Citrus Sinensis ID: 005380

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
MTGGGGGESPLTPACNGGEFLLSLLQKPQQHPQAPPHQTPPQQPSLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHLGLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYVPG
ccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHcccHHHHccHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEccccEEEccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccc
ccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccHHHcccccccHHHcEEEEccccccHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHcccccHHHHccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEcEcEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHccccccccccccccEEEcccHHHcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccEEccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHccccccc
mtgggggespltpacnggEFLLSLLqkpqqhpqapphqtppqqpslpndpavaavgptinfqpqwpsngcdlpptwprtplplnflgfpqnpwasssteNQQQRLLCEDfgrlgfsnaNYAAIHNLiqqpnhqqqqnlrfgsfqvqpdsllnlnhLENLKYnldrnsqfdqprassisnpnsflhrnlensrehdlrlgkqhygstpppgfsnkarvggsgnsrrgfeHNVDMINRFTssaveggngvgltrqldrpgppsgsnlhsvsaLDIEESLLDLRREGRERhlgldkrrengpgysqggddmddfGEDLVdsllpddeselkndtherndkkhrnsrdkeirsdnrGKRLLSQRMRNLKWQIECRAdigrlnapflAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGscansfgvsksdiDVCLAindseinkSEVLLKLADILQSDNLQNVQALTRARvpivklmdpvtgiscdiCINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKsrgvnvtyQGTLSSYAYVLMCIHFLQQrrpailpclqgmektysvtvddiecayfdqvdklhgfgsrnkeSIGRLVWAFFNYWayghdyasnvisvrtgstiskqekdwtrrigndrhliciedpfevthdlgrvvDKFSIKVLREEFERAAEImqhdpnpcvklfepyvpg
mtgggggespltpACNGGEFLLSLLQKPQQHPQAPPHQTPPQQPSLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFdqprassisnpnsFLHRNLENSREHDLRLGKQHygstpppgfsnkARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGppsgsnlhsvsaLDIEESLLDLRREGRerhlgldkrrengpgysqggddmDDFGEDLVDSLlpddeselkndtherndkkhrnsrdkeirsdnrgkrllsqRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISvrtgstiskqekdwtrrigndrHLICIEdpfevthdlgrVVDKFSIKVLREEFERAaeimqhdpnpcvklfepyvpg
MTGGGGGESPLTPACNGGEFLLSLLqkpqqhpqapphqtppqqpSLPNDPAVAAVGPTINFQPQWPSNGCDlpptwprtplplNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAihnliqqpnhqqqqnlRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIeeslldlrregrerhlgldKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAeeekakqkklltlleklvckeWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYVPG
******************************************************VGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPW**********RLLCEDFGRLGFSNANYAAIHNLIQQ********LRFGSFQVQPDSLLNLNHLENLKY*******************************************************************************************************************************************************************************************************MRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF******
***************NGGEFLL******************************AAVGPTINF*****************TPLPLNFLGF*****************************************************************************************************************************************************************************************************************************************************************************************CRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYVP*
MTGGGGGESPLTPACNGGEFLLSLLQK*******************PNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPW********QQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHLGLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDE************************SDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYVPG
****************G*EFL**LLQ******************SLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQ**********************************************************************************LDRPGPPSGSNL**VSALDIEESLLDL***********************************************************************R*******RMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYV**
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MTGGGGGESPLTPACNGGEFLLSLLQKPQQHPQAPPHQTPPQQPSLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHLGLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYVPG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query699 2.2.26 [Sep-21-2011]
O74326 478 Poly(A) RNA polymerase ci yes no 0.420 0.615 0.361 8e-52
Q9UT49 578 Poly(A) RNA polymerase ci no no 0.443 0.536 0.318 3e-47
Q5VYS8 1495 Terminal uridylyltransfer yes no 0.397 0.185 0.345 8e-44
Q5TAX3 1644 Terminal uridylyltransfer no no 0.406 0.172 0.348 1e-43
B2RX14 1644 Terminal uridylyltransfer yes no 0.406 0.172 0.348 1e-43
O13833405 Poly(A) RNA polymerase pr no no 0.439 0.758 0.319 4e-42
Q5BLK4 1491 Terminal uridylyltransfer no no 0.396 0.185 0.337 5e-42
Q6DFA8509 Poly(A) RNA polymerase GL N/A no 0.381 0.524 0.320 1e-38
Q0VFA3528 Poly(A) RNA polymerase GL no no 0.381 0.505 0.320 6e-38
Q641A1509 Poly(A) RNA polymerase GL N/A no 0.379 0.520 0.341 9e-38
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1 Back     alignment and function desciption
 Score =  205 bits (522), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 186/315 (59%), Gaps = 21/315 (6%)

Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARL--YLYGSCANSFGVSKSDIDVCLAI 441
           +Y  L P+ EE +++++ +  L  ++  E  DA+L  +++GS  N+  + +SD+DVC+  
Sbjct: 54  LYMRLKPSNEEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNLAIQQSDVDVCIIT 113

Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
           N S+   S    +LA +L S  ++ +  ++RARVPIVK+ DP   I CD+ INN +A +N
Sbjct: 114 NGSKYLNSTC--QLAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKIN 171

Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGV-NVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
           TK+LR +  ID R++ L  I+K+WAK R + +    GT++SY    M ++FLQ R P IL
Sbjct: 172 TKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPIL 231

Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSR---NKESIGRLVWAFFNYWAYGHDYA 617
           P +  +     ++ DD +      VD + GF  +   NK S+GRL+  FF Y+ +  +Y 
Sbjct: 232 PAMLDL-----MSNDDNKMF----VDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYL 282

Query: 618 SNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFER 677
            +V+SVR+G+ ++KQEK W   + N    +C+E+PF    +L    D  S+K L+ EF+R
Sbjct: 283 DSVVSVRSGTVLNKQEKGWAMEVNNS---LCVEEPFNTARNLANTADNPSVKGLQSEFQR 339

Query: 678 AAEIMQHDPNPCVKL 692
           A  +M  + N C +L
Sbjct: 340 AFRLMSEN-NACERL 353

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid13 PE=1 SV=1 Back     alignment and function description
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1 Back     alignment and function description
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3 Back     alignment and function description
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2 Back     alignment and function description
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2 Back     alignment and function description
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3 Back     alignment and function description
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1 SV=1 Back     alignment and function description
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2 SV=1 Back     alignment and function description
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query699
317106636748 JHL05D22.13 [Jatropha curcas] 0.967 0.903 0.613 0.0
147782453720 hypothetical protein VITISV_006352 [Viti 0.932 0.905 0.586 0.0
18406841764 nucleotidyltransferase-like protein [Ara 0.975 0.892 0.549 0.0
255541382696 poly(A) polymerase cid, putative [Ricinu 0.895 0.899 0.578 0.0
297824611757 hypothetical protein ARALYDRAFT_483698 [ 0.979 0.904 0.539 0.0
296089114 989 unnamed protein product [Vitis vinifera] 0.678 0.479 0.692 0.0
356522696732 PREDICTED: uncharacterized protein LOC10 0.961 0.918 0.548 0.0
356506330731 PREDICTED: uncharacterized protein LOC10 0.954 0.912 0.538 0.0
449454502763 PREDICTED: uncharacterized protein LOC10 0.961 0.880 0.510 0.0
359489515679 PREDICTED: uncharacterized protein LOC10 0.874 0.899 0.535 0.0
>gi|317106636|dbj|BAJ53142.1| JHL05D22.13 [Jatropha curcas] Back     alignment and taxonomy information
 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/769 (61%), Positives = 541/769 (70%), Gaps = 93/769 (12%)

Query: 1   MTGGGGGESPLTPACNGGEFLLSLLQKPQ---QHPQAPPHQTPP---------------- 41
           M GGG    P+ PA NGGEFLLSLLQ+P    Q P  PPH   P                
Sbjct: 1   MNGGGADAPPMQPAVNGGEFLLSLLQRPNHQLQTPAPPPHSQLPIPIPITPQQYQQQQQQ 60

Query: 42  -QQPSLPNDPAVAAVGPTINF-QPQWPSNGCD-LPPTWPR----TPLPLNFLGFPQNPW- 93
            QQ SL  DPAVAAVGP++ F QP W SNG D L P WP      PL   FLGFPQN W 
Sbjct: 61  QQQQSLALDPAVAAVGPSLPFSQPVWQSNGRDVLTPPWPHNLSAAPLLPGFLGFPQNHWP 120

Query: 94  ------ASSSTENQQQRLLCEDFGRLGFSNANYAA---IHNLIQQPNHQQQQNLRFGSFQ 144
                 A+   +  QQ +L +D   LGFS A+  A   IHN +QQ   Q +Q L+FGSF+
Sbjct: 121 SPANHLAAGQFQGNQQGVLGDDLQILGFSGADVRANNTIHNRVQQ-KQQLEQKLQFGSFR 179

Query: 145 VQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLR------- 197
                + N+  L N+   L+   + +   A+   N      +     R  DLR       
Sbjct: 180 ---SDIQNVEALLNVNSKLNAAKELEVRLATRNLNGLESDQKFDSQLRTFDLREQDRSGG 236

Query: 198 -LGKQHYGS--------TPPPGFSNKARVGGSGN---SRRGFEHNV--------DMINR- 236
              KQ +G          PPPGFSNK R GG+ +    RR  ++NV        ++ NR 
Sbjct: 237 GWRKQPHGGNYRPQETRMPPPGFSNKPRGGGNWDYVSRRRELDYNVNKEKGNQGELSNRN 296

Query: 237 --FTSSAVEGGNG-----VGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHL 289
             F+S      +G     +GLT QLDRPGPP+GSNL+SVSA D+E S+L++  E  E   
Sbjct: 297 ALFSSEDKIPRDGDRSRDLGLTGQLDRPGPPAGSNLYSVSAADVELSMLNVEAEVVED-- 354

Query: 290 GLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRS 349
           G D+ RE           +D+ GE+LVDSLL + ES+ KND      K++R+SR+KE RS
Sbjct: 355 GKDEGRE-----------LDEAGEELVDSLLLEGESDGKNDK-----KQNRHSREKESRS 398

Query: 350 DNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLV 409
           DNRG+R LSQRMR LK Q+ECR DI RLNAPFLAIYESL+P EEEKAKQK+LL+LLEKLV
Sbjct: 399 DNRGQRTLSQRMRMLKRQMECRRDIDRLNAPFLAIYESLVPPEEEKAKQKQLLSLLEKLV 458

Query: 410 CKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQA 469
            KEWP ARLYLYGSCANSFGV KSDIDVCLAI +++INKSEVLLKLADILQSDNLQNVQA
Sbjct: 459 NKEWPQARLYLYGSCANSFGVLKSDIDVCLAIQNADINKSEVLLKLADILQSDNLQNVQA 518

Query: 470 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSR 529
           LTRARVPIVKLMDPVTGISCDICINN+LAVVNTKLL DYAQIDVRL+QLAFIVKHWAKSR
Sbjct: 519 LTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLWDYAQIDVRLRQLAFIVKHWAKSR 578

Query: 530 GVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLH 589
           GVN TY GTLSSYAYVLMCIHFLQQRRPAILPCLQ ME TYSV VDDI+CAYFDQV+KL 
Sbjct: 579 GVNETYHGTLSSYAYVLMCIHFLQQRRPAILPCLQEMEATYSVAVDDIQCAYFDQVEKLR 638

Query: 590 GFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICI 649
           GFGSRNKE+I +LVWAFFNYWAY HDYA+ VIS+RTGS ISK+EKDWTRRIGNDRHLICI
Sbjct: 639 GFGSRNKETIAQLVWAFFNYWAYRHDYANAVISIRTGSIISKREKDWTRRIGNDRHLICI 698

Query: 650 EDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFEPYVP 698
           EDPFE++HDLGRVVDK+SIKVLREEFERAA+IMQ+DPNPCV LFEPYVP
Sbjct: 699 EDPFEISHDLGRVVDKYSIKVLREEFERAADIMQYDPNPCVTLFEPYVP 747

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147782453|emb|CAN77386.1| hypothetical protein VITISV_006352 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18406841|ref|NP_566048.1| nucleotidyltransferase-like protein [Arabidopsis thaliana] gi|13430538|gb|AAK25891.1|AF360181_1 unknown protein [Arabidopsis thaliana] gi|14532746|gb|AAK64074.1| unknown protein [Arabidopsis thaliana] gi|20197056|gb|AAC06161.2| expressed protein [Arabidopsis thaliana] gi|330255483|gb|AEC10577.1| nucleotidyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255541382|ref|XP_002511755.1| poly(A) polymerase cid, putative [Ricinus communis] gi|223548935|gb|EEF50424.1| poly(A) polymerase cid, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297824611|ref|XP_002880188.1| hypothetical protein ARALYDRAFT_483698 [Arabidopsis lyrata subsp. lyrata] gi|297326027|gb|EFH56447.1| hypothetical protein ARALYDRAFT_483698 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296089114|emb|CBI38817.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522696|ref|XP_003529982.1| PREDICTED: uncharacterized protein LOC100812787 [Glycine max] Back     alignment and taxonomy information
>gi|356506330|ref|XP_003521938.1| PREDICTED: uncharacterized protein LOC100818029 [Glycine max] Back     alignment and taxonomy information
>gi|449454502|ref|XP_004144993.1| PREDICTED: uncharacterized protein LOC101204551 [Cucumis sativus] gi|449521808|ref|XP_004167921.1| PREDICTED: uncharacterized LOC101204551 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359489515|ref|XP_002272342.2| PREDICTED: uncharacterized protein LOC100267790 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query699
TAIR|locus:2043669764 AT2G45620 [Arabidopsis thalian 0.680 0.623 0.626 2e-173
DICTYBASE|DDB_G02784251090 DDB_G0278425 [Dictyostelium di 0.387 0.248 0.424 3.2e-64
UNIPROTKB|Q2KEW4 1474 MGCH7_ch7g922 "Putative unchar 0.377 0.179 0.384 6.2e-51
POMBASE|SPBC1685.06 478 cid11 "poly(A) polymerase Cid1 0.376 0.550 0.380 5.4e-47
POMBASE|SPAC821.04c 578 cid13 "poly(A) polymerase Cid1 0.376 0.455 0.339 4e-42
POMBASE|SPAC19D5.03405 cid1 "poly(A) polymerase Cid1" 0.396 0.683 0.344 1.2e-40
UNIPROTKB|Q5VYS8 1495 ZCCHC6 "Terminal uridylyltrans 0.346 0.161 0.370 1e-36
UNIPROTKB|Q641A1509 papd4-a "Poly(A) RNA polymeras 0.379 0.520 0.332 2.3e-36
UNIPROTKB|E1BAR2 1498 ZCCHC6 "Uncharacterized protei 0.346 0.161 0.366 2.7e-36
UNIPROTKB|E2RM29 1497 ZCCHC6 "Uncharacterized protei 0.346 0.161 0.366 3.1e-35
TAIR|locus:2043669 AT2G45620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1544 (548.6 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
 Identities = 303/484 (62%), Positives = 352/484 (72%)

Query:   221 GNSRRGFEHNVDM---INRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIXXXX 277
             G   + +  +VD     NR    +++  +   L++Q+D PGPP G++LHSVSA D     
Sbjct:   274 GEHSKVWNQSVDFSAEANRLRGLSIQNESKFNLSQQIDHPGPPKGASLHSVSAADAADSF 333

Query:   278 XXXXXXXXXXXXXXXKRRENGPGYSQGG---DDMDDFGEDLVDSLLPDDESELKNDTHER 334
                            +  +      +G    D+++DFGED+V SLL +DE+  K+    +
Sbjct:   334 SMLNKEARRGGERREELGQLSKAKREGNANSDEIEDFGEDIVKSLLLEDETGEKDANDGK 393

Query:   335 NDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAXXX 394
              D K   SR+KE R DNRG+RLL Q+ R +K  + CR DI R +A F+AIY+SLIPA   
Sbjct:   394 KDSK--TSREKESRVDNRGQRLLGQKARMVKMYMACRNDIHRYDATFIAIYKSLIPAEEE 451

Query:   395 XXXXXXXXXXXXXXXXXXWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLK 454
                               WP A+LYLYGSCANSFG  KSDIDVCLAI   +INKSE+LLK
Sbjct:   452 LEKQRQLMAHLENLVAKEWPHAKLYLYGSCANSFGFPKSDIDVCLAIEGDDINKSEMLLK 511

Query:   455 LADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVR 514
             LA+IL+SDNLQNVQALTRARVPIVKLMDPVTGISCDICINN+LAVVNTKLLRDYAQIDVR
Sbjct:   512 LAEILESDNLQNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDYAQIDVR 571

Query:   515 LQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTV 574
             L+QLAFIVKHWAKSR VN TYQGTLSSYAYVLMCIHFLQQRRP ILPCLQ ME TYSV V
Sbjct:   572 LRQLAFIVKHWAKSRRVNETYQGTLSSYAYVLMCIHFLQQRRPPILPCLQEMEPTYSVRV 631

Query:   575 DDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEK 634
             D+I C YFD VD+L  FGS N+E+I  LVW FFNYWAY HDYA NV+SVRTGS + K+EK
Sbjct:   632 DNIRCTYFDNVDRLRNFGSNNRETIAELVWGFFNYWAYAHDYAYNVVSVRTGSILGKREK 691

Query:   635 DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLFE 694
             DWTRR+GNDRHLICIEDPFE +HDLGRVVDKFSI+VLREEFERAA IM  DPNPC KL E
Sbjct:   692 DWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVLREEFERAARIMHQDPNPCAKLLE 751

Query:   695 PYVP 698
             PY+P
Sbjct:   752 PYIP 755
GO:0005634 "nucleus" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
DICTYBASE|DDB_G0278425 DDB_G0278425 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KEW4 MGCH7_ch7g922 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPBC1685.06 cid11 "poly(A) polymerase Cid11 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC821.04c cid13 "poly(A) polymerase Cid13" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC19D5.03 cid1 "poly(A) polymerase Cid1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VYS8 ZCCHC6 "Terminal uridylyltransferase 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q641A1 papd4-a "Poly(A) RNA polymerase GLD2-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAR2 ZCCHC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RM29 ZCCHC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026303001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (720 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
COG5260 482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 2e-50
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 2e-37
pfam0382859 pfam03828, PAP_assoc, Cid1 family poly A polymeras 2e-18
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 5e-06
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 3e-05
PTZ00418 593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 3e-05
pfam02948174 pfam02948, Amelogenin, Amelogenin 1e-04
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 2e-04
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.004
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  183 bits (465), Expect = 2e-50
 Identities = 102/365 (27%), Positives = 170/365 (46%), Gaps = 32/365 (8%)

Query: 329 NDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESL 388
           N + E  ++       KE R  +  K  + + +  L        +   L +  L  Y+ +
Sbjct: 12  NSSSE--EEFETIMEQKERRPLDAKKVSIQELL-ELSIDSVFNEESDELTSELLEFYDYI 68

Query: 389 IPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDS-EIN 447
            P++EE  ++K LL  L  L+ KE+PDA L ++GS      + KSDID+C+  +      
Sbjct: 69  APSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKE 128

Query: 448 KSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRD 507
                   + + + +  + V  ++ ARVPI+KL+DP +G+ CDI  NN   +VN KL+R 
Sbjct: 129 TRNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRS 188

Query: 508 YAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGME 567
           Y + D RL+ L  I+KHW K R +N    GTLSSY    M + FLQ   P +        
Sbjct: 189 YLKEDPRLRPLVLIIKHWLKRRALNDVATGTLSSYTISCMVLSFLQMHPPFLF------- 241

Query: 568 KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGS 627
                         FD         ++N +++G L   FF  +    +Y+  V+S+ +G 
Sbjct: 242 --------------FDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSINSGD 287

Query: 628 TI-SKQEKDWTRRIGNDRHLICIEDPF-EVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 685
               K EK W +   +  + + I+DP  +  +D+      F+IK ++  F RA E++  +
Sbjct: 288 FYLPKYEKGWLKP--SKPNSLSIQDPGTDRNNDISA--VSFNIKDIKAAFIRAFELL-SN 342

Query: 686 PNPCV 690
               +
Sbjct: 343 KLFTL 347

Length = 482
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|217750 pfam03828, PAP_assoc, Cid1 family poly A polymerase Back     alignment and domain information
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 699
COG5260 482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906 514 consensus DNA polymerase sigma [Replication, recom 100.0
PTZ00418 593 Poly(A) polymerase; Provisional 100.0
KOG2277 596 consensus S-M checkpoint control protein CID1 and 99.97
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 99.97
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.91
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.89
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.88
TIGR03671 408 cca_archaeal CCA-adding enzyme. 99.75
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 99.73
COG1746 443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.65
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 99.34
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 98.59
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.38
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.27
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 98.13
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.95
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.95
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.66
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 97.59
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 97.35
COG166997 Predicted nucleotidyltransferases [General functio 97.07
COG1708128 Predicted nucleotidyltransferases [General functio 96.99
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.93
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 95.96
PRK13746262 aminoglycoside resistance protein; Provisional 95.75
PF14091152 DUF4269: Domain of unknown function (DUF4269) 95.72
KOG3793362 consensus Transcription factor NFAT, subunit NF45 94.97
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 92.94
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 91.06
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 88.44
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 88.1
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 87.69
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-47  Score=413.72  Aligned_cols=291  Identities=33%  Similarity=0.568  Sum_probs=250.9

Q ss_pred             cchhhhhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCc-cch
Q 005380          370 CRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE-INK  448 (699)
Q Consensus       370 c~~did~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~-i~k  448 (699)
                      -..+.+.|+.+|.++|.+++|+.+|.+.|+.++++|+.++.+.||++.+++|||+.+|+++|.|||||||..+... ...
T Consensus        50 ~~~~~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~et  129 (482)
T COG5260          50 FNEESDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKET  129 (482)
T ss_pred             hhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCcccccc
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999885422 222


Q ss_pred             HHHHHHHHHHHhcCCCcceEEeeeeeeceEEEecccCCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHHHHh
Q 005380          449 SEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKS  528 (699)
Q Consensus       449 ~e~L~kLa~iL~s~~~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~  528 (699)
                      ......+..++...++..++++.+||||||||+++.+++.|||+|++..|+.++++++.|...+|++|+|+++||+|+++
T Consensus       130 ~~~~~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~~~~~~P~lrpLvliIKhwl~~  209 (482)
T COG5260         130 RNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRSYLKEDPRLRPLVLIIKHWLKR  209 (482)
T ss_pred             ccHHHHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence            22233444555667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHH
Q 005380          529 RGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN  608 (699)
Q Consensus       529 rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~  608 (699)
                      |.|++++.|||+||++++||+.|||++.|.  +.++..           .      ..++  +...+..++|.||.+||+
T Consensus       210 R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~--~~~~~~-----------~------~~~l--~~~~~~~~lgvLf~dFf~  268 (482)
T COG5260         210 RALNDVATGTLSSYTISCMVLSFLQMHPPF--LFFDNG-----------L------LSPL--KYNKNIDNLGVLFDDFFE  268 (482)
T ss_pred             HhhcccccCcchhhhhHHHHHHHHHhCCcc--cccccc-----------c------cchh--hccccccccchHHHHHHH
Confidence            999999999999999999999999998431  111110           0      0000  123456789999999999


Q ss_pred             HhhcCCCCCCcEEEecCC-cccccccccccccCCCCCcceEEecCC-CCCCCccccCCHhhHHHHHHHHHHHHHHhhcC
Q 005380          609 YWAYGHDYASNVISVRTG-STISKQEKDWTRRIGNDRHLICIEDPF-EVTHDLGRVVDKFSIKVLREEFERAAEIMQHD  685 (699)
Q Consensus       609 yYs~~FD~~~~vISIr~G-~~isK~ek~w~~~~g~~~~~L~IeDPf-dp~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~~  685 (699)
                      ||+..|+|...+|+++.| .+++|.++.|.....  +..||||||+ +.++++++.  ..++..|+.+|.+|+++|.+.
T Consensus       269 ~yG~~f~Y~~~~~si~~g~~~~~K~e~g~~~~~~--p~~LsiqdP~td~n~~~~a~--s~~ik~i~~~F~~aF~lls~~  343 (482)
T COG5260         269 LYGKSFNYSLVVLSINSGDFYLPKYEKGWLKPSK--PNSLSIQDPGTDRNNDISAV--SFNIKDIKAAFIRAFELLSNK  343 (482)
T ss_pred             HhccccChhheEEEecCCceeeehhhcccccccC--CCcEeecCCCCCcccccccc--cchHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999 899999988876433  4789999999 888888887  789999999999999999964

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
4e7x_A405 Structural Basis For The Activity Of A Cytoplasmic 2e-42
4fh3_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 2e-42
4ep7_A340 Functional Implications From The Cid1 Poly(U) Polym 3e-42
4fhx_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 2e-41
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 5e-14
3pq1_A464 Crystal Structure Of Human Mitochondrial Poly(A) Po 7e-14
2ikf_A353 Terminal Uridylyl Transferase 4 From Trypanosoma Br 8e-12
3hj1_A387 Minor Editosome-Associated Tutase 1 With Bound Utp 1e-10
3hiy_B384 Minor Editosome-Associated Tutase 1 With Bound Utp 2e-09
2b51_A468 Structural Basis For Utp Specificity Of Rna Editing 6e-08
2b4v_A468 Structural Basis For Utp Specificity Of Rna Editing 3e-06
>pdb|4E7X|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna Terminal U- Transferase Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 22/299 (7%)
Query: 414 PDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRA 473
           PDA L  +GS  +   +  SD+D+C+ + DS +    + L+  + L ++  +  + L RA
Sbjct: 81  PDAELVAFGSLESGLALKNSDMDLCVLM-DSRVQSDTIALQFYEELIAEGFEG-KFLQRA 138
Query: 474 RVPIVKLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKS 528
           R+PI+KL             CDI  NN LA+ NT LL  Y ++D RL+ +  +VKHWAK 
Sbjct: 139 RIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKR 198
Query: 529 RGVNVTYQGTLSSYAYVLMCIHFL-QQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDK 587
           + +N  Y GTLSSY YVLM +++L    +P + P L          VD  +  + D+++ 
Sbjct: 199 KQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED 258
Query: 588 LHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRT-GSTISKQEKDWTR-------- 638
           +    S+N  S+G L+  FF ++AY  +    V++ R     ++KQEK WT         
Sbjct: 259 IP--PSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSA 316
Query: 639 -RIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIM--QHDPNPCVKLFE 694
            +I  DR+++ IEDPFE++H++GR V    +  +R EF  A+ ++  +  P P   LFE
Sbjct: 317 DQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFE 375
>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity Length = 349 Back     alignment and structure
>pdb|4EP7|A Chain A, Functional Implications From The Cid1 Poly(U) Polymerase Crystal Structure Length = 340 Back     alignment and structure
>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity - H336n Mutant Bound To Mgatp Length = 349 Back     alignment and structure
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A) Polymerase (Papd1) Length = 464 Back     alignment and structure
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei With Bound Utp Length = 353 Back     alignment and structure
>pdb|3HJ1|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp Length = 387 Back     alignment and structure
>pdb|3HIY|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg Length = 384 Back     alignment and structure
>pdb|2B51|A Chain A, Structural Basis For Utp Specificity Of Rna Editing Tutases From Trypanosoma Brucei Length = 468 Back     alignment and structure
>pdb|2B4V|A Chain A, Structural Basis For Utp Specificity Of Rna Editing Tutases From Trypanosoma Brucei Length = 468 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 2e-89
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 4e-88
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 3e-77
2b4v_A 468 RNA editing complex protein MP57; tbret2, TBMP57, 2e-05
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 2e-76
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 1e-75
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-73
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 1e-63
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 2e-31
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 6e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
 Score =  284 bits (728), Expect = 2e-89
 Identities = 105/370 (28%), Positives = 179/370 (48%), Gaps = 22/370 (5%)

Query: 347 IRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLE 406
              +   +   +  +       +              +Y  +  +++E  +++  L  L 
Sbjct: 14  TVEEIEAEIHKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLR 73

Query: 407 KLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQN 466
             + +  PDA L  +GS  +   +  SD+D+C+ + DS +    + L+  + L ++  + 
Sbjct: 74  LCLKRISPDAELVAFGSLESGLALKNSDMDLCV-LMDSRVQSDTIALQFYEELIAEGFE- 131

Query: 467 VQALTRARVPIVKLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFI 521
            + L RAR+PI+KL             CDI  NN LA+ NT LL  Y ++D RL+ +  +
Sbjct: 132 GKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLL 191

Query: 522 VKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ-QRRPAILPCLQGMEKTYSVTVDDIECA 580
           VKHWAK + +N  Y GTLSSY YVLM +++L    +P + P L          VD  +  
Sbjct: 192 VKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVG 251

Query: 581 YFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST-ISKQEKDWTR- 638
           + D+++ +    S+N  S+G L+  FF ++AY  +    V++ R     ++KQEK WT  
Sbjct: 252 FDDKLEDI--PPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSA 309

Query: 639 --------RIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQH--DPNP 688
                   +I  DR+++ IEDPFE++H++GR V    +  +R EF  A+ ++     P P
Sbjct: 310 TEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIP 369

Query: 689 CVKLFEPYVP 698
              LFE    
Sbjct: 370 YDSLFEEAPI 379
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query699
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 100.0
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.62
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.44
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.55
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.75
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.68
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.65
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.17
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.02
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 96.24
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 95.9
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 93.19
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 89.91
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 87.97
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 80.94
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
Probab=100.00  E-value=8.6e-63  Score=538.83  Aligned_cols=322  Identities=32%  Similarity=0.562  Sum_probs=292.9

Q ss_pred             chhhhhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccchHH
Q 005380          371 RADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSE  450 (699)
Q Consensus       371 ~~did~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e  450 (699)
                      ..++++|+.+|.++|+++.||++|.+.|++++++|+++|++.||+++|++|||+++|+++|+|||||+|..+... ...+
T Consensus        38 ~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~-~~~~  116 (405)
T 4e8f_A           38 PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-QSDT  116 (405)
T ss_dssp             CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC----CTT
T ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCC-CHHH
Confidence            345778999999999999999999999999999999999999999999999999999999999999999886521 2234


Q ss_pred             HHHHHHHHHhcCCCcceEEeeeeeeceEEEe-cccC----CeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHH
Q 005380          451 VLLKLADILQSDNLQNVQALTRARVPIVKLM-DPVT----GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHW  525 (699)
Q Consensus       451 ~L~kLa~iL~s~~~~~V~~I~~ARVPIIKf~-d~~t----gI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~W  525 (699)
                      ++.++++.|++. ..++..|.+||||||||+ |+.+    |++|||||+|..|+.+|.+++.|.+.+|++|+|+++||+|
T Consensus       117 ~l~~l~~~L~~~-~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~w  195 (405)
T 4e8f_A          117 IALQFYEELIAE-GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHW  195 (405)
T ss_dssp             HHHHHHHHHHHT-TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            788899999877 668899999999999999 8888    9999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccCCCCChHHHHHHHHHHh-hhcCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHH
Q 005380          526 AKSRGVNVTYQGTLSSYAYVLMCIHFL-QQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW  604 (699)
Q Consensus       526 ak~rgLn~~~~GgLSSYaL~LMVI~FL-Q~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl  604 (699)
                      |+.++|++++.||||||+|++|||+|| |...|++||+||++.......+++|+|.|.+++..  .++..|..++|+||+
T Consensus       196 ak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~--~~~~~n~~slg~LL~  273 (405)
T 4e8f_A          196 AKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED--IPPSQNYSSLGSLLH  273 (405)
T ss_dssp             HHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGG--SCCCSCCCCHHHHHH
T ss_pred             HHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhh--hccccccccHHHHHH
Confidence            999999999999999999999999999 77889999999999888788899999999887542  366778899999999


Q ss_pred             HHHHHhhcCCCCCCcEEEec-CCcccccccccccccC---------CCCCcceEEecCCCCCCCccccCCHhhHHHHHHH
Q 005380          605 AFFNYWAYGHDYASNVISVR-TGSTISKQEKDWTRRI---------GNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREE  674 (699)
Q Consensus       605 ~FF~yYs~~FD~~~~vISIr-~G~~isK~ek~w~~~~---------g~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~e  674 (699)
                      +||+||+.+|||.+.+||++ .|++++|.++.|.+..         ...++.|||+|||++++|+||+|+..++..|+++
T Consensus       274 ~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~e  353 (405)
T 4e8f_A          274 GFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGE  353 (405)
T ss_dssp             HHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHH
Confidence            99999998899999999999 7889999888997641         1346789999999999999999999999999999


Q ss_pred             HHHHHHHhhcC--CCccccccccC
Q 005380          675 FERAAEIMQHD--PNPCVKLFEPY  696 (699)
Q Consensus       675 F~rA~~iL~~~--~n~~~~LfeP~  696 (699)
                      |++|+++|++.  .++|.+||+|+
T Consensus       354 F~rA~~iL~~~~~~~~w~~Lf~~~  377 (405)
T 4e8f_A          354 FMAASRLLNSRSYPIPYDSLFEEA  377 (405)
T ss_dssp             HHHHHHHHTCSSSSCCGGGGGSCC
T ss_pred             HHHHHHHHhhhccCCCHHHHhCcC
Confidence            99999999998  68999999986
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 699
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 5e-39
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 4e-18
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 4e-18
d1no5a_100 d.218.1.5 (A:) Hypothetical protein HI0073 {Haemop 7e-05
d1ylqa190 d.218.1.5 (A:1-90) Putative nucleotidyltransferase 0.001
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score =  140 bits (353), Expect = 5e-39
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 514 RLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVT 573
             +  A  VK W K+  V       L+SYA  +M I++L   R  +              
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPW--------- 53

Query: 574 VDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQE 633
                 A+  +          +   +GRL+  FF ++A+  DY   V+S+       + +
Sbjct: 54  -SLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSD 112

Query: 634 KDWTRRIGND---RHLICIEDPFE----VTHDLGRVVDKFSIKVLREEFERAAEIMQH 684
             W           +  CIEDP+E       +L R +     +++++EF RAA+ M+ 
Sbjct: 113 IGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMER 170
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Length = 100 Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query699
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.96
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.79
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.75
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.75
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.74
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.43
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.41
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.37
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 98.35
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 98.11
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.24
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 97.23
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 97.01
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 96.45
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 94.87
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 94.48
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 94.39
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 91.24
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=1.6e-30  Score=250.30  Aligned_cols=162  Identities=25%  Similarity=0.406  Sum_probs=127.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccccccceeecCcccccccchhhhcCCC
Q 005380          513 VRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFG  592 (699)
Q Consensus       513 Pr~r~LvllLK~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g  592 (699)
                      |++|+|+++||+|||.++|++++.|+||||+|++|||+|||.+.++++|..++...........          ....+.
T Consensus         2 P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~   71 (183)
T d2b4va1           2 VAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYP----------DFSPLY   71 (183)
T ss_dssp             TTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSC----------CCCCCC
T ss_pred             cceeeHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhcccccccccc----------cccccc
Confidence            7899999999999999999999999999999999999999998888888776653321111000          011234


Q ss_pred             CCCcccHHHHHHHHHHHhhcCCCCCCcEEEecCCcccccccccccccC---CCCCcceEEecCCCC----CCCccccCCH
Q 005380          593 SRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRI---GNDRHLICIEDPFEV----THDLGRVVDK  665 (699)
Q Consensus       593 ~~n~~SLgeLLl~FF~yYs~~FD~~~~vISIr~G~~isK~ek~w~~~~---g~~~~~L~IeDPfdp----~~NlgrsVs~  665 (699)
                      ..+..+||+||.+||+||+.+|||.+.+|+++.|..++|....|....   ....+.|+|+|||++    ++|+||+++.
T Consensus        72 ~~~~~sl~~Ll~~FF~~Y~~~fd~~~~~Isi~~g~~~~k~~~~~~~~~~~~~~~~~~l~IeDPfd~~~~~~~Nv~r~v~~  151 (183)
T d2b4va1          72 DCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHP  151 (183)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCH
T ss_pred             CCCCCCHHHHHHHHHHHhccccCHHHceeeeccCCccchhhhhccccccCCCCCCcceEEeCCCccccccccchhhhcCH
Confidence            567789999999999999988999999999999998888776664321   223467999999986    5788888888


Q ss_pred             hhHHHHHHHHHHHHHHhhc
Q 005380          666 FSIKVLREEFERAAEIMQH  684 (699)
Q Consensus       666 ~~i~~Ir~eF~rA~~iL~~  684 (699)
                      .++..|+++|++|+++|++
T Consensus       152 ~~~~~I~~~f~~a~~~l~~  170 (183)
T d2b4va1         152 AKFQLVKQEFLRAAQCMER  170 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure