Citrus Sinensis ID: 005392

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70

MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

cEEcccccccHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHcccccccHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEEEEEccccEEEEEEcccccccHHHHHccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHcccccEEEEccEEEccccccccccEEEEEc

ccHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEEccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccHHHHHEHEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccEEEEccccccEEEEEEcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEcccEEEEEcccEEEEEEEEEcccccEEEEEEEccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEEccccccccHHHcccccccEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEcccccEEEEcccHHHHHHHHHHccccEEEEEccEEEccccEcccccEEEEEc

mlipssgkravDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRrinvnqgtlgheeaNDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasddesftTFDEHVLSMKDLLEAvvpfdilsDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIStsyipgmeVTLSSRLKSLYSIFSKmrrkdvgihkvydARALRVVvgdkngtlhgpaiQCCYSLLDIVHrlwipidgefddyivnpkpsgyqslhtavqgpdgsalEVQIRTQKMHEYAEHGLAAHWLYKetgnklqsissmdesdieassslskdtddhnpldtdlfqkysslkmghpvirveGSNLLAAVIIRVEKGGRELLVAVSFGLAASevvadrrpsfqiKCWEAYARLYKKasdewwcqpghgdwctclekytlcrdgmyhkqdqfgrlLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeaSINNKVRLLRTMLRWEEQLRSEASLRQSklggkangnpdsvvpgevvivcwpngeimrlrsgstaADAAMKVGLEGKLVLVNgqlvlpntelkdgdivevrv

mlipssgkraVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRrinvnqgtlgheeaNDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasdDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDlaksseaqkkaKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSkmrrkdvgihkvydARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSslskdtddhnpLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGlaasevvadrrpsfQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeasinnkVRLLRTMLRWEEQLRSEASLrqsklggkangnpdsvvpGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGqlvlpntelkdgdivevrv

MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPvdsvvsrrssdsvAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

**********VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV****************TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLH************KVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA*******ALEVQIRTQKMHEYAEHGLAAHWLYKE***********************************LFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK**************************VRLLRTMLRW*************************VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTEL**********

MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL******************NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK****************************DHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVV******FQ*KCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF*****************************************************************VPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

********RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS**********DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS********************DHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVD***************MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEG**********************SINNKVRLLRTMLRWEEQLRSEASL**SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		698	2.2.26 [Sep-21-2011]
P74007		760	Probable guanosine-3',5'-	N/A	no	0.193	0.177	0.455	5e-28
P0A0E9		736	GTP pyrophosphokinase OS=	yes	no	0.196	0.186	0.416	7e-28
P0A0F0		736	GTP pyrophosphokinase OS=	yes	no	0.196	0.186	0.416	7e-28
Q6G8T5		736	GTP pyrophosphokinase OS=	yes	no	0.196	0.186	0.416	7e-28
Q99TL8		736	GTP pyrophosphokinase OS=	yes	no	0.196	0.186	0.416	7e-28
Q931Q4		736	GTP pyrophosphokinase OS=	yes	no	0.196	0.186	0.416	8e-28
Q6GG70		736	GTP pyrophosphokinase OS=	yes	no	0.196	0.186	0.416	8e-28
O54408		734	GTP pyrophosphokinase OS=	yes	no	0.166	0.158	0.472	1e-27
Q8CS97		729	GTP pyrophosphokinase OS=	yes	no	0.180	0.172	0.427	1e-27
Q5HNR8		729	GTP pyrophosphokinase OS=	yes	no	0.180	0.172	0.427	1e-27

>sp\|P74007\|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1	Back alignment and function desciption

 Score =  126 bits (317), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 90/147 (61%), Gaps = 12/147 (8%)

Query: 14  VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
           + AG LHDVV+D   S+  IE  FG+E A LV GV++LS              N  +   
Sbjct: 97  IAAGFLHDVVEDTDISIEQIEALFGEETASLVEGVTKLS------------KFNFSSTTE 144

Query: 74  EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
            +A + R M L M  D RV+++KLADRLHNMRT+ AL P K R +A+ET  I+  LA+RL
Sbjct: 145 HQAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRL 204

Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRA 160
           G+W  K ELEDL F  L+P  +RK+++
Sbjct: 205 GIWRFKWELEDLSFKYLEPDSYRKIQS 231

In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2

>sp\|P0A0E9\|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|P0A0F0\|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q6G8T5\|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q99TL8\|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2	Back alignment and function description

>sp\|Q931Q4\|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2	Back alignment and function description

>sp\|Q6GG70\|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|O54408\|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3	Back alignment and function description

>sp\|Q8CS97\|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q5HNR8\|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		698
297737338		868	unnamed protein product [Vitis vinifera]	1.0	0.804	0.777	0.0
357481159		889	GTP pyrophosphokinase [Medicago truncatu	0.997	0.782	0.710	0.0
449483240		875	PREDICTED: uncharacterized LOC101208449	0.994	0.793	0.738	0.0
449439043		706	PREDICTED: uncharacterized protein LOC10	0.984	0.973	0.740	0.0
255557973		806	guanosine-3',5'-bis(diphosphate) 3'-pyro	0.916	0.794	0.737	0.0
225454821		816	PREDICTED: uncharacterized protein LOC10	0.916	0.784	0.714	0.0
356495744		782	PREDICTED: uncharacterized protein LOC10	0.909	0.812	0.703	0.0
356538795		793	PREDICTED: uncharacterized protein LOC10	0.909	0.800	0.698	0.0
242066290		878	hypothetical protein SORBIDRAFT_04g03090	0.991	0.788	0.647	0.0
413923562		877	hypothetical protein ZEAMMB73_341215 [Ze	0.987	0.785	0.643	0.0

>gi\|297737338\|emb\|CBI26539.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1128 bits (2917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/710 (77%), Positives = 616/710 (86%), Gaps = 12/710 (1%)

Query: 1   MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
           +L+PSSGKRA+DTVVAGILHDVVDD CESL S+EEEFGD+VAKLVAGVSRLSYINQLLRR
Sbjct: 159 VLVPSSGKRAIDTVVAGILHDVVDDTCESLHSVEEEFGDDVAKLVAGVSRLSYINQLLRR 218

Query: 61  HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
           HRRINVNQG LGHEEAN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP  KA+AVAQ
Sbjct: 219 HRRINVNQGILGHEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQ 278

Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
           ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ F +MRADLASMWSP NR G  RR   
Sbjct: 279 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQTFLQMRADLASMWSPSNRSGNPRRTAA 338

Query: 181 IVSSP-PLDER-TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS 238
             SSP PL+E+  A D E     D  V SMKDLLEAV+PFDIL DRRKR  FL++L K S
Sbjct: 339 KDSSPVPLNEKEIAFDYEGSLAVDADVTSMKDLLEAVLPFDILLDRRKRINFLNNLGKCS 398

Query: 239 EAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRR 298
           + QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+PGMEVTLSSRLKSLYSI+SKM+R
Sbjct: 399 KTQKKPQVVRDAGLALASLVLCEEALERELLISTSYVPGMEVTLSSRLKSLYSIYSKMKR 458

Query: 299 KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 358
           KDVGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL I+HRLW PIDGEFDDYIVNPKP
Sbjct: 459 KDVGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLLSIIHRLWTPIDGEFDDYIVNPKP 518

Query: 359 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIE 418
           SGYQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAAHWLYKET NKL S S +D+S+I+
Sbjct: 519 SGYQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETENKLPSTSILDDSEIK 578

Query: 419 ASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVS 478
           ASS  S+D ++ N +  D+FQKY SLK GHPV+RVEGS+LLAAV++RV+K GRELLVAVS
Sbjct: 579 ASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEGSHLLAAVVVRVDKDGRELLVAVS 638

Query: 479 FGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYH 538
           FGL ASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDWCTCLEKYTLCRDGMYH
Sbjct: 639 FGLVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYH 698

Query: 539 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVS--------RRSSDSVA 590
           K+DQF RLLPTFIQ+  LTE+EESEYWAVVSA+FEGK + S+ S        R SS+ ++
Sbjct: 699 KEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGKQIASIESHSNSSFYKRPSSNPIS 758

Query: 591 PTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SKLGGKANGNPDSVVPGEVVIVCWP 648
            TS+EA+INNKV LLRTML+WEEQLRSEA +RQ  +K+G      P SVV GEVVIVCWP
Sbjct: 759 STSLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTKVGADPYSTPKSVVLGEVVIVCWP 818

Query: 649 NGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
           +GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPNT+LKDGD+VEVR+
Sbjct: 819 HGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVEVRM 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357481159\|ref\|XP_003610865.1\| GTP pyrophosphokinase [Medicago truncatula] gi\|355512200\|gb\|AES93823.1\| GTP pyrophosphokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449483240\|ref\|XP_004156531.1\| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449439043\|ref\|XP_004137297.1\| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255557973\|ref\|XP_002520015.1\| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi\|223540779\|gb\|EEF42339.1\| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225454821\|ref\|XP_002274363.1\| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356495744\|ref\|XP_003516733.1\| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]	Back alignment and taxonomy information

>gi\|356538795\|ref\|XP_003537886.1\| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]	Back alignment and taxonomy information

>gi\|242066290\|ref\|XP_002454434.1\| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor] gi\|241934265\|gb\|EES07410.1\| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|413923562\|gb\|AFW63494.1\| hypothetical protein ZEAMMB73_341215 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		698
TIGR_CMR\|DET_0005		728	DET_0005 "GTP pyrophosphokinas	0.171	0.164	0.515	3.7e-58
UNIPROTKB\|Q3A9Z8		716	relA "GTP pyrophosphokinase" [	0.180	0.175	0.471	1.2e-55
TIGR_CMR\|CHY_2223		716	CHY_2223 "GTP pyrophosphokinas	0.180	0.175	0.471	1.2e-55
TIGR_CMR\|GSU_2236		716	GSU_2236 "GTP pyrophosphokinas	0.233	0.227	0.406	3.1e-54
TIGR_CMR\|BA_4637		727	BA_4637 "GTP pyrophosphokinase	0.176	0.169	0.458	4.8e-51
UNIPROTKB\|Q4K899		747	relA "GTP diphosphokinase" [Ps	0.171	0.160	0.527	9.2e-49
TAIR\|locus:2088262		709	RSH2 "RELA/SPOT homolog 2" [Ar	0.214	0.211	0.468	3.2e-48
TAIR\|locus:2014335		715	RSH3 "RELA/SPOT homolog 3" [Ar	0.214	0.209	0.481	1.2e-47
UNIPROTKB\|P66014		738	relA "Bifunctional (p)ppGpp sy	0.189	0.178	0.431	2.1e-46
TIGR_CMR\|CBU_1375		714	CBU_1375 "GTP pyrophosphokinas	0.197	0.193	0.456	3e-46

TIGR_CMR\|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

 Score = 316 (116.3 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
 Identities = 68/132 (51%), Positives = 82/132 (62%)

Query:   277 GMEVTLSSRLKSLYSIFSKMRR-KDVG--IHKVYDARALRVVVGDKNGTLHGPAIQCCYS 333
             G++V LS R K LYSI+ KM +    G     +YD  ALRV+V D         I  CY 
Sbjct:   238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288

Query:   334 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 393
              + IVH LW PI G FDDYI NPKP+GYQSLHTAV     + LEVQ+RT +MH  AE+G+
Sbjct:   289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348

Query:   394 AAHWLYKETGNK 405
             AAHW YK  G +
Sbjct:   349 AAHWRYKTAGKE 360

GO:0008728 "GTP diphosphokinase activity" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

UNIPROTKB\|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4K899 relA "GTP diphosphokinase" [Pseudomonas protegens Pf-5 (taxid:220664)]	Back alignment and assigned GO terms

TAIR\|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1375 CBU_1375 "GTP pyrophosphokinase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.6	LOW CONFIDENCE prediction!
4th Layer	2.7.6.5	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014050001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (864 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		698
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	2e-48
smart00954		111	smart00954, RelA_SpoT, Region found in RelA / SpoT	1e-44
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	2e-43
TIGR00691		683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	2e-41
pfam04607		116	pfam04607, RelA_SpoT, Region found in RelA / SpoT	6e-40
TIGR00691		683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	7e-40
pfam13328		156	pfam13328, HD_4, HD domain	1e-39
PRK10872		743	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos	2e-34
PRK11092		702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	2e-31
PRK11092		702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	5e-31
cd05399		129	cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (	4e-28
PRK10872		743	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos	1e-19
COG2357		231	COG2357, COG2357, PpGpp synthetase catalytic domai	6e-11
cd01668		60	cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S	6e-09
pfam02824		60	pfam02824, TGS, TGS domain	2e-07
cd01616		60	cd01616, TGS, The TGS domain, named after the ThrR	2e-05
COG2104		68	COG2104, ThiS, Sulfur transfer protein involved in	4e-04

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

 Score =  181 bits (461), Expect = 2e-48
 Identities = 69/129 (53%), Positives = 90/129 (69%), Gaps = 9/129 (6%)

Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
           G++  +S R K +YSI+ KM++K +   ++YD RA+R++V           I  CY+ L 
Sbjct: 233 GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALG 283

Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
           IVH LW PI GEFDDYI NPKP+GYQSLHT V GP+G  +EVQIRT++MHE AE G+AAH
Sbjct: 284 IVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAH 343

Query: 397 WLYKETGNK 405
           W YKE G+ 
Sbjct: 344 WRYKEGGSA 352

Length = 701

>gnl\|CDD\|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins	Back alignment and domain information

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>gnl\|CDD\|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins	Back alignment and domain information

>gnl\|CDD\|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>gnl\|CDD\|222047 pfam13328, HD_4, HD domain	Back alignment and domain information

>gnl\|CDD\|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	Back alignment and domain information

>gnl\|CDD\|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>gnl\|CDD\|217243 pfam02824, TGS, TGS domain	Back alignment and domain information

>gnl\|CDD\|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>gnl\|CDD\|225015 COG2104, ThiS, Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		698
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	100.0
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	100.0
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	100.0
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	100.0
KOG1157		543	consensus Predicted guanosine polyphosphate pyroph	100.0
PF13328		153	HD_4: HD domain; PDB: 3NR1_B.	99.95
PF04607		115	RelA_SpoT: Region found in RelA / SpoT proteins; I	99.95
cd05399		129	NT_Rel-Spo_like Nucleotidyltransferase (NT) domain	99.94
COG2357		231	PpGpp synthetase catalytic domain [General functio	99.94
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	99.87
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	99.86
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	99.8
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	99.77
PF02824		60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	99.43
cd01668		60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	98.78
cd01666		75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	98.76
cd01669		76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	98.76
PRK01777		95	hypothetical protein; Validated	98.34
PF02824		60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	98.2
cd01616		60	TGS The TGS domain, named after the ThrRS, GTPase,	98.19
PRK05659		66	sulfur carrier protein ThiS; Validated	98.04
PRK06944		65	sulfur carrier protein ThiS; Provisional	97.95
PRK06437		67	hypothetical protein; Provisional	97.91
cd00565		65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	97.88
PF14451		81	Ub-Mut7C: Mut7-C ubiquitin	97.8
PRK07440		70	hypothetical protein; Provisional	97.74
PRK09602		396	translation-associated GTPase; Reviewed	97.74
PRK08364		70	sulfur carrier protein ThiS; Provisional	97.72
COG2104		68	ThiS Sulfur transfer protein involved in thiamine	97.66
TIGR01683		64	thiS thiamine biosynthesis protein ThiS. This mode	97.66
PRK07696		67	sulfur carrier protein ThiS; Provisional	97.61
cd01667		61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	97.56
cd04938		76	TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma	97.55
PRK08053		66	sulfur carrier protein ThiS; Provisional	97.46
PRK06488		65	sulfur carrier protein ThiS; Validated	97.32
PF03658		84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	97.29
cd01669		76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	97.16
PRK05863		65	sulfur carrier protein ThiS; Provisional	97.04
cd01666		75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	96.89
PRK06083		84	sulfur carrier protein ThiS; Provisional	96.86
cd00754		80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	96.78
PLN02799		82	Molybdopterin synthase sulfur carrier subunit	96.57
TIGR03276		179	Phn-HD phosphonate degradation operons associated	96.15
PF02597		77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	96.1
TIGR01682		80	moaD molybdopterin converting factor, subunit 1, n	95.72
COG2914		99	Uncharacterized protein conserved in bacteria [Fun	95.71
cd01668		60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	94.78
PTZ00258		390	GTP-binding protein; Provisional	94.42
PRK14707		2710	hypothetical protein; Provisional	94.18
COG1163		365	DRG Predicted GTPase [General function prediction	93.97
TIGR01687		88	moaD_arch MoaD family protein, archaeal. Members o	93.49
PRK11130		81	moaD molybdopterin synthase small subunit; Provisi	93.15
PRK12444		639	threonyl-tRNA synthetase; Reviewed	92.96
cd01764		94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	91.74
PLN02908		686	threonyl-tRNA synthetase	91.35
PRK09602		396	translation-associated GTPase; Reviewed	91.04
PF14453		57	ThiS-like: ThiS-like ubiquitin	91.02
cd01616		60	TGS The TGS domain, named after the ThrRS, GTPase,	90.6
PRK05659		66	sulfur carrier protein ThiS; Validated	85.17
PRK14707		2710	hypothetical protein; Provisional	85.16
PRK09169		2316	hypothetical protein; Validated	84.55
PF03658		84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	84.13
PRK01777		95	hypothetical protein; Validated	84.1
TIGR02988		59	YaaA_near_RecF S4 domain protein YaaA. This small	83.86
PF01479		48	S4: S4 domain; InterPro: IPR002942 Ribosomes are t	82.49
cd04938		76	TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma	81.37
COG2104		68	ThiS Sulfur transfer protein involved in thiamine	80.98
cd01667		61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	80.36
PRK09601		364	GTP-binding protein YchF; Reviewed	80.11

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

Probab=100.00  E-value=6e-117  Score=1003.23  Aligned_cols=407  Identities=40%  Similarity=0.646  Sum_probs=369.6

Q ss_pred             CChHHHHHHhhcccccccCCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHHHHhhhccCCCcchhhHHHHHHHHhhccC
Q 005392            9 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD   88 (698)
Q Consensus         9 ~d~~tIiAALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gvTKl~~i~~~~r~~~rk~~~~~~~~~~qae~lRkmlLam~~   88 (698)
                      .|.++++||||||++|||++|.++|++.||++||+||+||||++.+....           .....|+||+|||+|||++
T Consensus        65 ~d~~tl~AaLLHD~vEDt~~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----------~~~~~qaen~rkmllAm~~  133 (701)
T COG0317          65 MDMETLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----------SEEELQAENLRKMLLAMVK  133 (701)
T ss_pred             CCHHHHHHHHccchHhcCCCCHHHHHHHHCHHHHHHHhhHHHhhhhhccC-----------ccchhHHHHHHHHHHHhcc
Confidence            68899999999999999999999999999999999999999998874211           1123489999999999999


Q ss_pred             CccEEeehhhhHHhhhhccccCChHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhCHHHHHHHHHHHhhccCC
Q 005392           89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP  168 (698)
Q Consensus        89 D~RVvlIKLADRLhNmRtl~~~~~ek~~~iA~ETl~IyaPLA~RLGi~~ik~ELEDL~F~~L~P~~y~~i~~~l~~~~~~  168 (698)
                      |+||++||||||||||||+.+++++||+++|+||++||||||||||||++|||||||||+||+|++|+.|.+.|.+    
T Consensus       134 DiRvilIKLADRLhNmrtl~~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e----  209 (701)
T COG0317         134 DIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE----  209 (701)
T ss_pred             CccEEEeehhhhhhhcccCccCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH----
Confidence            9999999999999999999998899999999999999999999999999999999999999999999999999976    


Q ss_pred             CcccccccccccccCCCCCccCccCCCCcccchhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 005392          169 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ  248 (698)
Q Consensus       169 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~  248 (698)
                                                                            .|.+|+.+++++.             
T Consensus       210 ------------------------------------------------------~r~~re~~i~~~~-------------  222 (701)
T COG0317         210 ------------------------------------------------------KRLEREQYIENVV-------------  222 (701)
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHH-------------
Confidence                                                                  4888999998876             


Q ss_pred             hhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCCcH
Q 005392          249 DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI  328 (698)
Q Consensus       249 ~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~V~~R~K~~ySI~~Km~rk~~~~~~I~Di~giRVIv~~~~~~~~~~~~  328 (698)
                               ..+++.|.+         .|+.++|+||+||+||||+||++|+..|++|+|++||||||++         +
T Consensus       223 ---------~~l~~~L~~---------~gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~  275 (701)
T COG0317         223 ---------SELREELKA---------AGIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------I  275 (701)
T ss_pred             ---------HHHHHHHHH---------cCCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------h
Confidence                     235566666         3889999999999999999999999999999999999999996         8


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCCCCCCceeEEEEEcCCCceEEEEEEecchhhHHHhhhhhhhhccccCCCccc
Q 005392          329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS  408 (698)
Q Consensus       329 ~dCy~vlgiIh~~~~pi~~~~kDYIa~PK~nGYqSLHt~V~~~~g~~vEIQIRT~~Mh~~AE~G~aAhw~YK~~~~~~~~  408 (698)
                      .|||++||+||.+|+|+|+|||||||+||+||||||||||.||.|.++||||||..||..||+|+||||.||+++.....
T Consensus       276 ~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~  355 (701)
T COG0317         276 PDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEE  355 (701)
T ss_pred             HHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998732211


Q ss_pred             ccccccchHHHhccCCCCCCCCCcccccc-------cccccc---CCCCCc-------eeeecCCceeeeEEEEEccCCe
Q 005392          409 ISSMDESDIEASSSLSKDTDDHNPLDTDL-------FQKYSS---LKMGHP-------VIRVEGSNLLAAVIIRVEKGGR  471 (698)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~e~~~~~~~~~-------ftp~g~---lp~g~~-------v~t~iG~~c~gAkV~~v~~ngr  471 (698)
                      .-.+-++|.+|++...++.||++++|.|+       |||||+   ||.|+|       |||.|||+|+||||     ||+
T Consensus       356 ~~~Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~  430 (701)
T COG0317         356 KIAWLRQLLEWQEESADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR  430 (701)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE
Confidence            11233567888888888899999999874       799994   799977       56669999999999     999


Q ss_pred             eEEEecccccCCCCeEEEcCCCC--cchhHHHHhHhhccccc--ccc--------ccCCCCchhhhccccce
Q 005392          472 ELLVAVSFGLAASEVVADRRPSF--QIKCWEAYARLYKKASD--EWW--------CQPGHGDWCTCLEKYTL  531 (698)
Q Consensus       472 ~l~v~l~~~L~~gD~Vei~T~~~--p~~dWL~fv~t~k~~~~--~~~--------~~~g~g~~~~~l~k~~~  531 (698)
                        +|||+++|+|||+|||+|+++  |+++||+||+|++++++  +|+        .+.|.-.++..|++-+.
T Consensus       431 --ivpl~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~  500 (701)
T COG0317         431 --IVPLTTKLQTGDQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL  500 (701)
T ss_pred             --EeccceecCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence              999999999999999999994  89999999999999988  888        77899899999988776

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]	Back alignment and domain information

>PF13328 HD_4: HD domain; PDB: 3NR1_B	Back alignment and domain information

>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat	Back alignment and domain information

>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	Back alignment and domain information

>COG2357 PpGpp synthetase catalytic domain [General function prediction only]	Back alignment and domain information

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []	Back alignment and domain information

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2	Back alignment and domain information

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea	Back alignment and domain information

>PRK01777 hypothetical protein; Validated	Back alignment and domain information

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []	Back alignment and domain information

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PRK06944 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK06437 hypothetical protein; Provisional	Back alignment and domain information

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein	Back alignment and domain information

>PF14451 Ub-Mut7C: Mut7-C ubiquitin	Back alignment and domain information

>PRK07440 hypothetical protein; Provisional	Back alignment and domain information

>PRK09602 translation-associated GTPase; Reviewed	Back alignment and domain information

>PRK08364 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>TIGR01683 thiS thiamine biosynthesis protein ThiS	Back alignment and domain information

>PRK07696 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA	Back alignment and domain information

>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF	Back alignment and domain information

>PRK08053 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK06488 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function	Back alignment and domain information

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea	Back alignment and domain information

>PRK05863 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2	Back alignment and domain information

>PRK06083 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins	Back alignment and domain information

>PLN02799 Molybdopterin synthase sulfur carrier subunit	Back alignment and domain information

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein	Back alignment and domain information

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer	Back alignment and domain information

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal	Back alignment and domain information

>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>PTZ00258 GTP-binding protein; Provisional	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>COG1163 DRG Predicted GTPase [General function prediction only]	Back alignment and domain information

>TIGR01687 moaD_arch MoaD family protein, archaeal	Back alignment and domain information

>PRK11130 moaD molybdopterin synthase small subunit; Provisional	Back alignment and domain information

>PRK12444 threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd01764 Urm1 Urm1-like ubuitin domain	Back alignment and domain information

>PLN02908 threonyl-tRNA synthetase	Back alignment and domain information

>PRK09602 translation-associated GTPase; Reviewed	Back alignment and domain information

>PF14453 ThiS-like: ThiS-like ubiquitin	Back alignment and domain information

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function	Back alignment and domain information

>PRK01777 hypothetical protein; Validated	Back alignment and domain information

>TIGR02988 YaaA_near_RecF S4 domain protein YaaA	Back alignment and domain information

>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF	Back alignment and domain information

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA	Back alignment and domain information

>PRK09601 GTP-binding protein YchF; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		698
1vj7_A		393	Crystal Structure Of The Bifunctional Catalytic Fra		2e-23

>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393

Back alignment and structure

Iteration: 1

Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 10/125 (8%) Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336 G+ + R K +YSI+ KMR K +++D A+R V+ ++ Y+++ Sbjct: 233 GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSD---------VYAMVG 283 Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396 +H LW P+ G F DYI PK +GYQS+HT V GP G +E+QIRT++MH+ AE+G+AAH Sbjct: 284 YIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGP-IEIQIRTKEMHQVAEYGVAAH 342 Query: 397 WLYKE 401 W YK+ Sbjct: 343 WAYKK 347

PyMOL of 1vj7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		698
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	8e-50
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	8e-48
2be3_A		226	GTP pyrophosphokinase; structural genomics, PSI, p	3e-40
3nqw_A		179	CG11900; stringent response, pyrophosphohydrolase,	2e-36
3nr1_A		178	HD domain-containing protein 3; stringent response	3e-36
3l9d_A		255	SMU.1046C, putative GTP pyrophosphokinase; transfe	5e-34
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	5e-06
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	1e-05
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	4e-04
1f0z_A		66	THis protein; ubiquitin fold, transport protein; N	5e-04

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393	Back alignment and structure

 Score =  178 bits (453), Expect = 8e-50
 Identities = 65/174 (37%), Positives = 90/174 (51%), Gaps = 14/174 (8%)

Query: 11  VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
             TV  G LHDVV+D   +L +IE +FG +V  +V GV++L              V   +
Sbjct: 68  AVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLG------------KVEYKS 115

Query: 71  LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
              + A + R ML+ M  D RV+L+KLADRLHNMRT+  L   K   +++ET+ I+  LA
Sbjct: 116 HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLA 175

Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
            RLG+  +K ELEDL F  L    F K+   +      R R      I T + S
Sbjct: 176 HRLGISRIKWELEDLAFRYLNETEFYKISHMMNE--KRREREALVDDIVTKIKS 227

PyMOL of 1vj7

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393	Back alignment and structure

>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226	Back alignment and structure

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179	Back alignment and structure

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178	Back alignment and structure

>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Length = 77	Back alignment and structure

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Length = 66	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		698
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	100.0
3l9d_A		255	SMU.1046C, putative GTP pyrophosphokinase; transfe	100.0
2be3_A		226	GTP pyrophosphokinase; structural genomics, PSI, p	100.0
3nqw_A		179	CG11900; stringent response, pyrophosphohydrolase,	99.86
3nr1_A		178	HD domain-containing protein 3; stringent response	99.83
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	99.73
2eki_A		93	DRG 1, developmentally-regulated GTP-binding prote	99.12
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	98.99
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	98.9
1wwt_A		88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	98.67
1wxq_A		397	GTP-binding protein; structural genomics, riken st	98.43
2l32_A		74	Small archaeal modifier protein 2; protein BIN; NM	97.99
2hj1_A		97	Hypothetical protein; structural genomics, PSI, pr	97.93
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	97.89
1f0z_A		66	THis protein; ubiquitin fold, transport protein; N	97.79
2k5p_A		78	THis protein, thiamine-biosynthesis protein; NESG,	97.79
2kl0_A		73	Putative thiamin biosynthesis THis; structural gen	97.72
1tyg_B		87	YJBS; alpha beta barrel, protein-protein complex,	97.72
1ryj_A		70	Unknown; beta/alpha protein, structural genomics,	97.6
2cu3_A		64	Unknown function protein; thermus thermophilus HB8	97.59
2eki_A		93	DRG 1, developmentally-regulated GTP-binding prote	97.56
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	97.19
2q5w_D		77	Molybdopterin converting factor, subunit 1; MOCO,	97.08
1vjk_A		98	Molybdopterin converting factor, subunit 1; struct	96.93
3po0_A		89	Small archaeal modifier protein 1; ubiquitin-like	96.87
1wwt_A		88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	96.77
1fm0_D		81	Molybdopterin convertin factor, subunit 1; molybde	96.53
1wxq_A		397	GTP-binding protein; structural genomics, riken st	96.11
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	96.03
2g1e_A		90	Hypothetical protein TA0895; MOAD, molybdopterin,	95.94
3rpf_C		74	Molybdopterin converting factor, subunit 1 (MOAD);	95.76
3dwg_C		93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	94.72
2l52_A		99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	93.64
1v8c_A		168	MOAD related protein; riken structural genomics/pr	92.84
4a9a_A		376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	92.76
2qjl_A		99	URM1, ubiquitin-related modifier 1; ubiquitin-like	92.34
2dby_A		368	GTP-binding protein; GDP, structural genomics, NPP	88.58
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	87.95
1jal_A		363	YCHF protein; nucleotide-binding fold, structural	84.85
1wgk_A		114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	83.77
2ohf_A		396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	82.09
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	80.8

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8	Back alignment and structure

Probab=100.00  E-value=2.4e-88  Score=736.05  Aligned_cols=311  Identities=38%  Similarity=0.610  Sum_probs=246.1

Q ss_pred             CChHHHHHHhhcccccccCCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHHHHhhhccCCCcchhhHHHHHHHHhhccC
Q 005392            9 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD   88 (698)
Q Consensus         9 ~d~~tIiAALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gvTKl~~i~~~~r~~~rk~~~~~~~~~~qae~lRkmlLam~~   88 (698)
                      .|.++++||||||+||||++|.++|++.||++||.||+||||++.+++..            ....|+|++|||||||++
T Consensus        66 ~D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~Va~lV~gvTk~~~~~~~~------------~~~~qae~~Rkmllam~~  133 (393)
T 1vj7_A           66 LDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKS------------HEEQLAENHRKMLMAMSK  133 (393)
T ss_dssp             CCHHHHHHHHHTTHHHHSSCCHHHHHHHHCHHHHHHHHHHHHHC--------------------------CCSCTTTSCC
T ss_pred             CCHHHHHHHHhhhHHhcCCCCHHHHHHHhCHHHHHHHHHHHhcccCCccc------------HHHHHHHHHHHHHHhhcC
Confidence            48899999999999999999999999999999999999999998875421            123589999999999999


Q ss_pred             CccEEeehhhhHHhhhhccccCChHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhCHHHHHHHHHHHhhccCC
Q 005392           89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP  168 (698)
Q Consensus        89 D~RVvlIKLADRLhNmRtl~~~~~ek~~~iA~ETl~IyaPLA~RLGi~~ik~ELEDL~F~~L~P~~y~~i~~~l~~~~~~  168 (698)
                      |+||++||||||||||||+..+|+++|+++|+||++|||||||||||++||||||||||+||+|+.|+.|.+.|.+    
T Consensus       134 D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~----  209 (393)
T 1vj7_A          134 DIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE----  209 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHTCC------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----
T ss_pred             CcceeeeeHHHHHHccCchhhCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975    


Q ss_pred             CcccccccccccccCCCCCccCccCCCCcccchhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 005392          169 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ  248 (698)
Q Consensus       169 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~  248 (698)
                                                                            .|.+|+.+++++.             
T Consensus       210 ------------------------------------------------------~r~~r~~~i~~i~-------------  222 (393)
T 1vj7_A          210 ------------------------------------------------------KRREREALVDDIV-------------  222 (393)
T ss_dssp             ------------------------------------------------------THHHHHHHHHHHH-------------
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHH-------------
Confidence                                                                  3677888888775             


Q ss_pred             hhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCCcH
Q 005392          249 DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI  328 (698)
Q Consensus       249 ~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~V~~R~K~~ySI~~Km~rk~~~~~~I~Di~giRVIv~~~~~~~~~~~~  328 (698)
                               ..+++.|.+         .|+.+.|+||+|++||||+||+||+.+|++|+|++||||||++         +
T Consensus       223 ---------~~l~~~L~~---------~gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~  275 (393)
T 1vj7_A          223 ---------TKIKSYTTE---------QGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------Q  275 (393)
T ss_dssp             ---------HHHHHHHHT---------TTCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------H
T ss_pred             ---------HHHHHHHHh---------cCCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------H
Confidence                     124455554         3778899999999999999999999999999999999999985         8


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCCCCCCceeEEEEEcCCCceEEEEEEecchhhHHHhhhhhhhhccccCCCccc
Q 005392          329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS  408 (698)
Q Consensus       329 ~dCy~vlgiIh~~~~pi~~~~kDYIa~PK~nGYqSLHt~V~~~~g~~vEIQIRT~~Mh~~AE~G~aAhw~YK~~~~~~~~  408 (698)
                      .|||+++|+||+.|+|+|++|||||++||+||||||||+|.+|.| ++||||||..||.|||+||||||+||++......
T Consensus       276 ~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~  354 (393)
T 1vj7_A          276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVN  354 (393)
T ss_dssp             HHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC-------------
T ss_pred             HHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccc
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999986432101


Q ss_pred             cccc------ccchHHHhccCCCCCCCC
Q 005392          409 ISSM------DESDIEASSSLSKDTDDH  430 (698)
Q Consensus       409 ~~~~------~~~l~~~~~~~~~~~e~~  430 (698)
                      ...+      -++|.+|++...++.||+
T Consensus       355 ~~~~~~~~~wl~~ll~~~~~~~~~~ef~  382 (393)
T 1vj7_A          355 QAEQKVGMNWIKELVELQDASNGDAVDF  382 (393)
T ss_dssp             --------CHHHHHHHC-----------
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            1122      234456666666667775

PyMOL of 1vj7

>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}	Back alignment and structure

>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8	Back alignment and structure

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}	Back alignment and structure

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}	Back alignment and structure

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}	Back alignment and structure

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}	Back alignment and structure

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}	Back alignment and structure

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A	Back alignment and structure

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2	Back alignment and structure

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A	Back alignment and structure

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2	Back alignment and structure

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2	Back alignment and structure

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E	Back alignment and structure

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}	Back alignment and structure

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*	Back alignment and structure

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1	Back alignment and structure

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A	Back alignment and structure

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}	Back alignment and structure

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D	Back alignment and structure

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A	Back alignment and structure

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}	Back alignment and structure

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A	Back alignment and structure

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}	Back alignment and structure

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1	Back alignment and structure

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}	Back alignment and structure

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A	Back alignment and structure

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A	Back alignment and structure

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		698
d1vj7a1		192	a.211.1.1 (A:5-196) Stringent response-like protei	1e-30
d2be3a1		203	d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase	1e-25
d1vj7a2		175	d.218.1.8 (A:197-371) Stringent response-like prot	6e-23
d1wxqa2		76	d.15.10.2 (A:320-395) GTP-binding protein PH0525 {	4e-07
d1rwsa_		68	d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeo	4e-05
d1zud21		65	d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carr	3e-04
d1nyra2		59	d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS	5e-04
d1tkea1		62	d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS	7e-04

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192	Back information, alignment and structure


class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  116 bits (292), Expect = 1e-30
 Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 12/139 (8%)

Query: 12  DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
            TV  G LHDVV+D   +L +IE +FG +V  +V GV++L              V   + 
Sbjct: 65  VTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLG------------KVEYKSH 112

Query: 72  GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
             + A + R ML+ M  D RV+L+KLADRLHNMRT+  L   K   +++ET+ I+  LA 
Sbjct: 113 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 172

Query: 132 RLGLWALKAELEDLCFAVL 150
           RLG+  +K ELEDL F  L
Sbjct: 173 RLGISRIKWELEDLAFRYL 191

PyMOL of d1vj7a1

>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203	Back information, alignment and structure

>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76	Back information, alignment and structure

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 68	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Length = 65	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		698
d1vj7a2		175	Stringent response-like protein RelA domain 2 {Str	100.0
d1vj7a1		192	Stringent response-like protein RelA N-terminal do	100.0
d2be3a1		203	Putative GTP pyrophosphokinase SP1097 {Streptococc	99.96
d1wxqa2		76	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.34
d1tkea1		62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	99.11
d1nyra2		59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	98.94
d1wxqa2		76	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.06
d1tkea1		62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	97.91
d1zud21		65	Thiamin biosynthesis sulfur carrier protein ThiS {	97.75
d2hj1a1		77	Hypothetical protein HI0395 {Haemophilus influenza	97.35
d1nyra2		59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	97.31
d1rwsa_		68	Hypothetical protein PF1061 {Archaeon Pyrococcus f	97.3
d1tygb_		65	Thiamin biosynthesis sulfur carrier protein ThiS {	96.94
d2cu3a1		63	Uncharacterised protein TTHA0675 {Thermus thermoph	96.78
d1vjka_		88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	96.42
d1xo3a_		101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	87.09
d1fm0d_		81	Molybdopterin synthase subunit MoaD {Escherichia c	86.58
d1v8ca1		87	MoaD-related protein, N-terminal domain {Thermus t	80.37

>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: RelA/SpoT domain
domain: Stringent response-like protein RelA domain 2
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=1.3e-48  Score=380.30  Aligned_cols=141  Identities=40%  Similarity=0.748  Sum_probs=121.6

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCC
Q 005392          223 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG  302 (698)
Q Consensus       223 ~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~V~~R~K~~ySI~~Km~rk~~~  302 (698)
                      .+.+|+.+++++.                      ..+++.|.+.         |+.++|.||+|++||||+||++++.+
T Consensus        14 ~r~~re~~i~~i~----------------------~~L~~~L~~~---------~i~~~I~gR~K~~ySI~~Km~~k~~~   62 (175)
T d1vj7a2          14 KRREREALVDDIV----------------------TKIKSYTTEQ---------GLFGDVYGRPKHIYSIYRKMRDKKKR   62 (175)
T ss_dssp             THHHHHHHHHHHH----------------------HHHHHHHHTT---------TCCCEEEECCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHH----------------------HHHHHHHHhc---------CCccEEEEEEccHHHHHHHHHhcCCC
Confidence            4778888888776                      1355566653         67899999999999999999999999


Q ss_pred             CCcccceeeEEEEEcCCCCCCCCCcHHHHHHHHHHHHhcCccccccccccccCCCCCCCceeEEEEEcCCCceEEEEEEe
Q 005392          303 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT  382 (698)
Q Consensus       303 ~~~I~Di~giRVIv~~~~~~~~~~~~~dCy~vlgiIh~~~~pi~~~~kDYIa~PK~nGYqSLHt~V~~~~g~~vEIQIRT  382 (698)
                      |++|+|++||||||++         ..|||++||+||++|+|+|++|||||++||+||||||||+|.+|+| ++||||||
T Consensus        63 ~~~i~Di~aiRIIv~~---------~~dcy~~lg~ih~~~~p~~~r~kDyI~~PK~nGYqSLHt~v~~~~~-~~evqIRT  132 (175)
T d1vj7a2          63 FDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRT  132 (175)
T ss_dssp             CCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEE
T ss_pred             hhhccccceEEEEEee---------cccHHHHHHHHHhcCCceeeccccccccCCCCCcceEEEEEEcCCc-cEEEEEEe
Confidence            9999999999999985         8999999999999999999999999999999999999999999987 89999999


Q ss_pred             cchhhHHHhhhhhhhhccccCC
Q 005392          383 QKMHEYAEHGLAAHWLYKETGN  404 (698)
Q Consensus       383 ~~Mh~~AE~G~aAhw~YK~~~~  404 (698)
                      ..||.|||+|+||||.||++..
T Consensus       133 ~~M~~~Ae~G~aahw~Yk~~~~  154 (175)
T d1vj7a2         133 KEMHQVAEYGVAAHWAYKKGVR  154 (175)
T ss_dssp             HHHHHHHHHTTCC---------
T ss_pred             hHHHHHHhhhHHHHHhhccCCC
Confidence            9999999999999999997643

PyMOL of d1vj7a2

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]}	Back information, alignment and structure

>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure