLRVDL  202 (546)
T ss_pred             HHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666555555 55566555555544432           112233445556666777778888888888777777


Q ss_pred             HHHHhhhHHHHHHHH----HHHHHHHHHHHhhc-cCChhH-------HHHHH-HHHHHHHHHHHHhHHHH-HHhhhhHH-
Q 005378          452 EQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPEE-------ANQAI-QAWQDEVERARQGQRDA-ENKLSSLE-  516 (699)
Q Consensus       452 eqQ~smLe~dl~qLk----QeLqd~e~~~~r~q-qk~~~~-------~~qei-~~leeEl~r~r~~~~~l-e~~l~~lE-  516 (699)
                      +.++.+|..++.-++    ++|.+....+.+.. .....-       +-++| ++++.-+.+.|...+.. ..+|.... 
T Consensus       203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~  282 (546)
T KOG0977|consen  203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT  282 (546)
T ss_pred             HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            777777777776665    66666666555554 111111       11111 23333333333322211 13333333 


Q ss_pred             -------------HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 005378          517 -------------AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL-----------LYYKQTQLETMASEKAAA  572 (699)
Q Consensus       517 -------------~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~-----------L~eKQ~qlE~L~~Er~sL  572 (699)
                                   +++..++..+..|+-++..+. ..+..|+++|..|..+           |..|...+..|..|+..|
T Consensus       283 ~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l  361 (546)
T KOG0977|consen  283 SAERANVEQNYAREELRRIRSRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL  361 (546)
T ss_pred             hhccccchhHHHHHHHHHHHhcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence                         555555555555554443321 2355666666666655           455667777777777777


Q ss_pred             HHHHHHHH
Q 005378          573 EFQLEKEM  580 (699)
Q Consensus       573 ~~qLE~~~  580 (699)
                      ..+|+.+.
T Consensus       362 ~~Elq~Ll  369 (546)
T KOG0977|consen  362 SVELQKLL  369 (546)
T ss_pred             HHHHHHhh
Confidence            77777764

>PRK03918 chromosome segregation protein; Provisional

Probab=98.39  E-value=0.014  Score=70.11  Aligned_cols=28  Identities=14%  Similarity=0.510  Sum_probs=13.2

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005378          450 ELEQKVAMLEVECATLQQELQDMEARLK  477 (699)
Q Consensus       450 eLeqQ~smLe~dl~qLkQeLqd~e~~~~  477 (699)
                      .+..++..+.....+++..+..++....
T Consensus       402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~  429 (880)
T PRK03918        402 EIEEEISKITARIGELKKEIKELKKAIE  429 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555544444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.39  E-value=0.001  Score=76.31  Aligned_cols=320  Identities=18%  Similarity=0.196  Sum_probs=196.9

Q ss_pred             hHHHhhhhcCCCCch---hhhhHHHHHHHHHhhhhc---------cchH---HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005378          234 KRKQQALKADDPPTK---EQDQLDEAQGLLKTTIST---------GQSK---EARLARVCAGLSSRLQEYKSENAQLEEL  298 (699)
Q Consensus       234 ~~~~~~~k~~~k~~~---lqkQLeE~n~~LrsE~et---------l~~k---e~qLa~~~aRLrK~~~ELkke~aqLEe~  298 (699)
                      +.|+.=.-.||+..-   =.++||.-|..|..++..         .+-|   ++.|    +.+++.+.+-.+..+.+|..
T Consensus        39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El----~~ar~~l~e~~~~ra~~e~e  114 (546)
T KOG0977|consen   39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAEL----ATARKLLDETARERAKLEIE  114 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhH----HHHHHHHHHHHHHHHHHHHH
Confidence            344444445554322   234677777777766432         2222   3443    34566677777788888888


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378          299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (699)
Q Consensus       299 l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e  378 (699)
                      +.-+++-...|..++...++.+...+.....    +..+++..++++.-+..++..++.++.+++.....+..++.++..
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~----~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKERRGAREKLDD----YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            8888887788888777777777665554443    445778889999999999999999999999999999988888876


Q ss_pred             hhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          379 NREL-------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL  451 (699)
Q Consensus       379 ~~s~-------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eL  451 (699)
                      .+..       .+.+ +++|.++|.-+++..+.|..+-..-...-.. -..-+.=..+|..||.++.-.++...      
T Consensus       191 ~ld~Etllr~d~~n~-~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t-~~~r~~F~~eL~~Ai~eiRaqye~~~------  262 (546)
T KOG0977|consen  191 QLDDETLLRVDLQNR-VQTLLEELAFLKRIHKQEIEEERRKARRDTT-ADNREYFKNELALAIREIRAQYEAIS------  262 (546)
T ss_pred             HHHHHHHHHHHHHhH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccc-ccchHHHHHHHHHHHHHHHHHHHHHH------
Confidence            6544       4666 7778888888877776665442222110000 00001112333444433332222211      


Q ss_pred             HHHHhhhHHHHHHHHHHHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005378          452 EQKVAMLEVECATLQQELQ-DMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK  530 (699)
Q Consensus       452 eqQ~smLe~dl~qLkQeLq-d~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq  530 (699)
                                 ..-+.+++ -|+.++..+.. .....+.......+|+.+.+.....+-.+|+.+|....-|.+++..|+
T Consensus       263 -----------~~nR~diE~~Y~~kI~~i~~-~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~  330 (546)
T KOG0977|consen  263 -----------RQNRKDIESWYKRKIQEIRT-SAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLE  330 (546)
T ss_pred             -----------HHhHHHHHHHHHHHHHHHHh-hhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHH
Confidence                       11122221 13444444431 111222233556777777776666666677766666666666666666


Q ss_pred             Hhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          531 RDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  581 (699)
Q Consensus       531 ~qle---q~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  581 (699)
                      .++.   ..|...-.+.+..+..|.++|-.---.++.|..=+.+|...+..-..
T Consensus       331 ~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  331 YQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence            5554   23555567888999999999999889999999988888877766443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.33  E-value=0.027  Score=70.74  Aligned_cols=28  Identities=25%  Similarity=0.542  Sum_probs=13.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 005378          507 DAENKLSSLEAEVQKMRVEMAAMKRDAE  534 (699)
Q Consensus       507 ~le~~l~~lE~elqkLr~e~~~lq~qle  534 (699)
                      .++..+.....++..++.++..+.+.|.
T Consensus       508 ~a~~~l~~~~~~~~~~~~~~~~l~~~L~  535 (1201)
T PF12128_consen  508 QAEEELRQARRELEELRAQIAELQRQLD  535 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3334444444555555555444444443

>TIGR00606 rad50 rad50

Probab=98.33  E-value=0.01  Score=74.98  Aligned_cols=43  Identities=7%  Similarity=0.123  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          542 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  584 (699)
Q Consensus       542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~  584 (699)
                      ..|..-...|++++..-......+..++..|.-|+..+...++
T Consensus      1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606      1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4555555555555555555666666666666666666655553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.32  E-value=0.00056  Score=70.80  Aligned_cols=216  Identities=20%  Similarity=0.227  Sum_probs=112.8

Q ss_pred             CCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (699)
Q Consensus       245 k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ  324 (699)
                      |+..++.+++++...+..--..|...+.+    ..........|...+..+|..+....+++.....++..++..+....
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~----~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e   77 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKR----AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE   77 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666555554433322222221    22333344555666666666655555566666667777777777766


Q ss_pred             HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378          325 SEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR  401 (699)
Q Consensus       325 ~er~q~es---~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a  401 (699)
                      ..+..++.   ...+.+.....++.........++..+.....+|.-++.++.++..+....+.. +..|+.+|+.+-+.
T Consensus        78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~  156 (237)
T PF00261_consen   78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNN  156 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence            66655544   233445555555555555555556666666666666666666666666666666 66666666666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378          402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL  469 (699)
Q Consensus       402 Le~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL  469 (699)
                      |.    +.......+..|+..++.....|..-+..++......-+++..|+.++..|+.++...+.++
T Consensus       157 lk----~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  157 LK----SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53    22233334444554444444444444444444444333444444444444444443333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.31  E-value=0.015  Score=66.98  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=22.6

Q ss_pred             cccccchhhhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhh
Q 005378          221 LKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT  263 (699)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE  263 (699)
                      -|++=.++|++++-|++   +..++....+.||+-++..|..=
T Consensus         7 Vk~Avs~FG~~~~~k~~---~~~e~~~~~e~eL~~~qeel~~~   46 (522)
T PF05701_consen    7 VKEAVSLFGGSIDWKKH---QSLERVKEKETELEKAQEELAKL   46 (522)
T ss_pred             HHHHHHHcCCccccccC---CchhhhhHHHHHHHHHHHHHHHH
Confidence            45555566666666655   22255556666766666554443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.29  E-value=0.018  Score=67.01  Aligned_cols=13  Identities=54%  Similarity=0.519  Sum_probs=9.6

Q ss_pred             CCCCCcccCCCCC
Q 005378          150 ATPNGEILNENDS  162 (699)
Q Consensus       150 ~~~~g~~~~~~~~  162 (699)
                      ++.-|+|+|+.++
T Consensus       237 ~~~a~~~~n~~~d  249 (961)
T KOG4673|consen  237 TTNAQEILNENLD  249 (961)
T ss_pred             hhhhhhhhccccc
Confidence            6677888887764

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.24  E-value=0.029  Score=67.33  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=42.0

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhhh----c-chhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 005378          510 NKLSSLEAEVQKMRVEMAAMKRDAEH----Y-SREEHMELEKRYRELTDLLYYKQTQLETMA-------SEKAAAEFQLE  577 (699)
Q Consensus       510 ~~l~~lE~elqkLr~e~~~lq~qleq----~-~~~~~~ele~rl~eLte~L~eKQ~qlE~L~-------~Er~sL~~qLE  577 (699)
                      .+|..++-.+.+.+.++..+..++..    + +......|+..+....+....-|..|+.|.       .|++++..++-
T Consensus       514 s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~  593 (775)
T PF10174_consen  514 SEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIG  593 (775)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34444444444444444444433332    1 344566777777777777777776666555       47777766666


Q ss_pred             HHHHHH
Q 005378          578 KEMNRL  583 (699)
Q Consensus       578 ~~~~~a  583 (699)
                      .+...+
T Consensus       594 ~LekeL  599 (775)
T PF10174_consen  594 ELEKEL  599 (775)
T ss_pred             HHHHHH
Confidence            655543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.23  E-value=0.022  Score=72.74  Aligned_cols=293  Identities=17%  Similarity=0.159  Sum_probs=138.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 005378          279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ  358 (699)
Q Consensus       279 aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Leqe  358 (699)
                      ++.++...+..+.....+..+..+.+....+..++..|+.+....+.-+...+.     ......++..+...+..+...
T Consensus       289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-----~lr~q~ei~~l~~~LeELee~  363 (1486)
T PRK04863        289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-----ALRQQEKIERYQADLEELEER  363 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555566666666666666555544333322     011234444445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 005378          359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA----------A  428 (699)
Q Consensus       359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeen----------a  428 (699)
                      +......++.+..+...+...+...+.+ +..++..+..+++.+..-...-..-+.    ....++..+          .
T Consensus       364 Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLaelqqel~elQ~el~q~qq----~i~~Le~~~~~~~~~~~SdE  438 (1486)
T PRK04863        364 LEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADYQQALDVQQTRAIQYQQ----AVQALERAKQLCGLPDLTAD  438 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCCCCHH
Confidence            5555555555555555555555444444 444444444444444332222111111    222222222          3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhH-HHHHHHHHHHHHHHHHHh---
Q 005378          429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE-ANQAIQAWQDEVERARQG---  504 (699)
Q Consensus       429 elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~-~~qei~~leeEl~r~r~~---  504 (699)
                      +|...+...+.++.+....+.++++++.+++..+.++++.+..+.    .+..++.-. +-.....+-......+..   
T Consensus       439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~----~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~  514 (1486)
T PRK04863        439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR----KIAGEVSRSEAWDVARELLRRLREQRHLAEQ  514 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            355566666777777777777888887777777777776664443    233333222 211111111111111110   


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhh----hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          505 QRDAENKLSSLEAEVQKMRVEMAAMKRDA----EHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  580 (699)
Q Consensus       505 ~~~le~~l~~lE~elqkLr~e~~~lq~ql----eq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~  580 (699)
                      ..-+..++..++..++.-+..-. +-.++    ...+ .+...|+.=..++...+..-....+.+...+..++.+++.+.
T Consensus       515 ~~~~~~~~~~l~~~~~~q~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~  592 (1486)
T PRK04863        515 LQQLRMRLSELEQRLRQQQRAER-LLAEFCKRLGKNL-DDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ  592 (1486)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01112333333332222222111 11111    1111 123344433444444444445666667777788888888877


Q ss_pred             HHHHHHH
Q 005378          581 NRLQEVQ  587 (699)
Q Consensus       581 ~~a~~~~  587 (699)
                      .++....
T Consensus       593 ~~i~~l~  599 (1486)
T PRK04863        593 ARIQRLA  599 (1486)
T ss_pred             HHHHHHH
Confidence            7765543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.22  E-value=0.029  Score=66.25  Aligned_cols=187  Identities=19%  Similarity=0.236  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Q 005378          388 IQALREELASVERRAEEERAAHNATKMAAMERE----VELEHRAAEASMALARIQRIADERT-------AKAGELEQKVA  456 (699)
Q Consensus       388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re----~~LEeenaelseALa~lQrkL~EEk-------~ra~eLeqQ~s  456 (699)
                      +.-+++..+.++.-|+-    -++|+.+++.+.    .-++.+|-.+..-.+.++.-|-|.+       .+..+|+++..
T Consensus       286 lSqkeelVk~~qeeLd~----lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd  361 (1265)
T KOG0976|consen  286 LSQKEELVKELQEELDT----LKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD  361 (1265)
T ss_pred             hhHHHHHHHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence            55555556666555543    344444444441    1234455445555555555555555       56679999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHH---HhhhhHHHHHHHHHHHHHHHHHhh
Q 005378          457 MLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAE---NKLSSLEAEVQKMRVEMAAMKRDA  533 (699)
Q Consensus       457 mLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le---~~l~~lE~elqkLr~e~~~lq~ql  533 (699)
                      |+..+..++++.+..-+..+.+...- .+...+++..++..+-++...+++-+   ++|....+.+..|......+--|+
T Consensus       362 ~al~dvr~i~e~k~nve~elqsL~~l-~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~  440 (1265)
T KOG0976|consen  362 MALMDVRSIQEKKENVEEELQSLLEL-QAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL  440 (1265)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999887766666555421 11222234444444444433322222   334444444444444422222222


Q ss_pred             hhcc-------------hhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 005378          534 EHYS-------------REEHMELEKRYRELTDLLYYKQ---TQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       534 eq~~-------------~~~~~ele~rl~eLte~L~eKQ---~qlE~L~~Er~sL~~qLE~~  579 (699)
                      ++..             -..++++=.+|+.|.+.|.-+-   .+++.|..|..--..+++-+
T Consensus       441 s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefm  502 (1265)
T KOG0976|consen  441 SNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFM  502 (1265)
T ss_pred             hhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            2100             0135667778888888776443   45566655544444444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.21  E-value=0.049  Score=68.56  Aligned_cols=40  Identities=28%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  580 (699)
Q Consensus       541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~  580 (699)
                      ...++.++..+...+......+..+..+......+|+...
T Consensus       818 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~  857 (1201)
T PF12128_consen  818 KPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEEL  857 (1201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555444444444444444444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.20  E-value=0.032  Score=71.31  Aligned_cols=164  Identities=21%  Similarity=0.259  Sum_probs=116.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Q 005378          305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE  384 (699)
Q Consensus       305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~E  384 (699)
                      ..+.++.++..|+.+|..++..+....+++++-....+.++...+..++.+...+......+..++.+...+...+++++
T Consensus       799 ~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~  878 (1822)
T KOG4674|consen  799 TKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELE  878 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466678999999999999999998888888888899999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 005378          385 TRMIQALREELASVE------------RRAEEERAAHNATKMAAMERE--------------VELEHRAAEASMALARIQ  438 (699)
Q Consensus       385 ke~lqSLE~eLkslQ------------~aLe~E~~aHk~Tk~ea~~Re--------------~~LEeenaelseALa~lQ  438 (699)
                      ++ +.+...+...+.            ..|..+...|..++..+-.++              ..++..+..+.+....++
T Consensus       879 k~-l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~e  957 (1822)
T KOG4674|consen  879 KR-LKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELE  957 (1822)
T ss_pred             HH-HHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            88 555554433333            345555555544444444443              333444445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378          439 RIADERTAKAGELEQKVAMLEVECATLQQEL  469 (699)
Q Consensus       439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL  469 (699)
                      .++.....+...|+..++.|+.++..++.++
T Consensus       958 a~ie~~~~k~tslE~~ls~L~~~~~~l~~e~  988 (1822)
T KOG4674|consen  958 AKIESLHKKITSLEEELSELEKEIENLREEL  988 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555666666666666666665555444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.14  E-value=0.016  Score=68.86  Aligned_cols=224  Identities=17%  Similarity=0.263  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHhhhhccchHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378          252 QLDEAQGLLKTTISTGQSKEARLA-------RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (699)
Q Consensus       252 QLeE~n~~LrsE~etl~~ke~qLa-------~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ  324 (699)
                      .|+.-..+||+|..+.-.-|..|-       -..-.++-.++.++.++.+|+..+..|--....=...+..|++-|..++
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466666777777554333333322       2234455556666666666666555442222222224556666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Q 005378          325 SEVTKVESNLAEALAAKNSEIETLVSSI----DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER  400 (699)
Q Consensus       325 ~er~q~es~~~eaLaak~sEi~eLe~RL----~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~  400 (699)
                      ..+...+..+.+.-.++..+-+....-.    ..-..--+..+.+...++.|.++|..++-..+.+ +..++.++..+..
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr~  580 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQ-IRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            6666665544433222111111000000    0000122345666677777777777777666666 6666666533332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378          401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (699)
Q Consensus       401 aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q  480 (699)
                      --   +..|+.+.+ ++.-+.-|++.++-|...|++--|.-.+=.....+.++|+.+++..+..--+||.+++.++....
T Consensus       581 ~~---~e~~~~~e~-L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  581 YE---KESEKDTEV-LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HH---hhhhhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10   223333322 44556667777777777775544433333355567777777777777666666666666665543

; GO: 0016021 integral to membrane

>PRK03918 chromosome segregation protein; Provisional

Probab=98.12  E-value=0.051  Score=65.45  Aligned_cols=14  Identities=7%  Similarity=0.064  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 005378          544 LEKRYRELTDLLYY  557 (699)
Q Consensus       544 le~rl~eLte~L~e  557 (699)
                      |+.++.+|..++..
T Consensus       457 ~~~ei~~l~~~~~~  470 (880)
T PRK03918        457 YTAELKRIEKELKE  470 (880)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.09  E-value=0.062  Score=65.97  Aligned_cols=162  Identities=15%  Similarity=0.214  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378          388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ  467 (699)
Q Consensus       388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ  467 (699)
                      ++..+.++..|+..++.+...-..-+..+-.+-.-+-++.-.+.+.|.-.-.++.+-+.+++..+.++.+|..-..+...
T Consensus       442 i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~  521 (1293)
T KOG0996|consen  442 IQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLK  521 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555544433322222222222222222222233333333344444445555555555555555555555


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHH
Q 005378          468 ELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR  547 (699)
Q Consensus       468 eLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~r  547 (699)
                      ++..++..+...... ...-...+..|+.++.       ...+++...+.++.++++++..++               .+
T Consensus       522 ~~e~lk~~L~~~~~~-~~e~~~~l~~~k~~l~-------~~k~e~~~~~k~l~~~~~e~~~~~---------------~~  578 (1293)
T KOG0996|consen  522 KVEELKGKLLASSES-LKEKKTELDDLKEELP-------SLKQELKEKEKELPKLRKEERNLK---------------SQ  578 (1293)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh-------hHHHHHHHHHHhHHHHHHHHHHHH---------------HH
Confidence            555555554443311 1111111233333333       223344456666666666554433               35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          548 YRELTDLLYYKQTQLETMASEKAAA  572 (699)
Q Consensus       548 l~eLte~L~eKQ~qlE~L~~Er~sL  572 (699)
                      ++.+.+.+++--..+..-.+....|
T Consensus       579 ~~~~rqrveE~ks~~~~~~s~~kVl  603 (1293)
T KOG0996|consen  579 LNKLRQRVEEAKSSLSSSRSRNKVL  603 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            5555555555544444444444333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.09  E-value=0.061  Score=65.06  Aligned_cols=239  Identities=20%  Similarity=0.200  Sum_probs=129.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----------------hHHHHHHHHHHHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----------------TETRMIQALREELASVERRAEE  404 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~----------------~Eke~lqSLE~eLkslQ~aLe~  404 (699)
                      ..++|=.++..+.-+..+....+.+.+++..|+..|+-.-..                .++.-++...+.|.+ -++|..
T Consensus       299 leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkl  377 (1195)
T KOG4643|consen  299 LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKL  377 (1195)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHH
Confidence            445566666666666666666666677777766665543322                122323333444554 448888


Q ss_pred             HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005378          405 ERAAHNATKMAAME----------REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA  474 (699)
Q Consensus       405 E~~aHk~Tk~ea~~----------Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~  474 (699)
                      +...|.-|..=-..          ...+|+.++..|+.-...++.++.+......+|+.-.++|.++.+.|.++......
T Consensus       378 lLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~  457 (1195)
T KOG4643|consen  378 LLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR  457 (1195)
T ss_pred             HHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877542222          24455666677888888888888888888888888888888888888887765544


Q ss_pred             HHHhhccCChhHHHH---HHHHHHHHHHHHHHhHHHHH-------HhhhhHHHHHHHHHHHHHHHHHhhh----------
Q 005378          475 RLKRGQKKSPEEANQ---AIQAWQDEVERARQGQRDAE-------NKLSSLEAEVQKMRVEMAAMKRDAE----------  534 (699)
Q Consensus       475 ~~~r~qqk~~~~~~q---ei~~leeEl~r~r~~~~~le-------~~l~~lE~elqkLr~e~~~lq~qle----------  534 (699)
                      -..+.... .+...+   -..|+.++.+.++...+.+-       ..++.+.....+++.+......+++          
T Consensus       458 s~~rq~~e-~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe  536 (1195)
T KOG4643|consen  458 SLSRQSLE-NEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELE  536 (1195)
T ss_pred             hHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443211 111111   11333333333332222222       2223333333333333322222211          


Q ss_pred             ----hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          535 ----HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       535 ----q~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a  583 (699)
                          +|- .....|-+||+.|... -+|+..+|.-..+..-.-..+.....++
T Consensus       537 ~~l~~lE-~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL  587 (1195)
T KOG4643|consen  537 ELLGNLE-EENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDAL  587 (1195)
T ss_pred             HHHhhHH-HHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                121 1234444577777666 6677776666665555555555444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.99  E-value=0.14  Score=65.75  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=18.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE  381 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s  381 (699)
                      ...++..++.++..++.++...+..+.+++..+..++....
T Consensus       374 leeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~  414 (1486)
T PRK04863        374 ADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAI  414 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444433

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.99  E-value=0.078  Score=62.86  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=17.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378          450 ELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (699)
Q Consensus       450 eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q  480 (699)
                      -|...++-.++-.+.++.+|+.+++-..+..
T Consensus       281 ~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~  311 (1265)
T KOG0976|consen  281 VLGDELSQKEELVKELQEELDTLKQTRTRAD  311 (1265)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444455555666666666655555444

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.96  E-value=0.16  Score=65.39  Aligned_cols=274  Identities=21%  Similarity=0.280  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378          308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS----IDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (699)
Q Consensus       308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~R----L~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~  383 (699)
                      .++-++..|.++.+-++..-.    .+...|......+..+..+    +..+...|...+..+..+++.+..|......+
T Consensus       175 s~q~k~~rl~QEksll~s~~~----wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eL  250 (1822)
T KOG4674|consen  175 SSQLKEERLEQEKSLLESENK----WLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEEL  250 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444433333    3445566777777788777    88888889999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          384 ETRMIQALREELASVERRAE-------EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA  456 (699)
Q Consensus       384 Eke~lqSLE~eLkslQ~aLe-------~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s  456 (699)
                      .+. +.++-..|+.+..+.+       .|...|...=.-+..-+.+++...++|..++..+++-|.+-.-+..+...++.
T Consensus       251 s~~-ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~  329 (1822)
T KOG4674|consen  251 SKK-IESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLK  329 (1822)
T ss_pred             HHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            888 7777766555554443       45555555555555566777888888899999888888888877777766666


Q ss_pred             hhHHHHHHHHHHH----HHHHHHHHhhccCChh-------H-----HHH-------------HHHHHHHHHHHHHHhHHH
Q 005378          457 MLEVECATLQQEL----QDMEARLKRGQKKSPE-------E-----ANQ-------------AIQAWQDEVERARQGQRD  507 (699)
Q Consensus       457 mLe~dl~qLkQeL----qd~e~~~~r~qqk~~~-------~-----~~q-------------ei~~leeEl~r~r~~~~~  507 (699)
                      .++..+..+..++    ..+++.+...-....+       .     +..             ....++.++....-..+.
T Consensus       330 e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~  409 (1822)
T KOG4674|consen  330 ELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELER  409 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555554444    2333222222111000       1     000             002223333332222222


Q ss_pred             HHHhhhhHHHHHHHHHHHHHH--------------HHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          508 AENKLSSLEAEVQKMRVEMAA--------------MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  573 (699)
Q Consensus       508 le~~l~~lE~elqkLr~e~~~--------------lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~  573 (699)
                      +...|.++-+++...--.++.              +-+.+. ...+....++..+..|+-.+-...+++-.|......|.
T Consensus       410 ~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~-~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdls  488 (1822)
T KOG4674|consen  410 LQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELD-FSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLS  488 (1822)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333322222222111              111111 12335566777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHH
Q 005378          574 FQLEKEMNRLQEVQ  587 (699)
Q Consensus       574 ~qLE~~~~~a~~~~  587 (699)
                      -|+--+...++..+
T Consensus       489 rqv~~Ll~el~e~~  502 (1822)
T KOG4674|consen  489 RQVNVLLLELDELR  502 (1822)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77766666666665

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.064  Score=63.40  Aligned_cols=139  Identities=15%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH----------H
Q 005378          423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI----------Q  492 (699)
Q Consensus       423 LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei----------~  492 (699)
                      |....++|+.-|...+-.+.-.+..++.+..++..+-.+..+|+++|++++.++-+.......+..+ +          .
T Consensus       449 Ln~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q-lkq~q~a~~~~~  527 (1118)
T KOG1029|consen  449 LNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ-LKQKQSAHKETT  527 (1118)
T ss_pred             HHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhhhhccCcc
Confidence            3333344444444444444444455555555555555555555555555554444332111111000 1          1


Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 005378          493 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-EKAA  571 (699)
Q Consensus       493 ~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~-Er~s  571 (699)
                      +-..++++++..++.+..   .+++++..|.++...-.        .....+.+|+.+|++.+..+|.+.+.+.. ++.-
T Consensus       528 ~~~s~L~aa~~~ke~irq---~ikdqldelskE~esk~--------~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~  596 (1118)
T KOG1029|consen  528 QRKSELEAARRKKELIRQ---AIKDQLDELSKETESKL--------NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDK  596 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112334444333322222   23333444444432211        11345788999999999999988888876 6655


Q ss_pred             HH
Q 005378          572 AE  573 (699)
Q Consensus       572 L~  573 (699)
                      +.
T Consensus       597 ~k  598 (1118)
T KOG1029|consen  597 LK  598 (1118)
T ss_pred             HH
Confidence            54

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.93  E-value=0.089  Score=61.55  Aligned_cols=45  Identities=16%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378          435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (699)
Q Consensus       435 a~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~  479 (699)
                      ..++..+..+++++.++++++..+..++++++.++..++...++.
T Consensus       714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~  758 (961)
T KOG4673|consen  714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL  758 (961)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888999999999999999999988888888876665555443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.93  E-value=0.01  Score=70.46  Aligned_cols=94  Identities=23%  Similarity=0.327  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH
Q 005378          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI  388 (699)
Q Consensus       309 Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~l  388 (699)
                      |+.++..|..+|..    ..+.+.+++.++....+.-..++..|+.+.++.+.+..++..+...+++=++.+..+|++ +
T Consensus       423 LE~dvkkLraeLq~----~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr-L  497 (697)
T PF09726_consen  423 LEADVKKLRAELQS----SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR-L  497 (697)
T ss_pred             HHHHHHHHHHHHHh----hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            34444444444432    233444566666666665556666777777777777766666666666655555555665 3


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005378          389 QALREELASVERRAEEERA  407 (699)
Q Consensus       389 qSLE~eLkslQ~aLe~E~~  407 (699)
                      ...+..-..++..|..|+.
T Consensus       498 ~eE~~~R~~lEkQL~eErk  516 (697)
T PF09726_consen  498 AEERRQRASLEKQLQEERK  516 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333444544444433

; GO: 0016021 integral to membrane

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.90  E-value=0.051  Score=57.83  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=12.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHH
Q 005378          509 ENKLSSLEAEVQKMRVEMAAM  529 (699)
Q Consensus       509 e~~l~~lE~elqkLr~e~~~l  529 (699)
                      ...|..++.++..++.+|...
T Consensus       261 ~~~i~~le~el~~l~~~~~~~  281 (312)
T PF00038_consen  261 QAEIAELEEELAELREEMARQ  281 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccchhHHHHHHHHHHH
Confidence            345556667777777666443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.87  E-value=0.088  Score=62.01  Aligned_cols=29  Identities=21%  Similarity=0.174  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          551 LTDLLYYKQTQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       551 Lte~L~eKQ~qlE~L~~Er~sL~~qLE~~  579 (699)
                      ...+|-+.+..|+.+..++.-|..+|-.+
T Consensus       284 ~~~ELq~~qe~Lea~~qqNqqL~~qls~~  312 (617)
T PF15070_consen  284 AHQELQEAQEHLEALSQQNQQLQAQLSLM  312 (617)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence            33455556777888888877777777653

>PRK11637 AmiB activator; Provisional

Probab=97.87  E-value=0.025  Score=63.32  Aligned_cols=85  Identities=24%  Similarity=0.281  Sum_probs=37.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378          281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA  360 (699)
Q Consensus       281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~  360 (699)
                      +++.+.+++.++.+++..+..++.....++.++..++.++...+..+...+.    .+...+.+|..++..|..++.++.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~----~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQN----TLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555544444444444455555555555444444333322    222333333344444444444444


Q ss_pred             HHHHHHHHH
Q 005378          361 LSEGNLASL  369 (699)
Q Consensus       361 r~k~rLeel  369 (699)
                      ..+..+...
T Consensus       121 ~~~~~l~~r  129 (428)
T PRK11637        121 AQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHH
Confidence            433333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.85  E-value=0.11  Score=59.98  Aligned_cols=138  Identities=18%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHH-
Q 005378          431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAE-  509 (699)
Q Consensus       431 seALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le-  509 (699)
                      ...|..+...|.+-+..+.........|.....+|+-+|...+..+.+..++. ......+..|+.++.+.+..+..+. 
T Consensus       280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e-~~a~~~v~~L~~eL~~~r~eLea~~~  358 (522)
T PF05701_consen  280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE-KEASSEVSSLEAELNKTRSELEAAKA  358 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence            33444555555555544444444444444444555555544444444444322 1222235666666665554433222 


Q ss_pred             ------HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          510 ------NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       510 ------~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a  583 (699)
                            ..+..+...|+++..+...               .+.-.....+++..-...++.......++..+|+.+..-+
T Consensus       359 ~e~~~k~~~~~l~~~Lqql~~Eae~---------------Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  359 EEEKAKEAMSELPKALQQLSSEAEE---------------AKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA  423 (522)
T ss_pred             hhcchhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1222333333333333322               2333444444444444555555566666666665555443


Q ss_pred             H
Q 005378          584 Q  584 (699)
Q Consensus       584 ~  584 (699)
                      .
T Consensus       424 e  424 (522)
T PF05701_consen  424 E  424 (522)
T ss_pred             H
Confidence            3

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.75  E-value=0.22  Score=61.15  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          547 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       547 rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a  583 (699)
                      +|+.|.-....++.+|+...++..-|..+++..+.-.
T Consensus      1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            7888888888888999999999888888888876543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=0.27  Score=59.91  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378          283 SRLQEYKSENAQLEELLVAE---RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA  359 (699)
Q Consensus       283 K~~~ELkke~aqLEe~l~el---qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL  359 (699)
                      +.+...+++.+++|+.+..+   ..+++.|.+++.-.+.+|......+.+-+.  .    ..-+.+..+..++..+++++
T Consensus       684 ~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~--~----~~~~~~~~~~e~v~e~~~~I  757 (1174)
T KOG0933|consen  684 KELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF--H----KLLDDLKELLEEVEESEQQI  757 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--h----hHHHHHHHHHHHHHHHHHHH
Confidence            34455566677788777765   447778888888888887776665555332  1    13344556666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          360 ALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERAA  408 (699)
Q Consensus       360 ~r~k~rLeelq~E~~~L~e~~s~----~Eke~lqSLE~eLkslQ~aLe~E~~a  408 (699)
                      ......+-+++.....|-.+..+    .+.+ +..++.+|+.+.++++.....
T Consensus       758 ke~~~~~k~~~~~i~~lE~~~~d~~~~re~r-lkdl~keik~~k~~~e~~~~~  809 (1174)
T KOG0933|consen  758 KEKERALKKCEDKISTLEKKMKDAKANRERR-LKDLEKEIKTAKQRAEESSKE  809 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665555444443    3555 777888888888888765444

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.68  E-value=8.8e-06  Score=97.94  Aligned_cols=128  Identities=23%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE  420 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re  420 (699)
                      +..++.+++..++.-...-..+...+..++.++..|...+.+.... +..++..|..++..+..-+..+.   .++..|.
T Consensus       241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~-k~~l~~qlsk~~~El~~~k~K~e---~e~~~~~  316 (859)
T PF01576_consen  241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEA-KSELERQLSKLNAELEQWKKKYE---EEAEQRT  316 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHhhHHHHHHHHHH---HHhhhhH
Confidence            4445555555555554444555555555555555555555443222 44444444444433332222211   1222244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378          421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM  472 (699)
Q Consensus       421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~  472 (699)
                      ..+|+.+--+..-|..++..+.+....+..|++...-|..++..++-+|+..
T Consensus       317 EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~  368 (859)
T PF01576_consen  317 EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA  368 (859)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555444444555555555555555555555444444444444444333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.66  E-value=0.29  Score=59.54  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA  456 (699)
Q Consensus       389 qSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s  456 (699)
                      ..|..+...++.++.+....    ..+.-.+...+..|+..+-.+....++.+.+...+..++.+.++
T Consensus       411 KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls  474 (1195)
T KOG4643|consen  411 KNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS  474 (1195)
T ss_pred             HhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence            34444444455444443332    44445567777777877777888888777777666555555443

>PRK11637 AmiB activator; Provisional

Probab=97.65  E-value=0.072  Score=59.68  Aligned_cols=31  Identities=23%  Similarity=0.202  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          342 NSEIETLVSSIDALKKQAALSEGNLASLQMN  372 (699)
Q Consensus       342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E  372 (699)
                      +.+|..++.+|..++.++...+..+...+..
T Consensus        95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         95 QNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.62  E-value=0.27  Score=58.01  Aligned_cols=132  Identities=24%  Similarity=0.275  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE  331 (699)
Q Consensus       252 QLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~e  331 (699)
                      ||.+....|..|-++          .+..|+.-.+-|+-.+.++-+.+..+.+.....-.++..|+..|..++.......
T Consensus         1 ql~e~l~qlq~Erd~----------ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~   70 (617)
T PF15070_consen    1 QLMESLKQLQAERDQ----------YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP   70 (617)
T ss_pred             ChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            456666777777665          5667777777777777777777776666555566667777777776665554322


Q ss_pred             HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 005378          332 SNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS  397 (699)
Q Consensus       332 s~~~eaLaak~sEi~-eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLks  397 (699)
                      .   ..-.+.-++-+ .|+..+..|..++..+..++.....++..|..-....+.+ +..++..|..
T Consensus        71 ~---~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEer-L~ELE~~le~  133 (617)
T PF15070_consen   71 P---PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEER-LAELEEELER  133 (617)
T ss_pred             C---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            1   00011122221 4555666666666666666666555666554433333333 3333333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.60  E-value=0.016  Score=56.14  Aligned_cols=139  Identities=20%  Similarity=0.249  Sum_probs=115.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAME  418 (699)
Q Consensus       339 aak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~  418 (699)
                      .++..+......|.+.++..++.+..+......+..+|..+...++.+ +..++..|..++..++.- ..+...-..+..
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~-~~~~~~~E~l~r   80 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEES-EKRKSNAEQLNR   80 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhH-HHHHHhHHHHHh
Confidence            345666777888999999999999999999999999999999999999 999999999999888653 222222235556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (699)
Q Consensus       419 Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~  479 (699)
                      |...||++-......|.....+|.+--.++..+++++..|+.....+-.++..+..++...
T Consensus        81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            6788888888888899999999999999999999999999999999999998888776643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.55  E-value=0.17  Score=57.87  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (699)
Q Consensus       345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~  404 (699)
                      +..++..++.+..++...+..+..++.++..+.....+.+.. +..++..+..++..++.
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~-L~~l~~~~~~~~~~l~~  273 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAA-LNKLNTAAAKIKSKIEQ  273 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444443333 44444444444444433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.52  E-value=0.24  Score=60.87  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005378          436 RIQRIADERTAKAGELEQKVAMLEVEC  462 (699)
Q Consensus       436 ~lQrkL~EEk~ra~eLeqQ~smLe~dl  462 (699)
                      .+++.+.+-+.+++.+++++.-++...
T Consensus       362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  362 EIENSIRKLKKEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555444443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.52  E-value=0.087  Score=57.01  Aligned_cols=205  Identities=17%  Similarity=0.200  Sum_probs=120.3

Q ss_pred             hhHHHHHHHHHhhhhccchH-HHHHHHHHhhhhhHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHH
Q 005378          251 DQLDEAQGLLKTTISTGQSK-EARLARVCAGLSSRLQEYKSENAQLEE--------LLVAERELSRSYEARIKQLEQELS  321 (699)
Q Consensus       251 kQLeE~n~~LrsE~etl~~k-e~qLa~~~aRLrK~~~ELkke~aqLEe--------~l~elqek~~~Lq~kl~qLQ~EL~  321 (699)
                      +-|.+.+..||...-.++++ |..=--....|=|.++.++++...|-.        +...|.-++..|+.....|+..|.
T Consensus        51 ~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le  130 (310)
T PF09755_consen   51 KHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLE  130 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666664444444 222233556667777777777766632        222334455555555555555555


Q ss_pred             HHHHHH-HHHHH----------HHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------
Q 005378          322 VYKSEV-TKVES----------NLAEALAAKNSEIETLVSSID-ALKKQAALSEGNLASLQMNMESIMRNREL-------  382 (699)
Q Consensus       322 ~eQ~er-~q~es----------~~~eaLaak~sEi~eLe~RL~-~LeqeL~r~k~rLeelq~E~~~L~e~~s~-------  382 (699)
                      .+|... ..+..          .+...|..+..+.=+|++-|. .-+--+.++-.+.+++..+++.|+..+..       
T Consensus       131 ~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s  210 (310)
T PF09755_consen  131 QEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPS  210 (310)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Confidence            555332 11111          112222333333334444442 22223677778889999999998888773       


Q ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          383 ----------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTA  446 (699)
Q Consensus       383 ----------------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~  446 (699)
                                      .... +..|+.+...|.+.+..-...|..-...+..-+..+-++|       ..++++|.-+..
T Consensus       211 ~~d~~~~~~~~Dt~e~~~sh-I~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN-------~rLqr~L~~E~e  282 (310)
T PF09755_consen  211 PRDTVNVSEENDTAERLSSH-IRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREEN-------RRLQRKLQREVE  282 (310)
T ss_pred             cchHHhhcccCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence                            1223 4456666667777776666666555555555566666666       578999999999


Q ss_pred             HHHHHHHHHhhhHHHHH
Q 005378          447 KAGELEQKVAMLEVECA  463 (699)
Q Consensus       447 ra~eLeqQ~smLe~dl~  463 (699)
                      ++..|.++++..+..++
T Consensus       283 rreal~R~lsesEsslE  299 (310)
T PF09755_consen  283 RREALCRHLSESESSLE  299 (310)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998777664

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.63  Score=56.89  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=20.9

Q ss_pred             HHHHHHhHHhhhhHhHhHHhhcchhHHHHHHHH
Q 005378          628 QLQKAAKLLDSGAVRATRFLWRYPIARIILLFY  660 (699)
Q Consensus       628 rvk~A~~~lDs~slr~g~fLRRyP~aRl~~l~Y  660 (699)
                      .++..+..||...-..-..=|+.---+++-||-
T Consensus      1012 kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs 1044 (1174)
T KOG0933|consen 1012 KIKKTIEKLDEKKREELNKAWEKVNKDFGSIFS 1044 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            567777788877666666556555555554443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.36  E-value=0.2  Score=57.22  Aligned_cols=9  Identities=33%  Similarity=0.571  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 005378          515 LEAEVQKMR  523 (699)
Q Consensus       515 lE~elqkLr  523 (699)
                      ++.++..+.
T Consensus       384 l~~~l~~~~  392 (562)
T PHA02562        384 LQDELDKIV  392 (562)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.33  E-value=0.83  Score=56.70  Aligned_cols=46  Identities=24%  Similarity=0.301  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          542 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  587 (699)
Q Consensus       542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~  587 (699)
                      ..++.-|..+..++.++-+.++.+..+-..+..+|-.+..++.+..
T Consensus       545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k  590 (1293)
T KOG0996|consen  545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK  590 (1293)
T ss_pred             HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666777777778888888887777777777777666554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.30  E-value=5.5e-05  Score=91.24  Aligned_cols=153  Identities=24%  Similarity=0.352  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHH------HHHHHHHHHHHHHHHHhH
Q 005378          432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA------NQAIQAWQDEVERARQGQ  505 (699)
Q Consensus       432 eALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~------~qei~~leeEl~r~r~~~  505 (699)
                      ++-..++++|.+-...+.++...+..|+-....|..+++|+...+.+.......+-      .+.+..|+..+..+....
T Consensus       321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~  400 (859)
T PF01576_consen  321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAER  400 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555666666666777777777777777777766666553322211      112334444443333333


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  585 (699)
Q Consensus       506 ~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~  585 (699)
                      ..++.....++.++.+|+.++..+..+++..- -....|...|..|++.+..-...+..|...+..|..+++.+...+++
T Consensus       401 d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le-re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE  479 (859)
T PF01576_consen  401 DAAQREARELETELFKLKNELEELQEQLEELE-RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEE  479 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555667777777777666665544321 12455566677777776665544444444444444444444333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.52  Score=54.39  Aligned_cols=86  Identities=14%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR  426 (699)
Q Consensus       347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEee  426 (699)
                      ..-.+|-.|+.+++..+..|..+++++.++...+++.-.. .+.++.+    ..+|.-|...|+--...++.-+.+||++
T Consensus       104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~-~~~~E~q----R~rlr~elKe~KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen  104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES-NAAVEDQ----RRRLRDELKEYKFREARLLSEYSELEEE  178 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445888899999999999999999999999888775222 4444433    2344556677777777778889999999


Q ss_pred             HHHHHHHHHHH
Q 005378          427 AAEASMALARI  437 (699)
Q Consensus       427 naelseALa~l  437 (699)
                      |..|-+.++.+
T Consensus       179 NIsLQKqVs~L  189 (772)
T KOG0999|consen  179 NISLQKQVSNL  189 (772)
T ss_pred             cchHHHHHHHH
Confidence            96665554433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.29  E-value=0.25  Score=55.57  Aligned_cols=88  Identities=20%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378          283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS  362 (699)
Q Consensus       283 K~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~  362 (699)
                      +++...++++++++..+.+-++....|+..+..++.++..+..++.....+    +...+..|+++..+|..++.+-...
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~----l~~~~~~I~~~~~~l~~l~~q~r~q  113 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD----LKKLRKQIADLNARLNALEVQEREQ  113 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            334444444455555444444455555555555555555555444443332    2234455555555555555555444


Q ss_pred             HHHHHHHHHHHH
Q 005378          363 EGNLASLQMNME  374 (699)
Q Consensus       363 k~rLeelq~E~~  374 (699)
                      +..|++.-.-..
T Consensus       114 r~~La~~L~A~~  125 (420)
T COG4942         114 RRRLAEQLAALQ  125 (420)
T ss_pred             HHHHHHHHHHHH
Confidence            445554444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.28  E-value=0.052  Score=52.70  Aligned_cols=121  Identities=21%  Similarity=0.290  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE  363 (699)
Q Consensus       284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k  363 (699)
                      .+-.+--.+.++|..+..|+-++..|+..+..++..|...+..+.....        .......|..||+-|+.+|....
T Consensus        22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------~~~~~E~l~rriq~LEeele~ae   93 (143)
T PF12718_consen   22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------RKSNAEQLNRRIQLLEEELEEAE   93 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHhHHHHHhhHHHHHHHHHHHH
Confidence            3333444445555555555555555555555555555554444444332        22344489999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK  413 (699)
Q Consensus       364 ~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk  413 (699)
                      .+|..+..-++.+.......+.. ...|+.+....+.+++.-...|..++
T Consensus        94 ~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~eel~~k~~~~k  142 (143)
T PF12718_consen   94 KKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEELEEKYKEAK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988 89999999999999988888777664

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.87  Score=55.59  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~  404 (699)
                      ++..+..++..++..|.-+..+++++..+-+..-+. +-.|+-.+++++...+.
T Consensus       266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-kt~lel~~kdlq~~i~~  318 (1200)
T KOG0964|consen  266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-KTKLELKIKDLQDQITG  318 (1200)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhhh
Confidence            334444444555555555555555555555554444 55566666666665554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.25  E-value=6.7e-05  Score=88.81  Aligned_cols=26  Identities=35%  Similarity=0.524  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378          447 KAGELEQKVAMLEVECATLQQELQDM  472 (699)
Q Consensus       447 ra~eLeqQ~smLe~dl~qLkQeLqd~  472 (699)
                      ++..++.++..++.....|..++...
T Consensus       299 ~~E~~~~el~~lq~e~~~Le~el~sW  324 (722)
T PF05557_consen  299 RLEELEEELAELQLENEKLEDELNSW  324 (722)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.31  Score=56.16  Aligned_cols=192  Identities=24%  Similarity=0.255  Sum_probs=121.0

Q ss_pred             HHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          371 MNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE  450 (699)
Q Consensus       371 ~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~e  450 (699)
                      +++..|+....+++.. ..+.+.+|..++.++.+=...|+.+-..-..|+..|-++-                 -.+-..
T Consensus        43 eeK~~Lkqq~eEleae-yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqES-----------------aakE~~  104 (772)
T KOG0999|consen   43 EEKEDLKQQLEELEAE-YDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQES-----------------AAKEEY  104 (772)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH-----------------HHhHHH
Confidence            4566777778788888 8888899999999999888888888655555555543333                 122234


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHH--HH--HH--HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 005378          451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA--NQ--AI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRV  524 (699)
Q Consensus       451 LeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~--~q--ei--~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~  524 (699)
                      .-+++-.|+.++++++++|...+...+++.+.....-  ++  ++  ..|+.|+...+-.-..+=..-+.+|++.=-|.+
T Consensus       105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK  184 (772)
T KOG0999|consen  105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK  184 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            4556666788888888888888888887765433321  11  11  344555543221101112344678888888888


Q ss_pred             HHHHHHH-hhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          525 EMAAMKR-DAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  586 (699)
Q Consensus       525 e~~~lq~-qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~  586 (699)
                      ++..++. |.+      ---++--|+.|+++..--..++|+...=|.--..|||-++-.+..+
T Consensus       185 qVs~LR~sQVE------yEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~E  241 (772)
T KOG0999|consen  185 QVSNLRQSQVE------YEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQE  241 (772)
T ss_pred             HHHHHhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            8887773 221      1234556677777777767777777666666666776665544443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.23  E-value=0.84  Score=54.73  Aligned_cols=163  Identities=18%  Similarity=0.243  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HhhccCChh------------
Q 005378          420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL--KRGQKKSPE------------  485 (699)
Q Consensus       420 e~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~--~r~qqk~~~------------  485 (699)
                      +..+|.++..|...|...|..|+.-+..+.....++..|-..+..++.-...-+...  .........            
T Consensus       274 L~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~  353 (717)
T PF09730_consen  274 LLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDING  353 (717)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhcccc
Confidence            445688888888889899998888887777777777777666666655111111110  000000000            


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHhHHHHH----HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 005378          486 ---------EANQAIQAWQDEVERARQGQRDAE----NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT  552 (699)
Q Consensus       486 ---------~~~qei~~leeEl~r~r~~~~~le----~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLt  552 (699)
                               .+..++..|+.|+..++.....++    ......+.+++.|..++..+..... ........|+..++.++
T Consensus       354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r-e~qeri~~LE~ELr~l~  432 (717)
T PF09730_consen  354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR-EDQERISELEKELRALS  432 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHH
Confidence                     011134556666655544332222    2222334445555555433332111 11234678888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          553 DLLYYKQTQLETMASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       553 e~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a  583 (699)
                      ...-+.+..|-....|..+..-.|-.+-...
T Consensus       433 ~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV  463 (717)
T PF09730_consen  433 KLAGESQGSLNSAQDELVTFSEELAQLYHHV  463 (717)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887777777776654443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.98  Score=53.99  Aligned_cols=161  Identities=10%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ  438 (699)
Q Consensus       359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQ  438 (699)
                      ++--+.+..++.+.+.+=++.+-- .+.-+..++.+|.+|.-.+.+       .--    |+.+..--...--++|..+.
T Consensus       411 lewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qq-------ls~----kl~Dvr~~~tt~kt~ie~~~  478 (1118)
T KOG1029|consen  411 LEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQ-------LSG----KLQDVRVDITTQKTEIEEVT  478 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------Hhh----hhhhheeccchHHHHHHHhh
Confidence            444455556666655554444432 222244555555555543322       222    33222222222234455555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHH--HH--HHHHHHH--HHHHHhHHHHHHhh
Q 005378          439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ--AI--QAWQDEV--ERARQGQRDAENKL  512 (699)
Q Consensus       439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~q--ei--~~leeEl--~r~r~~~~~le~~l  512 (699)
                      ...+-...+.++|..+++.+...+-.|-.+-+.+..++.+.+....+...+  ++  .....|+  .++++....++.+.
T Consensus       479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~  558 (1118)
T KOG1029|consen  479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET  558 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666777888888888888888888888777877777776554443332  12  1122222  13344444444555


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 005378          513 SSLEAEVQKMRVEMAAMKR  531 (699)
Q Consensus       513 ~~lE~elqkLr~e~~~lq~  531 (699)
                      .+.-.++.-+..++++++.
T Consensus       559 esk~~eidi~n~qlkelk~  577 (1118)
T KOG1029|consen  559 ESKLNEIDIFNNQLKELKE  577 (1118)
T ss_pred             HHHHHhhhhHHHHHHHHHH
Confidence            5555556666666666664

>PRK09039 hypothetical protein; Validated

Probab=97.14  E-value=0.13  Score=56.38  Aligned_cols=121  Identities=20%  Similarity=0.228  Sum_probs=91.0

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK  356 (699)
Q Consensus       277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le  356 (699)
                      ...++++.+.++..+++.|=+.+.-.+.+...++..+..|+.++...+..+..++..+.    .+......++.++..+.
T Consensus        47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~l~  122 (343)
T PRK09039         47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGELA  122 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHHHH
Confidence            34455666666666666666666666777788888888888888888877777666333    34455668888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (699)
Q Consensus       357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL  402 (699)
                      .+|...+...++..-+...|...+..+..+ +++++..|..++.+.
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~~  167 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            889999998888888888888888888877 777777777776555

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.08  E-value=0.99  Score=52.71  Aligned_cols=146  Identities=16%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHH
Q 005378          388 IQALREELASVERRAEEERAAHNATKM---AAMEREVELEHRAAEASMALARIQRIAD---ERTAKAGELEQKVAMLEVE  461 (699)
Q Consensus       388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~---ea~~Re~~LEeenaelseALa~lQrkL~---EEk~ra~eLeqQ~smLe~d  461 (699)
                      +..+..+|..+=..++.|..+++....   .....+..+...+..+..-+..+...+.   .+...+..+..++..+...
T Consensus       280 ~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~  359 (560)
T PF06160_consen  280 NEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR  359 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            555556666666667777666555532   2222233334444444444444433321   2334555666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 005378          462 CATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE  534 (699)
Q Consensus       462 l~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qle  534 (699)
                      +..+.+.+.+-..-...+... .......+..++.+..........+...=......+.+++..+..+++.++
T Consensus       360 ~~~~~~~i~~~~~~yS~i~~~-l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  360 YEDLEERIEEQQVPYSEIQEE-LEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHHcCCcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555553221111111100 000011112222222222222222222222445567777777777777777

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK11281 hypothetical protein; Provisional

Probab=97.07  E-value=1.6  Score=54.96  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=16.7

Q ss_pred             hHHhhhhHhHhHHhhc----chhHHHHHHHHHHHHHHHH
Q 005378          634 KLLDSGAVRATRFLWR----YPIARIILLFYLVFVHLFL  668 (699)
Q Consensus       634 ~~lDs~slr~g~fLRR----yP~aRl~~l~Y~vlLHlWV  668 (699)
                      ..++.++-++|.+-+-    -|.|=+|.++|.+.+-||+
T Consensus       522 ~~l~~~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~~  560 (1113)
T PRK11281        522 ARLQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLIF  560 (1113)
T ss_pred             HHHHHHHHhcCCcccCcccccHHHHHHHHHHHHHHHHHH
Confidence            4556565555554322    3444444555444334333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.05  E-value=0.86  Score=51.47  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=41.9

Q ss_pred             CCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (699)
Q Consensus       245 k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ  324 (699)
                      ...+.++.+++.+..++...+           -...|.+.+..+..++.+++..+.+....+..++..+..+...|..++
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~-----------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQD-----------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            344444455555544444444           266666666666666666666666666666666666666666666555


Q ss_pred             HHH
Q 005378          325 SEV  327 (699)
Q Consensus       325 ~er  327 (699)
                      .+.
T Consensus       108 ~q~  110 (420)
T COG4942         108 VQE  110 (420)
T ss_pred             HHH
Confidence            554

>PF13514 AAA_27: AAA domain

Probab=96.99  E-value=1.3  Score=55.70  Aligned_cols=40  Identities=23%  Similarity=0.264  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  580 (699)
Q Consensus       541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~  580 (699)
                      -..+..+..++...+...+..++.+..+...+..++..+.
T Consensus       454 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  493 (1111)
T PF13514_consen  454 VEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLA  493 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666677777777666666666653

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.96  E-value=0.21  Score=52.53  Aligned_cols=130  Identities=25%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005378          272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERE---LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL  348 (699)
Q Consensus       272 ~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe---k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eL  348 (699)
                      .++.++..+.+....+|.+..+.++..+..+.+   ....+++++.+++.++...+......+..+.  -.....++..|
T Consensus        17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~--~v~~~~e~~aL   94 (239)
T COG1579          17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS--AVKDERELRAL   94 (239)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence            344567888888888888888888888776544   4557777888888888888777777666442  12233344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (699)
Q Consensus       349 e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~  404 (699)
                      ...++.++.....+...+..+..+...+...+..+..+ +..++..+..++.+++.
T Consensus        95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~-~~~~e~~~~e~~~~~e~  149 (239)
T COG1579          95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER-LERLEKNLAEAEARLEE  149 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            55555555555555555544444444444444444333 44444444444444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.96  E-value=1.6  Score=53.08  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (699)
Q Consensus       345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~  382 (699)
                      .+..+.|.+.|+.++..++++++++..+++=|+.+..+
T Consensus       320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445567777777777777777777777777666655

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.96  E-value=0.47  Score=55.82  Aligned_cols=135  Identities=13%  Similarity=0.236  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 005378          433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKL  512 (699)
Q Consensus       433 ALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l  512 (699)
                      .|..++..++...+++..|..|+......+..   ++..++.......        .+....-.++..++...+.+...+
T Consensus       395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~---e~r~lk~~~~~~~--------~e~~~~~~~ik~~r~~~k~~~~e~  463 (594)
T PF05667_consen  395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIE---EYRRLKEKASNRE--------SESKQKLQEIKELREEIKEIEEEI  463 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666777777776654433322   2211221111000        011222234444444444555666


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          513 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  584 (699)
Q Consensus       513 ~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~  584 (699)
                      ...++...+|..++..+-.+      .+-.-|=.||.+.+-.+---++.|+.+..+-..|+.++..+..+++
T Consensus       464 ~~Kee~~~qL~~e~e~~~k~------~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  464 RQKEELYKQLVKELEKLPKD------VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777778887777654432      3356788899999887543336777666666555555555555443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.87  E-value=1.9  Score=52.78  Aligned_cols=191  Identities=21%  Similarity=0.232  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378          287 EYKSENAQLEELLVAERELSRSYEARIKQLE--QELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG  364 (699)
Q Consensus       287 ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ--~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~  364 (699)
                      |-.....++..++..+.++++.|+.+...|.  .+|+..+..+...  -|...+...++++..|......+-++-.....
T Consensus       181 ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYt--iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~  258 (1200)
T KOG0964|consen  181 ETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYT--IYDRELNEINGELERLEEDRSSAPEESEQYID  258 (1200)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhh--hhhhHHHHHHHHHHHHHHHHhccchhhhhHHH
Confidence            3444566677777777777777777665554  3455555544442  34445556677777888777777777888888


Q ss_pred             HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          365 NLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM-----AAMEREVELEHRAAEASMALARIQR  439 (699)
Q Consensus       365 rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~-----ea~~Re~~LEeenaelseALa~lQr  439 (699)
                      ++.+++.++..+...+.++++. +..|..+..+++.+.-.-...  -|+.     .+..+...-++.+......+..+..
T Consensus       259 ~~~~~~d~~~~~~~~i~ele~~-l~~l~~ekeq~~a~~t~~~k~--kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~  335 (1200)
T KOG0964|consen  259 ALDKVEDESEDLKCEIKELENK-LTNLREEKEQLKARETKISKK--KTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD  335 (1200)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence            9999999999999999998888 888887766666442111111  1111     1111111112222233445556666


Q ss_pred             HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhhccC
Q 005378          440 IADERTAKAGELEQKVAM-------LEVECATLQQELQDMEARLKRGQKK  482 (699)
Q Consensus       440 kL~EEk~ra~eLeqQ~sm-------Le~dl~qLkQeLqd~e~~~~r~qqk  482 (699)
                      ++.+...+.....-....       +...+..|+++..++-.+.-+..+.
T Consensus       336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqF  385 (1200)
T KOG0964|consen  336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQF  385 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            666666666555444444       4444444555444444444444333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.86  E-value=1.9  Score=52.38  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE  424 (699)
Q Consensus       345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LE  424 (699)
                      +++++......+.+...++..++++..+---|.++..+..++        +.+.+.+..                  +++
T Consensus       412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~~------------------~~~  465 (980)
T KOG0980|consen  412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSID------------------DVE  465 (980)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHH------------------HHH
Confidence            556666666666666666776666666666666555555555        333332221                  445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378          425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (699)
Q Consensus       425 eenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e  473 (699)
                      +++.++..-|.++++....--.+..+..+.++.++.++..+.-+++.++
T Consensus       466 ~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq  514 (980)
T KOG0980|consen  466 EENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ  514 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5565566555555555544444444455544445555555444444443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.85  E-value=0.00094  Score=79.25  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005378          312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL  355 (699)
Q Consensus       312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~L  355 (699)
                      ++..|+.++..++.++..+.. ......-+..+...|+.++..+
T Consensus       258 ~i~~LE~en~~l~~Elk~Lr~-~~~n~elLeEe~~sLq~kl~~~  300 (722)
T PF05557_consen  258 HIRELEKENRRLREELKHLRQ-SQENVELLEEEKRSLQRKLERL  300 (722)
T ss_dssp             --------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Confidence            355556666665555555544 2323334455555555555444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.84  E-value=2.2  Score=52.90  Aligned_cols=60  Identities=17%  Similarity=0.304  Sum_probs=28.0

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHh--hhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          510 NKLSSLEAEVQKMRVEMAAMKRD--AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK  569 (699)
Q Consensus       510 ~~l~~lE~elqkLr~e~~~lq~q--leq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er  569 (699)
                      ..+...+..+.+.+.+|.+++.-  ..+.....--++...+....+++.++-..++.+..+.
T Consensus       703 ~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~  764 (1074)
T KOG0250|consen  703 EHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEEL  764 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555556666666652  1122222233444455555555555544444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.78  E-value=1.1  Score=48.72  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH
Q 005378          446 AKAGELEQKVAMLEVECATLQQEL  469 (699)
Q Consensus       446 ~ra~eLeqQ~smLe~dl~qLkQeL  469 (699)
                      .-+.-|.+++.-|..+-+.|+.+|
T Consensus       178 ~lvN~L~Kqm~~l~~eKr~Lq~~l  201 (310)
T PF09755_consen  178 ALVNRLWKQMDKLEAEKRRLQEKL  201 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888887877777776665

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.73  E-value=0.6  Score=47.66  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378          435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (699)
Q Consensus       435 a~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e  473 (699)
                      ....+.+..++.+..++...+..+..++..|++.|.+.+
T Consensus       153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556666666777777777777777777777765543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.70  E-value=2.8  Score=52.24  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=17.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005378          279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEA  311 (699)
Q Consensus       279 aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~  311 (699)
                      .+-++........+.|.|+.+++++.....+.+
T Consensus      1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~ 1482 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRD 1482 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555566666666666555444333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.70  E-value=0.89  Score=46.52  Aligned_cols=179  Identities=21%  Similarity=0.307  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREV  421 (699)
Q Consensus       342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~  421 (699)
                      .++++.|..||+.++.++.+...++..++.-+..+.......+.. +       +.+.++..                  
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~-~-------Kv~enr~~------------------   56 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERG-M-------KVIENRAQ------------------   56 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-H-------HHHHHHHH------------------
Confidence            455667777788888888877777777777777777666666665 2       22222221                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 005378          422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERA  501 (699)
Q Consensus       422 ~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~  501 (699)
                      ++|+.--.+..-++.+.-...+--+++.+.-.++.+.+.+|+..-.       ++                         
T Consensus        57 kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee-------ra-------------------------  104 (205)
T KOG1003|consen   57 KLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE-------RA-------------------------  104 (205)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HH-------------------------
Confidence            1111111111222333333333335566666666666666654211       11                         


Q ss_pred             HHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          502 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  581 (699)
Q Consensus       502 r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  581 (699)
                          +..+.++..++.++..+...++.+...-+.|+ +..-.|+..|+.|++.|-+--+..+-...-...|....+++.-
T Consensus       105 ----E~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~-q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~  179 (205)
T KOG1003|consen  105 ----EAAESQSEELEEDLRILDSNLKSLSAKEEKLE-QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEE  179 (205)
T ss_pred             ----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHH
Confidence                12234444556666666666655554444443 5678899999999998887776666665555555555555544


Q ss_pred             HH
Q 005378          582 RL  583 (699)
Q Consensus       582 ~a  583 (699)
                      ++
T Consensus       180 kl  181 (205)
T KOG1003|consen  180 KL  181 (205)
T ss_pred             hh
Confidence            33

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.66  E-value=1.5  Score=56.25  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          544 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  581 (699)
Q Consensus       544 le~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  581 (699)
                      +..+|.++...|..-...+..+..+..++...+..+..
T Consensus       926 l~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~  963 (1353)
T TIGR02680       926 IRARLAETRAALASGGRELPRLAEALATAEEARGRAEE  963 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.63  E-value=0.00049  Score=81.57  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378          302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (699)
Q Consensus       302 lqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~  380 (699)
                      |++.+..|-.....|+.+|.....-+.+++. |..++......+.+...+.+.+..++..++.++..++.++.++....
T Consensus       337 Lee~N~~l~e~~~~LEeel~~~~~~~~qle~-~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~  414 (713)
T PF05622_consen  337 LEEDNAVLLETKAMLEEELKKARALKSQLEE-YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER  414 (713)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555666666666555444444433 44444445555555555555555566666666666666655554443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK09039 hypothetical protein; Validated

Probab=96.62  E-value=0.12  Score=56.68  Aligned_cols=40  Identities=15%  Similarity=0.297  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (699)
Q Consensus       347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke  386 (699)
                      +..-.+..|++++..++.++..++.++..+.....+...+
T Consensus       134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~  173 (343)
T PRK09039        134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK  173 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.60  E-value=2.2  Score=49.86  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh--cchh------hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 005378          514 SLEAEVQKMRVEMAAMKRDAEH--YSRE------EHMELEKRYRELTDLLYYKQ-------TQLETMASEKAAAEFQLEK  578 (699)
Q Consensus       514 ~lE~elqkLr~e~~~lq~qleq--~~~~------~~~ele~rl~eLte~L~eKQ-------~qlE~L~~Er~sL~~qLE~  578 (699)
                      .....+.+++..+..+++-+..  .|..      .=.....++..|...|...-       ..++......+.|.-+...
T Consensus       415 eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~d  494 (569)
T PRK04778        415 EAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEE  494 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666666654441  1211      11233455555655554422       2444555555555555555


Q ss_pred             HHHHHHH
Q 005378          579 EMNRLQE  585 (699)
Q Consensus       579 ~~~~a~~  585 (699)
                      +...+..
T Consensus       495 L~~~a~~  501 (569)
T PRK04778        495 LVENATL  501 (569)
T ss_pred             HHHHHHH
Confidence            5444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.59  E-value=1  Score=45.92  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE---RAAHNATKMAAM  417 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E---~~aHk~Tk~ea~  417 (699)
                      +-+.+++|+.--..|..+...++..++.+...+.+|...+.++.++        ++++|+++...   ..+|...|.   
T Consensus         6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q--------~~s~Qqal~~aK~l~eEledLk~---   74 (193)
T PF14662_consen    6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ--------LKSLQQALQKAKALEEELEDLKT---   74 (193)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH---
Confidence            4456777777777777778888888888888888887777776666        55555555443   334444444   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378          418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM  472 (699)
Q Consensus       418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~  472 (699)
                       -..++|+.+..+...-..+++.-+-=..++..|+.+..-+-.+.+-++.+..++
T Consensus        75 -~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL  128 (193)
T PF14662_consen   75 -LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL  128 (193)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence             344555555444443333333333333444444444444444444444444333

>PRK01156 chromosome segregation protein; Provisional

Probab=96.57  E-value=3  Score=50.97  Aligned_cols=31  Identities=13%  Similarity=0.187  Sum_probs=13.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          342 NSEIETLVSSIDALKKQAALSEGNLASLQMN  372 (699)
Q Consensus       342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E  372 (699)
                      ..++..+..++..+...+...+..+.++...
T Consensus       475 ~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~  505 (895)
T PRK01156        475 NEKKSRLEEKIREIEIEVKDIDEKIVDLKKR  505 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443333

>PRK01156 chromosome segregation protein; Provisional

Probab=96.46  E-value=3.5  Score=50.42  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=12.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378          448 AGELEQKVAMLEVECATLQQELQDME  473 (699)
Q Consensus       448 a~eLeqQ~smLe~dl~qLkQeLqd~e  473 (699)
                      ..+|...+..+......++..+.++.
T Consensus       418 ~~~l~~~i~~l~~~i~~l~~~~~el~  443 (895)
T PRK01156        418 LQDISSKVSSLNQRIRALRENLDELS  443 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444554444443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.43  E-value=3.9  Score=50.68  Aligned_cols=40  Identities=10%  Similarity=0.219  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005378          492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR  531 (699)
Q Consensus       492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~  531 (699)
                      ..++..+.++-..+-.+...|...+..+.++..++..+-.
T Consensus       859 ~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~  898 (1141)
T KOG0018|consen  859 NEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS  898 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            3334444443333444556777888888888888777653

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.43  E-value=1.8  Score=46.81  Aligned_cols=183  Identities=17%  Similarity=0.139  Sum_probs=95.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK  413 (699)
Q Consensus       334 ~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk  413 (699)
                      ++...+--+.++.+|......|...|+.-+..=+.++++..+...++..--..-=++. .-=+.++-++.+++.+|-..+
T Consensus        54 ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq-~skrdlelafqr~rdEw~~lq  132 (305)
T PF14915_consen   54 LTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQ-TSKRDLELAFQRARDEWVRLQ  132 (305)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hhHHHHHHHHHHHhhHHHHHH
Confidence            3334444555566666666666666666666666666666666666554322201111 112455666666667666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhhccCChhH
Q 005378          414 MAAMEREVELEHRAAEASMALARIQRIADERTAKA----GELEQKVAMLE---VECATLQQELQDMEARLKRGQKKSPEE  486 (699)
Q Consensus       414 ~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra----~eLeqQ~smLe---~dl~qLkQeLqd~e~~~~r~qqk~~~~  486 (699)
                      -.+---.+.+...|.-|+.-|..++.++.-=..+.    +.|+.+--.++   .++.+.+..+.+++......+.++.--
T Consensus       133 dkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~  212 (305)
T PF14915_consen  133 DKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKY  212 (305)
T ss_pred             HHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            55455566677777778888877777765444222    33444333332   344444444444444444333332221


Q ss_pred             H------HHHHHHHHHHHHHHHHhHHHHHHhhhhHHH
Q 005378          487 A------NQAIQAWQDEVERARQGQRDAENKLSSLEA  517 (699)
Q Consensus       487 ~------~qei~~leeEl~r~r~~~~~le~~l~~lE~  517 (699)
                      .      ..-+.+++.|-.-+++.+.++..+....+.
T Consensus       213 ~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek  249 (305)
T PF14915_consen  213 IGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK  249 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      112355555555556655555544443343

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.41  E-value=3.6  Score=50.05  Aligned_cols=43  Identities=33%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK  329 (699)
Q Consensus       287 ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q  329 (699)
                      +....+++++....+.+..+-.+++++..++.++..-|....+
T Consensus       341 e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe  383 (980)
T KOG0980|consen  341 EVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQE  383 (980)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4445556667666677888889999999999888776654443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.39  E-value=1.4  Score=48.13  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=14.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (699)
Q Consensus       337 aLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~  371 (699)
                      ++...+.++..+...+..++.++...+..+..++.
T Consensus       145 ~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~  179 (423)
T TIGR01843       145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISE  179 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.36  E-value=3.4  Score=49.15  Aligned_cols=225  Identities=18%  Similarity=0.201  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005378          252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRL----------QEYKSENAQLEELLVAERELSRSYEARIKQLEQELS  321 (699)
Q Consensus       252 QLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~----------~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~  321 (699)
                      +++++...++.|+.   .||.+.+++-.++.+-.          ++.+....+|++.-....+.+.....+...|.++|.
T Consensus       223 k~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~  299 (786)
T PF05483_consen  223 KFEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE  299 (786)
T ss_pred             HHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence            34444555555543   46777777777766644          444555666666544444444333334444444444


Q ss_pred             HHHHHHHHHH----------------------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          322 VYKSEVTKVE----------------------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM  373 (699)
Q Consensus       322 ~eQ~er~q~e----------------------------s~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~  373 (699)
                      ..+..+....                            .++.....+....+.+++..+..|+.-+..-..++.+...+.
T Consensus       300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l  379 (786)
T PF05483_consen  300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL  379 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3333332211                            133444444555556677777777777766667777776666


Q ss_pred             HHHhHhhhhhHHH------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---------------------H
Q 005378          374 ESIMRNRELTETR------MIQALREELASVERRAEEE------RAAHNATKMAAMER---------------------E  420 (699)
Q Consensus       374 ~~L~e~~s~~Eke------~lqSLE~eLkslQ~aLe~E------~~aHk~Tk~ea~~R---------------------e  420 (699)
                      ..+.-++.....+      -.+..+-+|..|...|+.-      ......+..++..+                     +
T Consensus       380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l  459 (786)
T PF05483_consen  380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQL  459 (786)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            6665555432111      0222223333333333221      11111111111111                     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378          421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (699)
Q Consensus       421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~  479 (699)
                      ...-..++.|+..+..+...|..++.+-.+|-..+..+..+-+++.|+..++-..+...
T Consensus       460 ~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~  518 (786)
T PF05483_consen  460 TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ  518 (786)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            22233457778888888888888888888887778888888888888877765554433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.34  E-value=1.5  Score=44.82  Aligned_cols=120  Identities=22%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 005378          354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA-----  428 (699)
Q Consensus       354 ~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeena-----  428 (699)
                      .++.+++.+|..+..+++++++|......++++ .++|..++.+++..-..-...+.-++.    |...|-..+.     
T Consensus        64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~Q  138 (193)
T PF14662_consen   64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHHH
Confidence            345556666666666666666666666666666 666666666666554444444333333    3333322332     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378          429 --EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (699)
Q Consensus       429 --elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r  478 (699)
                        .+...+..-...+.+....+.+|...+.....--..++.++..++.++.+
T Consensus       139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              33333333334444444555555544444444444555555555554443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.26  E-value=4.1  Score=49.10  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=40.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhhh----hcchhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          509 ENKLSSLEAEVQKMRVEMAAMKRDAE----HYSREEH-------MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE  577 (699)
Q Consensus       509 e~~l~~lE~elqkLr~e~~~lq~qle----q~~~~~~-------~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE  577 (699)
                      +.++.....++..|+.+++.++..+.    +| ....       ..|+.++..+.....+.+..+..|..|..++..---
T Consensus       358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~-~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~  436 (717)
T PF09730_consen  358 ECKYKVAVSEVIQLKAELKALKSKYNELEERY-KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAG  436 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            45555566667777777666653222    12 1222       334444444444444444577777777766666555


Q ss_pred             HHHHHHHHHH
Q 005378          578 KEMNRLQEVQ  587 (699)
Q Consensus       578 ~~~~~a~~~~  587 (699)
                      .....+..++
T Consensus       437 E~q~~LnsAQ  446 (717)
T PF09730_consen  437 ESQGSLNSAQ  446 (717)
T ss_pred             hHHHHHHHHH
Confidence            5444444443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.24  E-value=1.2  Score=43.56  Aligned_cols=99  Identities=20%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ  370 (699)
Q Consensus       291 e~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq  370 (699)
                      ..-+++..+.+.+...+.|++++..|+++|...+..+..+.-+    ..-...++..|+..|..+...+..+...|..+.
T Consensus         4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~   79 (140)
T PF10473_consen    4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLR   79 (140)
T ss_pred             HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777788888889999999999999999999888876542    233566777788888888777777777777777


Q ss_pred             HHHHHHhHhhhhhHHHHHHHHHHH
Q 005378          371 MNMESIMRNRELTETRMIQALREE  394 (699)
Q Consensus       371 ~E~~~L~e~~s~~Eke~lqSLE~e  394 (699)
                      .++..|...+.....+ +..|+..
T Consensus        80 sEk~~L~k~lq~~q~k-v~eLE~~  102 (140)
T PF10473_consen   80 SEKENLDKELQKKQEK-VSELESL  102 (140)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            7777776666655555 4444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.16  E-value=1.1  Score=50.86  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378          363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE  405 (699)
Q Consensus       363 k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E  405 (699)
                      +.++.+++.++..+.....+.+-. +..++.+|..++..+..+
T Consensus       253 ~~~l~~l~~~l~~l~~~y~~~hP~-v~~l~~qi~~l~~~l~~~  294 (498)
T TIGR03007       253 DGRIEALEKQLDALRLRYTDKHPD-VIATKREIAQLEEQKEEE  294 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhcccChH-HHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444433 444445555555554443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.14  E-value=3.9  Score=47.73  Aligned_cols=87  Identities=16%  Similarity=0.347  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378          283 SRLQEYKSENAQLEELLVAERE---LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA  359 (699)
Q Consensus       283 K~~~ELkke~aqLEe~l~elqe---k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL  359 (699)
                      ..+..+++.+..|++++.+...   +...|+.+...|+.++...|+-..++++-.           ..+.+.|..+..++
T Consensus       235 ~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~-----------~~~~~~l~~l~~Ei  303 (581)
T KOG0995|consen  235 NEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKK-----------QHMEKKLEMLKSEI  303 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHH
Confidence            3444555555555555443211   223555566666666666555555544311           13334444444444


Q ss_pred             HHHHHHHHHHHHHHHHHhHhh
Q 005378          360 ALSEGNLASLQMNMESIMRNR  380 (699)
Q Consensus       360 ~r~k~rLeelq~E~~~L~e~~  380 (699)
                      +..+...+.++.++..|+..+
T Consensus       304 e~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  304 EEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.06  E-value=3.4  Score=46.30  Aligned_cols=52  Identities=13%  Similarity=0.212  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378          349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR  401 (699)
Q Consensus       349 e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a  401 (699)
                      ..-+..+.+++.++.+....++..+..|-.....++.+ ++++...-+.||..
T Consensus       129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq-~qsl~a~~k~LQ~s  180 (499)
T COG4372         129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ-AQSLQASQKQLQAS  180 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444 55555444555544

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.92  E-value=1.6  Score=41.54  Aligned_cols=110  Identities=17%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL  423 (699)
Q Consensus       344 Ei~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~L  423 (699)
                      ...+...++..+..++.........++..-.+=+..|....+. |..++.++..++..+..-+..-..++..+......|
T Consensus        18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~-L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw   96 (132)
T PF07926_consen   18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKE-LQQLREELQELQQEINELKAEAESAKAELEESEASW   96 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3335555566666666666666666666666666666666555 667776666666666554444444555555555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005378          424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVE  461 (699)
Q Consensus       424 EeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~d  461 (699)
                      ++++..|       +..+.+-..++.+|..|..+|=..
T Consensus        97 ~~qk~~l-------e~e~~~~~~r~~dL~~QN~lLh~Q  127 (132)
T PF07926_consen   97 EEQKEQL-------EKELSELEQRIEDLNEQNKLLHDQ  127 (132)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555333       344444445556666666655433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.92  E-value=2.8  Score=44.33  Aligned_cols=49  Identities=16%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          366 LASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA  415 (699)
Q Consensus       366 Leelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~e  415 (699)
                      +..+.-++..+.++...++.+ +.-+..++..++.-....+..|..++..
T Consensus        91 ~~aL~~E~~~ak~r~~~le~e-l~~l~~~~~~l~~~i~~l~~~~~~~e~~  139 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDE-LAELMEEIEKLEKEIEDLKERLERLEKN  139 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444 3334444444444444444444444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.83  E-value=9.2  Score=49.44  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378          284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (699)
Q Consensus       284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~  322 (699)
                      ++.+|..+.+.|+..+.++.+....+..++..|..+...
T Consensus       743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~  781 (1353)
T TIGR02680       743 RIAELDARLAAVDDELAELARELRALGARQRALADELAG  781 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555555555555555555555555433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF14992 TMCO5: TMCO5 family

Probab=95.75  E-value=3.4  Score=44.56  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378          364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE  405 (699)
Q Consensus       364 ~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E  405 (699)
                      ..+.++-+.|..+..++...|.. +++|+.++...-..++.+
T Consensus        11 ~d~Q~ldE~Nq~lL~ki~~~E~~-iq~Le~Eit~~~~~~~~~   51 (280)
T PF14992_consen   11 KDEQRLDEANQSLLQKIQEKEGA-IQSLEREITKMDHIADRS   51 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccCch
Confidence            34455566677777777777777 777777776666555443

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=95.69  E-value=3.2  Score=46.78  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          358 QAALSEGNLASLQMNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKM  414 (699)
Q Consensus       358 eL~r~k~rLeelq~E~~~L~e~~s~-----------------------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~  414 (699)
                      -+.++=.++.+++.+++-|+.++..                       .++.+++-|+.++..+...+..-+..|..--+
T Consensus       202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~  281 (552)
T KOG2129|consen  202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM  281 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566667788888888888877643                       24555566666666666666665666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005378          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE  459 (699)
Q Consensus       415 ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe  459 (699)
                      ++.+-+..++++|       ..+|++|..+..+-.-|.++++..+
T Consensus       282 qy~~Ee~~~reen-------~rlQrkL~~e~erRealcr~lsEse  319 (552)
T KOG2129|consen  282 QYRAEEVDHREEN-------ERLQRKLINELERREALCRMLSESE  319 (552)
T ss_pred             HHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            6666666666555       5788888888777666666655433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=95.66  E-value=3.2  Score=42.87  Aligned_cols=154  Identities=18%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005378          270 KEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE  346 (699)
Q Consensus       270 ke~qLa~~~aRLrK~~~ELkke~aqLEe~---l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~  346 (699)
                      |.+.|+-+...|++.++|+......+=.+   +++.+......+..+..|+..+..-..++..-+    ..|..+.++++
T Consensus         8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce----~ELqr~~~Ea~   83 (202)
T PF06818_consen    8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE----NELQRKKNEAE   83 (202)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH----HHHHHHhCHHH
Confidence            45667777778887777776554433322   222222222333333333333333222222222    22333444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          347 TLVSSIDALKKQAALSEGNLASL---QMNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAME  418 (699)
Q Consensus       347 eLe~RL~~LeqeL~r~k~rLeel---q~E~~~L~e~~s~~-----Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~  418 (699)
                      -|...+..++.++..++..+..+   ..+...+.......     ....+.++..++..+...|..|+..+......|-.
T Consensus        84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~  163 (202)
T PF06818_consen   84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ  163 (202)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            55555555555555555555554   11111111100000     11225667777777777777777666665554444


Q ss_pred             HHHHHHHHH
Q 005378          419 REVELEHRA  427 (699)
Q Consensus       419 Re~~LEeen  427 (699)
                      -=..+.+++
T Consensus       164 ER~~W~eEK  172 (202)
T PF06818_consen  164 ERRTWQEEK  172 (202)
T ss_pred             HHHHHHHHH
Confidence            333444444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.66  E-value=6.2  Score=46.18  Aligned_cols=46  Identities=15%  Similarity=0.183  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378          422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ  467 (699)
Q Consensus       422 ~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ  467 (699)
                      +.+.++..|...+.++...+.|.+.....++.++.+++..|...++
T Consensus       436 ~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~  481 (581)
T KOG0995|consen  436 EAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE  481 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445555555555555555555555544444433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.64  E-value=3.5  Score=49.52  Aligned_cols=191  Identities=17%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhH--H
Q 005378          278 CAGLSSRLQEYKSENAQLEELLVAERELSR--------SYEARIKQLEQELSVYKSEVTKVESNLA---EALAAKNS--E  344 (699)
Q Consensus       278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~--------~Lq~kl~qLQ~EL~~eQ~er~q~es~~~---eaLaak~s--E  344 (699)
                      ..=|.+++.+++.+..+.|..+...+.+..        ....++..|..+|...+.++...+..+.   ..+.....  .
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~  275 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDV  275 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            455566666666666666666555544322        1123455555555555544444333211   11110000  0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 005378          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK----MAAMERE  420 (699)
Q Consensus       345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk----~ea~~Re  420 (699)
                      +......-...+..+..++.++..++.+...+.....+.+-. +..++.+|..+++.+..|......+-    ..+..|+
T Consensus       276 ~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~-v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~  354 (754)
T TIGR01005       276 LPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPR-VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARE  354 (754)
T ss_pred             hhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000112345555555666666555555555555555 55666677777777666655543321    1111222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005378          421 VELEHRAAEASMALARIQRIA---DERTAKAGELEQKVAMLEVECATLQQELQDMEARL  476 (699)
Q Consensus       421 ~~LEeenaelseALa~lQrkL---~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~  476 (699)
                      ..|       ...+..++.++   .....+...|+++....+.-|..+-+++++.....
T Consensus       355 ~~L-------~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       355 SQL-------VSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HHH-------HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222       22222222222   22235566777777777777777777776665444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=95.63  E-value=3.4  Score=43.96  Aligned_cols=100  Identities=15%  Similarity=0.238  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHhhhhhHHHH
Q 005378          312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN----MESIMRNRELTETRM  387 (699)
Q Consensus       312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E----~~~L~e~~s~~Eke~  387 (699)
                      ...+.+.+|..-|..-...+.++..+|-.......+|+.+.++|.-++.+.|.+.+.-..+    ...|..+++.... |
T Consensus        28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a-i  106 (333)
T KOG1853|consen   28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA-I  106 (333)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3444444444444433333333333333333444455556666655555555554433222    2223333333322 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          388 IQALREELASVERRAEEERAAHNAT  412 (699)
Q Consensus       388 lqSLE~eLkslQ~aLe~E~~aHk~T  412 (699)
                      +..+++-++.|+++-.--..+-++|
T Consensus       107 keql~kyiReLEQaNDdLErakRat  131 (333)
T KOG1853|consen  107 KEQLRKYIRELEQANDDLERAKRAT  131 (333)
T ss_pred             HHHHHHHHHHHHHhccHHHHhhhhh
Confidence            5555555555555544433333333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=7.7  Score=47.08  Aligned_cols=18  Identities=17%  Similarity=0.047  Sum_probs=13.1

Q ss_pred             CchhhhhHHHHHHHHHhh
Q 005378          246 PTKEQDQLDEAQGLLKTT  263 (699)
Q Consensus       246 ~~~lqkQLeE~n~~LrsE  263 (699)
                      ..+|-++++-.++++.+-
T Consensus       620 f~kL~kele~~i~k~ls~  637 (970)
T KOG0946|consen  620 FKKLFKELEGLIAKLLSS  637 (970)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            356777888888877765

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.61  E-value=9.8  Score=48.18  Aligned_cols=28  Identities=7%  Similarity=0.119  Sum_probs=11.8

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005378          449 GELEQKVAMLEVECATLQQELQDMEARL  476 (699)
Q Consensus       449 ~eLeqQ~smLe~dl~qLkQeLqd~e~~~  476 (699)
                      ..+.++....+..+.+++|-+...+.+.
T Consensus       282 n~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        282 DLIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.61  E-value=5.1  Score=44.92  Aligned_cols=13  Identities=23%  Similarity=0.215  Sum_probs=5.8

Q ss_pred             HHHHHHHhHHhhh
Q 005378          627 VQLQKAAKLLDSG  639 (699)
Q Consensus       627 rrvk~A~~~lDs~  639 (699)
                      +++..+...+-++
T Consensus       352 ~r~~~~t~q~~~G  364 (499)
T COG4372         352 RRRRPATRQSPSG  364 (499)
T ss_pred             hhhhhhhccCCCC
Confidence            3444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.58  E-value=1.3  Score=48.14  Aligned_cols=119  Identities=29%  Similarity=0.346  Sum_probs=75.6

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK  356 (699)
Q Consensus       277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le  356 (699)
                      +...|....+.|+...+.|...+..+.+..-.+......|..++..++........-       -..++..++.+|..+.
T Consensus       150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~-------D~~eL~~lr~eL~~~~  222 (325)
T PF08317_consen  150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC-------DQEELEALRQELAEQK  222 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------CHHHHHHHHHHHHHHH
Confidence            555566666666666666666655556666666666666666666666554443332       2345556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (699)
Q Consensus       357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe  403 (699)
                      .++...+..+.+++.++..+...+..+..+ ++.+..+|+.++.-.+
T Consensus       223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  223 EEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            667777777777777777777777666666 6666667776665554

>PRK11281 hypothetical protein; Provisional

Probab=95.47  E-value=11  Score=47.82  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=20.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME  374 (699)
Q Consensus       338 Laak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~  374 (699)
                      |+..++++..++.+.++++..+.....++.+......
T Consensus       144 La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~  180 (1113)
T PRK11281        144 LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK  180 (1113)
T ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445555556666666666666666666555555443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.47  E-value=1.5  Score=47.78  Aligned_cols=46  Identities=17%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378          338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (699)
Q Consensus       338 Laak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~  383 (699)
                      |.....+++..+..+..++.++...+..++++.+.+..+...+.+.
T Consensus       218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444444444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.41  E-value=3.7  Score=42.00  Aligned_cols=18  Identities=28%  Similarity=0.405  Sum_probs=7.1

Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 005378          456 AMLEVECATLQQELQDME  473 (699)
Q Consensus       456 smLe~dl~qLkQeLqd~e  473 (699)
                      ..+...+..+..++..+.
T Consensus       167 ~~~~~~~~~l~~ei~~L~  184 (194)
T PF15619_consen  167 KEAQEEVKSLQEEIQRLN  184 (194)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333344444444443333

>PF13514 AAA_27: AAA domain

Probab=95.28  E-value=12  Score=47.21  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378          447 KAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (699)
Q Consensus       447 ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~  479 (699)
                      ++..+..++..++..+..+..++..++.++...
T Consensus       802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L  834 (1111)
T PF13514_consen  802 ERERLQEQLEELEEELEQAEEELEELEAELAEL  834 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555554443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.15  E-value=1.2  Score=48.43  Aligned_cols=120  Identities=22%  Similarity=0.287  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHhh-------hhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378          252 QLDEAQGLLKTT-------ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (699)
Q Consensus       252 QLeE~n~~LrsE-------~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ  324 (699)
                      .|++-|..||.|       +.+...|+.+|-.-|+   +++.+...+++.|.+.+..-.+-+...+.++.+|.+++-.+|
T Consensus       171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv---~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ  247 (306)
T PF04849_consen  171 SLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV---KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ  247 (306)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH---HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577777777777       3455566777766665   355666666666666555445555555566666666666655


Q ss_pred             HHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          325 SEVTKV---ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME  374 (699)
Q Consensus       325 ~er~q~---es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~  374 (699)
                      ....+.   .+++...|.+...-...|...+..++......-.-|.+.+++.+
T Consensus       248 ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk  300 (306)
T PF04849_consen  248 QRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK  300 (306)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544442   22233333333333333444444444444444444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.06  E-value=2.9  Score=39.82  Aligned_cols=124  Identities=16%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHH
Q 005378          437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLE  516 (699)
Q Consensus       437 lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE  516 (699)
                      ++..+..-.....+...++..+..++.........++...++...+-..... .+..++.++..++.....+...+....
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~-~L~~lr~e~~~~~~~~~~l~~~~~~a~   86 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIK-ELQQLREELQELQQEINELKAEAESAK   86 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445555555555555655555555555555555433333322 234444444433322222222222222


Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          517 AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       517 ~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~  579 (699)
                      ..+...+                  .-.+.+=..|..++.+-+..+++|...+.-|--|||.+
T Consensus        87 ~~l~~~e------------------~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   87 AELEESE------------------ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            2222222                  23344555566666666677777777777777777753

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.04  E-value=6.6  Score=42.85  Aligned_cols=67  Identities=19%  Similarity=0.320  Sum_probs=39.4

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH
Q 005378          454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA  528 (699)
Q Consensus       454 Q~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~  528 (699)
                      ++..+......|+..|.-|..+...-+. +..-.+..-..|+.|+.+..       .++..+|.+...++..|..
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~-tL~kSNe~F~tfk~Emekm~-------Kk~kklEKE~~~~k~k~e~  269 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQD-TLNKSNEVFETFKKEMEKMS-------KKIKKLEKENQTWKSKWEK  269 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            7777888888888888888766665442 12222333355666665432       3344566666666665543

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.95  E-value=5.4  Score=41.35  Aligned_cols=76  Identities=22%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378          394 ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM  472 (699)
Q Consensus       394 eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~  472 (699)
                      -+.....++..+...|.+++..+.   ..|+.+|.+++......+..+.-=...+--.+-++..|+..+++-.++.+++
T Consensus       119 ~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL  194 (207)
T PF05010_consen  119 CIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL  194 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555566666666544   3445666555544433333332222333333444444555555544444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=12  Score=45.39  Aligned_cols=35  Identities=11%  Similarity=-0.122  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          547 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  581 (699)
Q Consensus       547 rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  581 (699)
                      .+-.++++-.+++--++....-..+|.--|+.+..
T Consensus       905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q  939 (970)
T KOG0946|consen  905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ  939 (970)
T ss_pred             cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence            34444444444444444444444444444444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.88  E-value=0.21  Score=50.37  Aligned_cols=107  Identities=24%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHH
Q 005378          274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVS  350 (699)
Q Consensus       274 La~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es---~~~eaLaak~sEi~eLe~  350 (699)
                      +.-....+++-++++.+.+.++...+..+......++..+...+..+..++.++...+.   .+...+..++..++.|..
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D  151 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD  151 (194)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666666666666666555544444433333333333333332222222221   122334445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378          351 SIDALKKQAALSEGNLASLQMNMESIMRNR  380 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~  380 (699)
                      .+.+|+-++..++.++.+++.|+..|-++.
T Consensus       152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  152 ELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555556666666666666655555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=9.2  Score=43.70  Aligned_cols=67  Identities=19%  Similarity=0.223  Sum_probs=48.2

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ-TQLETMASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ-~qlE~L~~Er~sL~~qLE~~~~~a  583 (699)
                      .++.+.++...+|++++..      .+..+.-..|..||++++-.. .|| +.|-.+.+|...|+.|+.....++
T Consensus       359 eei~~~eel~~~Lrsele~------lp~dv~rk~ytqrikEi~gni-RKq~~DI~Kil~etreLqkq~ns~se~L  426 (521)
T KOG1937|consen  359 EEIESNEELAEKLRSELEK------LPDDVQRKVYTQRIKEIDGNI-RKQEQDIVKILEETRELQKQENSESEAL  426 (521)
T ss_pred             HHHHhhHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666665543      234455789999999998764 565 789999999999999988876654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.76  E-value=7.9  Score=42.35  Aligned_cols=10  Identities=30%  Similarity=0.431  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 005378          460 VECATLQQEL  469 (699)
Q Consensus       460 ~dl~qLkQeL  469 (699)
                      ..+..++.++
T Consensus       253 ~~l~~~~~~l  262 (423)
T TIGR01843       253 ARLAELRERL  262 (423)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.76  E-value=12  Score=44.44  Aligned_cols=35  Identities=20%  Similarity=0.128  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          546 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  580 (699)
Q Consensus       546 ~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~  580 (699)
                      ..||+.=+.|+..-...-.+..|..-|.-|++...
T Consensus       557 a~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~  591 (594)
T PF05667_consen  557 ASLHENCSQLIETVEETGTISREIRDLEEQIDTES  591 (594)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            35666666777776666677777777777776543

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.67  E-value=8.1  Score=43.19  Aligned_cols=122  Identities=12%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005378          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRS---------YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET  347 (699)
Q Consensus       277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~---------Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~e  347 (699)
                      ...-|.+++.+++.+....|..+...+.+...         ...++..|..++...+..+......+..    . .....
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~----~-~~~~~  246 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGG----S-SGKDA  246 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c-CCccc
Confidence            46667777777777777777777766554432         2234555555555555444433221110    0 00000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER  406 (699)
Q Consensus       348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~  406 (699)
                      + ..+ .....+..++.++..++.++..+.....+.+-. +.+++.+|..++..+..+.
T Consensus       247 ~-~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~-v~~l~~~i~~l~~~l~~e~  302 (444)
T TIGR03017       247 L-PEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQ-YKRAQAEINSLKSQLNAEI  302 (444)
T ss_pred             c-hhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHHHHH
Confidence            0 000 011224445555566666666665555555555 4556666666666665443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.61  E-value=13  Score=44.21  Aligned_cols=80  Identities=19%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ  370 (699)
Q Consensus       291 e~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq  370 (699)
                      +...+|..+.++......+..++..++.++...+..+...+..++..=.....++..|+.++..++.++...+..+.++.
T Consensus       210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~  289 (650)
T TIGR03185       210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA  289 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444455555555444444444444433223334444555555555555555554444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=94.57  E-value=11  Score=43.13  Aligned_cols=108  Identities=12%  Similarity=0.113  Sum_probs=83.9

Q ss_pred             HHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          259 LLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL  338 (699)
Q Consensus       259 ~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaL  338 (699)
                      ..+.+++.-..|++||   .+||++..+-+++....+|..     .....|+.++..++..+.+.+....++...+..++
T Consensus       169 q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~  240 (554)
T KOG4677|consen  169 QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRT  240 (554)
T ss_pred             hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4567777788899998   889999999999998888885     45678888899999999999999999888888888


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME  374 (699)
Q Consensus       339 aak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~  374 (699)
                      -.+.-++..+-.-++-+..-+-.-+.+..+.+.-.+
T Consensus       241 ~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~  276 (554)
T KOG4677|consen  241 LSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLD  276 (554)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888876665666666666666665555544433

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.57  E-value=6.7  Score=40.67  Aligned_cols=151  Identities=21%  Similarity=0.247  Sum_probs=75.5

Q ss_pred             hhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHH---hHHHHHHHHHHHHHHHHHHH
Q 005378          250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAE-REL---SRSYEARIKQLEQELSVYKS  325 (699)
Q Consensus       250 qkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~el-qek---~~~Lq~kl~qLQ~EL~~eQ~  325 (699)
                      ++.+|.+...++.++.....+...|-.-+..+.....++.+-....|..+..+ .+.   .......+..+..+......
T Consensus         4 ~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~   83 (207)
T PF05010_consen    4 QKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYA   83 (207)
T ss_pred             HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHH
Confidence            45677788888877543333444444444444455555555555555544332 111   11222234444444444444


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH----HHHHHHHHH
Q 005378          326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELASVERR  401 (699)
Q Consensus       326 er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE----~eLkslQ~a  401 (699)
                      .+.+++..|.           +|-.|...+..-+.-.+...+.+.........++...+.+ .++|.    ..|..+-.-
T Consensus        84 dL~s~E~sfs-----------dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqr-y~aLK~hAeekL~~ANee  151 (207)
T PF05010_consen   84 DLNSLEKSFS-----------DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQR-YQALKAHAEEKLEKANEE  151 (207)
T ss_pred             HHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            4444443333           6666666666666666666665555555555555444443 33333    445555555


Q ss_pred             HHHHHHHHHHH
Q 005378          402 AEEERAAHNAT  412 (699)
Q Consensus       402 Le~E~~aHk~T  412 (699)
                      +++-+..|.+-
T Consensus       152 i~~v~~~~~~e  162 (207)
T PF05010_consen  152 IAQVRSKHQAE  162 (207)
T ss_pred             HHHHHHHhHHH
Confidence            55555554443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.56  E-value=6.4  Score=40.38  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA  359 (699)
Q Consensus       280 RLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL  359 (699)
                      .|++.++++++.-...+..+.+.......|..-+..++.+...++..+..-+. ....|....+.+..++..|..+.-+-
T Consensus        31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k-dK~~L~~~k~rl~~~ek~l~~Lk~e~  109 (201)
T PF13851_consen   31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK-DKQSLQNLKARLKELEKELKDLKWEH  109 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555544444444444444455555555555544444433 23355556667777788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhh
Q 005378          360 ALSEGNLASLQMNMESIMRNRELT  383 (699)
Q Consensus       360 ~r~k~rLeelq~E~~~L~e~~s~~  383 (699)
                      +.+..+..+++.+++.|.......
T Consensus       110 evL~qr~~kle~ErdeL~~kf~~~  133 (201)
T PF13851_consen  110 EVLEQRFEKLEQERDELYRKFESA  133 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888777664

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.51  E-value=8.8  Score=41.78  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378          366 LASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (699)
Q Consensus       366 Leelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL  402 (699)
                      ++.+...+.-|.+.++..+.. ..+|+.+|+-+.-+|
T Consensus       139 ~S~lkd~ne~LsQqLskaesK-~nsLe~elh~trdaL  174 (305)
T PF14915_consen  139 VSNLKDNNEILSQQLSKAESK-FNSLEIELHHTRDAL  174 (305)
T ss_pred             HHhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            444445555555555555555 555555555555444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.46  E-value=15  Score=44.25  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          557 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  587 (699)
Q Consensus       557 eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~  587 (699)
                      .++.++..|..|....+..++.+..++.+..
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~  403 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA  403 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777777776654

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.46  E-value=8.4  Score=41.35  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR--MIQALREELASVERRAEEERAAHNATKMAAMEREVE  422 (699)
Q Consensus       345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke--~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~  422 (699)
                      +.++-.|+.++..=+.--+.-++....+...|...-...+..  -+.++..++......|+-++.+-+..-+.+..++.+
T Consensus       129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~  208 (265)
T COG3883         129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS  208 (265)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888777777777777777777777666555433  133333445555555555555555555555556666


Q ss_pred             HHHHHHHH
Q 005378          423 LEHRAAEA  430 (699)
Q Consensus       423 LEeenael  430 (699)
                      .+.+.+.+
T Consensus       209 ~~~e~a~l  216 (265)
T COG3883         209 ALGEKAAL  216 (265)
T ss_pred             hHHHHHHH
Confidence            55555333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.43  E-value=14  Score=43.76  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=40.5

Q ss_pred             HhHHhhhhHhHhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005378          633 AKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ  678 (699)
Q Consensus       633 ~~~lDs~slr~g~fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~~  678 (699)
                      ...+|.+.+-+|+|+-.+-++|.+||||+|+||..||+||+ .-+.
T Consensus       575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~-~~~~  619 (629)
T KOG0963|consen  575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY-LGAA  619 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence            35679999999999999999999999999999999999999 5543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.30  E-value=3.8  Score=44.81  Aligned_cols=119  Identities=19%  Similarity=0.262  Sum_probs=68.3

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK  356 (699)
Q Consensus       277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le  356 (699)
                      +...|.+....|+.....|...+..+.+..-.+..+...|..++..++..-...++-       -.+++..++.+|....
T Consensus       145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~-------d~~eL~~lk~~l~~~~  217 (312)
T smart00787      145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC-------DPTELDRAKEKLKKLL  217 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC-------CHHHHHHHHHHHHHHH
Confidence            444555555555555555555444444455555555555555555555444443320       1234445556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (699)
Q Consensus       357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe  403 (699)
                      .++...+..++.++.++..+...+.....+ ++.++.+|+.++.-++
T Consensus       218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~~  263 (312)
T smart00787      218 QEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKLE  263 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            666666666777777777777777666666 6666666666666553

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.22  E-value=16  Score=43.54  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          346 ETLVSSIDALKKQAALSEGNLASLQMNMESI  376 (699)
Q Consensus       346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L  376 (699)
                      ..+..++..+.+++...+..++.++...+.+
T Consensus       219 ~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l  249 (650)
T TIGR03185       219 KEQSEKYEDLAQEIAHLRNELEEAQRSLESL  249 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=18  Score=43.67  Aligned_cols=157  Identities=13%  Similarity=0.167  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA--HNATKMA-AM  417 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~a--Hk~Tk~e-a~  417 (699)
                      .=+..++++.++..|-+++......-=++-.+...+.+.+..+.+. +.-++..+.++..........  +-..+.. ..
T Consensus       459 ~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~e-k~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt  537 (698)
T KOG0978|consen  459 IGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREE-KSKLEEQILTLKASVDKLELKIGKLEEQERGLT  537 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344555666666666666666666666666666666666555444 555555544444333321111  1111111 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 005378          418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDE  497 (699)
Q Consensus       418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeE  497 (699)
                      .+...+..+-.-+..++....++..+-...+..|+.++......+.+++..+.+....+.....+        ...+++|
T Consensus       538 ~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k--------~~rleEE  609 (698)
T KOG0978|consen  538 SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK--------RKRLEEE  609 (698)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence            12344455555566677777777777777777787777777777777777777666555544322        3567777


Q ss_pred             HHHHHHhHH
Q 005378          498 VERARQGQR  506 (699)
Q Consensus       498 l~r~r~~~~  506 (699)
                      +.+++...+
T Consensus       610 ~e~L~~kle  618 (698)
T KOG0978|consen  610 LERLKRKLE  618 (698)
T ss_pred             HHHHHHHHH
Confidence            777765444

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.05  E-value=0.015  Score=69.29  Aligned_cols=19  Identities=47%  Similarity=0.548  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005378          550 ELTDLLYYKQTQLETMASE  568 (699)
Q Consensus       550 eLte~L~eKQ~qlE~L~~E  568 (699)
                      ++.+++..+...++.+..+
T Consensus       551 e~~~e~~~~~~~le~l~~~  569 (713)
T PF05622_consen  551 ELKDELQKKREQLEELEQE  569 (713)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.95  E-value=13  Score=45.46  Aligned_cols=125  Identities=26%  Similarity=0.280  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS---VERRAEEERAAHNATKMAAM  417 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLks---lQ~aLe~E~~aHk~Tk~ea~  417 (699)
                      .......+...+..++..-..+...+.+++.+.+.++-.+.+.+.. +.+++.+|.+   ....++-+...++.....+.
T Consensus       587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le  665 (769)
T PF05911_consen  587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK-LEELQSELESAKESNSLAETQLKAMKESYESLE  665 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444445555555555555555555556666666666666555555 5555544433   34455556666766777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005378          418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ  466 (699)
Q Consensus       418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLk  466 (699)
                      .|...+|.+...+..-+..++..|..++....++..+|..|+..+....
T Consensus       666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~  714 (769)
T PF05911_consen  666 TRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK  714 (769)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence            7877888888888888899999999999888888887777776665543

The function of this family is unknown.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.93  E-value=16  Score=44.26  Aligned_cols=80  Identities=10%  Similarity=0.248  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA  571 (699)
Q Consensus       492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~s  571 (699)
                      +.|..|+.+.+...+.+...|..+...+.+.+.++. .+.  + +...+...-++|.+.+++-|-+--..|.++..+...
T Consensus       635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~--~-~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~  710 (717)
T PF10168_consen  635 REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQK--S-PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN  710 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--c-ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577777776666555444444444444444433332 111  1 111123566788888888888877888888777766


Q ss_pred             HHHH
Q 005378          572 AEFQ  575 (699)
Q Consensus       572 L~~q  575 (699)
                      +...
T Consensus       711 i~~~  714 (717)
T PF10168_consen  711 IKKI  714 (717)
T ss_pred             HHHh
Confidence            5543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.83  E-value=0.87  Score=46.93  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN  379 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~  379 (699)
                      .+.++.+|+.+.+.|.+++..++..+..++.++..++.+
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555444443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.78  E-value=4.4  Score=44.30  Aligned_cols=19  Identities=11%  Similarity=0.200  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005378          427 AAEASMALARIQRIADERT  445 (699)
Q Consensus       427 naelseALa~lQrkL~EEk  445 (699)
                      .+++-..+..+++.+.+-+
T Consensus       248 k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      248 KSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            3333444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.71  E-value=13  Score=40.90  Aligned_cols=190  Identities=20%  Similarity=0.207  Sum_probs=96.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005378          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE----------LSVYKSEVTKVESNLAEALAAKNSEIET  347 (699)
Q Consensus       278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~E----------L~~eQ~er~q~es~~~eaLaak~sEi~e  347 (699)
                      .--|...++..+.++.+.=-+...+++++..|..+...+...          ....+..+.+.=.+.+++.-....++..
T Consensus        11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~   90 (319)
T PF09789_consen   11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE   90 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555445555555555544444411          0113344444444566666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh------------hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005378          348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNR------------ELTETRMIQALREELASVER---RAEEERAAHNAT  412 (699)
Q Consensus       348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~------------s~~Eke~lqSLE~eLkslQ~---aLe~E~~aHk~T  412 (699)
                      |..+|.+++.+++.++..+...+.....+-..+            +....+ +..++.+++++--   -+..|+..|+. 
T Consensus        91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q-~~qLe~d~qs~lDEkeEl~~ERD~yk~-  168 (319)
T PF09789_consen   91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ-IEQLERDLQSLLDEKEELVTERDAYKC-  168 (319)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            777777777777777777777665544433322            111122 2222222222211   11112222221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378          413 KMAAMEREVELEHRAAEASMALARIQRIA---DERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (699)
Q Consensus       413 k~ea~~Re~~LEeenaelseALa~lQrkL---~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r  478 (699)
                            .-   ..=|.+|.-.|..-.+++   +.=..+---|..++..++.+...+++-+..|+..+++
T Consensus       169 ------K~---~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  169 ------KA---HRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             ------HH---HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  11   112455555554433331   1111233356667777788888888888888888774

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=93.62  E-value=18  Score=42.16  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          509 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  573 (699)
Q Consensus       509 e~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~  573 (699)
                      +.+...++.++..+...+..+++.|+    .....||.||..|+|+|+.=+.+|..-..|+.+|.
T Consensus       454 E~ek~~l~eeL~~a~~~i~~LqDEL~----TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  454 EKEKESLEEELKEANQNISRLQDELE----TTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444566666666666777776653    34788999999999999999999999999998886

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.54  E-value=10  Score=38.96  Aligned_cols=78  Identities=17%  Similarity=0.273  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          493 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA  570 (699)
Q Consensus       493 ~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~  570 (699)
                      .++.++..++-..+.++.+...++.+-..|.......-.++-+-..-....|++++..|++.|..|..++..+..--+
T Consensus        97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n  174 (201)
T PF13851_consen   97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN  174 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334444444433333334444444444444433211111111112345788999999999999999999998877544

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.38  E-value=14  Score=40.28  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378          437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (699)
Q Consensus       437 lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q  480 (699)
                      +...|..=..+..+++.-+.-...-+.+.+++++.|-....+..
T Consensus       214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklE  257 (309)
T PF09728_consen  214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLE  257 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333355556666656566666777777777665555443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=93.38  E-value=20  Score=42.04  Aligned_cols=53  Identities=11%  Similarity=0.109  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          518 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA  571 (699)
Q Consensus       518 elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~s  571 (699)
                      ....+..++..+..+|++ .+.+-...+..+.+..+.+..=..+...|......
T Consensus       449 ~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~  501 (569)
T PRK04778        449 MFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATL  501 (569)
T ss_pred             HHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555554 22333333334444444444434444444443333

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=93.37  E-value=29  Score=43.79  Aligned_cols=29  Identities=10%  Similarity=0.165  Sum_probs=15.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          542 MELEKRYRELTDLLYYKQTQLETMASEKA  570 (699)
Q Consensus       542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~  570 (699)
                      ..++..+..+...+...+..+..+.....
T Consensus       825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  853 (1047)
T PRK10246        825 EQIQQELAQLAQQLRENTTRQGEIRQQLK  853 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666555555544444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.26  E-value=0.45  Score=48.01  Aligned_cols=96  Identities=21%  Similarity=0.334  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          491 IQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA  570 (699)
Q Consensus       491 i~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~  570 (699)
                      +..+.+|+..+...+..+..+|..+..+++.++.++......+..+ ......|+.++..|.+.|.+|+..++.|..|..
T Consensus        76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~  154 (194)
T PF08614_consen   76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQ  154 (194)
T ss_dssp             --------------------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666665555555555666677777777777766555444433 234678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005378          571 AAEFQLEKEMNRLQEVQ  587 (699)
Q Consensus       571 sL~~qLE~~~~~a~~~~  587 (699)
                      +|.+++-.++.+++..+
T Consensus       155 ~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen  155 ALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988887664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.04  E-value=20  Score=40.90  Aligned_cols=33  Identities=9%  Similarity=0.172  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          555 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  587 (699)
Q Consensus       555 L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~  587 (699)
                      +-.++.++..|..+....+...+.+..++.+.+
T Consensus       350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~  382 (498)
T TIGR03007       350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE  382 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777777777776654

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.04  E-value=30  Score=42.91  Aligned_cols=6  Identities=17%  Similarity=-0.119  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 005378          664 VHLFLM  669 (699)
Q Consensus       664 LHlWVm  669 (699)
                      .+||-|
T Consensus       775 ~~l~~~  780 (908)
T COG0419         775 EILSKL  780 (908)
T ss_pred             HHHHHH
Confidence            334433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.93  E-value=7.5  Score=38.64  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005378          439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEA  474 (699)
Q Consensus       439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~  474 (699)
                      .++.+.+.++..++.++..+..++..+.+.+++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  151 KELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555666666666665555555555544443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.80  E-value=6.8  Score=38.92  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378          285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL  320 (699)
Q Consensus       285 ~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL  320 (699)
                      +.+++....++++.+.+++.....+...+..++..+
T Consensus        83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~  118 (191)
T PF04156_consen   83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDL  118 (191)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.74  E-value=37  Score=43.28  Aligned_cols=13  Identities=8%  Similarity=0.337  Sum_probs=6.2

Q ss_pred             HHHHHHHHhhccc
Q 005378          666 LFLMYLLHRLQEQ  678 (699)
Q Consensus       666 lWVm~vL~~~~~~  678 (699)
                      +|+|++++++.+.
T Consensus       568 ~w~~~~~~~~~~~  580 (1109)
T PRK10929        568 LWVFMICATFARP  580 (1109)
T ss_pred             HHHHHHHHHHcCC
Confidence            4555554444433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.69  E-value=35  Score=42.88  Aligned_cols=54  Identities=13%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378          333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (699)
Q Consensus       333 ~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke  386 (699)
                      .+...+++.++++..++.+++.-+.++...+....+...+...+...+...++.
T Consensus       231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~  284 (1141)
T KOG0018|consen  231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEK  284 (1141)
T ss_pred             hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777877777777777777766666666666666666555554

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.35  E-value=4.8  Score=38.31  Aligned_cols=93  Identities=17%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378          302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE  381 (699)
Q Consensus       302 lqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s  381 (699)
                      ++..++.++.++..++.++.++...+..+..++. .|...+.+......+       +..++..+..++..-..+.+-+.
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv-~l~~~~e~~~~~~~~-------~~~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAERDELREEIV-KLMEENEELRALKKE-------VEELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444455555555555555555555555544333 111222222222222       22223333333333333444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 005378          382 LTETRMIQALREELASVERRAE  403 (699)
Q Consensus       382 ~~Eke~lqSLE~eLkslQ~aLe  403 (699)
                      ++..+ ...|+.++.+++.-|.
T Consensus        93 EK~E~-veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   93 EKSEE-VEELRADVQDLKEMYR  113 (120)
T ss_pred             chHHH-HHHHHHHHHHHHHHHH
Confidence            44444 5556666666655553

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.33  E-value=4.5  Score=39.08  Aligned_cols=80  Identities=29%  Similarity=0.343  Sum_probs=44.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005378          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (699)
Q Consensus       273 qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL  352 (699)
                      +|.....+|+..++++..+.+.++...+.++..+..+...+.....++.+++....+....+.-.+-.++-++..|+.+|
T Consensus        70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44445556666666666666666665555555555555555555555555555555555545444444444555554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.05  E-value=34  Score=41.26  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005378          422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVEC  462 (699)
Q Consensus       422 ~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl  462 (699)
                      ..+.+.+.|++....++..+.+.......+..|+...+..+
T Consensus       511 qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l  551 (739)
T PF07111_consen  511 QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL  551 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            45667777777777777777777776667766666555444

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.04  E-value=2.6  Score=43.47  Aligned_cols=44  Identities=14%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR  401 (699)
Q Consensus       357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a  401 (699)
                      +.+...+....++..++++|.+.+....++ +..++.++.+++..
T Consensus       125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~-~~~l~~~~~~~~~~  168 (206)
T PRK10884        125 QKVAQSDSVINGLKEENQKLKNQLIVAQKK-VDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            334444444555566666665555555444 44444445544443

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=91.99  E-value=18  Score=37.89  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          419 REVELEHRAAEASMALARIQRIADERTA  446 (699)
Q Consensus       419 Re~~LEeenaelseALa~lQrkL~EEk~  446 (699)
                      |...++.-+..+..-|..|...++.++.
T Consensus       115 r~~~ie~~~~~l~~~l~~l~~~~~~Er~  142 (247)
T PF06705_consen  115 RPQDIEELNQELVRELNELQEAFENERN  142 (247)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555553

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.64  E-value=10  Score=35.52  Aligned_cols=54  Identities=15%  Similarity=0.186  Sum_probs=37.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE  331 (699)
Q Consensus       278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~e  331 (699)
                      -...+-.+.+|.+++.+|+..+..++.-..+...++..||+.+......+...+
T Consensus        25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK   78 (107)
T PF09304_consen   25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK   78 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677777777777777777777777777777777777777666666543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=91.39  E-value=19  Score=37.13  Aligned_cols=32  Identities=22%  Similarity=0.149  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378          289 KSENAQLEELLVAERELSRSYEARIKQLEQEL  320 (699)
Q Consensus       289 kke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL  320 (699)
                      ......|++.+...++++..+..++..+.+.-
T Consensus        10 nrri~~leeele~aqErl~~a~~KL~Eaeq~~   41 (205)
T KOG1003|consen   10 NRRIQLLEEELDRAQERLATALQKLEEAEQAA   41 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33344444444444444444444444444333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.13  E-value=14  Score=35.24  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN  365 (699)
Q Consensus       286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~r  365 (699)
                      ..|+....++|..+..+++.+..|......+..++-.+-......+. ....+.....++.+|+.|.+.+=+-+..-.+.
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~   97 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEE   97 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            44555666666666666666666666666666666665555555543 44455566666666666666666666666666


Q ss_pred             HHHHHHHHHHHhH
Q 005378          366 LASLQMNMESIMR  378 (699)
Q Consensus       366 Leelq~E~~~L~e  378 (699)
                      .++++.+..-++.
T Consensus        98 veEL~~Dv~DlK~  110 (120)
T PF12325_consen   98 VEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666555443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PLN03188 kinesin-12 family protein; Provisional

Probab=91.12  E-value=56  Score=41.96  Aligned_cols=141  Identities=21%  Similarity=0.198  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhhccCChh------------HHHHHHHHHHH
Q 005378          436 RIQRIADERTAKAGELEQKVAM-------LEVECATLQQELQDMEARLKRGQKKSPE------------EANQAIQAWQD  496 (699)
Q Consensus       436 ~lQrkL~EEk~ra~eLeqQ~sm-------Le~dl~qLkQeLqd~e~~~~r~qqk~~~------------~~~qei~~lee  496 (699)
                      .++..|.-+|..+.+|..-+.|       +=..|..|+.++.++-.+.+++++....            --..=+++|-.
T Consensus      1083 kl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaa 1162 (1320)
T PLN03188       1083 KQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAA 1162 (1320)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            4555677777777777765555       3345677777888888888887753211            01113466777


Q ss_pred             HHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          497 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY--SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF  574 (699)
Q Consensus       497 El~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~--~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~  574 (699)
                      |+..+|.          ..|.|-..|+.+-+.||-||-..  -.+..++|=-||++--+-+.--|.+.-.+..|..-+-.
T Consensus      1163 e~s~l~~----------ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188       1163 EISALKV----------EREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred             HHHHHHH----------HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776665          44677778888877777666522  23457889999999999998888888889999999999


Q ss_pred             HHHHHHHHHHHH
Q 005378          575 QLEKEMNRLQEV  586 (699)
Q Consensus       575 qLE~~~~~a~~~  586 (699)
                      |++++..+++.+
T Consensus      1233 ~~~klkrkh~~e 1244 (1320)
T PLN03188       1233 QIDKLKRKHENE 1244 (1320)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888655

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.91  E-value=44  Score=40.32  Aligned_cols=64  Identities=23%  Similarity=0.063  Sum_probs=41.3

Q ss_pred             HhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005378          237 QQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV  300 (699)
Q Consensus       237 ~~~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~  300 (699)
                      ++-.|++.++..++.+..--+..++.--..++-.+.++.+-++++++......-..+++++...
T Consensus       158 ~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~  221 (716)
T KOG4593|consen  158 TLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERAD  221 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666666555556666777777777777777766666666666544

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=90.87  E-value=60  Score=41.84  Aligned_cols=58  Identities=9%  Similarity=-0.030  Sum_probs=35.6

Q ss_pred             hhhhHhHhHHhhcchhHHHHH-HHHHHHHHHHHHHHHHhhccchh---hhhhHHHHHhhccc
Q 005378          637 DSGAVRATRFLWRYPIARIIL-LFYLVFVHLFLMYLLHRLQEQAD---NFAAREVAESMGLT  694 (699)
Q Consensus       637 Ds~slr~g~fLRRyP~aRl~~-l~Y~vlLHlWVm~vL~~~~~~~~---~~~~~~~~~~~~~~  694 (699)
                      +.|+.--|++=+-=|+.++=- .+--++-||-=+|=+.+++.--.   -+|++-..+.+|.+
T Consensus      1202 Etf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~ 1263 (1294)
T KOG0962|consen 1202 ETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRS 1263 (1294)
T ss_pred             HHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhc
Confidence            677777888888888887632 33344555555666666554422   23666666666655

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=90.87  E-value=14  Score=34.65  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA  430 (699)
Q Consensus       390 SLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenael  430 (699)
                      .|+..+.++...++.++    ..++++..|+.+-+..++.+
T Consensus        62 eLqaki~ea~~~le~eK----~ak~~l~~r~~k~~~dka~l   98 (107)
T PF09304_consen   62 ELQAKIDEARRNLEDEK----QAKLELESRLLKAQKDKAIL   98 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHH
Confidence            33333444444444332    23444444555555544333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=90.82  E-value=44  Score=40.25  Aligned_cols=74  Identities=18%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhhhcch------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSR------------------------EEHMELEKRYRELTDLLYYKQTQLETM  565 (699)
Q Consensus       510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~------------------------~~~~ele~rl~eLte~L~eKQ~qlE~L  565 (699)
                      ..+..++.....||+++..++..+.+-..                        ..-.-|+..++.|+-++..|..-++.|
T Consensus       534 kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeL  613 (786)
T PF05483_consen  534 KQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEEL  613 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            44556677777777776666644442100                        012345556777777778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 005378          566 ASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       566 ~~Er~sL~~qLE~~~~~a  583 (699)
                      ..++.+|.-++-...++.
T Consensus       614 qqeNk~LKKk~~aE~kq~  631 (786)
T PF05483_consen  614 QQENKALKKKITAESKQS  631 (786)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888887776655443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.79  E-value=51  Score=40.90  Aligned_cols=14  Identities=14%  Similarity=0.306  Sum_probs=6.3

Q ss_pred             chhhhhHHHHHHHH
Q 005378          247 TKEQDQLDEAQGLL  260 (699)
Q Consensus       247 ~~lqkQLeE~n~~L  260 (699)
                      ..++.++..++..+
T Consensus       325 ~~~~~~~~~~~~~~  338 (908)
T COG0419         325 KSLEERLEKLEEKL  338 (908)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444444

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=90.03  E-value=64  Score=40.84  Aligned_cols=10  Identities=30%  Similarity=0.395  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 005378          463 ATLQQELQDM  472 (699)
Q Consensus       463 ~qLkQeLqd~  472 (699)
                      ..+++++..|
T Consensus       780 ~~l~~~i~~~  789 (1047)
T PRK10246        780 TQLEQLKQNL  789 (1047)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=90.01  E-value=34  Score=37.57  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          556 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA  590 (699)
Q Consensus       556 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~~~  590 (699)
                      -.+..+++.|..|....+..++.+..++++...++
T Consensus       274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~  308 (362)
T TIGR01010       274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA  308 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777888888888888888888877776544

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.74  E-value=29  Score=36.40  Aligned_cols=21  Identities=14%  Similarity=0.272  Sum_probs=8.4

Q ss_pred             HhhhhhHHHHHHHHHHHHHHH
Q 005378          278 CAGLSSRLQEYKSENAQLEEL  298 (699)
Q Consensus       278 ~aRLrK~~~ELkke~aqLEe~  298 (699)
                      .++.++.+..+..+...+...
T Consensus        37 ~~~sQ~~id~~~~e~~~L~~e   57 (251)
T PF11932_consen   37 AQQSQKRIDQWDDEKQELLAE   57 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.21  E-value=51  Score=38.55  Aligned_cols=133  Identities=15%  Similarity=0.150  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH
Q 005378          308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM  387 (699)
Q Consensus       308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~  387 (699)
                      .|+.++..+..+...++.+....+.+..-=-...+..-.++..++.-++..+.+..+.|+....++.+.+++.+.+..+ 
T Consensus       163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq-  241 (596)
T KOG4360|consen  163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ-  241 (596)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4555666666666666665555433211111123333447778888888888888888899999999999998888888 


Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          388 IQALREELASVERRAE---EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIA  441 (699)
Q Consensus       388 lqSLE~eLkslQ~aLe---~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL  441 (699)
                      +..++++++.+-..-+   .-+.+++..+.+..+-+.++|...++...-+.+.|..|
T Consensus       242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL  298 (596)
T KOG4360|consen  242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL  298 (596)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766655433221   12333344444444455555555544443333333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.19  E-value=39  Score=37.16  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          307 RSYEARIKQLEQELSVYKSEVTKVES  332 (699)
Q Consensus       307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es  332 (699)
                      ..|+.++..|+.+...++.+..++..
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~  188 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQLKT  188 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            46666777777777777777777654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=89.14  E-value=65  Score=39.64  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378          352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (699)
Q Consensus       352 L~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe  403 (699)
                      |+.-...+..+...-+.+..+..-|+.++...+|+ ..+|.+++..++--|+
T Consensus       115 l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eke-n~~Lkye~~~~~kele  165 (769)
T PF05911_consen  115 LQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKE-NSSLKYELHVLSKELE  165 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            33333334444444444444445555555555555 5555555555554443

The function of this family is unknown.

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=89.07  E-value=48  Score=38.09  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 005378          514 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL---------ETMASEKAAAEFQLEKEMNRLQ  584 (699)
Q Consensus       514 ~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~ql---------E~L~~Er~sL~~qLE~~~~~a~  584 (699)
                      .++.++..++.++..++..+. |.++.-..++.||..|..++..-...+         -....|-..|..+.+-+...+.
T Consensus       290 ~Le~qLa~~~aeL~~L~~~~~-p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~  368 (434)
T PRK15178        290 GFETQLAEAKAEYAQLMVNGL-DQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWE  368 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555554443222 112234555666666666555443333         2345566667777777776666


Q ss_pred             HHHHHHhhhh
Q 005378          585 EVQSEAERSR  594 (699)
Q Consensus       585 ~~~~~~~~sr  594 (699)
                      .+.+..+.+|
T Consensus       369 sAlaaLE~AR  378 (434)
T PRK15178        369 SALQTLQQGK  378 (434)
T ss_pred             HHHHHHHHHH
Confidence            6655555544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.86  E-value=25  Score=34.49  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (699)
Q Consensus       347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke  386 (699)
                      .|+.++..|+.++..+......+..+....+..+..+..+
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e   60 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE   60 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=88.83  E-value=30  Score=35.43  Aligned_cols=65  Identities=18%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378          337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (699)
Q Consensus       337 aLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL  402 (699)
                      .|+.|..-++.|+..+.+++.-+......|...+........-......+ +..|..-|+.++..+
T Consensus        61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl  125 (188)
T PF05335_consen   61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANL  125 (188)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555544444444 455555555555444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.55  E-value=20  Score=34.58  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          390 ALREELASVERRAEEERAAHNATKM  414 (699)
Q Consensus       390 SLE~eLkslQ~aLe~E~~aHk~Tk~  414 (699)
                      .++..+++++..+..+.....-++.
T Consensus        98 ~l~~~~~~~~~~~k~~kee~~klk~  122 (151)
T PF11559_consen   98 QLQKQLKSLEAKLKQEKEELQKLKN  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455555555555554444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.38  E-value=18  Score=40.37  Aligned_cols=52  Identities=12%  Similarity=0.216  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA  337 (699)
Q Consensus       286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~ea  337 (699)
                      .+++....|.-................+..|+.++...-......+.-+..+
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~q  267 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQ  267 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555554444444445555555555555555444444444433333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.21  E-value=8.6  Score=45.38  Aligned_cols=87  Identities=21%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005378          282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL  361 (699)
Q Consensus       282 rK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r  361 (699)
                      .+.+..+......|++.+++|+..+..++..+..|..+|++.+.+....        ..++-++..+..+|..|+..|..
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~--------~~~~rei~~~~~~I~~L~~~L~e  492 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK--------VRKDREIRARDRRIERLEKELEE  492 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444333311        11444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 005378          362 SEGNLASLQMNMESI  376 (699)
Q Consensus       362 ~k~rLeelq~E~~~L  376 (699)
                      .+.+.+.+...+..+
T Consensus       493 ~~~~ve~L~~~l~~l  507 (652)
T COG2433         493 KKKRVEELERKLAEL  507 (652)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555554444444333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=88.17  E-value=44  Score=36.53  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=20.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (699)
Q Consensus       280 RLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~  322 (699)
                      .|++...++...+--+-..++.++++-+.|..++..+-.....
T Consensus        17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~e   59 (294)
T COG1340          17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQE   59 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555444444444444445555544444433333

>PLN02939 transferase, transferring glycosyl groups

Probab=88.08  E-value=84  Score=39.64  Aligned_cols=165  Identities=16%  Similarity=0.228  Sum_probs=82.6

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005378          388 IQALREE---LASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT  464 (699)
Q Consensus       388 lqSLE~e---LkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~q  464 (699)
                      +..++++   |+.--+.+..+..+...|..    |...+|.++.-|..++.+++.++..-..-+..|    +-|+.++  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--  297 (977)
T PLN02939        228 LDVLKEENMLLKDDIQFLKAELIEVAETEE----RVFKLEKERSLLDASLRELESKFIVAQEDVSKL----SPLQYDC--  297 (977)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cchhHHH--
Confidence            6666655   44444445555666666666    899999999999999999999997665433332    2344443  


Q ss_pred             HHHHHHHHHHHHHhhccCChh--HHHHHHHHHHHHHHHHHHhHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhh
Q 005378          465 LQQELQDMEARLKRGQKKSPE--EANQAIQAWQDEVERARQGQRDAE-NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEH  541 (699)
Q Consensus       465 LkQeLqd~e~~~~r~qqk~~~--~~~qei~~leeEl~r~r~~~~~le-~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~  541 (699)
                      +-.+.+.++.-+.+....+-.  ...++..-|...+..+...+..+- -+++  -..+..|+..++.+...+    ....
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~  371 (977)
T PLN02939        298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS--SYKVELLQQKLKLLEERL----QASD  371 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhh--HHHHHHHHHHHHHHHHHH----HhhH
Confidence            333333333333332211111  011111233333443433332111 1111  112233334444444332    2234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          542 MELEKRYRELTDLLYYKQTQLETMASE  568 (699)
Q Consensus       542 ~ele~rl~eLte~L~eKQ~qlE~L~~E  568 (699)
                      .++..+++--.+.+.+=|..+..|..|
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (977)
T PLN02939        372 HEIHSYIQLYQESIKEFQDTLSKLKEE  398 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            556666666666666666666666654

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.96  E-value=36  Score=35.32  Aligned_cols=40  Identities=28%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378          433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM  472 (699)
Q Consensus       433 ALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~  472 (699)
                      .+..|+..|+..++.+.-|+.++..++.++..|+..+...
T Consensus        67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            3456777888888888999999999999999999988765

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=87.77  E-value=55  Score=37.17  Aligned_cols=86  Identities=23%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHH-HHHHHHHHHHHHhH---------------H--H
Q 005378          448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS--PEEANQAI-QAWQDEVERARQGQ---------------R--D  507 (699)
Q Consensus       448 a~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~--~~~~~qei-~~leeEl~r~r~~~---------------~--~  507 (699)
                      ...|..|.+-...+-.-|-|.++.-..-+++-+...  ..-.||++ ..|-+||.++|-.+               .  .
T Consensus       430 LeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayE  509 (593)
T KOG4807|consen  430 LEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYE  509 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhh
Confidence            334444444433333444444433333333333221  22245544 56777787776431               1  1


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhh
Q 005378          508 AENKLSSLEAEVQKMRVEMAAMKRDA  533 (699)
Q Consensus       508 le~~l~~lE~elqkLr~e~~~lq~ql  533 (699)
                      ++-=|.-.|.+|+.|+.++..+++-|
T Consensus       510 LEVLLRVKEsEiQYLKqEissLkDEL  535 (593)
T KOG4807|consen  510 LEVLLRVKESEIQYLKQEISSLKDEL  535 (593)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            22334567888888888887777544

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.63  E-value=66  Score=37.95  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Q 005378          317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELA  396 (699)
Q Consensus       317 Q~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLk  396 (699)
                      |+-++.+...+..-+.+..+.+....-++.+|...++.++..+......+-.+++++.+|.--.        -.+..+|+
T Consensus       312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~g--------lk~ds~Lk  383 (654)
T KOG4809|consen  312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG--------LKRDSKLK  383 (654)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhhhh
Confidence            4566666666666666667777777778888888888877777777666666666666654433        33445577


Q ss_pred             HHHHHHHHHHHHHHH
Q 005378          397 SVERRAEEERAAHNA  411 (699)
Q Consensus       397 slQ~aLe~E~~aHk~  411 (699)
                      +++-+|++......-
T Consensus       384 ~leIalEqkkEec~k  398 (654)
T KOG4809|consen  384 SLEIALEQKKEECSK  398 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777765554433

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=87.55  E-value=75  Score=38.50  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=13.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          341 KNSEIETLVSSIDALKKQAALSEGNLASLQ  370 (699)
Q Consensus       341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq  370 (699)
                      |+.+...|-..++.|+.+=..+...++-++
T Consensus       240 we~Er~~L~~tVq~L~edR~~L~~T~ELLq  269 (739)
T PF07111_consen  240 WEPEREELLETVQHLQEDRDALQATAELLQ  269 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555444333333333333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=87.47  E-value=57  Score=37.04  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHH
Q 005378          308 SYEARIKQLEQELSVYKSEVTKVES-NLAEALAAKNSEIETLV  349 (699)
Q Consensus       308 ~Lq~kl~qLQ~EL~~eQ~er~q~es-~~~eaLaak~sEi~eLe  349 (699)
                      ..+.++..||....++-..+.+.++ .+.+..++--+-|+.|+
T Consensus       349 tHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMK  391 (593)
T KOG4807|consen  349 THQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMK  391 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence            3344667776665554444444444 23333333334444444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.18  E-value=42  Score=36.43  Aligned_cols=58  Identities=29%  Similarity=0.326  Sum_probs=47.3

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005378          537 SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR  594 (699)
Q Consensus       537 ~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~~~~~sr  594 (699)
                      ....+..|++.-.-|+-.|.-|..++--|..-.++-..++++++..+.....+++++.
T Consensus        72 l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ  129 (307)
T PF10481_consen   72 LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ  129 (307)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455778888888899999999999999999999999999988877777767777655

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.18  E-value=8.2  Score=42.18  Aligned_cols=118  Identities=23%  Similarity=0.334  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 005378          458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS  537 (699)
Q Consensus       458 Le~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~  537 (699)
                      |+..+..+..+...|..-+........  ....+..+..|+..+......+..+|..++.+...+..++..++......-
T Consensus        14 l~~~~~~~~~E~~~Y~~fL~~l~~~~~--~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   14 LDKQLEQAEKERDTYQEFLKKLEEESD--SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD   91 (314)
T ss_dssp             ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443331111  111234444455444444444445555666666666666655554322211


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          538 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  585 (699)
Q Consensus       538 ~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~  585 (699)
                       ..+..|-..++.+.-++.+       +..|+.++..|++.+...++.
T Consensus        92 -~eE~~~~~~~n~~~~~l~~-------~~~e~~sl~~q~~~~~~~L~~  131 (314)
T PF04111_consen   92 -EEEEEYWREYNELQLELIE-------FQEERDSLKNQYEYASNQLDR  131 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence             1122344444444444444       444555555555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.14  E-value=25  Score=37.99  Aligned_cols=75  Identities=12%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378          391 LREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL  469 (699)
Q Consensus       391 LE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL  469 (699)
                      .++.|.+++.+|...+..+..-+.    ..+.|..+|+.|.+...++++.-+-=.-.+.-.+.++..|+-.+...+..+
T Consensus        37 rQfQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqi  111 (307)
T PF10481_consen   37 RQFQLESLEAALQKQKQKVEEEKN----EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQI  111 (307)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            446677777777776666666655    456677788888887777776544433344444444444444444444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.99  E-value=80  Score=38.21  Aligned_cols=19  Identities=26%  Similarity=0.298  Sum_probs=11.9

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 005378          541 HMELEKRYRELTDLLYYKQ  559 (699)
Q Consensus       541 ~~ele~rl~eLte~L~eKQ  559 (699)
                      .++.++++++|-+.|...+
T Consensus       379 ite~~tklk~l~etl~~~~  397 (716)
T KOG4593|consen  379 ITEEETKLKELHETLARRL  397 (716)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence            4666777777776654443

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=86.87  E-value=42  Score=34.89  Aligned_cols=86  Identities=20%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHhHhhhh
Q 005378          312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQ--------MNMESIMRNREL  382 (699)
Q Consensus       312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq--------~E~~~L~e~~s~  382 (699)
                      ++.+||.+|..+|......+.               |+.|| ..|+++|+.++.+-....        .....|++.+.+
T Consensus         4 kv~~LQ~AL~~LQaa~ekRE~---------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrE   68 (205)
T PF12240_consen    4 KVERLQQALAQLQAACEKREQ---------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLRE   68 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHH
Confidence            567777777777777666543               22333 445566655553322111        235567778888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          383 TETRMIQALREELASVERRAEEERAAHNATKM  414 (699)
Q Consensus       383 ~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~  414 (699)
                      .+.+ +=+|+.++--.++.| +|...-++..+
T Consensus        69 kEEr-ILaLEad~~kWEqkY-LEEs~mrq~a~   98 (205)
T PF12240_consen   69 KEER-ILALEADMTKWEQKY-LEESAMRQFAM   98 (205)
T ss_pred             HHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            8888 667888888888888 55444444433

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.81  E-value=85  Score=38.34  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=10.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          305 LSRSYEARIKQLEQELSVYKSEVTKV  330 (699)
Q Consensus       305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~  330 (699)
                      +...|...+.+.-.+|..++.++...
T Consensus       566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l  591 (717)
T PF10168_consen  566 RVKLLKQQKEQQLKELQELQEERKSL  591 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=86.64  E-value=50  Score=35.52  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          350 SSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERAAHNAT  412 (699)
Q Consensus       350 ~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~----~Eke~lqSLE~eLkslQ~aLe~E~~aHk~T  412 (699)
                      ..+..|++++..+..++.+.+.+..-|..=-.-    ..=+ +++|...|..+.-.-..|..+-+.+
T Consensus        81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdEldel~e~  146 (258)
T PF15397_consen   81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDELDELNEM  146 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554443321111    1223 5555555555555555555554444

>PLN02939 transferase, transferring glycosyl groups

Probab=86.62  E-value=1e+02  Score=38.99  Aligned_cols=105  Identities=18%  Similarity=0.172  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHH
Q 005378          286 QEYKSENAQLEELLVAERELSR---SYEARIKQLEQELSVYKSEVTKVESN-------LAEALAAKNSEIETLVSSIDAL  355 (699)
Q Consensus       286 ~ELkke~aqLEe~l~elqek~~---~Lq~kl~qLQ~EL~~eQ~er~q~es~-------~~eaLaak~sEi~eLe~RL~~L  355 (699)
                      +.|+.+..-||..+.+..++..   .-.....-|+.+|+.++.++.+....       +...+.....+.-.|+..|+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (977)
T PLN02939        166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL  245 (977)
T ss_pred             HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence            3445555555554444322221   11113444556666666666554332       4556666666666777777776


Q ss_pred             HHHHHH---HHHHHHHHHHHHHHHhHhhhhhHHHHHHH
Q 005378          356 KKQAAL---SEGNLASLQMNMESIMRNRELTETRMIQA  390 (699)
Q Consensus       356 eqeL~r---~k~rLeelq~E~~~L~e~~s~~Eke~lqS  390 (699)
                      ..++..   ..+++-.++-|..-|...+.++|...+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (977)
T PLN02939        246 KAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA  283 (977)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            666443   33445555555555555555555553333

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=86.41  E-value=68  Score=36.83  Aligned_cols=67  Identities=21%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             hhHHHhhhhcCCCCchhhhhHHHHHHHHHhh----hhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005378          233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELL  299 (699)
Q Consensus       233 ~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE----~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l  299 (699)
                      -+.+.|+..|.+.+.--++-=.|+-+++--|    ++.++++..+|..-...||.-++.++.....|+...
T Consensus       264 Eq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~  334 (502)
T KOG0982|consen  264 EQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED  334 (502)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5667777888888877777777777777655    566777777777777777777777666666555543

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=86.38  E-value=73  Score=37.13  Aligned_cols=85  Identities=14%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378          388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ  467 (699)
Q Consensus       388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ  467 (699)
                      +..++.++..++.+++.++..|..       +...++.....|.....++-.++=+++.+--. ++.-..++.-+.-++.
T Consensus        76 ~~~~~~~~~~l~~~le~~~~~~~e-------k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~~l~~ll~Pl~e  147 (475)
T PRK10361         76 NTSLEADLREVTTRMEAAQQHADD-------KIRQMINSEQRLSEQFENLANRIFEHSNRRVD-EQNRQSLNSLLSPLRE  147 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHH
Confidence            344444455555555555544422       33445555555566565555555555533222 2333446777788888


Q ss_pred             HHHHHHHHHHhhc
Q 005378          468 ELQDMEARLKRGQ  480 (699)
Q Consensus       468 eLqd~e~~~~r~q  480 (699)
                      .|..++.+.....
T Consensus       148 ~l~~f~~~v~~~~  160 (475)
T PRK10361        148 QLDGFRRQVQDSF  160 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887777554

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.26  E-value=27  Score=39.12  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH
Q 005378          343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM  387 (699)
Q Consensus       343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~  387 (699)
                      .-++.+..-.......+...+..|.++..+.....+++...|+.+
T Consensus       220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i  264 (359)
T PF10498_consen  220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI  264 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555567777777778888888888887777773

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=86.24  E-value=29  Score=38.00  Aligned_cols=57  Identities=23%  Similarity=0.207  Sum_probs=37.9

Q ss_pred             cCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          242 ADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE  304 (699)
Q Consensus       242 ~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe  304 (699)
                      |-++....-+.|++++.+|+.=+..      +|..+.+++.+.+.+.++.++.++..+..++.
T Consensus        46 Ar~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~  102 (301)
T PF06120_consen   46 ARQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQKKIDSLKD  102 (301)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777889999888877653      66666777777777666666666664444333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=85.95  E-value=80  Score=37.21  Aligned_cols=252  Identities=18%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005378          279 AGLSSRLQEYKSENAQLEELLV-----AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID  353 (699)
Q Consensus       279 aRLrK~~~ELkke~aqLEe~l~-----elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~  353 (699)
                      ..|+++.+.|+-+......++.     ++.+.+..++.++..+=.-|+.+=+.+...+.                  .+.
T Consensus       251 ~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~------------------~~~  312 (570)
T COG4477         251 VNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEE------------------NLP  312 (570)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCc


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR---EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA  430 (699)
Q Consensus       354 ~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE---~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenael  430 (699)
                      -+-.-+...+.....+.++..++.+.--..+.+ +...+   .+|+++...+..-...-..-..    +.+.++..-..+
T Consensus       313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e-~~~vr~~e~eL~el~~~~~~i~~~~~~~~~----~yS~lq~~l~~~  387 (570)
T COG4477         313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETE-LGSVRKFEKELKELESVLDEILENIEAQEV----AYSELQDNLEEI  387 (570)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-ccCChh-------HHHHHHHHHHHHHHHHH
Q 005378          431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPE-------EANQAIQAWQDEVERAR  502 (699)
Q Consensus       431 seALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~-qqk~~~-------~~~qei~~leeEl~r~r  502 (699)
                      .++|+.++.+-..=...+..|++-=.....++..++.+|....+...+. ....|.       .+...++.+-.++.+..
T Consensus       388 ~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~p  467 (570)
T COG4477         388 EKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVP  467 (570)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcC


Q ss_pred             HhHHHHHHhhhhHHHHHHHHHHHHHHHH------HhhhhcchhhhhHHHHHHHHHHHHHHH
Q 005378          503 QGQRDAENKLSSLEAEVQKMRVEMAAMK------RDAEHYSREEHMELEKRYRELTDLLYY  557 (699)
Q Consensus       503 ~~~~~le~~l~~lE~elqkLr~e~~~lq------~qleq~~~~~~~ele~rl~eLte~L~e  557 (699)
                      =..+..-..+...+..+..+..+..++-      .++=||    ..-|.++...+.+.|-+
T Consensus       468 inm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY----~NRYRs~~~~v~~~l~e  524 (570)
T COG4477         468 INMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQY----GNRYRSRNAEVAKSLNE  524 (570)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHH

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=85.89  E-value=8  Score=32.82  Aligned_cols=60  Identities=27%  Similarity=0.366  Sum_probs=47.3

Q ss_pred             HHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005378          255 EAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS  325 (699)
Q Consensus       255 E~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~  325 (699)
                      +++.-|.+|+-+           ..-|.+.+...+..+-..+..|.+...+.+.|..++..|..+++.+|+
T Consensus         1 elQsaL~~Eira-----------kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    1 ELQSALEAEIRA-----------KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            355567777774           777778888888888888988888888888888888888888877664

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.85  E-value=24  Score=41.93  Aligned_cols=93  Identities=20%  Similarity=0.313  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA  430 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenael  430 (699)
                      .+......+......+++++.+++.|...+..+.+. +..|+.+|..+...+..+...-+..+               .+
T Consensus       416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e-ie~L~~~l~~~~r~~~~~~~~~rei~---------------~~  479 (652)
T COG2433         416 EITVYEKRIKKLEETVERLEEENSELKRELEELKRE-IEKLESELERFRREVRDKVRKDREIR---------------AR  479 (652)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHH---------------HH
Confidence            333444445555555555666666666666555555 67777777777766654332211111               12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005378          431 SMALARIQRIADERTAKAGELEQKVAMLE  459 (699)
Q Consensus       431 seALa~lQrkL~EEk~ra~eLeqQ~smLe  459 (699)
                      ..-+..++++|.+++.++.+|+.++..+.
T Consensus       480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         480 DRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566888899999999988888766554

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=85.47  E-value=93  Score=38.19  Aligned_cols=44  Identities=32%  Similarity=0.387  Sum_probs=32.9

Q ss_pred             HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005378           15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH   58 (699)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~q~k~~~~~~~~~~~~   58 (699)
                      .||=|-|.-.=|--|.+.+-.    +-+|+..=.+|+-.+||||-+++
T Consensus        12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh   59 (861)
T PF15254_consen   12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH   59 (861)
T ss_pred             hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence            588888888878777774322    24677777788888999999888

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=85.33  E-value=99  Score=37.72  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q 005378          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR  392 (699)
Q Consensus       353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE  392 (699)
                      +.++..|.+-...+-...+-+.+|++.++..|.+.-++++
T Consensus        94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r  133 (916)
T KOG0249|consen   94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR  133 (916)
T ss_pred             HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence            3333444444444444444445555555544444333333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=85.06  E-value=44  Score=33.43  Aligned_cols=120  Identities=16%  Similarity=0.160  Sum_probs=76.2

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005378          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS-----VYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (699)
Q Consensus       278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~-----~eQ~er~q~es~~~eaLaak~sEi~eLe~RL  352 (699)
                      +.+|++.+.+++.+..+.=..+..+....+....++......+.     ..+..+....+ +.-.|..+..+-..|..|.
T Consensus        29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rR  107 (159)
T PF05384_consen   29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERR  107 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555556666666666666652     34555666654 6667777777777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE  399 (699)
Q Consensus       353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ  399 (699)
                      +.|+..+..++..+++++.-..++---++-+... +..+-..|.+++
T Consensus       108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~d-l~~v~~~~e~~~  153 (159)
T PF05384_consen  108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGD-LQQVSEQIEDAQ  153 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence            8888888888888877777777766666555555 444444444444

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=84.80  E-value=88  Score=36.71  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=58.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Q 005378          274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA-KNSEIETLVSSI  352 (699)
Q Consensus       274 La~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaa-k~sEi~eLe~RL  352 (699)
                      .+++.+++-+--.|+++..-..|..      .|..|+.....|+.-+......+-..+..+++.+.. |..-..-.+.++
T Consensus       169 ~arm~aqi~~l~eEmS~r~l~reak------l~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l  242 (531)
T PF15450_consen  169 VARMQAQITKLGEEMSLRFLKREAK------LCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERL  242 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555544444442      455777777777777777666666666655544332 233233333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (699)
Q Consensus       353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~  404 (699)
                      .++....+-   -+...+.+...+.+...-+-. ++..|+.-+...+..|+.
T Consensus       243 ~al~gq~ev---~~~~~~~E~~~l~eq~~~ld~-AV~~Ltk~v~~~q~sL~k  290 (531)
T PF15450_consen  243 RALQGQQEV---GLGGIQSEESKLLEQCRKLDE-AVAQLTKFVQQNQKSLNK  290 (531)
T ss_pred             HHHHhhHhh---hhhhhhHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            444433331   111223333334333322222 244455445555555554

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=84.41  E-value=94  Score=36.68  Aligned_cols=84  Identities=14%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhH--HHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          491 IQAWQDEVERARQGQ--RDAE-NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS  567 (699)
Q Consensus       491 i~~leeEl~r~r~~~--~~le-~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~  567 (699)
                      ...+..|+.+++..-  ..-+ .....++.++..+.+....+...+.... .+-+.+...+.++.+.|.+=..+...+..
T Consensus       322 ~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~-~~yS~i~~~l~~~~~~l~~ie~~q~~~~~  400 (560)
T PF06160_consen  322 NKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQ-VPYSEIQEELEEIEEQLEEIEEEQEEINE  400 (560)
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666665431  1111 2334566666666666655555444211 11234444555555555554444444444


Q ss_pred             HHHHHHHH
Q 005378          568 EKAAAEFQ  575 (699)
Q Consensus       568 Er~sL~~q  575 (699)
                      ....|...
T Consensus       401 ~l~~L~~d  408 (560)
T PF06160_consen  401 SLQSLRKD  408 (560)
T ss_pred             HHHHHHHH
Confidence            44444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=84.22  E-value=94  Score=36.52  Aligned_cols=92  Identities=13%  Similarity=0.137  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHH
Q 005378          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS-S--------------IDALKKQAALSEGNLASLQ  370 (699)
Q Consensus       306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~-R--------------L~~LeqeL~r~k~rLeelq  370 (699)
                      +..+...+++|..-....++++...+..+..+|+.+...+....- |              =+.++.++.++-.++.++-
T Consensus       101 Lvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~  180 (531)
T PF15450_consen  101 LVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLG  180 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHH
Confidence            334455666666666666677777777777777776666554332 2              2233344444555555555


Q ss_pred             HHHHHHhHhhhh-----hHHHHHHHHHHHHHHH
Q 005378          371 MNMESIMRNREL-----TETRMIQALREELASV  398 (699)
Q Consensus       371 ~E~~~L~e~~s~-----~Eke~lqSLE~eLksl  398 (699)
                      +++..-.-+.+.     +.+. ..+++..+++.
T Consensus       181 eEmS~r~l~reakl~~~lqk~-f~alEk~mka~  212 (531)
T PF15450_consen  181 EEMSLRFLKREAKLCSFLQKS-FLALEKRMKAQ  212 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            554443332222     2444 33555555554

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=83.99  E-value=53  Score=33.45  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVA  456 (699)
Q Consensus       420 e~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s  456 (699)
                      +....++....+..|..+|.|+.+=+.++.+|+++++
T Consensus         4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~   40 (182)
T PF15035_consen    4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLS   40 (182)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444566677789999999999999999999999984

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=83.93  E-value=1.5e+02  Score=38.56  Aligned_cols=50  Identities=16%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378          429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (699)
Q Consensus       429 elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r  478 (699)
                      .+.+-+..++..+.-...++.++...+.-+..++..+..+..+++.+..+
T Consensus       882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~  931 (1294)
T KOG0962|consen  882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT  931 (1294)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH
Confidence            34444555555666666777777777777888888888888777777544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.71  E-value=24  Score=38.57  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          351 SIDALKKQAALSEGNLASLQMNMESI  376 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~L  376 (699)
                      .+..++++-......|.+++.+...+
T Consensus        51 el~~le~Ee~~l~~eL~~LE~e~~~l   76 (314)
T PF04111_consen   51 ELEKLEQEEEELLQELEELEKEREEL   76 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=82.16  E-value=93  Score=34.97  Aligned_cols=51  Identities=20%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005378          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV  327 (699)
Q Consensus       277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er  327 (699)
                      +..+|..++.+...=...|+..+.++.+-...|......|+..|.....-+
T Consensus        44 ~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl   94 (384)
T PF03148_consen   44 SNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPL   94 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            456677777777777777777777666666666666666666666554333

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=81.94  E-value=18  Score=31.24  Aligned_cols=65  Identities=20%  Similarity=0.135  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378          294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS  362 (699)
Q Consensus       294 qLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~  362 (699)
                      .||..+..|+..++.+..++..-+.++..+..++...    ..+|..+-.++..|+..++.+.++++..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~----~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSA----ERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3677777778888888888888888888877666554    3455566777777777777777765544

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=81.26  E-value=27  Score=32.62  Aligned_cols=69  Identities=25%  Similarity=0.367  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          515 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE  591 (699)
Q Consensus       515 lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~~~~  591 (699)
                      +-.+..+||.+...++..        -.+.......|++.|-.|-..|-.+..|..+|.|+-+.+..|....+-+..
T Consensus         3 la~eYsKLraQ~~vLKKa--------VieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen    3 LAQEYSKLRAQNQVLKKA--------VIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888887777742        244556778999999999999999999999999999999999888776664

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=81.11  E-value=59  Score=36.27  Aligned_cols=18  Identities=28%  Similarity=0.444  Sum_probs=7.6

Q ss_pred             HHHHHHHHHhhhhhHHHH
Q 005378          270 KEARLARVCAGLSSRLQE  287 (699)
Q Consensus       270 ke~qLa~~~aRLrK~~~E  287 (699)
                      ++--|-..|.-+.+++.|
T Consensus        83 ~~eglr~i~es~~e~q~e  100 (401)
T PF06785_consen   83 KDEGLRKIRESVEERQQE  100 (401)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            333444444444444433

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=81.04  E-value=68  Score=32.67  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE  405 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E  405 (699)
                      |-..|.+-...++..|+.+...|..|..++.-+-.+ ...++.+|..=+..+..|
T Consensus        75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~-~~~l~~eL~~ke~~~~~e  128 (182)
T PF15035_consen   75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQD-WERLRDELEQKEAEWREE  128 (182)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            445555555667777777777777777777665555 555555555444444333

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=80.99  E-value=58  Score=32.60  Aligned_cols=130  Identities=17%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             hhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHHH
Q 005378          229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE----YKSENAQLEELLVAERE  304 (699)
Q Consensus       229 ~~~~~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~E----Lkke~aqLEe~l~elqe  304 (699)
                      .++++-+.+...+..+.+..+..-++++...|.........+..+|..-..+|+...+-    ..-.+-++..-      
T Consensus         7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~------   80 (158)
T PF09486_consen    7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRY------   80 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHH------
Confidence            34556666666666666666666555555555555443334444444444444433330    01112222222      


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL  369 (699)
Q Consensus       305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeel  369 (699)
                       .+.+..++..++.++..++..+....+    +++.....|..+..+|+...+.+.++.-.++..
T Consensus        81 -r~~l~~~~~~~e~~~a~l~~~l~~~~~----~ia~~~raIarn~a~id~~~er~~~l~r~~ea~  140 (158)
T PF09486_consen   81 -RDVLEERVRAAEAELAALRQALRAAED----EIAATRRAIARNDARIDVCRERIDRLRRAAEAA  140 (158)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence             234444555555555554444444332    333344445555555555555555544444433

>PRK10698 phage shock protein PspA; Provisional

Probab=80.45  E-value=78  Score=33.01  Aligned_cols=88  Identities=17%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378          312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL--------VSSIDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (699)
Q Consensus       312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eL--------e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~  383 (699)
                      ....++..+...+......+..-..+|.+++..++.-        ...+..++.++......+.++......|...+...
T Consensus        53 ~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea  132 (222)
T PRK10698         53 EKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET  132 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444332        34555555555555555555555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005378          384 ETRMIQALREELASVER  400 (699)
Q Consensus       384 Eke~lqSLE~eLkslQ~  400 (699)
                      ..+ ...|--+.++++.
T Consensus       133 k~k-~~~L~aR~~~A~a  148 (222)
T PRK10698        133 RAR-QQALMLRHQAASS  148 (222)
T ss_pred             HHH-HHHHHHHHHHHHH
Confidence            444 3444434444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=80.43  E-value=96  Score=34.03  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          543 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       543 ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~  579 (699)
                      .+-..+.++.+.++..|..|..+.....+|....-..
T Consensus       218 e~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~  254 (294)
T COG1340         218 ELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAA  254 (294)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556655555555555555555444443

>KOG0992 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.13  E-value=1.3e+02  Score=35.35  Aligned_cols=44  Identities=14%  Similarity=0.168  Sum_probs=36.2

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          536 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       536 ~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~  579 (699)
                      +|.++...+=.+|--|--.++.|...++-|..-...|...+++-
T Consensus       471 ~~qqDka~lierivrLQ~a~arknekiefLe~h~~qlveevQKk  514 (613)
T KOG0992|consen  471 SPQQDKADLIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKK  514 (613)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Confidence            44566777888999999999999999999998888887777663

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=80.07  E-value=1.3e+02  Score=35.13  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378          421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL  469 (699)
Q Consensus       421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL  469 (699)
                      .+++...+.|-++++..|+.|+|-++.-.-|+-+++-+..+|-.|+.++
T Consensus       386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry  434 (527)
T PF15066_consen  386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY  434 (527)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            3455666778889999999999999888888888888999998888766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	699
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	3e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 88.0 bits (218), Expect = 5e-18
 Identities = 57/319 (17%), Positives = 128/319 (40%), Gaps = 19/319 (5%)

Query: 284  RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA------ 337
             +Q    E  + +E         +  E +  QL +E ++ + ++       AEA      
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 338  LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
            LAAK  E+E ++  ++A  ++       L + +  M+   +  +L E        EE  +
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ--QMLDLEEQL------EEEEA 969

Query: 398  VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
              ++ + E+   +       +  + +E +  + +     ++    + T    E E+K   
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 458  LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEA 517
            L       +  + ++E RLK+ ++KS +E  +  +  + E     +   + + +++ L+A
Sbjct: 1030 LTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 518  EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ-- 575
            ++ K   E+ A     E     +     K+ REL   +   Q  LE+  + +  AE Q  
Sbjct: 1089 QLAKKEEELQAALARLEDE-TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

Query: 576  -LEKEMNRLQEVQSEAERS 593
             L +E+  L+    +   +
Sbjct: 1148 DLSEELEALKTELEDTLDT 1166

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 61/339 (17%), Positives = 139/339 (41%), Gaps = 41/339 (12%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            ++  QL E + LL+  +       A    +   L+++ QE +    ++E  +  E E S+
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 308  SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
              +A  K+++Q++   + ++ + E+   +    K     T    I  ++    + E    
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK----VTADGKIKKMEDDILIMEDQNN 1000

Query: 368  SLQMNMESIMRNRELTETRMIQALREELASVERR-AEEERAAHNATKMAAMEREVELEHR 426
             L               T+  + L E ++ +    AEEE  A N TK+       + E  
Sbjct: 1001 KL---------------TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHESM 1040

Query: 427  AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +E  + L + ++   E      +LE + + L  + A LQ ++ +++A+L + +++    
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE---- 1096

Query: 487  ANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 546
                +QA    +E     + +A  K+  LE+ +  ++ ++ +         +    + EK
Sbjct: 1097 ----LQAALARLEDETSQKNNALKKIRELESHISDLQEDLES--------EKAARNKAEK 1144

Query: 547  RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585
            + R+L++ L   +T+LE      A  +     +     +
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 17/276 (6%)

Query: 344  EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403
            E++     +   K++   +E  L  L+         +   E  ++Q   +    +   AE
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELE-----QKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 404  EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463
            E R    A K    E   E+E R  E      ++Q    +   +  +LE+++   E    
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 464  TLQQELQDMEARLKR------GQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEA 517
             LQ E    + ++K+        +    +  +  +  ++ V        + E K  +L  
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 518  EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE 577
               K    ++ ++   +    +   ELEK  R+L         Q+  + ++ A  + QL 
Sbjct: 1033 LKNKHESMISELEVRLKK-EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 578  KEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 613
            K+   LQ   +  E     +          +++ LE
Sbjct: 1092 KKEEELQAALARLEDETSQKN-----NALKKIRELE 1122

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 38/254 (14%), Positives = 95/254 (37%), Gaps = 20/254 (7%)

Query: 247  TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
              E+ ++ +    L+  +   ++   +L         ++++ + +   +E+      +  
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 307  RSYEARIKQLEQELSVYKSEV---TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363
            +  E R+  L   L+  + +    TK+++     ++     ++    S   L+K     E
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 364  GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423
            G  + L   +  +       +   +    EEL +   R E+E +  N     A+++  EL
Sbjct: 1067 GESSDLHEQIAELQAQIAELK-AQLAKKEEELQAALARLEDETSQKN----NALKKIREL 1121

Query: 424  EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483
            E   ++        + +  E+ A+  + E++   L  E   L+ EL+D           +
Sbjct: 1122 ESHISDLQ------EDLESEKAARN-KAEKQKRDLSEELEALKTELED-----TLDTTAT 1169

Query: 484  PEEANQAIQAWQDE 497
             +E   +     D+
Sbjct: 1170 QQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 4/210 (1%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
             E+   D     ++  I   + +  +L +    L  R+ +  +  A+ EE      +L  
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 308  SYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364
             +E+ I +LE  L   +    ++E     L    +  + +I  L + I  LK Q A  E 
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 365  NLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424
             L +    +E    +++    + I+ L   ++ ++   E E+AA N  +    +   ELE
Sbjct: 1096 ELQAALARLED-ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 425  HRAAEASMALARIQRIADERTAKAGELEQK 454
                E    L       + R +   + + K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 71.3 bits (175), Expect = 7e-13
 Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 3/209 (1%)

Query: 378  RNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMA-LAR 436
              R            + +  ++       A     K+    R VE   +        + +
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ 932

Query: 437  IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQD 496
            +QR  DE+  +   L +K+  LE+  +T  ++L+    RL+  ++++ + A   + + Q+
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA-KNATNRVLSLQE 991

Query: 497  EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY 556
            E+ + R+     + +  ++E    K + E   +  + +  +     E E+  R + D   
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051

Query: 557  YKQTQLET-MASEKAAAEFQLEKEMNRLQ 584
                 +E  +  E    E  L  E  R Q
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.1 bits (159), Expect = 6e-11
 Identities = 28/229 (12%), Positives = 80/229 (34%), Gaps = 24/229 (10%)

Query: 380  RELTETRMIQALREELASV----ERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA 435
            R        Q +  E  S+      R    R  ++ T  A +  +       A+      
Sbjct: 850  RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR---EL 906

Query: 436  RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK------RGQKKSPEEANQ 489
            +  +I           ++    LE +   LQ+++ +     K         + +     +
Sbjct: 907  KKLKIEARS---VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 490  AIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 549
             +++  + +  + +  ++A N++ SL+ E+ K+R E+          ++ E   +E+   
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ--------TQTEKKTIEEWAD 1015

Query: 550  ELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRR 598
            +         ++L+   +     + +L + ++   +  +E    ++   
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 39/211 (18%)

Query: 270  KEARLARVCAGLSSRLQEYK----SENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325
            +E +  ++ A    R ++      ++  QL+  +  + +  +S   ++  LE   S    
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 326  EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
            ++        E L     E +   + + +L+++                           
Sbjct: 964  KLRSDV----ERLRMSEEEAKNATNRVLSLQEE--------------------------- 992

Query: 386  RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
              I  LR+EL   +   +      +  K    +   EL+ +          + R   ++ 
Sbjct: 993  --IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARL 476
             +  E  +K   L  E   L+ +L D   R 
Sbjct: 1051 KEITETMEK--KLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 40/251 (15%), Positives = 81/251 (32%), Gaps = 21/251 (8%)

Query: 279  AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338
            A L   L   K +    E   +  ++  R + AR+             +  ++      +
Sbjct: 847  ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT-----LKAIVYLQCCYRRMM 901

Query: 339  AAK-NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM-RNRELTETR--MIQALREE 394
            A +   +++    S++  KK     E  +  LQ  ++      + L E    +      E
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 395  LASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454
               +    E  R +    K  A  R + L+   A+    L + Q         A + + +
Sbjct: 962  TEKLRSDVERLRMSEEEAK-NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 455  VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSS 514
               L  E       L+  +           EE N+ I     E+    + +   E K   
Sbjct: 1021 TEQLVSELKEQNTLLKTEK-----------EELNRRIHDQAKEITETMEKKLVEETKQLE 1069

Query: 515  LEAEVQKMRVE 525
            L+   +++R +
Sbjct: 1070 LDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/201 (13%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 229  ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
             TL      Q         +E  +L      ++         E ++ +    L  ++ E 
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ----LQRKIDEQ 940

Query: 289  KSENA-------QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341
              E          LE     E E  RS   R++  E+E     + V     +L E +A  
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV----LSLQEEIAKL 996

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401
              E+    +    +++ A   +     L   ++      +  +  + + + ++   +   
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056

Query: 402  AEEERAAHNATKMAAMEREVE 422
             E++           +  E  
Sbjct: 1057 MEKKLVEETKQLELDLNDERL 1077

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 8e-09
 Identities = 74/586 (12%), Positives = 168/586 (28%), Gaps = 168/586 (28%)

Query: 214 PVNSESSLKDADVK-VE-----TLSNKRKQQALKADDPPTK--------EQDQLDEAQGL 259
            V  ++ + + D K V+      LS +     + + D  +            Q +  Q  
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 260 LKTTISTGQS-KEARLARVCAGLSSRLQEYKSENAQL--EELLVAERELSRSYEARIKQL 316
           ++  +        + +       S   + Y  +  +L  +  + A+  +SR       +L
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKL 140

Query: 317 EQELSVYKSE--VT--------KVESNLAEALAAKNSEIETL------------VSSIDA 354
            Q L   +    V         K  + +A      + +++               +S + 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK--TWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 355 -LKKQAALS---EGNLASLQMNMESIMRNRELTETRMIQALREE--------LASVERRA 402
            L+    L    + N  S   +  +I       +  + + L+ +        L +V+   
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 403 EEE------------RAAHNATKMAAMER-EVELEHRA-----AEASMALARIQRIADER 444
                          R       ++A     + L+H +      E    L +        
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---- 313

Query: 445 TAKAGEL-EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQ 503
             +  +L  + +       + + + ++D  A     +  + ++    I++          
Sbjct: 314 --RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---------- 361

Query: 504 GQRDAENKLSSLE-AEVQKMRVEMAAMKRDA-----------EHYSREEHME-------- 543
                   L+ LE AE +KM   ++     A               + + M         
Sbjct: 362 -------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 544 --LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWS 601
             +EK+ +E T  +      LE     K   E+ L + +  +              +++ 
Sbjct: 415 SLVEKQPKEST--ISIPSIYLEL--KVKLENEYALHRSI--VDHYN--------IPKTFD 460

Query: 602 SWEEDAEMKSLEPLPL-----HH--RHIAGASVQLQKAA----KLLD----SGAVRATRF 646
           S +       L P  L      H   H+       ++        LD       +R    
Sbjct: 461 SDD-------LIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 647 LWRYPIARIILL----FYLVFV-------HLFLMYLLHRLQEQADN 681
            W    + +  L    FY  ++          +  +L  L +  +N
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 82/332 (24%)

Query: 4   WLK-----AAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRH 58
           WL      + E + E++ +    +                       +    R+   + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPY 243

Query: 59  SADESLKINDTAREQANTQASPVDVTPNKDTATLAVE-KETITTGKTQKNGEQQQTNERD 117
                L +               +V   K      +  K  +TT              R 
Sbjct: 244 E--NCLLVLL-------------NVQNAKAWNAFNLSCKILLTT--------------RF 274

Query: 118 APSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLP--- 174
                +T+     +           T T  +       +L        L+  P  LP   
Sbjct: 275 KQ---VTDFLSAATTTHISLDHHSMTLTPDEVK----SLL----LKY-LDCRPQDLPREV 322

Query: 175 ----PKEMGIVNEDRIDDAGQIT--KSADADAPLK-IDSKIQAVDPPVNSE--SSL---- 221
               P+ + I+ E   D        K  + D     I+S +  ++P    +    L    
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 222 KDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGL 281
             A +    LS       +  D     + D +     L K ++   Q KE+ +      +
Sbjct: 383 PSAHIPTILLS------LIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTI-----SI 428

Query: 282 SSRLQEYK---SENAQLEELLVAERELSRSYE 310
            S   E K        L   +V    + ++++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 53.0 bits (126), Expect = 3e-07
 Identities = 44/395 (11%), Positives = 113/395 (28%), Gaps = 6/395 (1%)

Query: 204 IDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT 263
            ++ +Q  D    + S +K    K E   +       + +      Q+  +       + 
Sbjct: 389 KEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV 448

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
            +  Q    +   + A    R +  +     LE +     E ++        +E  +   
Sbjct: 449 NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDL 508

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
           +           + L   + + +  +   D  ++        ++ +       M      
Sbjct: 509 QDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPY 568

Query: 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443
            T   Q +  +   V +       A         + E   +   A+A++    IQ   +E
Sbjct: 569 TTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEE 628

Query: 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQ 503
               + E+   +          ++ + + + ++ + +     +  Q  +A   + +    
Sbjct: 629 IGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLE----GDHQQIQEALIFDNKHTNY 684

Query: 504 GQRDAENKLSSLEAEVQKM--RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQ 561
                      L   + +    VE   + RDA+  S+E+  E    +             
Sbjct: 685 TMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDC 744

Query: 562 LETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS 596
            +  A   +      E E  R+  +        V+
Sbjct: 745 EDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVT 779

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 37/250 (14%), Positives = 73/250 (29%), Gaps = 5/250 (2%)

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429
            +  +   +N        +        +        +A   A           ++ ++ E
Sbjct: 585 SVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVE 644

Query: 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
                 R       + A       + A  + E   L+QE +    R K   +   E+A +
Sbjct: 645 PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704

Query: 490 AIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 549
            +   +                 S  EA   +    +   K  A+  + E   ELE+  +
Sbjct: 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKK 764

Query: 550 ELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEM 609
                L Y + QLE +   KA     +E +  +           R    +      + ++
Sbjct: 765 VREMELIYARAQLE-LEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA----GPEMQV 819

Query: 610 KSLEPLPLHH 619
           K L+ L L  
Sbjct: 820 KLLQSLGLKS 829

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 13/288 (4%)

Query: 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI---DALKK 357
           A  +L  +Y    +   +      +++  V   + +A  A  S +   V+S+   D  K 
Sbjct: 535 ARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKN 594

Query: 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417
            A +    +   +M+ ++      L + R      +    V     +     +     A+
Sbjct: 595 SARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
           +R V+L       S   A             G LE++  + + E    ++EL ++EA   
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714

Query: 478 RGQK--KSPEEANQAIQAWQDEVERA-RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 534
             +    +  EA    +A + E E +  Q +  A+      EAE+++++       R+ E
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVK-----KVREME 769

Query: 535 HYSREEHMELE-KRYRELTDLLYYKQTQLET-MASEKAAAEFQLEKEM 580
                  +ELE  + ++L ++   K  ++   +             EM
Sbjct: 770 LIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 31/257 (12%), Positives = 79/257 (30%), Gaps = 20/257 (7%)

Query: 369  LQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428
                  +    + + + +     R+   S+E       A     K     +  E+    A
Sbjct: 769  SDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEA 828

Query: 429  EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488
              +    +++ I  +R             ++   + L++  Q+    L+  + K  ++  
Sbjct: 829  IYNSLQTKLRLI--KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI-ELKRQKKIA 885

Query: 489  QAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRY 548
              +Q    +  R  + + +      S+     +    + A++   +         LE   
Sbjct: 886  VLLQ----KYNRILK-KLENWATTKSVYLGSNETGDSITAVQAKLK--------NLEAFD 932

Query: 549  RELTDLLYYKQTQLETMASEKAAAEFQLEKEM----NRLQEVQSEAERSRVSRRSWSSWE 604
             E   L     + L ++ ++     +    E+    +     Q    +S       +   
Sbjct: 933  GECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLA 992

Query: 605  EDAEMKSLEPLPLHHRH 621
            E   ++ +E L  HH H
Sbjct: 993  ELERLQKIEDLHHHHHH 1009

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 30/290 (10%), Positives = 91/290 (31%), Gaps = 20/290 (6%)

Query: 318 QELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377
           Q L+ Y      + +     +    +    +++S++       +S   +    +     +
Sbjct: 371 QSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSV 430

Query: 378 RNRELTET---------RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428
             +   +T          ++Q  RE L    R  +EE A  N  +    ER         
Sbjct: 431 IEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNEL 490

Query: 429 EASM--ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
              +       + + D+     G++++           L +   ++ A +         +
Sbjct: 491 YKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQ 550

Query: 487 ANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKM--RVEMAAMKRDAEHYSREEHMEL 544
            ++ +   +  +    + +++ E   + L++    M  +   A  +    +       EL
Sbjct: 551 GSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTEL 610

Query: 545 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 594
           ++ Y  L        T+++    ++      ++       +++     + 
Sbjct: 611 DRVYGGL-------TTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEAN 653

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 8/34 (23%)

Query: 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346
           +K+L+  L +Y       +S  A ALA   + +E
Sbjct: 22  LKKLQASLKLYAD-----DS--APALAI-KATME 47

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 466 QQELQDMEARLKRGQKKSPEEANQ-AIQAWQDEVE 499
           +Q L+ ++A LK     + + A   AI+A    +E
Sbjct: 19  KQALKKLQASLK---LYADDSAPALAIKA---TME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	699
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	99.91
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.16
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.82
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.67
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.53
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.27
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.06
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.9
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.6
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.56
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.5
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.96
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.25
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.99
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.93
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.41
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	94.02
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	93.93
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	93.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.32
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.78
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	92.36
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.31
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.23
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	91.0
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	90.69
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.54
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.31
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	89.7
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	89.52
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.27
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	86.53
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.6
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	84.79
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.23
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.72
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	83.16
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.84
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	82.28
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	81.32
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.05
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.87
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	80.05

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=99.91  E-value=5.2e-23  Score=198.44  Aligned_cols=159  Identities=23%  Similarity=0.240  Sum_probs=141.6

Q ss_pred             hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378          241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL  320 (699)
Q Consensus       241 k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL  320 (699)
                      +.|+|+++|++||+|+|.+||+|+++           ++||||+++|+.+..+++|..+++++++++.|++....|+.++
T Consensus         3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~   71 (168)
T 3o0z_A            3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY   71 (168)
T ss_dssp             -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999996           9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH----HHHH
Q 005378          321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA  396 (699)
Q Consensus       321 ~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE----~eLk  396 (699)
                      ..+|+.+.+..++ +.+   +...+.+|++|+.+|..++++++.+++++..+++.|.++++++||+ +++++    ++|+
T Consensus        72 ~~LQa~L~qEr~~-r~q---~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK  146 (168)
T 3o0z_A           72 YQLQAILEAERRD-RGH---DSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK  146 (168)
T ss_dssp             HHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence            9999999998773 323   7788899999999999999999999999999999999999999999 99999    8899


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005378          397 SVERRAEEERAAHNATKMA  415 (699)
Q Consensus       397 slQ~aLe~E~~aHk~Tk~e  415 (699)
                      ++|++|++|..+|+.|++.
T Consensus       147 alQ~~~eqE~~~H~~Tkar  165 (168)
T 3o0z_A          147 SLQQRLEQEVNEHKVTKAR  165 (168)
T ss_dssp             HHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999873

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.16  E-value=4e-06  Score=81.62  Aligned_cols=35  Identities=6%  Similarity=0.025  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378          346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (699)
Q Consensus       346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~  380 (699)
                      ..+...+..+...+.....++..+..+...+...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (284)
T 1c1g_A           72 ELAEKKATDAEADVASLNRRIQLFEEELDRAQERL  106 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.09  E-value=1.2e-05  Score=78.17  Aligned_cols=32  Identities=13%  Similarity=0.051  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          548 YRELTDLLYYKQTQLETMASEKAAAEFQLEKE  579 (699)
Q Consensus       548 l~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~  579 (699)
                      +..+...+...+..+..+....+.+..+++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (284)
T 1c1g_A          246 VTKLEKSIDDLEDELYAQKLKYKAISEELDHA  277 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.82  E-value=7.4e-09  Score=125.86  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          542 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  584 (699)
Q Consensus       542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~  584 (699)
                      ..++.++.+|.++|.+.......+..++..|..+++.+..+++
T Consensus      1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S         1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555444444455555555555555444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.67  E-value=3.9e-08  Score=119.59  Aligned_cols=98  Identities=12%  Similarity=0.071  Sum_probs=37.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378          281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA  360 (699)
Q Consensus       281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~  360 (699)
                      +++.+.+++.....++..+.++......|+.++..++.++..++..+...+.    .+.....++..++.++..++.++.
T Consensus       862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~----~l~~l~~~~~~Le~~l~ele~ele  937 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE----MRVRLAAKKQELEEILHEMEARIE  937 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444455555555555555555555544444433322    222233344444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhh
Q 005378          361 LSEGNLASLQMNMESIMRNREL  382 (699)
Q Consensus       361 r~k~rLeelq~E~~~L~e~~s~  382 (699)
                      ..+..+..++.++..+...+..
T Consensus       938 e~ee~l~el~~e~~~le~el~~  959 (1184)
T 1i84_S          938 EEEERSQQLQAEKKKMQQQMLD  959 (1184)
T ss_dssp             HHHHC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444433333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.53  E-value=0.024  Score=56.14  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 005378          296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN---  372 (699)
Q Consensus       296 Ee~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E---  372 (699)
                      ++.+.--++.+..+..++.+|+.+|..-|..=..++..+-..|......+..|+.++..+..++...+.++.....+   
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~   88 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK   88 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556677777888888888888888777777776666666666667777777777777777777666666555   


Q ss_pred             -HHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378          373 -MESIMRNRELTETRMIQALREELASVERRAE  403 (699)
Q Consensus       373 -~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe  403 (699)
                       ...|+..++.+... +.++...|+.++++-+
T Consensus        89 ~~~~Lq~el~~l~~~-~~~l~~~ireLEq~ND  119 (189)
T 2v71_A           89 QVSVLEDDLSQTRAI-KEQLHKYVRELEQAND  119 (189)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence             33344444333333 4444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.27  E-value=0.052  Score=52.76  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             HHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 005378          374 ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM---AAMEREVELEHRAAEASMALARIQRIADERT---AK  447 (699)
Q Consensus       374 ~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~---ea~~Re~~LEeenaelseALa~lQrkL~EEk---~r  447 (699)
                      +-|++....+++. +.+|+.++..+|..|+.|+......-.   ++..|...|+.+.   ........+-..+.+   -+
T Consensus        51 rELq~~~~~L~~~-k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El---~~~k~~~~k~~~e~r~L~Ek  126 (168)
T 3o0z_A           51 RELQERNRILENS-KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEV---KHLKHNLEKVEGERKEAQDM  126 (168)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444 566666677777777777766555433   3334444443333   222222222222222   46


Q ss_pred             HHHHHHHHhhhH----HHHHHHHHHHHH
Q 005378          448 AGELEQKVAMLE----VECATLQQELQD  471 (699)
Q Consensus       448 a~eLeqQ~smLe----~dl~qLkQeLqd  471 (699)
                      +..|++..+.++    ++++.+++.++.
T Consensus       127 l~~lEKe~a~~eid~~~eLKalQ~~~eq  154 (168)
T 3o0z_A          127 LNHSEKEKNNLEIDLNYKLKSLQQRLEQ  154 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            678888888888    668888888754

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.06  E-value=0.17  Score=51.62  Aligned_cols=22  Identities=5%  Similarity=-0.106  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005378          422 ELEHRAAEASMALARIQRIADE  443 (699)
Q Consensus       422 ~LEeenaelseALa~lQrkL~E  443 (699)
                      .+++..+++...++.++..+..
T Consensus       140 ~l~~~~~~~~~~~~e~~~e~~~  161 (256)
T 3na7_A          140 LALELESLVENEVKNIKETQQI  161 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.90  E-value=0.19  Score=51.17  Aligned_cols=29  Identities=17%  Similarity=0.147  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          343 SEIETLVSSIDALKKQAALSEGNLASLQM  371 (699)
Q Consensus       343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~  371 (699)
                      .++.++...+..++.++...+.++.+.+.
T Consensus        53 ~~l~d~~~~~~~~e~~i~~~~~ri~~~~~   81 (256)
T 3na7_A           53 EEKLALKLQVSKNEQTLQDTNAKIASIQK   81 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.60  E-value=0.065  Score=65.12  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=8.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHHH
Q 005378          453 QKVAMLEVECATLQQELQDME  473 (699)
Q Consensus       453 qQ~smLe~dl~qLkQeLqd~e  473 (699)
                      .+++.|+.+...|+|.+.+++
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.56  E-value=0.46  Score=63.53  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (699)
Q Consensus       428 aelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q  480 (699)
                      +++.+.+...+.+|.+-+.++.+++.++..|+.+++.+..+.+.++.+++..+
T Consensus      2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A         2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555666666666666666666666666666555555555555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.50  E-value=0.074  Score=64.61  Aligned_cols=51  Identities=10%  Similarity=0.229  Sum_probs=9.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHH
Q 005378          275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSR----SYEARIKQLEQELSVYKS  325 (699)
Q Consensus       275 a~~~aRLrK~~~ELkke~aqLEe~l~elqek~~----~Lq~kl~qLQ~EL~~eQ~  325 (699)
                      ......|.+.+.+|+......|..+.+++++..    .+..++..|+.++..++.
T Consensus       920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~  974 (1080)
T 2dfs_A          920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM  974 (1080)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            334566666666676666666666666665544    333455555555555444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.96  E-value=3.1  Score=55.95  Aligned_cols=89  Identities=15%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          491 IQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA  570 (699)
Q Consensus       491 i~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~  570 (699)
                      ++.+++++......+..++.+|..+++.|+.|+.+.....        .....++.++......|..=..-+..|.+|+.
T Consensus      2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~--------~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A         2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI--------RETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            4555555554444444444455555555555554433221        22456777777788888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005378          571 AAEFQLEKEMNRLQEVQ  587 (699)
Q Consensus       571 sL~~qLE~~~~~a~~~~  587 (699)
                      -+..+.+.+..++...-
T Consensus      2088 RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2088 RWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcc
Confidence            99998888877766553

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.25  E-value=1.1  Score=42.95  Aligned_cols=68  Identities=13%  Similarity=0.166  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM  377 (699)
Q Consensus       307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~  377 (699)
                      ...+..+..++.+|+.+-..+|..-..+...   .+-+...++.|...|..++......+..++..+..|+
T Consensus        75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~---ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A           75 TKAEEEADKLNKEVEDLTASLFDEANNMVAD---ARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555544433322   3333444444444444444444444444444444443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.99  E-value=0.46  Score=45.16  Aligned_cols=60  Identities=22%  Similarity=0.378  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 005378          495 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL  555 (699)
Q Consensus       495 eeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L  555 (699)
                      +.++.+...-...++.++..++.+|..+.+.|+.+.-+-+.| ++....|+.+|+.|++.|
T Consensus        86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka-s~rE~~yee~I~~L~~kL  145 (147)
T 2b9c_A           86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL-LSKNYHLENEVARLKKLV  145 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHHHHHh
Confidence            344444444445566777888999999998898888665555 477899999999988765

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.93  E-value=2.3  Score=39.22  Aligned_cols=102  Identities=11%  Similarity=0.039  Sum_probs=70.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378          281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA  360 (699)
Q Consensus       281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~  360 (699)
                      +.+.+..++......+....++......|...+..|+..|..++..+...++    ..........+|...|..+...+.
T Consensus        18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE----~~~~L~~~k~eLe~~l~el~~rle   93 (129)
T 2fxo_A           18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE----RCDQLIKNKIQLEAKVKEMNKRLE   93 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555555555566677778888888888888877766665544    333456666677778888888888


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378          361 LSEGNLASLQMNMESIMRNRELTETR  386 (699)
Q Consensus       361 r~k~rLeelq~E~~~L~e~~s~~Eke  386 (699)
                      ..+.....+...++.+...+.++.++
T Consensus        94 eeee~~~~L~~~kkkle~e~~~Lk~~  119 (129)
T 2fxo_A           94 DEEEMNAELTAKKRKLEDECSELKRD  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887777777666

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.41  E-value=3  Score=38.35  Aligned_cols=59  Identities=24%  Similarity=0.371  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (699)
Q Consensus       415 ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e  473 (699)
                      ++-.|...|...+++|..-|..++..+.++-.....|...-.-++..+..|+.+|++++
T Consensus        66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345566666777778888888888888888888888888888888888888887765

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=94.02  E-value=5.2  Score=39.55  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=58.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378          304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (699)
Q Consensus       304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~  383 (699)
                      +.+.-......+....+..++.++..-....++=       =++|+..|..++.....++.++..+..+...+..+....
T Consensus        10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL-------E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~   82 (189)
T 2v71_A           10 EETAYWKELSMKYKQSFQEARDELVEFQEGSREL-------EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ   82 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667777777777777777665533322       124444455555555555555555555555554444333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMAL  434 (699)
Q Consensus       384 Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseAL  434 (699)
                      .++        .....+.|..+...-+.++..+..+.-+||..|-.|..+.
T Consensus        83 ~~e--------~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~  125 (189)
T 2v71_A           83 YAQ--------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK  125 (189)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            222        2222222223333333344444457777777774444433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.93  E-value=4.7  Score=38.69  Aligned_cols=91  Identities=16%  Similarity=0.234  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 005378          307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTET  385 (699)
Q Consensus       307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek  385 (699)
                      .....++..|..+|..++..|...+.    .....+.++++|-..| +.++..+...+..-..++.-+..|...+.+.+.
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~  129 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDT  129 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788888888888888877765    3445888999999888 889999988888878888888888888888777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005378          386 RMIQALREELASVERRA  402 (699)
Q Consensus       386 e~lqSLE~eLkslQ~aL  402 (699)
                      . +.+++..|..|+.-+
T Consensus       130 ~-l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          130 L-LDTLTLQLKNLKKVM  145 (154)
T ss_dssp             H-HHHHHHHHHHHHHTT
T ss_pred             H-HHHHHHHHHHHHHHH
Confidence            7 888888877776543

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=93.46  E-value=1  Score=41.12  Aligned_cols=94  Identities=14%  Similarity=0.209  Sum_probs=54.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005378          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERE----LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL  348 (699)
Q Consensus       273 qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe----k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eL  348 (699)
                      .|.....+|++.++.+......||..+.+-.+    .++.|...+..-+..|..+|..+.+.++.              +
T Consensus        10 ~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~--------------v   75 (112)
T 1x79_B           10 KLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD--------------V   75 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence            35555667777777777777777776665433    44577778888888888888888887773              3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378          349 VSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (699)
Q Consensus       349 e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~  380 (699)
                      +..|..|...-+++...|..++.+|+.|.-++
T Consensus        76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~  107 (112)
T 1x79_B           76 QEQMAVLMQSREQVSEELVRLQKDNDSLQGKH  107 (112)
T ss_dssp             HHHHHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence            44556666666677777777777777776554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.36  E-value=0.75  Score=51.10  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378          432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL  469 (699)
Q Consensus       432 eALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL  469 (699)
                      +-+.++++++++.+.+..++.+++..+..+++++.+++
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445666666666666666665555555555554444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.32  E-value=1.7  Score=48.29  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378          355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (699)
Q Consensus       355 LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe  403 (699)
                      +.+.++..+.+.+.+..++..+.+......+. +..++.+...++..++
T Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~  554 (597)
T 3oja_B          507 LNKVFTHLKERQAFKLRETQARRTEADAKQKE-TEDLEQENIALEKQLD  554 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcc-hhhHHhhhHHHHHHHh
Confidence            33334444444444444444444444443333 4444444444444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.78  E-value=4.5  Score=35.90  Aligned_cols=21  Identities=10%  Similarity=0.044  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 005378          347 TLVSSIDALKKQAALSEGNLA  367 (699)
Q Consensus       347 eLe~RL~~LeqeL~r~k~rLe  367 (699)
                      .|..+|+.++.++.....+|.
T Consensus        48 sL~kk~~~lE~eld~~ee~L~   68 (101)
T 3u1c_A           48 QLEKQLRVTEDSRDQVLEELH   68 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444443333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.36  E-value=0.61  Score=43.86  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (699)
Q Consensus       307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~  371 (699)
                      ...+..+..++.+|+.+-..++..-..+...   .+-+...++.+...|..++......+..++.
T Consensus        63 ~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~---ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~  124 (135)
T 2e7s_A           63 TKAEEEADKLNKEVEDLTASLFDEANNLVAD---ARMEKYAIEILNKRLTEQLREKDMLLDTLTL  124 (135)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555544433321   3333334444444444444444333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.31  E-value=6.5  Score=35.82  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378          251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (699)
Q Consensus       251 kQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~  322 (699)
                      +.|...+..|+.|.+.          ...++.....+..+....|+..+..++.....|...+..|+...+.
T Consensus         6 rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD   67 (111)
T 2v66_B            6 RDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD   67 (111)
T ss_dssp             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            3455556666666664          5555555666666666666666666666666666666666655544

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.23  E-value=7.2  Score=34.39  Aligned_cols=25  Identities=8%  Similarity=0.069  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          347 TLVSSIDALKKQAALSEGNLASLQM  371 (699)
Q Consensus       347 eLe~RL~~LeqeL~r~k~rLeelq~  371 (699)
                      .|+.++..++.++.....++..++.
T Consensus        48 sL~kKiq~lE~eld~~~e~l~~a~~   72 (101)
T 3u59_A           48 GLQKKLKGTEDEVEKYSESVKEAQE   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444433333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.00  E-value=0.46  Score=44.67  Aligned_cols=91  Identities=15%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 005378          307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTET  385 (699)
Q Consensus       307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek  385 (699)
                      ..+..++..|..+|..++..|...+.    .....+.++++|...| +.++..+...+..-..++.-+..|...+.+.+.
T Consensus        42 ~~~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~  117 (135)
T 2e7s_A           42 SDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM  117 (135)
T ss_dssp             TTHHHHHHTHHHHHHHTTSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788888888888888888766    3446788999999988 899999998888888888889999999988877


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005378          386 RMIQALREELASVERRA  402 (699)
Q Consensus       386 e~lqSLE~eLkslQ~aL  402 (699)
                      - +.+++..|..|+.-+
T Consensus       118 l-l~~lq~QL~~LK~v~  133 (135)
T 2e7s_A          118 L-LDTLTLQLKNLKKVM  133 (135)
T ss_dssp             C-C--------------
T ss_pred             H-HHHHHHHHHHHHHHh
Confidence            7 888888888877544

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=90.69  E-value=4.5  Score=36.92  Aligned_cols=83  Identities=11%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378          304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (699)
Q Consensus       304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~  383 (699)
                      +-...|+..+.+|+.+|..+...+..+++...+.-+.=..+++.|..+++..++.|..+....+.++.+.+.=+..+...
T Consensus         6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~   85 (112)
T 1x79_B            6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS   85 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777777888888888888888887777776677778888888888888888888888887777766666655554


Q ss_pred             HHH
Q 005378          384 ETR  386 (699)
Q Consensus       384 Eke  386 (699)
                      -++
T Consensus        86 Re~   88 (112)
T 1x79_B           86 REQ   88 (112)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.54  E-value=10  Score=34.59  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 005378          284 RLQEYKSENAQLEELLVAERELSRSYEA----RIKQLEQELSVYKSEVTKVE  331 (699)
Q Consensus       284 ~~~ELkke~aqLEe~l~elqek~~~Lq~----kl~qLQ~EL~~eQ~er~q~e  331 (699)
                      +..+|+..+..|.-.+...+.+......    .+..||.++..++.....+.
T Consensus         4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~   55 (111)
T 2v66_B            4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH   55 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443322    34444444444444444433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.31  E-value=13  Score=35.60  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          348 LVSSIDALKKQAALSEGNLASLQMNMESIM  377 (699)
Q Consensus       348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~  377 (699)
                      +++.|.+++..+.....+...++.+++.+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~   55 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVT   55 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=89.70  E-value=15  Score=35.26  Aligned_cols=41  Identities=22%  Similarity=0.197  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005378          430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ  470 (699)
Q Consensus       430 lseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLq  470 (699)
                      |..-|..+..+|.+--.++.+.++.+..|+.++..+-.+|.
T Consensus        75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~  115 (155)
T 2efr_A           75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666655555553

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.52  E-value=7.5  Score=34.65  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=16.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLA  335 (699)
Q Consensus       303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~  335 (699)
                      +.+....+..+..++.+|+.+-.+++..-..+.
T Consensus        39 ~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MV   71 (97)
T 2eqb_B           39 NELRTKAEEEADKLNKEVEDLTASLFDEANNMV   71 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555555444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.27  E-value=13  Score=32.86  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378          348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE  399 (699)
Q Consensus       348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ  399 (699)
                      ++.+|+.|..+......+.+.++..++.+.......+.+ +.+|...+..++
T Consensus         7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~E-i~sL~kk~~~lE   57 (101)
T 3u1c_A            7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDD-IVQLEKQLRVTE   57 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444 444444443333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=86.53  E-value=7.5  Score=33.56  Aligned_cols=71  Identities=10%  Similarity=0.171  Sum_probs=52.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  584 (699)
Q Consensus       506 ~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~  584 (699)
                      ..++.|+...=+.|.-|+-++.+++..        ...|.....+++..-..+....+.|..|++++.-+|..+..+.+
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKek--------N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEK--------NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            445666666666677777777776643        44566677777777777888899999999999999998887754

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.60  E-value=22  Score=32.66  Aligned_cols=90  Identities=11%  Similarity=0.141  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378          284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE  363 (699)
Q Consensus       284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k  363 (699)
                      ..+|.+-...-|+..|...++-.+.-+.+...--.....++..+...+..       ....+.+|++.|..|++.|....
T Consensus        19 Aq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq-------~q~~vqeLqgEI~~Lnq~Lq~a~   91 (121)
T 3mq7_A           19 AVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDAS   91 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666655555544333333333444333333321       12346677777777777777777


Q ss_pred             HHHHHHHHHHHHHhHhh
Q 005378          364 GNLASLQMNMESIMRNR  380 (699)
Q Consensus       364 ~rLeelq~E~~~L~e~~  380 (699)
                      ..++.+..++.-+..++
T Consensus        92 ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           92 AEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhchhhhhHh
Confidence            77777766666555444

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=84.79  E-value=26  Score=32.86  Aligned_cols=139  Identities=17%  Similarity=0.266  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 005378          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET  385 (699)
Q Consensus       306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek  385 (699)
                      ...|++.+..++.+|+.-|.++.-.-..++           +-++.++.++..-..-...+.++.+++..++.++....+
T Consensus        13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~-----------EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~   81 (167)
T 4gkw_A           13 VADLKQDTESLQKQLEENQEELEIVGNMLR-----------EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ   81 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            345666677777777776666665544343           334455555544444455556666666666666544322


Q ss_pred             HH--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          386 RM--------IQALR-EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA  456 (699)
Q Consensus       386 e~--------lqSLE-~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s  456 (699)
                      ..        -+|+. ..|+.++..|..        +          -.--..|...+-.+.+.|..++.++.+.=.-+.
T Consensus        82 ~Lkrn~~qQnQQSlDiRKLrELEADLKE--------K----------DsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE  143 (167)
T 4gkw_A           82 LLKRNSQQQNQQSLDMRKLGELEADLKE--------K----------DSMVESLTETIGILRKELENEKLKAAENMDSFE  143 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHTHHH--------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHhHhhhhHHHHHHHHhHHhh--------h----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            20        12222 123333333310        0          111134567788899999999988888777777


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 005378          457 MLEVECATLQQELQDME  473 (699)
Q Consensus       457 mLe~dl~qLkQeLqd~e  473 (699)
                      .|.++-+.++++|.-|.
T Consensus       144 ~LkvENE~vkerl~mYR  160 (167)
T 4gkw_A          144 KLSMENENLKEKIAHYR  160 (167)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhHhHHHHHHHHH
Confidence            79999999999997663

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.23  E-value=12  Score=31.61  Aligned_cols=51  Identities=12%  Similarity=0.189  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL  402 (699)
                      ++..++..+...+.+..++..+...|+.++..++.+ +...+..|..++..|
T Consensus        21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e-ld~~ee~l~~a~~kL   71 (81)
T 1ic2_A           21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE-LDKYSESLKDAQEKL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            333333333333333344444444444333333333 333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=83.16  E-value=23  Score=31.06  Aligned_cols=54  Identities=13%  Similarity=0.129  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378          348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (699)
Q Consensus       348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL  402 (699)
                      ++..|+.|..+......+...++..++.+.......+.+ +.++...+..++..+
T Consensus         7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~e-i~sL~kKiq~lE~el   60 (101)
T 3u59_A            7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEE-QQGLQKKLKGTEDEV   60 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH
Confidence            444455555555555555555555555444444444444 444444444444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.84  E-value=11  Score=35.31  Aligned_cols=18  Identities=22%  Similarity=0.506  Sum_probs=9.6

Q ss_pred             HHHHHHHhhhhhHHHHHH
Q 005378          272 ARLARVCAGLSSRLQEYK  289 (699)
Q Consensus       272 ~qLa~~~aRLrK~~~ELk  289 (699)
                      ..|..++.-++..+.+++
T Consensus        28 e~L~~vA~~vd~km~ei~   45 (138)
T 3hnw_A           28 EYLQRVASYINNKITEFN   45 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555555555555555

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=82.28  E-value=13  Score=35.24  Aligned_cols=11  Identities=18%  Similarity=0.259  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q 005378          312 RIKQLEQELSV  322 (699)
Q Consensus       312 kl~qLQ~EL~~  322 (699)
                      ++..|+.+|..
T Consensus        53 r~~~lE~qLke   63 (147)
T 2b9c_A           53 KMEIQEIQLKE   63 (147)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=81.32  E-value=31  Score=31.35  Aligned_cols=73  Identities=18%  Similarity=0.128  Sum_probs=43.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  583 (699)
Q Consensus       506 ~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a  583 (699)
                      ..+|..|..+..++.+|+.++......++.     -..|+.|+.--.+--..--..=|.+.+|+..|..||+.+..++
T Consensus        34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-----I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           34 QQAEEALVAKQELIDKLKEEAEQHKIVMET-----VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            334455556666666666666554444432     2345555554444444444666778888888888888877654

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.05  E-value=35  Score=36.74  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378          351 SIDALKKQAALSEGNLASLQMNMES  375 (699)
Q Consensus       351 RL~~LeqeL~r~k~rLeelq~E~~~  375 (699)
                      |+++++.++..+...|..+..+.++
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          444 KVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=80.87  E-value=22  Score=30.05  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=26.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM  377 (699)
Q Consensus       340 ak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~  377 (699)
                      ....++..|..+|..++.++.....++..++..+....
T Consensus        38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A           38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667778888888888888777777776665443

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=80.05  E-value=38  Score=37.91  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005378          308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET  347 (699)
Q Consensus       308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~e  347 (699)
                      .+|.++..-|++|.+.|..-...+..+...+++.+++.+.
T Consensus         6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~   45 (497)
T 3iox_A            6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA   45 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            4455555555566555555555555444444444333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00