Citrus Sinensis ID: 005421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
Protein Sequence
MGDLPSQNNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEccccccHHHHHHHHHcccEEEEEEEEEcHHHHHHHHHHHccccccccEEEEccHHcccHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEEcEEEcccccHHHHHHHHHcccccEEcHHHHHHHHHHcccEccccccccccccccccccHHHHcccccccccccccHHHccEEEccHHHHHHHHHHHHHHHHcccccccccccccEHHHcccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgdlpsqnngengdkakaivpkpeildfelpadracassmhvgeniasssgsnlrssfigmgfspsLVDKVIEEKGQDNVDLLLETLIEYNAlqesnsqssdsldtlfgdkdansppeistmvqpkeepnvmdeglHIEKRASLLMMNFSVNEVDFALdklgkdapvyELVDFITAAQISenfeketddaphdndgtnedksdetlYGTMEITLQLLEMGFSENQVSLAIEKfgsktpiseLADKIFsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssweekvkpnssrygmqqafnsnpcrsinkvvaqppyffygNVVDVSIDCWVKMSHFLyslepefvnsQYFSALSrregylhnlpttnrfhippeppmtiqdaiphtkkwwpswdtrkhlscinsgtsGISQLCERFEKLLRDsrgvlssqqQRDILHRSEKLNLVWvgayklgpvdpeHIELIlgypsnhtqaAGNSLTARLESLRHCFQTDTLGYHLSVLksmfpggltMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWessgqtgelvqIEDIQALTTKKFESLIHKLgsidfvicqnsvpqipnskqisnskdpkmaaesdnlpdfdfsLYYEFVRVVQRVRSMKR
Flexible Loop (DISEMBL)
mgdlpsqnngengdkakaivpKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALqesnsqssdSLDTLFGDKdansppeistmvqpkeepnVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENfeketddaphdndgtnedksdetLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIfsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSrgvlssqqqrdilhrseklnlVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKgvisietsetnrRILKRwwessgqtgelvqIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Low Complexity Region (SEG)
MGDLPSQNNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered region (IsUnstruct)
*********************************************************FIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA********************************************HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI**************************LYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC****************************************************************************************CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS**V*******DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS**************************DFDFSLYYEFVRVVQR******
Disordered Region (DISOPRED)
*********************************************************FIGMGFSPSLVDKVIEEKGQDNVDLLLETL***********************K****************************KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETD***********************ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRS*****************************************************************************************G*****************AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERF*K************QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI**************LPDFDFSLYYEFVRVVQRVRSM**
Disordered Region (DISEMBL)
************GDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQE********LDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPD*******************KEEYFDDFSNSTSQFQHVDF**********************************RYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR********RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNS************AESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered Region (DISPRO)
*************************LDFELPADRACA**************SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQ******************************************HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFE***************DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTE***********************PKEEYFDDFSNSTSQFQHVDF***********************SW*EKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDLPSQNNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	697	2.2.26 [Sep-21-2011]
Q9M548	626	DNA (cytosine-5)-methyltr	no	no	0.467	0.520	0.430	2e-79
Q9LXE5	624	DNA (cytosine-5)-methyltr	no	no	0.794	0.887	0.311	9e-78

>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1

 Score =  297 bits (760), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)

Query: 361 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 420
           RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query: 421 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 480
             NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L    
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query: 481 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 538
                 +  QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query: 539 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 598
           +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query: 599 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 658
            NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query: 659 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 697
           +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2

 Score =  291 bits (746), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 201/645 (31%), Positives = 320/645 (49%), Gaps = 91/645 (14%)

Query: 56  SSFIGMGFSPSLVDKVIEEKGQDNVD--LLLETLIEYNALQESNSQSSDSLDTLFGDKDA 113
           +SF+ MGFS  ++ + IEE    N++  ++LETL  Y+A  E++S  S  ++       A
Sbjct: 64  ASFVEMGFSTQMIARAIEETAGANMEPMMILETLFNYSASTEASSSKSKVINHFI----A 119

Query: 114 NSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDF 173
              PE   +++  +E    D G   E   +LL    +  EVD    KL +   +   ++ 
Sbjct: 120 MGFPE-EHVIKAMQEHGDEDVG---EITNALL----TYAEVD----KLRESEDMNININD 167

Query: 174 ITAAQISENFEKETDDAPHD-NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEK 232
                +   +   +DD   + N+ +NED+          I   L++MG+     ++AIE+
Sbjct: 168 DDDDNL---YSLSSDDEEDELNNSSNEDR----------ILQALIKMGYLREDAAIAIER 214

Query: 233 FGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKR 292
            G    + E+ D I + Q+      +R +D +     Y  PD   +   MN ++  R   
Sbjct: 215 CGEDASMEEVVDFICAAQM------ARQFDEI-----YAEPD---KKELMNNNKKRR--- 257

Query: 293 PKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQ 352
                               + E      P++ + D   S         V PN     M 
Sbjct: 258 -------------------TYTET-----PRKPNTDQLISLPKEMIGFGV-PNHPGLMMH 292

Query: 353 QAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRR 412
           +         I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+
Sbjct: 293 RPV------PIPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARK 346

Query: 413 EGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERF 472
            GY+HNLP  NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+ 
Sbjct: 347 RGYIHNLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKI 405

Query: 473 EKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGN 532
            + L    G      Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G 
Sbjct: 406 REALERYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGI 465

Query: 533 SLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVI 592
           S T R +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+
Sbjct: 466 STTDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVV 525

Query: 593 SIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 652
           S+E S+ NR IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +    
Sbjct: 526 SVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS---- 581

Query: 653 IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 697
            P +     ++  ++    ++      SL++++ R+++ VR   R
Sbjct: 582 -PCNNLAGGNRHHRVGLGGEH-----SSLFFDYCRILEAVRRKAR 620

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	697
225432124	712	PREDICTED: DNA (cytosine-5)-methyltransf	0.967	0.946	0.566	0.0
341868935	710	domain rearranged methyltransferase [Vit	0.964	0.946	0.565	0.0
255556520	678	conserved hypothetical protein [Ricinus	0.921	0.946	0.547	0.0
224112050	609	DNA methyltransferase [Populus trichocar	0.869	0.995	0.547	0.0
356519874	702	PREDICTED: DNA (cytosine-5)-methyltransf	0.941	0.934	0.533	0.0
449441506	724	PREDICTED: uncharacterized protein LOC10	0.925	0.890	0.511	0.0
356564666	729	PREDICTED: DNA (cytosine-5)-methyltransf	0.942	0.901	0.497	0.0
449528407	644	PREDICTED: DNA (cytosine-5)-methyltransf	0.816	0.883	0.547	1e-177
357479111	1032	DNA (cytosine-5)-methyltransferase DRM2	0.949	0.641	0.482	1e-176
147779004	1960	hypothetical protein VITISV_038412 [Viti	0.700	0.248	0.568	1e-166

>gi|225432124|ref|XP_002264226.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/715 (56%), Positives = 509/715 (71%), Gaps = 41/715 (5%)

Query: 6   SQNNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSP 65
           S+  GE G   K      E L+  LP +  CA   H+G N ASSSGS LRSSFIGMGF P
Sbjct: 14  SETVGERGTMIKV-----EPLELNLPTENMCAR--HIGHNGASSSGSKLRSSFIGMGFLP 66

Query: 66  SLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQP 125
           SLVDKVIEEKG+D+VDLLLETL    ALQ+S S+SSDSLD+   D+D N+PP+ S    P
Sbjct: 67  SLVDKVIEEKGEDDVDLLLETLCANAALQKSISESSDSLDSFLNDEDTNNPPKFSAGFHP 126

Query: 126 KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEK 185
           KEEP+V   G++ +KRA+L+MM FSV+EV+FA+DKLG+ APV ELVDFI AAQI+ + + 
Sbjct: 127 KEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIAGSSKM 185

Query: 186 ETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 245
           + DD  + N+   ED ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD 
Sbjct: 186 DADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADS 245

Query: 246 IFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NS 304
           IF+GQI      S +  T ++   +   D  S  + M      R         +++S  +
Sbjct: 246 IFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEA 303

Query: 305 TSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEE---------------------KVK 343
            SQ + VD  ++ KGKRPKQESLDDSS+++  +W E                     +V 
Sbjct: 304 VSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQVA 363

Query: 344 PNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNS 403
              +++GM       PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+
Sbjct: 364 GQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVTNVSHDSWNKISQFLYALEPEFVNT 423

Query: 404 QYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTS 463
           Q+FSAL+R+EGY+HNLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TS
Sbjct: 424 QFFSALNRKEGYIHNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETS 483

Query: 464 GISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYP 523
           GISQLC+R  K+L DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILGYP
Sbjct: 484 GISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYP 543

Query: 524 SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR 583
            NHT+    SL  RL+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+
Sbjct: 544 LNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQ 603

Query: 584 LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643
           LGI LKGV+S+E SET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  DF
Sbjct: 604 LGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDF 663

Query: 644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 697
           VICQN            +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 664 VICQNPC--------TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341868935|gb|AEK98591.1| domain rearranged methyltransferase [Vitis amurensis]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/715 (56%), Positives = 506/715 (70%), Gaps = 43/715 (6%)

Query: 6   SQNNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSP 65
           S+  GE G   K      E L+  LP +  CA   H+G N ASSSGS LRSSFIGMGF P
Sbjct: 14  SETVGERGTMIKV-----EPLELNLPTENMCAR--HIGHNGASSSGSKLRSSFIGMGFLP 66

Query: 66  SLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQP 125
           SLVDKVIEEKG+DNVDLLLETL    ALQ+S S+SSDSLD+   D+D N+PP+ S    P
Sbjct: 67  SLVDKVIEEKGEDNVDLLLETLCANAALQKSISESSDSLDSFLNDEDTNNPPKFSAGFHP 126

Query: 126 KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEK 185
           KEEP+V   G++ +KRA+L+MM FSV+EV+FA+DKLG+ APV ELVDFI AAQI+ + + 
Sbjct: 127 KEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIAGSSKM 185

Query: 186 ETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 245
           + DD  + N+   ED ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD 
Sbjct: 186 DADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADS 245

Query: 246 IFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NS 304
           IF+GQI      S +  T ++   +   D  S  + M      R         +++S  +
Sbjct: 246 IFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEA 303

Query: 305 TSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEE---------------------KVK 343
            SQ + VD  ++ KGKRPKQESLDDSS+++  +W E                     +V 
Sbjct: 304 VSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQVA 363

Query: 344 PNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNS 403
              +++GM       PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+
Sbjct: 364 GQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVSNVSHDSWNKISQFLYALEPEFVNT 423

Query: 404 QYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTS 463
           Q+FSAL+R+EG  HNLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDT K LSCI+S TS
Sbjct: 424 QFFSALNRKEG--HNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTIKQLSCISSETS 481

Query: 464 GISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYP 523
           GISQLC+R  K+L DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILGYP
Sbjct: 482 GISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYP 541

Query: 524 SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR 583
            NHT+    SL  RL+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+
Sbjct: 542 LNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQ 601

Query: 584 LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643
           LGI LKGV+S+E SET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  DF
Sbjct: 602 LGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDF 661

Query: 644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 697
           VICQN            +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 662 VICQNPC--------TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 708

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556520|ref|XP_002519294.1| conserved hypothetical protein [Ricinus communis] gi|223541609|gb|EEF43158.1| conserved hypothetical protein [Ricinus communis]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/688 (54%), Positives = 473/688 (68%), Gaps = 46/688 (6%)

Query: 8   NNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSL 67
           +NGE     K  VPKPE+LDF+ P+D   +S +  GE  ASSS S++RS   GMGF PSL
Sbjct: 30  HNGETSSNQKTTVPKPEMLDFDFPSDFIYSSQL--GETAASSSASDVRSFLTGMGFLPSL 87

Query: 68  VDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKE 127
           VDKVI+E G+DNVDLLLE L+E +  Q+SNSQSSDSLDTLF DKDA++PPE S   QPKE
Sbjct: 88  VDKVIQENGEDNVDLLLEILMECSDPQKSNSQSSDSLDTLFNDKDASNPPEYSKFGQPKE 147

Query: 128 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKET 187
           EP+V   G    KRASLL MNFS  EVDFA++KLG DAPV E+VDFITAAQ++ NF++E 
Sbjct: 148 EPDVF--GFDDSKRASLLHMNFSAEEVDFAMEKLGTDAPVDEIVDFITAAQVAANFDEER 205

Query: 188 DDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 247
           DD    +   N+  S  +                + + V+   E F  +           
Sbjct: 206 DDELEHDVEQNKYCSRHSR--------------MNPSHVARGGESFNME----------- 240

Query: 248 SGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQ 307
                 D  R  SY   + K E  S + VS+S  +N  E  RGKRPK+EY + +SN  +Q
Sbjct: 241 ----IRDEQRRDSYG--RKKPENLSQEAVSRSSNLNLEEIHRGKRPKQEYTEGYSN--TQ 292

Query: 308 FQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSINKV 366
            +H  F+EN + + PK E   DSS   +S+W EEKV    + + + +      C+S++++
Sbjct: 293 DEHFGFEENYEEEGPKPEYTADSSFSFESAWVEEKVDTEITGFRIPREPKFKSCKSVDRM 352

Query: 367 VAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH 426
           VA+PPYF YGNV  VS+D W K+S FLY++EPEFVN+Q+FSALSR+EGY+HNLPT NRFH
Sbjct: 353 VAKPPYFLYGNVATVSLDTWGKISQFLYAVEPEFVNTQFFSALSRKEGYVHNLPTENRFH 412

Query: 427 IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQ 486
           I P+PPM+I DA+PH KKWWPSWDTRK LS IN  T+G+SQLC+R  ++L DSRG++SSQ
Sbjct: 413 ILPKPPMSILDAMPHIKKWWPSWDTRKQLSFINYETNGLSQLCDRLGRMLTDSRGLISSQ 472

Query: 487 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQ 546
           Q+RDILH   KLNLVWVG +K+ P++PEH+ELILGYP NHTQ    SLT RL +LR+ FQ
Sbjct: 473 QKRDILHHCHKLNLVWVGLHKVRPIEPEHLELILGYPLNHTQTTEGSLTERLHALRYSFQ 532

Query: 547 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 606
            DTLGYHLSVLKSMFP G+T+LS+FSGIGGAEV LHRLGI +KGV+S+ETSET R+IL+ 
Sbjct: 533 IDTLGYHLSVLKSMFPEGITVLSLFSGIGGAEVALHRLGIHMKGVVSVETSETKRKILRM 592

Query: 607 WWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPK 666
           WW +SGQTGEL QIEDIQ LTTKK + LI + G  DFVICQ        S     S +PK
Sbjct: 593 WWRNSGQTGELEQIEDIQKLTTKKIDRLIERFGGFDFVICQ--------SPCTCASGNPK 644

Query: 667 MAAESDNLPDFDFSLYYEFVRVVQRVRS 694
           M   +D     DFSL+ EFVRV+QRVR+
Sbjct: 645 MEQRADARSALDFSLFCEFVRVLQRVRT 672

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112050|ref|XP_002316067.1| DNA methyltransferase [Populus trichocarpa] gi|222865107|gb|EEF02238.1| DNA methyltransferase [Populus trichocarpa]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/648 (54%), Positives = 459/648 (70%), Gaps = 42/648 (6%)

Query: 48  SSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTL 107
           SSS S LRS F  MG+SPSLV++VIEE G+DNVDLLLE L+E + LQ+ NSQSSDSLD L
Sbjct: 1   SSSRSYLRSFFTEMGYSPSLVNRVIEENGEDNVDLLLEILMECSGLQKPNSQSSDSLDCL 60

Query: 108 FGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPV 167
           F D+  +SPP+ ST+   KEEP+V DE ++ +KR SLL MNF   EV+ A+DKLG++AP+
Sbjct: 61  FDDRGESSPPKYSTVTGVKEEPDVFDE-VYDDKRVSLLKMNFPAKEVELAMDKLGENAPI 119

Query: 168 YELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVS 227
            E++DFI AAQI+ N ++ET+D P  +    ED +DETLYGTM+ TL LL MGFSEN+VS
Sbjct: 120 NEIIDFIIAAQIANNLDRETEDMPDIDAENKEDVNDETLYGTMDKTLCLLNMGFSENEVS 179

Query: 228 LAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSET 287
           LAI+ +                              VK +TE C  D + QSR MNT ET
Sbjct: 180 LAIDNW------------------------------VKSETEDCRRDAILQSRDMNTKET 209

Query: 288 SRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNS 346
            +GKRP++E+ + +    +Q +H   +EN  G++PKQE    SSS+ +  W EEKV  ++
Sbjct: 210 RKGKRPRQEHIEGYQE--AQPRHDSLEENCAGEQPKQEYDYGSSSYFEHEWVEEKVNSDT 267

Query: 347 SRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYF 406
           + +GM + F  NPC+ ++++ A+PPYFFYGNV   S D W K+S FLY +EPEFV++Q+F
Sbjct: 268 TTFGMPKPFKCNPCKILDQIAAKPPYFFYGNVATASSDTWGKISQFLYGIEPEFVDTQFF 327

Query: 407 SALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGIS 466
           SALSRREGY+HNLPT NR HI P+PP+T++D +P TKKWWPSWD RK +SC N  +SG S
Sbjct: 328 SALSRREGYIHNLPTENRSHILPKPPITLEDLMPSTKKWWPSWDARKKMSCRNFDSSGSS 387

Query: 467 QLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNH 526
           QLC+   ++L DSRG+LS++QQRD+L   + LNL+WVG  KL P++  H+E ILGYP NH
Sbjct: 388 QLCDMLGRMLDDSRGLLSAEQQRDLLRHCQALNLMWVGPNKLSPLESAHLEKILGYPLNH 447

Query: 527 TQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI 586
           T  A   LT R+ SLR+ FQTDTLGYHLSVLKS+FP G+T+LS+FSGIGGAE+TLHRLGI
Sbjct: 448 TLIADYPLTERMYSLRYSFQTDTLGYHLSVLKSIFPQGITVLSLFSGIGGAEITLHRLGI 507

Query: 587 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 646
            LKGV+S+ETSETNRR+LKRWW SSGQTG L QIEDI+ LT+   E L+      DFVIC
Sbjct: 508 HLKGVVSVETSETNRRVLKRWWYSSGQTGRLEQIEDIRKLTSSTVERLVENFVCFDFVIC 567

Query: 647 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 694
           QNS  +         SK P + +  ++   FDF+L+ EFVRV+QRVRS
Sbjct: 568 QNSFTR--------PSKIPGVGSGLESQHFFDFTLFNEFVRVLQRVRS 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519874|ref|XP_003528594.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/696 (53%), Positives = 466/696 (66%), Gaps = 40/696 (5%)

Query: 18  AIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQ 77
            +VPK E LD+ELP     + S  VG+N+ASSSG  LR+ FIGMGF P LVDKVIEE G+
Sbjct: 13  VMVPKTENLDYELPP--YTSFSGDVGDNVASSSGGKLRAFFIGMGFLPCLVDKVIEENGE 70

Query: 78  DNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLH 137
           +N D+LLE L+ Y+ALQ+SNSQSS SLD+LF DKD   PPEIS + Q KEEP+ +  G+ 
Sbjct: 71  ENSDILLEALLRYSALQKSNSQSSVSLDSLFDDKD---PPEISNVNQAKEEPDELS-GVV 126

Query: 138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGT 197
            + R SLLMMNFSV EV+FA+ KLG +A + ELVDFI A QI++  +KE DD      G 
Sbjct: 127 DDTRGSLLMMNFSVEEVEFAIHKLGDEASIPELVDFIFALQIAKKLKKEPDDITFTYYGR 186

Query: 198 NEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD--- 254
             + ++E L+G M  TLQL EMGFSEN+VS AI+K GS+ PISELA+ IF+ Q  +D   
Sbjct: 187 GNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVM 246

Query: 255 ----------------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYF 298
                            P    Y T +VK E  S +   QS ++N  ET      KEE  
Sbjct: 247 EYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEGFSHEP-PQSSQVNLEETYNDDMVKEEEG 305

Query: 299 DDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNS 357
            D   S    Q++D  EN +GKRPK E  DD  + L+ SW EE+V    +   M +    
Sbjct: 306 IDAFPSNVSDQYLDVVENGRGKRPKYEHDDDPVNCLEPSWVEERVDAVVAE--MSRHPKP 363

Query: 358 NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 417
           NP R ++ V A+PP+F +GNV ++S D W KMS FLY +EPEF N+Q FSA+ R EGY+H
Sbjct: 364 NPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSQFLYGIEPEFANAQSFSAMDRIEGYIH 423

Query: 418 NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 477
           NLP  NRFHI P+PPMTI+DA+P TKKWWP WD+RK LS I   T+GI+Q C+R    L 
Sbjct: 424 NLPVENRFHILPKPPMTIEDAMPQTKKWWPPWDSRKLLSSIYCETNGIAQTCDRLGNFLA 483

Query: 478 DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 537
           DS GVL+S+QQ+DIL    +LNLVW+G +KLGPV+PE +ELILGYP NHT+A   ++  R
Sbjct: 484 DSGGVLTSEQQKDILRYCRRLNLVWIGKFKLGPVEPEQLELILGYPLNHTRATEGNVAER 543

Query: 538 LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 597
           L+SL++CFQTDTLGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHRL IK+K V+S+ETS
Sbjct: 544 LKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLAIKIKAVVSVETS 603

Query: 598 ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 657
           ET R+IL++WW  SGQTG LVQIEDIQ LT+KK E LI K G  D VI QN     P S 
Sbjct: 604 ETKRKILEKWWRQSGQTGTLVQIEDIQKLTSKKLEGLISKFGGFDLVIYQN-----PCSY 658

Query: 658 QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR 693
             S  +          L   DFS++ E VRV+QRVR
Sbjct: 659 SSSRLQ------AGVGLSALDFSVFCECVRVLQRVR 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441506|ref|XP_004138523.1| PREDICTED: uncharacterized protein LOC101206985 [Cucumis sativus]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/754 (51%), Positives = 474/754 (62%), Gaps = 109/754 (14%)

Query: 17  KAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKG 76
           K IVPK E+ DF LP DR    S HVG++ ASSSGSN+R+ FI MGF PSLVD VIE+  
Sbjct: 5   KPIVPKEEVFDFRLPPDRM--YSRHVGDSGASSSGSNVRTFFIDMGFLPSLVDSVIEKNE 62

Query: 77  QDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTM-------------- 122
           Q ++                  QSSDSL+ L   K  ++PP +ST+              
Sbjct: 63  QKSI-----------------PQSSDSLEGLQSGKMGSNPPHVSTVCHKQVQAAQTSKSE 105

Query: 123 --------------------VQPKEEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDK 160
                               V PKEE    D+  HI    +ASLL+MNFS +EVDFA+DK
Sbjct: 106 SSDSLDSLFDDKDAHNEISSVIPKEE---ADDYYHISDTNKASLLVMNFSADEVDFAIDK 162

Query: 161 LGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMG 220
           LG DAP+ ELVDFI AAQI+   EKETDDA   N+   E+ +DETL+ TME TL+LLEMG
Sbjct: 163 LGGDAPLNELVDFIIAAQIAIKLEKETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMG 221

Query: 221 FSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTP---------------RSRSYDTVK 265
           FSEN+VSLAIEKFGS+T +SELAD I +G+I  D P                +R     K
Sbjct: 222 FSENEVSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPSSFGIGGLYTREDYVTK 281

Query: 266 VKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQE 325
           VK E  S  V    R +N     +GKRPKEE  DD  N T++          KGKRPKQE
Sbjct: 282 VKAEESSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN------KHKGKRPKQE 335

Query: 326 SLDDSSSFLDSSW-EEKVKPN--------SSRYGMQQAFN------------SNPCRSIN 364
             DD  S     W E KV P+        SSR  + ++ +            SNP R++ 
Sbjct: 336 YADDLGSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALE 395

Query: 365 KVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 424
           KVV +PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSALSR EGY+HNLP  NR
Sbjct: 396 KVVTKPPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENR 455

Query: 425 FHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLS 484
           FHI P PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QLC+R  K L DS G  S
Sbjct: 456 FHIIPLPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPS 514

Query: 485 SQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHC 544
           S ++RDILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ A +S   RL+ L++C
Sbjct: 515 SHEERDILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYC 574

Query: 545 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604
           FQTD LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI LK V+S+E+S   RRIL
Sbjct: 575 FQTDALGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRIL 634

Query: 605 KRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKD 664
           K+WW SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN     P S+ +S+SK 
Sbjct: 635 KKWWHSSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN-----PCSRCLSSSK- 688

Query: 665 PKMAAESDNLPDFDFSLYYEFVRVVQRVR-SMKR 697
              + +++ +  FDFS++YEFVRV+Q VR +M R
Sbjct: 689 LNQSGDAEGIASFDFSIFYEFVRVLQSVRNTMHR 722

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564666|ref|XP_003550572.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/734 (49%), Positives = 464/734 (63%), Gaps = 77/734 (10%)

Query: 18  AIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQ 77
            +VPK E L +ELP     + S  VG+N+ASSSG  LR+ FIGMGF P LVDKVIEE G+
Sbjct: 13  VMVPKTEDLGYELPP--YTSFSGDVGDNVASSSGGKLRAFFIGMGFLPCLVDKVIEENGE 70

Query: 78  DNVDLLLETLIEYNALQESNSQSSDSLDT------------------------------- 106
           +N D LLE L+ Y+A  +SN  S DSL                                 
Sbjct: 71  ENSDTLLEALLRYSA-HKSNCDSFDSLGVSHNTSRGRSAPNFYPDGHSKEALQKSNSQSS 129

Query: 107 -----LFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKL 161
                LF DKD   PPEIS + Q KEEP+ +  G+  +KR SLLMMNFSV EV+ A+ KL
Sbjct: 130 DSLDSLFDDKD---PPEISNVNQAKEEPDELS-GVIDDKRGSLLMMNFSVEEVELAIHKL 185

Query: 162 GKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGF 221
           G +A + ELVDFI A QI++  +KE DD      G   + ++E L+G M  TLQL EMGF
Sbjct: 186 GDEASIPELVDFIFAWQIAKKLKKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGF 245

Query: 222 SENQVSLAIEKFGSKTPISELADKIFSGQIFLD-------------------TPRSRSYD 262
           SEN+VS AI+K GS+ PISELA+ IF+ Q  +D                    P    Y 
Sbjct: 246 SENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYG 305

Query: 263 TVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRP 322
           T +VK E  S +   QS ++N  ET      KEE   D   S    Q++D  EN +GKRP
Sbjct: 306 TAEVKVEDFSNE-PPQSSQVNLEETYNEDMVKEEEGIDAFPSYVSDQYLDVVENGRGKRP 364

Query: 323 KQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDV 381
           K E  DDS + L+ SW EE+V    +   M +    NP R ++ V A+PP+F +GNV ++
Sbjct: 365 KYEHDDDSITCLEPSWVEERVDVVVAE--MSRRPKPNPSRCLSSVAAKPPFFLFGNVSNI 422

Query: 382 SIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPH 441
           S D W KMS FLY +EPEF N+Q FSAL R EGY+HNLP  NRFHI P+PPMTI+DA+P 
Sbjct: 423 SYDSWTKMSKFLYGIEPEFANAQSFSALDRIEGYIHNLPVENRFHILPKPPMTIEDAMPL 482

Query: 442 TKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLV 501
           TKKWWP WD+RK LS I   T+GI+Q C+R   +L DS GVL+S+ Q+DIL     LNLV
Sbjct: 483 TKKWWPPWDSRKQLSSIYCETNGIAQTCDRLGNILADSGGVLTSELQKDILRYCRGLNLV 542

Query: 502 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 561
           W+G +KLGPV+PE +ELILGYP NHT+A+  ++  RL+SL++CFQTDTLGYHLSVL+ +F
Sbjct: 543 WIGKFKLGPVEPEQLELILGYPLNHTRASEGNVAERLKSLKYCFQTDTLGYHLSVLRPIF 602

Query: 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE 621
           P GLTMLS+FSG+GGAE+ LHRLGIK+K V+S+ETSET R+IL+RWW  SGQTG LVQ+E
Sbjct: 603 PHGLTMLSLFSGLGGAEIALHRLGIKIKVVVSVETSETKRKILERWWRQSGQTGTLVQLE 662

Query: 622 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSL 681
           DIQ LT+KK E LI K G  D VI QN    + +S+ ++             LP  +FS+
Sbjct: 663 DIQKLTSKKLEGLISKFGGFDLVIYQNPCSNL-SSRLLAGV----------GLPALEFSV 711

Query: 682 YYEFVRVVQRVRSM 695
           + E VRV+QR+R M
Sbjct: 712 FCECVRVLQRIRGM 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528407|ref|XP_004171196.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Cucumis sativus]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 345/630 (54%), Positives = 423/630 (67%), Gaps = 61/630 (9%)

Query: 108 FGDKDANSPPEISTMVQPKEEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDKLGKDA 165
           F DKDA++  EIS+++ PKEE    D+  HI    +ASLL+MNFS +EVDFA+DKLG DA
Sbjct: 34  FDDKDAHN--EISSVI-PKEE---ADDYYHISDTNKASLLVMNFSADEVDFAIDKLGGDA 87

Query: 166 PVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQ 225
           P+ ELVDFI AAQI+   EKETDDA   N+   E+ +DETL+ TME TL+LLEMGFSEN+
Sbjct: 88  PLNELVDFIIAAQIAIKLEKETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMGFSENE 146

Query: 226 VSLAIEKFGSKTPISELADKIFSGQIFLDTP----------------RSRSYDTVKVKTE 269
           VSLAIEKFGS+T +SELAD I +G+I  D P                    Y T KVK E
Sbjct: 147 VSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPSSFGIGGLYTPEDYVT-KVKAE 205

Query: 270 YCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDD 329
             S  V    R +N     +GKRPKEE  DD  N T++          KGKRPKQE  DD
Sbjct: 206 ESSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN------KHKGKRPKQEYADD 259

Query: 330 SSSFLDSSW-EEKVKPN--------SSRYGMQQAFN------------SNPCRSINKVVA 368
             S     W E KV P+        SSR  + ++ +            SNP R++ KVV 
Sbjct: 260 LGSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALEKVVT 319

Query: 369 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 428
           +PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSALSR EGY+HNLP  NRFHI 
Sbjct: 320 KPPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENRFHII 379

Query: 429 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 488
           P PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QLC+R  K L DS G  SS Q+
Sbjct: 380 PLPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPSSHQE 438

Query: 489 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 548
           RDILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ A +S   RL+ L++CFQTD
Sbjct: 439 RDILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYCFQTD 498

Query: 549 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608
            LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI LK V+S+E+S   RRILK+WW
Sbjct: 499 ALGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRILKKWW 558

Query: 609 ESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMA 668
            SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN     P S+ +S+SK    +
Sbjct: 559 HSSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN-----PCSRCLSSSK-LNQS 612

Query: 669 AESDNLPDFDFSLYYEFVRVVQRVR-SMKR 697
            +++ +  FDFS++YEFVRV+Q VR +M R
Sbjct: 613 GDAEGIASFDFSIFYEFVRVLQSVRNTMHR 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479111|ref|XP_003609841.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula] gi|355510896|gb|AES92038.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula]

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 360/746 (48%), Positives = 466/746 (62%), Gaps = 84/746 (11%)

Query: 8   NNGENGDKAKAIVPKPEILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGFSPSL 67
           +NG  G     + PK E  D+EL    A +      E  ASSSGS +R  FIGMGF P L
Sbjct: 5   SNGRGG--KNPVFPKTEDFDYELSPYTALSRDFR--ETAASSSGSKVRGFFIGMGFLPGL 60

Query: 68  VDKVIEEKG-----QDNVDLLLETLIEYN------------------------------- 91
           VDKVIEE G     ++N D LLE L+  +                               
Sbjct: 61  VDKVIEENGTLCVSEENSDALLEILLRCSTNGDSSDSLEGSLNTNEHRSIPNFFPNAHSK 120

Query: 92  -ALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFS 150
            ALQ SN +SSDSLD+LF DKD+   PE+S + QPKEE + + E +  + R +LLMMNFS
Sbjct: 121 EALQISNLESSDSLDSLFDDKDS---PEVSMINQPKEEVDEIFEDIE-DSRGTLLMMNFS 176

Query: 151 VNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDK-SDETLYGT 209
             EV+FA+ KLG  APV ELVDFI AAQI++  +KE  +         E + S+E L+G 
Sbjct: 177 AEEVEFAIRKLGNKAPVPELVDFIFAAQIAKKMKKEEAEEDDIKCYVREKEISNEQLFGI 236

Query: 210 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD--------------- 254
           M  TLQL EMGFSEN++S A++K G   PISELA+ IF+ Q  ++               
Sbjct: 237 MAKTLQLFEMGFSENEISSAVDKLGPDVPISELANFIFAEQNGIEYVMEYKYPSGPSYSW 296

Query: 255 ---TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEE-YFDDFSNSTSQFQH 310
                +S  Y T +VK E  S +  SQSR++N  ET  G+R KEE Y D+F +       
Sbjct: 297 IKEEEQSDMYGTAEVKVEDFSHEP-SQSRQVNLGETGTGERVKEEDYIDEFPDDVKP--- 352

Query: 311 VDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQP 370
             F EN + KRPK E  D+S+S LD  W E++  ++    M +   S P RS++ V A+P
Sbjct: 353 -GFMENDRNKRPKYEYDDNSNSSLDPYWVEEMV-DTVVATMSRRNKSTPSRSLSSVAAKP 410

Query: 371 PYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPE 430
           P+F +GNV +++ D W KMS FLY +EPEFVN++ FSAL+R EGY+HNLPT NRF I P+
Sbjct: 411 PFFLFGNVSNITYDSWKKMSQFLYCIEPEFVNTELFSALNRIEGYIHNLPTENRFQILPK 470

Query: 431 PPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRD 490
           PPMTI+DAIP TKKWWP WD+RK L+C    T GI+QLC+R  + L +S G+L+SQQQ+D
Sbjct: 471 PPMTIEDAIPRTKKWWPPWDSRKKLNCNYCETGGITQLCDRLGRALANSGGILTSQQQKD 530

Query: 491 ILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTL 550
           IL     LNLVW G YKLGP++PEH++ ILGYP NHT+     LT RL+ L+H FQTDTL
Sbjct: 531 ILRYCRGLNLVWTGKYKLGPIEPEHLDHILGYPLNHTRTDECDLTERLQLLKHSFQTDTL 590

Query: 551 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610
           GYHLSVLK +FP G+T+LS+FSGIGGAEV LHRLGIK+K ++S+ETS T R+IL++WW S
Sbjct: 591 GYHLSVLKPIFPTGVTLLSIFSGIGGAEVALHRLGIKIKALVSVETSATKRKILEKWWRS 650

Query: 611 SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ-IPNSKQISNSKDPKMAA 669
           SGQ+G LVQIE+IQ LT+KKFE+LI+  G  D VI QN   Q I    Q+          
Sbjct: 651 SGQSGTLVQIEEIQKLTSKKFENLINNFGVFDLVIYQNPCSQPIVRPHQVG--------- 701

Query: 670 ESDNLPDFDFSLYYEFVRVVQRVRSM 695
               L   +FS + E VR++QRVR++
Sbjct: 702 ---GLSAVEFSAFCESVRILQRVRAL 724

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779004|emb|CAN75753.1| hypothetical protein VITISV_038412 [Vitis vinifera]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 296/521 (56%), Positives = 372/521 (71%), Gaps = 33/521 (6%)

Query: 200  DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSR 259
            D ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S 
Sbjct: 1361 DCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSS 1420

Query: 260  SYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRK 318
            +  T ++   +   D  S  + M      R         +++S  + SQ + VD  ++ K
Sbjct: 1421 A--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHK 1478

Query: 319  GKRPKQESLDDSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNS 357
            GKRPKQESLDDSS+++  +W E                     +V    +++GM      
Sbjct: 1479 GKRPKQESLDDSSAYIGPTWJEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKP 1538

Query: 358  NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 417
             PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+H
Sbjct: 1539 MPCKSLDQLVAKPPYFFYGNVXNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIH 1598

Query: 418  NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 477
            NLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L 
Sbjct: 1599 NLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILV 1658

Query: 478  DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 537
            DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  R
Sbjct: 1659 DSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIER 1718

Query: 538  LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 597
            L+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E S
Sbjct: 1719 LQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEIS 1778

Query: 598  ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 657
            ET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN         
Sbjct: 1779 ETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC------- 1831

Query: 658  QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 697
               +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 1832 -TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 1871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	697
TAIR|locus:2089075	710	DRM3 "domains rearranged methy	0.560	0.550	0.478	5.6e-126
TAIR|locus:2222627	626	DRM2 "domains rearranged methy	0.467	0.520	0.430	3.9e-87
TAIR|locus:2150991	624	DRM1 "domains rearranged methy	0.464	0.519	0.4	5.8e-82

TAIR|locus:2089075 DRM3 "domains rearranged methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
 Identities = 200/418 (47%), Positives = 267/418 (63%)

Query:   283 NTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEXXXXXXXXXXXXW-EEK 341
             N  ETSRGKRPK+E  D+  N+  + ++  + +  +GKR + E            W +++
Sbjct:   314 NVGETSRGKRPKDE--DE--NAYPE-EYTGYDD--RGKRLRPEDMGDSSSFMETPWMQDE 366

Query:   342 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 401
              K N+  Y           +S+   VA+ PYFFYG + ++S   W K+S FL+ + PE V
Sbjct:   367 WKDNT--YEFPSVMQPRLSQSLGPKVARRPYFFYGQLGELSPSWWSKISGFLFGIHPEHV 424

Query:   402 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 461
             +++  SAL R EGYLHNLPT NRF+  P P +TIQDA+PH + WWP WD RKH    NSG
Sbjct:   425 DTRLCSALRRTEGYLHNLPTVNRFNTLPNPRLTIQDAMPHMRSWWPQWDIRKHF---NSG 481

Query:   462 T-SGISQ---LCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIE 517
             T S +     LCER  + + + +G  + Q Q  IL      NL+W+    L P++PEH+E
Sbjct:   482 TCSNMKDATLLCERIGRRIAECKGKPTQQDQTLILRHCHTSNLIWIAPNILSPLEPEHLE 541

Query:   518 LILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGA 577
              I+GYP NHT   G  L  RL+   +CFQTDTLGYHLSVLKSMFP GLT+LS+FSGIGGA
Sbjct:   542 CIMGYPMNHTNIGGGRLAERLKLFDYCFQTDTLGYHLSVLKSMFPQGLTVLSLFSGIGGA 601

Query:   578 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 637
             E+ L RLGI LKGV+S+E+   +R ILKRWW++SGQTGELVQIE+I++LT K+ E+L+ +
Sbjct:   602 EIALDRLGIHLKGVVSVESCGLSRNILKRWWQTSGQTGELVQIEEIKSLTAKRLETLMQR 661

Query:   638 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695
              G  DFVICQN    +  SK+ISNS+    A E      FD++L+ EF RV +RVR M
Sbjct:   662 FGGFDFVICQNPSTPLDLSKEISNSE----ACE------FDYTLFNEFARVTKRVRDM 709

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0006306 "DNA methylation" evidence=IMP

TAIR|locus:2222627 DRM2 "domains rearranged methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 146/339 (43%), Positives = 205/339 (60%)

Query:   361 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 420
             RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct:   297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query:   421 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR--D 478
               NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L   +
Sbjct:   357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query:   479 SRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 538
                      QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct:   416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query:   539 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 598
             +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct:   476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query:   599 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 658
              NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct:   536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query:   659 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 697
             +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct:   596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008170 "N-methyltransferase activity" evidence=ISS

GO:0016458 "gene silencing" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2150991 DRM1 "domains rearranged methylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 5.8e-82, Sum P(3) = 5.8e-82
 Identities = 134/335 (40%), Positives = 201/335 (60%)

Query:   363 INKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 422
             I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  
Sbjct:   297 IPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQ 356

Query:   423 NRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGV 482
             NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G 
Sbjct:   357 NRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGE 415

Query:   483 LSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLR 542
                  Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL 
Sbjct:   416 TPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLG 475

Query:   543 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 602
             + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR 
Sbjct:   476 NSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRN 535

Query:   603 ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS 662
             IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +     P +     +
Sbjct:   536 ILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGN 590

Query:   663 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 697
             +  ++    ++      SL++++ R+++ VR   R
Sbjct:   591 RHHRVGLGGEHS-----SLFFDYCRILEAVRRKAR 620

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.37	0.824
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019681001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (691 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	697
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	99.89
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.89
PRK10458	467	DNA cytosine methylase; Provisional	99.87
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.84
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	99.84
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.12
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	98.95
PRK10458	467	DNA cytosine methylase; Provisional	98.31
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.16
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.68
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.64
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.32
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.16
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.13
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.96
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.86
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.82
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.78
PHA03412	241	putative methyltransferase; Provisional	96.74
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	96.71
COG2520	341	Predicted methyltransferase [General function pred	96.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.64
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	96.61
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.45
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.41
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.29
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.29
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.28
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.26
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.25
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.2
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.19
PHA03411	279	putative methyltransferase; Provisional	96.15
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	95.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	95.86
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.83
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	95.76
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.7
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.55
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.48
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	95.47
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.42
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.41
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	95.38
PRK14967	223	putative methyltransferase; Provisional	95.33
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	95.31
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.24
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.2
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.19
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	95.13
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.04
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.97
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	94.95
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	94.94
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	94.92
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	94.84
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.68
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	94.67
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	94.62
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.62
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	94.61
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.4
PRK00117	157	recX recombination regulator RecX; Reviewed	94.39
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.31
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	93.8
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	93.72
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	93.48
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	93.42
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	93.41
PRK14968	188	putative methyltransferase; Provisional	93.29
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	93.24
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	93.16
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	93.1
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	93.07
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	93.03
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	92.98
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	92.84
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	92.76
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	92.65
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	92.62
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	92.54
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	92.45
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	92.43
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	92.26
PRK07402	196	precorrin-6B methylase; Provisional	92.05
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	91.96
COG4123	248	Predicted O-methyltransferase [General function pr	91.95
COG2890	280	HemK Methylase of polypeptide chain release factor	91.78
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	91.43
PRK14135	263	recX recombination regulator RecX; Provisional	91.19
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	90.95
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	90.93
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	90.82
PRK11207	197	tellurite resistance protein TehB; Provisional	90.71
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	90.69
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	90.66
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	90.28
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	90.07
PRK14135	263	recX recombination regulator RecX; Provisional	89.98
KOG1227	351	consensus Putative methyltransferase [General func	89.71
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	89.69
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	89.64
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	89.37
PLN02585	315	magnesium protoporphyrin IX methyltransferase	89.1
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	89.05
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	88.97
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	88.87
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	88.71
KOG2730	263	consensus Methylase [General function prediction o	88.7
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	87.83
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	87.57
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	87.55
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	87.55
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	87.33
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	87.31
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	87.25
KOG2904	328	consensus Predicted methyltransferase [General fun	87.24
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	87.19
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	87.0
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	86.86
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	86.76
PLN02244	340	tocopherol O-methyltransferase	86.55
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	86.34
PRK12335	287	tellurite resistance protein TehB; Provisional	86.08
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	86.04
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	85.93
PRK10742	250	putative methyltransferase; Provisional	85.53
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	85.17
PRK00811	283	spermidine synthase; Provisional	84.89
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	84.37
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	84.29
PRK10258	251	biotin biosynthesis protein BioC; Provisional	84.05
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	84.01
PRK13255	218	thiopurine S-methyltransferase; Reviewed	83.55
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	83.34
PRK05785	226	hypothetical protein; Provisional	83.2
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	82.82
PRK00117	157	recX recombination regulator RecX; Reviewed	82.82
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	82.64
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	82.29
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	82.03
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	81.88
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	81.7
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.49
PLN02233	261	ubiquinone biosynthesis methyltransferase	80.95
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	80.73
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	80.7
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	80.69
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	80.45
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	80.34
PLN03196	487	MOC1-like protein; Provisional	80.18

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.89  E-value=7.5e-24  Score=224.65  Aligned_cols=109  Identities=19%  Similarity=0.341  Sum_probs=94.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      ..+++|||||||||+++||+++||  ++++++|||+.+++||+.++     +...++..||.++..+.+...     ++|
T Consensus         2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~-----~~~~~~~~di~~~~~~~~~~~-----~~D   69 (328)
T COG0270           2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANF-----PHGDIILGDIKELDGEALRKS-----DVD   69 (328)
T ss_pred             CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhC-----CCCceeechHhhcChhhcccc-----CCC
Confidence            358999999999999999999997  67999999999999998754     324466799999998877532     799


Q ss_pred             EEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421          643 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  695 (697)
Q Consensus       643 LVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~  695 (697)
                      +|+||||||+||.+|+            |.|++|+|++||++|+|+|+.+||.
T Consensus        70 vligGpPCQ~FS~aG~------------r~~~~D~R~~L~~~~~r~I~~~~P~  110 (328)
T COG0270          70 VLIGGPPCQDFSIAGK------------RRGYDDPRGSLFLEFIRLIEQLRPK  110 (328)
T ss_pred             EEEeCCCCcchhhcCc------------ccCCcCccceeeHHHHHHHHhhCCC
Confidence            9999999999999754            4689999999999999999999984

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=99.89  E-value=7.2e-24  Score=217.32  Aligned_cols=105  Identities=22%  Similarity=0.396  Sum_probs=87.2

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      ||+|||||||||+++||+++||  ++++|+|+|+.|+++|+.+|.       .+..+||++++.+.|+.      ++|||
T Consensus         1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l   65 (335)
T PF00145_consen    1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL   65 (335)
T ss_dssp             EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred             CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence            5899999999999999999996  679999999999999998764       36689999999886642      59999


Q ss_pred             EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      +||||||+||.+|+            +.|++|+|+.||++|+|+|+.+||..
T Consensus        66 ~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~~~v~~~~Pk~  105 (335)
T PF00145_consen   66 IGGPPCQGFSIAGK------------RKGFDDPRNSLFFEFLRIVKELKPKY  105 (335)
T ss_dssp             EEE---TTTSTTST------------HHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred             EeccCCceEecccc------------ccccccccchhhHHHHHHHhhccceE
Confidence            99999999999865            35788999999999999999999864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK10458 DNA cytosine methylase; Provisional

Probab=99.87  E-value=2.9e-22  Score=221.99  Aligned_cols=126  Identities=17%  Similarity=0.274  Sum_probs=98.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH--------Hh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL  634 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~--------~l  634 (697)
                      .++++|||||||||+++||+++|+  ++|+++|+|+.|++||+.+|..  .+..++..+||++++...+.        ..
T Consensus        87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (467)
T PRK10458         87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH  162 (467)
T ss_pred             CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence            368999999999999999999998  5799999999999999987632  23345567899999854321        11


Q ss_pred             h-hccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCC-CCccchHHHHHHHHHHhcccc
Q 005421          635 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       635 ~-~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~-D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      + ...+++|||+||||||+||.+|+.++    ...|.+.|+. |+|++||++|+|+|+++||.+
T Consensus       163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~----~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~  222 (467)
T PRK10458        163 IRQHIPDHDVLLAGFPCQPFSLAGVSKK----NSLGRAHGFECETQGTLFFDVARIIDAKRPAI  222 (467)
T ss_pred             hhccCCCCCEEEEcCCCCccchhccccc----ccccccccccCCccccHHHHHHHHHHHhCCCE
Confidence            1 13468999999999999999875321    1124445764 799999999999999999864

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.84  E-value=2.4e-21  Score=201.08  Aligned_cols=106  Identities=19%  Similarity=0.369  Sum_probs=91.5

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      ++++||||||||+++||+++|+  ++++++|+|+.|+++|+.+|.     .. ++.+||++++...+      .+++|+|
T Consensus         1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~------~~~~D~l   66 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDF------IPDIDLL   66 (275)
T ss_pred             CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhc------CCCCCEE
Confidence            5799999999999999999997  569999999999999988653     22 56799999987543      3679999


Q ss_pred             EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      +||||||+||.+|+            +.|.+|+|+.||++|+|+|+.+||.+
T Consensus        67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~  106 (275)
T cd00315          67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY  106 (275)
T ss_pred             EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence            99999999999865            34778999999999999999999864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=99.84  E-value=2.6e-21  Score=204.43  Aligned_cols=103  Identities=17%  Similarity=0.361  Sum_probs=88.6

Q ss_pred             ccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 005421          567 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  646 (697)
Q Consensus       567 vLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIG  646 (697)
                      ||||||||||+++||+++||  ++++++|+|+.|+.+|+.+|     ++ .++.+||++++..++       +++|||+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~~~~-------~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISPSDI-------PDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhhhhC-------CCcCEEEe
Confidence            68999999999999999997  56999999999999998754     33 355789999986543       47999999


Q ss_pred             cCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          647 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       647 GpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      |||||+||.+|+            +.|++|+|+.||++|+|+|+.+||.+
T Consensus        66 g~PCq~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~P~~  103 (315)
T TIGR00675        66 GFPCQPFSIAGK------------RKGFEDTRGTLFFEIVRILKEKKPKF  103 (315)
T ss_pred             cCCCcccchhcc------------cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence            999999998754            35778999999999999999999864

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.12  E-value=5e-11  Score=124.28  Aligned_cols=157  Identities=13%  Similarity=0.168  Sum_probs=110.3

Q ss_pred             CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhcccccc-c---cCCCCCCc--CCCCCCC
Q 005421          368 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-H---NLPTTNRF--HIPPEPP  432 (697)
Q Consensus       368 ~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~-h---NLP~~~R~--~~~p~~p  432 (697)
                      .+|++|++|||..+-.    ..+..|.+.|    |.+.+.++|+..| .||.|+|.|+ .   .++...-.  |-.+.++
T Consensus       102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~  181 (275)
T cd00315         102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK  181 (275)
T ss_pred             cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence            4899999999999865    4566776666    6789999999999 7889999995 2   22222111  1122346


Q ss_pred             CccccccCCCCCCCCCcCcccccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhcccceeeecCcccCCCC
Q 005421          433 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD  512 (697)
Q Consensus       433 ~ti~d~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple  512 (697)
                      .|+.|+|     ++..|+.  -..|+++....   ...          .+...            ..-+|..+...+.|+
T Consensus       182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT  229 (275)
T cd00315         182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT  229 (275)
T ss_pred             CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence            8999999     5667776  45677766421   000          10000            001145677899999


Q ss_pred             cchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421          513 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  557 (697)
Q Consensus       513 ~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL  557 (697)
                      +.|+.||+|||++|+-.++ +.+.++|.+||+..+.....+...+
T Consensus       230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i  273 (275)
T cd00315         230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI  273 (275)
T ss_pred             HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence            9999999999999987543 8999999999999888777665433

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=98.95  E-value=1.1e-09  Score=112.79  Aligned_cols=110  Identities=18%  Similarity=0.330  Sum_probs=94.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +++|++|+||+||+-.+|+.+-|+-.+|.|+|++..|-.+|+.     |..+.++-..||+.|+.+++..+     .+++
T Consensus         3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~-----N~h~~L~k~~~I~~lt~kefd~l-----~~~m   72 (338)
T KOG0919|consen    3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAH-----NYHSNLVKTRNIQSLTVKEFDKL-----QANM   72 (338)
T ss_pred             ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhc-----CcccchhhccccceeeHhhhhhc-----ccce
Confidence            5889999999999999999999999999999999999999864     44456667789999999888655     6899


Q ss_pred             EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421          644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  695 (697)
Q Consensus       644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~  695 (697)
                      +.=.||||+|...+            .+..+.|+|++-|.+.+.++-+++..
T Consensus        73 ~lMSPpCQPfTRiG------------~q~D~~D~Rs~aflhil~~lP~~q~L  112 (338)
T KOG0919|consen   73 LLMSPPCQPFTRIG------------LQRDTEDKRSDAFLHILGLLPECQEL  112 (338)
T ss_pred             EeeCCCCCchhhhc------------ccccccCchhHHHHHHHhhhhhhhhh
Confidence            99999999999653            34568999999999999998877643

>PRK10458 DNA cytosine methylase; Provisional

Probab=98.31  E-value=4e-07  Score=102.30  Aligned_cols=56  Identities=9%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             CcccCCCCcchhhHHhcCC--CCCcccCCCChHHHHHhhhhhhccccchhhhcccccc
Q 005421          505 AYKLGPVDPEHIELILGYP--SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM  560 (697)
Q Consensus       505 ~~~~~ple~~E~E~i~GfP--~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~  560 (697)
                      .++++.|+|.|+-||+|||  ..++=...++.++.||.+||+..|+++..++..|+.+
T Consensus       398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~  455 (467)
T PRK10458        398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPK  455 (467)
T ss_pred             cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            3578999999999999995  4333224789999999999999999999888777654

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.16  E-value=2.8e-07  Score=95.06  Aligned_cols=54  Identities=9%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             eecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421          502 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  557 (697)
Q Consensus       502 W~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL  557 (697)
                      ++.+.+.+.|++.|+.||+|||++|+-  ..+.+++++.+||+.-+....++...|
T Consensus       280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i  333 (335)
T PF00145_consen  280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAI  333 (335)
T ss_dssp             EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHh
Confidence            456789999999999999999999986  555669999999999887777665544

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.68  E-value=9.7e-05  Score=65.82  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      |.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.++...... ...++.+|+.++.. .     ...+.+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence            4689999999999999999999 2 45789999999999888876654221 22345677765531 0     1237899


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|++-||.-+..
T Consensus        73 ~Iv~npP~~~~~   84 (117)
T PF13659_consen   73 LIVTNPPYGPRS   84 (117)
T ss_dssp             EEEE--STTSBT
T ss_pred             EEEECCCCcccc
Confidence            999999986543

...

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.64  E-value=7.8e-06  Score=87.31  Aligned_cols=177  Identities=14%  Similarity=0.187  Sum_probs=94.1

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhccccccccCC---CCCCcCCCCC----
Q 005421          367 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE----  430 (697)
Q Consensus       367 ~~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~hNLP---~~~R~~~~p~----  430 (697)
                      ..+|.||++|||..+-.    ..+..|-+-|    |.+...++||..| .||+|+|.|+--.-   ....+ ..|.    
T Consensus        98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~-~~p~~~~~  176 (315)
T TIGR00675        98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNF-EFPKPIYV  176 (315)
T ss_pred             hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCC-CCCCCccc
Confidence            45799999999987643    4566665555    6778899999999 99999999876322   11111 1233    


Q ss_pred             -CCCccccccCCCC----CCCCCcCcccccceeecc-------------CcchhHHHHHHHHHHhhhcCCCchhhhhHHH
Q 005421          431 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSG-------------TSGISQLCERFEKLLRDSRGVLSSQQQRDIL  492 (697)
Q Consensus       431 -~p~ti~d~lp~~~----~~wp~wd~r~kl~ci~t~-------------~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl  492 (697)
                       ...||.|++....    .|+++....+.+..+...             ...........+++..+....  ......+.
T Consensus       177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~  254 (315)
T TIGR00675       177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL  254 (315)
T ss_pred             ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence             2567888774321    111111000000000000             000000000000111100000  00000000


Q ss_pred             HhhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccc
Q 005421          493 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTL  550 (697)
Q Consensus       493 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti  550 (697)
                      ..+. .+.. .-+.+.+.|++.|.-||+|||++|.  |..+.+..+|.+||+.-+...
T Consensus       255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~--f~~s~~~~~~qiGNAVPp~la  308 (315)
T TIGR00675       255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFK--FPVSDSQLYKQAGNAVVVPVI  308 (315)
T ss_pred             eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccE--eCCCHHHHHhhhCCcccHHHH
Confidence            0011 0111 2356778999999999999999996  458999999999999865443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.32  E-value=0.00019  Score=74.48  Aligned_cols=80  Identities=16%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.++|||+||.|.+.+.+.+.  |.   .|+++|+++.+.+..+.+....+   ..+..+|+.+.-.+.      ..+.|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~------~~~~f  154 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA------LRGRV  154 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh------cCCCE
Confidence            458999999999999988754  33   36899999999988887654321   224567765422111      12579


Q ss_pred             cEEEecCCCCcccc
Q 005421          642 DFVICQNSVPQIPN  655 (697)
Q Consensus       642 DLVIGGpPCQ~FS~  655 (697)
                      |+|+.-|||.+.+.
T Consensus       155 DlVv~NPPy~~~~~  168 (251)
T TIGR03704       155 DILAANAPYVPTDA  168 (251)
T ss_pred             eEEEECCCCCCchh
Confidence            99999999998654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.16  E-value=0.00017  Score=77.55  Aligned_cols=176  Identities=14%  Similarity=0.157  Sum_probs=96.4

Q ss_pred             cCCCCccccccccccchh---hHHHHhhhhc----cCCceeecccc-cchhhccccccc-----cCCCCCCcCCCCC---
Q 005421          367 VAQPPYFFYGNVVDVSID---CWVKMSHFLY----SLEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE---  430 (697)
Q Consensus       367 ~~~ppfF~feNV~~~~~~---~w~~Is~fL~----~i~Pe~Vds~~-fsaa~R~Rgy~h-----NLP~~~R~~~~p~---  430 (697)
                      ..+|.||++|||..|-..   .|+.|.+-|.    .+...++||++ --||+|.|-|+.     |+-....-. .+.   
T Consensus       106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~  184 (328)
T COG0270         106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG  184 (328)
T ss_pred             hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence            456799999999999886   8888888774    45566777765 478999999999     776664311 111   


Q ss_pred             CCCcccccc-----CCCCCCCC-CcCcccccceeeccCcchhHHHHHHHHH--------Hhhhc----------CCCchh
Q 005421          431 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEKL--------LRDSR----------GVLSSQ  486 (697)
Q Consensus       431 ~p~ti~d~l-----p~~~~~wp-~wd~r~kl~ci~t~~~~~~~l~~ri~~~--------~~~~~----------~~~~~~  486 (697)
                      ...++.+++     +.+..-|. .+...-+.+-+...      ...++...        .....          .-+...
T Consensus       185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t  258 (328)
T COG0270         185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT  258 (328)
T ss_pred             cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence            022222211     11111000 00000000000000      00000000        00000          000000


Q ss_pred             hhhHHHHhhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhcccc
Q 005421          487 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  558 (697)
Q Consensus       487 ~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK  558 (697)
                      +    .   ...+-.=+-+..-+.|++.|+-+|+|||+.|.=.+  +.+..++.+||+.-+....++..-+.
T Consensus       259 ~----~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~  321 (328)
T COG0270         259 V----R---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAIL  321 (328)
T ss_pred             e----e---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHH
Confidence            0    0   11111122355666799999999999999998765  99999999999888777766654443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.13  E-value=0.00059  Score=68.05  Aligned_cols=99  Identities=22%  Similarity=0.252  Sum_probs=57.4

Q ss_pred             ChHHHHH-hhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421          533 SLTARLE-SLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  611 (697)
Q Consensus       533 s~teR~k-~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~  611 (697)
                      .-++|+| +|-|..+..            --.+.+|||||||.|.+.+=.-.-|.  +.|+.||.++.+.++++.+....
T Consensus        23 PT~drvrealFniL~~~------------~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l   88 (183)
T PF03602_consen   23 PTTDRVREALFNILQPR------------NLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKL   88 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-------------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhccc------------ccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHh
Confidence            3457887 675555432            02468899999999987654445576  45899999999999999988765


Q ss_pred             CCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421          612 GQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  649 (697)
Q Consensus       612 n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP  649 (697)
                      +... ..++..|...    .+..+......||||.--||
T Consensus        89 ~~~~~~~v~~~d~~~----~l~~~~~~~~~fDiIflDPP  123 (183)
T PF03602_consen   89 GLEDKIRVIKGDAFK----FLLKLAKKGEKFDIIFLDPP  123 (183)
T ss_dssp             T-GGGEEEEESSHHH----HHHHHHHCTS-EEEEEE--S
T ss_pred             CCCcceeeeccCHHH----HHHhhcccCCCceEEEECCC
Confidence            4222 1122333221    12222223468999999998

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.96  E-value=0.002  Score=64.37  Aligned_cols=82  Identities=17%  Similarity=0.069  Sum_probs=55.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +-+|||||||.|.+.+.+-..|-.  .|++||+++.+.++++.++...+... ..++.+|+.+.    +..+......+|
T Consensus        50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~d  123 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFDN  123 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCce
Confidence            567999999999999998888863  58999999999999998876543221 12344555321    111111112378


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+=-||=.
T Consensus       124 vv~~DPPy~  132 (189)
T TIGR00095       124 VIYLDPPFF  132 (189)
T ss_pred             EEEECcCCC
Confidence            888888753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.86  E-value=0.0013  Score=64.94  Aligned_cols=82  Identities=24%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-CCCCccccccccccChhhHHHhhhccCC-ccE
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS-IDF  643 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-~~g~li~~~DI~~Lt~~~I~~l~~~~g~-~DL  643 (697)
                      +|||+|||+||=++.|.+.+   ..|+|||+|+......+.+-.-.+ .....++.+|..++-..    +  .... +|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~   72 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV   72 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred             EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence            58999999999999999996   458999999998887776433221 00112334554432211    0  1122 799


Q ss_pred             EEecCCCCccccC
Q 005421          644 VICQNSVPQIPNS  656 (697)
Q Consensus       644 VIGGpPCQ~FS~a  656 (697)
                      |+..||=-+.+..
T Consensus        73 vFlSPPWGGp~Y~   85 (163)
T PF09445_consen   73 VFLSPPWGGPSYS   85 (163)
T ss_dssp             EEE---BSSGGGG
T ss_pred             EEECCCCCCcccc
Confidence            9999998887664

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.82  E-value=0.0025  Score=64.76  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +..+=+|+|+|||+|.+++-+-+.+ +.+.|+|+|+++.|..-++.+-...+-.+.+ ++.+|.+++..         .+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~  168 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG  168 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence            4557789999999999999887733 2256899999999999888765432222222 34567665543         24


Q ss_pred             CccEEEecCCCC
Q 005421          640 SIDFVICQNSVP  651 (697)
Q Consensus       640 ~~DLVIGGpPCQ  651 (697)
                      .+|-|+-|.|=.
T Consensus       169 ~~drvim~lp~~  180 (200)
T PF02475_consen  169 KFDRVIMNLPES  180 (200)
T ss_dssp             -EEEEEE--TSS
T ss_pred             ccCEEEECChHH
Confidence            689888888743

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.78  E-value=0.003  Score=70.05  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-+|||||||.||+++..-..|.  ..|++||+++.+....+.++..++..  ...++.+|+.+.-    ..+...-+.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~  293 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK  293 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence            357899999999999887666664  35889999999999888877643321  1224556775432    222112347


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      ||+||--||+
T Consensus       294 fDlVilDPP~  303 (396)
T PRK15128        294 FDVIVMDPPK  303 (396)
T ss_pred             CCEEEECCCC
Confidence            9999999997

>PHA03412 putative methyltransferase; Provisional

Probab=96.74  E-value=0.0019  Score=67.42  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             CCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcC--C
Q 005421          509 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I  586 (697)
Q Consensus       509 ~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aG--f  586 (697)
                      ++|+-+|.|-++   .||+-.    ...-.+.+|-.|....+++++... . . .+.+||||.||.|.+.+.+-+.-  -
T Consensus         5 ~~~~~~~~~f~~---~n~~~~----~~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~   74 (241)
T PHA03412          5 KALTYEEKLFII---ENFHEG----AFTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA   74 (241)
T ss_pred             ccccHHHHHHHH---hhcccc----cccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence            356666666665   466652    222335567788888887776432 1 2 36799999999999998876531  1


Q ss_pred             ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCccc
Q 005421          587 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  654 (697)
Q Consensus       587 ~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS  654 (697)
                      +...|.+||||+.+.+..+.+     .....++..|+.....         .+.||+||+=||=-...
T Consensus        75 ~~~~V~aVEID~~Al~~Ar~n-----~~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         75 KPREIVCVELNHTYYKLGKRI-----VPEATWINADALTTEF---------DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCcEEEEEECCHHHHHHHHhh-----ccCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence            112578999999998877643     2223355677754321         14799999999865533

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=96.71  E-value=0.0046  Score=62.56  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=51.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||||||.|.+.+.+-..|.  ..|++||+++.+.+..+.+....+.....++.+|+.+.    +.   ...+.+|+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl  124 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV  124 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence            45899999999999985433343  35789999999999998877654322222344555321    11   11246999


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+--||
T Consensus       125 V~~DPP  130 (199)
T PRK10909        125 VFVDPP  130 (199)
T ss_pred             EEECCC
Confidence            999999

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.64  E-value=0.0028  Score=69.29  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             hhhHHhcCCCCCccc------CCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCce
Q 005421          515 HIELILGYPSNHTQA------AGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL  588 (697)
Q Consensus       515 E~E~i~GfP~~~Tr~------~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~  588 (697)
                      ++|.|-|=++-.|--      |-++.++-      .|+.-....+..+++..++ |-+|+|+|||+|-+++-.-+.|-. 
T Consensus       141 ~le~laGe~~teTihrE~G~~f~vD~~Kv------~Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-  212 (341)
T COG2520         141 RLEVLAGERRTETIHRENGCRFKVDVAKV------YFSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-  212 (341)
T ss_pred             ceEEeecCCCceEEEecCCEEEEEchHHe------EECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-
Confidence            367777777555532      22333332      3666666677777777666 888999999999999999999953 


Q ss_pred             eeEEEeeCCHHHHHHHHHHHhhcCCC-C-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421          589 KGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       589 k~VvaVEid~~ar~t~~~~~~~~n~~-g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC  650 (697)
                      + |+|+|||+.+.+-++.+-. .|.- + ...+++|.+.+..+        .+.+|=||=|-|=
T Consensus       213 ~-V~A~diNP~A~~~L~eNi~-LN~v~~~v~~i~gD~rev~~~--------~~~aDrIim~~p~  266 (341)
T COG2520         213 K-VYAIDINPDAVEYLKENIR-LNKVEGRVEPILGDAREVAPE--------LGVADRIIMGLPK  266 (341)
T ss_pred             e-EEEEecCHHHHHHHHHHHH-hcCccceeeEEeccHHHhhhc--------cccCCEEEeCCCC
Confidence            3 8999999999998887653 2322 2 11356777766542        2678877766663

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.64  E-value=0.0046  Score=58.39  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||-||.|.+...|. +++... -++++|+++.+.+..+......+.....++.+||.++... +.      +.+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence            46899999999999999999 555433 3789999999998888766544333334667899886643 32      589


Q ss_pred             cEEEecCCCCcc
Q 005421          642 DFVICQNSVPQI  653 (697)
Q Consensus       642 DLVIGGpPCQ~F  653 (697)
                      |+|+...++..+
T Consensus        75 D~I~~~~~l~~~   86 (152)
T PF13847_consen   75 DIIISNGVLHHF   86 (152)
T ss_dssp             EEEEEESTGGGT
T ss_pred             eEEEEcCchhhc
Confidence            999998887444

...

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=96.61  E-value=0.0039  Score=46.80  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI  174 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I  174 (697)
                      ..+++..|+.|||+++.+..|+..||-+  ++.=++||
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence            4578999999999999999999999985  67777765

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00165 UBA Ubiquitin associated domain

Probab=96.45  E-value=0.0052  Score=45.62  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421          139 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  175 (697)
Q Consensus       139 ~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~  175 (697)
                      ++++.|+.|||+++.+..|+..||-+  ++.-+++|+
T Consensus         3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~   37 (37)
T smart00165        3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL   37 (37)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence            57899999999999999999999986  576677763

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.41  E-value=0.017  Score=62.00  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=57.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.++||+|||.|++.+.+...|.   .++++|+|+...+..+.+....+.....+..+|+.++...        .+.+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~  249 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV  249 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence            3467899999999999877777775   3689999998776666554433222223456777766421        2479


Q ss_pred             cEEEecCCCCccc
Q 005421          642 DFVICQNSVPQIP  654 (697)
Q Consensus       642 DLVIGGpPCQ~FS  654 (697)
                      |+|+.-|||...+
T Consensus       250 D~Iv~dPPyg~~~  262 (329)
T TIGR01177       250 DAIATDPPYGRST  262 (329)
T ss_pred             CEEEECCCCcCcc
Confidence            9999999986544

This family is found exclusively in the Archaea.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.29  E-value=0.0097  Score=62.14  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||++||.||.++.+..+--+--.|+++|+++...+.++.+....+.....+...|...+..        ..+.||
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  142 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD  142 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence            457899999999999988755311111489999999988888776554322211233445443321        225699


Q ss_pred             EEEecCCCCcccc
Q 005421          643 FVICQNSVPQIPN  655 (697)
Q Consensus       643 LVIGGpPCQ~FS~  655 (697)
                      +|+--+||.+...
T Consensus       143 ~Vl~D~Pcsg~G~  155 (264)
T TIGR00446       143 AILLDAPCSGEGV  155 (264)
T ss_pred             EEEEcCCCCCCcc
Confidence            9999999986654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.29  E-value=0.006  Score=66.94  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||||||+|.+++.+...|-   .|++||+++.+.+..+.+....+-....+..+|+.+....       ..+.+|+
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence            35799999999999998887763   4799999999999888776543221122445566443211       1145899


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+-=||
T Consensus       304 vi~DPP  309 (374)
T TIGR02085       304 VLVNPP  309 (374)
T ss_pred             EEECCC
Confidence            999998

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>cd00194 UBA Ubiquitin Associated domain

Probab=96.28  E-value=0.0095  Score=44.40  Aligned_cols=35  Identities=34%  Similarity=0.407  Sum_probs=30.9

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421          139 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  175 (697)
Q Consensus       139 ~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~  175 (697)
                      ++++.|+.|||+++.+..|+..|+-+  ++.-+++|+
T Consensus         3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            57899999999999999999999985  677778875

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.26  E-value=0.0084  Score=64.07  Aligned_cols=80  Identities=23%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||||||.|.+++.+.+.|-   .|+++|+++.+.+..+.+....+-....++.+|+.++...       ..+.+|+
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence            46899999999999999998774   4789999999988877655433221122445666543210       1246899


Q ss_pred             EEecCCCCcc
Q 005421          644 VICQNSVPQI  653 (697)
Q Consensus       644 VIGGpPCQ~F  653 (697)
                      |+--||+.+.
T Consensus       244 Vv~dPPr~G~  253 (315)
T PRK03522        244 VLVNPPRRGI  253 (315)
T ss_pred             EEECCCCCCc
Confidence            9999997764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.25  E-value=0.013  Score=57.00  Aligned_cols=77  Identities=19%  Similarity=0.231  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      ..-++|||-||.|-+++.+.+.+-.. .|.++|+++.+....+.++...+-....+...|+.+--         ..+.+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence            45679999999999999999988654 48899999999999988776542221223344443211         136899


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+.-||
T Consensus       101 ~Iv~NPP  107 (170)
T PF05175_consen  101 LIVSNPP  107 (170)
T ss_dssp             EEEE---
T ss_pred             EEEEccc
Confidence            9999999

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.20  E-value=0.022  Score=57.63  Aligned_cols=100  Identities=21%  Similarity=0.305  Sum_probs=62.7

Q ss_pred             ChHHHHH-hhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421          533 SLTARLE-SLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  611 (697)
Q Consensus       533 s~teR~k-~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~  611 (697)
                      .-++|.| +|-|.++.+           ++ .+-++||||||-|++.+=.-.-|.  ..++.||.|..+..+++.+-...
T Consensus        24 PT~drVREalFNil~~~-----------~i-~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l   89 (187)
T COG0742          24 PTTDRVREALFNILAPD-----------EI-EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL   89 (187)
T ss_pred             CCchHHHHHHHHhcccc-----------cc-CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh
Confidence            4568887 775555442           23 467799999999987433334465  45789999999999999876544


Q ss_pred             CCCC-CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421          612 GQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  651 (697)
Q Consensus       612 n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ  651 (697)
                      +..+ ..++..|..    .-+. .......||+|.==||=+
T Consensus        90 ~~~~~~~~~~~da~----~~L~-~~~~~~~FDlVflDPPy~  125 (187)
T COG0742          90 GLEGEARVLRNDAL----RALK-QLGTREPFDLVFLDPPYA  125 (187)
T ss_pred             CCccceEEEeecHH----HHHH-hcCCCCcccEEEeCCCCc
Confidence            3212 122333332    1111 112223599999999976

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.19  E-value=0.014  Score=59.95  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=56.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+..         ..+.||
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD  177 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD  177 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence            4578999999999999988876522 357899999999888877654111112223445552211         125799


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+.-||+-+.+
T Consensus       178 ~Iv~npPy~~~~  189 (275)
T PRK09328        178 LIVSNPPYIPEA  189 (275)
T ss_pred             EEEECCCcCCcc
Confidence            999999997654

>PHA03411 putative methyltransferase; Provisional

Probab=96.15  E-value=0.0092  Score=63.68  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             hhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccc
Q 005421          542 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE  621 (697)
Q Consensus       542 gnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~  621 (697)
                      |-.|..+.+.++| ++...  .+-+||||+||+|.+.+.+....-. ..|++||+++.+.+..+..     .+...++.+
T Consensus        46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n-----~~~v~~v~~  116 (279)
T PHA03411         46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRL-----LPEAEWITS  116 (279)
T ss_pred             eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHh-----CcCCEEEEC
Confidence            5567778888887 33332  2358999999999998777543211 2478999999988777643     222335567


Q ss_pred             cccccChhhHHHhhhccCCccEEEecCCCCcccc
Q 005421          622 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  655 (697)
Q Consensus       622 DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~  655 (697)
                      |+.++..         .+.||+|++-||-.....
T Consensus       117 D~~e~~~---------~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411        117 DVFEFES---------NEKFDVVISNPPFGKINT  141 (279)
T ss_pred             chhhhcc---------cCCCcEEEEcCCccccCc
Confidence            7765421         147999999999876543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=95.88  E-value=0.02  Score=63.51  Aligned_cols=83  Identities=12%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||||||.|.+++.|.+.+-   .|+++|+++.+.+..+.+....+.....++.+|+.++    +..+....+.+|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D  364 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD  364 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence            346899999999999999988763   4799999999988887765433222223455666542    111111124589


Q ss_pred             EEEecCCCCc
Q 005421          643 FVICQNSVPQ  652 (697)
Q Consensus       643 LVIGGpPCQ~  652 (697)
                      +|+--||.-+
T Consensus       365 ~vi~dPPr~G  374 (431)
T TIGR00479       365 VLLLDPPRKG  374 (431)
T ss_pred             EEEECcCCCC
Confidence            9999999765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=95.86  E-value=0.019  Score=55.48  Aligned_cols=76  Identities=17%  Similarity=0.048  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-++||++||.|.++..+.+.+-   .++++|+|+.+...++..+...  ....++.+|+.++...        ...+|
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~--------~~~~d   79 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLP--------KLQPY   79 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCcc--------ccCCC
Confidence            345899999999999998888763   4789999999988888765421  1223556777766421        12589


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+|.+|=+
T Consensus        80 ~vi~n~Py~   88 (169)
T smart00650       80 KVVGNLPYN   88 (169)
T ss_pred             EEEECCCcc
Confidence            999998865

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.83  E-value=0.018  Score=64.50  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.||.++.+.++ +- -..|+++|+++.....++.+....+.....++.+|..++..         .+.|
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f  319 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP  319 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence            3568999999999998766542 21 12489999999988888776654332212234566655431         1469


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |+|+-.+||.+....
T Consensus       320 D~Vl~D~Pcsg~g~~  334 (445)
T PRK14904        320 DAILLDAPCTGTGVL  334 (445)
T ss_pred             CEEEEcCCCCCcchh
Confidence            999999999887654

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=95.76  E-value=0.032  Score=54.29  Aligned_cols=78  Identities=14%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-++|||.||.|.+++.+.+.|.   .|+++|+++...+..+.+.... +....+..+|+.+..          .+.+|+
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~   85 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDV   85 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccE
Confidence            35799999999999999999885   4789999999888777654322 222223345554321          247999


Q ss_pred             EEecCCCCcccc
Q 005421          644 VICQNSVPQIPN  655 (697)
Q Consensus       644 VIGGpPCQ~FS~  655 (697)
                      |+..+|+.....
T Consensus        86 Vi~n~p~~~~~~   97 (179)
T TIGR00537        86 ILFNPPYLPLED   97 (179)
T ss_pred             EEECCCCCCCcc
Confidence            999999986653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.70  E-value=0.024  Score=63.15  Aligned_cols=85  Identities=12%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||||+||.||.++.+.+.+-. ..|+++|+++......+.+....+.. ..++.+|+.++..     +. ..+.||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~~-~~~~fD  315 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----WW-DGQPFD  315 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----hc-ccCCCC
Confidence            3578999999999999888776532 35899999999988888776543322 2345677765421     10 124699


Q ss_pred             EEEecCCCCcccc
Q 005421          643 FVICQNSVPQIPN  655 (697)
Q Consensus       643 LVIGGpPCQ~FS~  655 (697)
                      +|+-.+||-+...
T Consensus       316 ~Vl~D~Pcs~~G~  328 (427)
T PRK10901        316 RILLDAPCSATGV  328 (427)
T ss_pred             EEEECCCCCcccc
Confidence            9999999987543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.55  E-value=0.032  Score=66.15  Aligned_cols=80  Identities=19%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +-+|||||||.||+++.+.+.|..  .|++||+++.+....+.+...++..  ...++.+|+.+.    +..   ..+.|
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~f  609 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQF  609 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCCc
Confidence            568999999999999999998863  5899999999999888877543221  122345565432    111   12579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+||-=||+-.
T Consensus       610 DlIilDPP~f~  620 (702)
T PRK11783        610 DLIFIDPPTFS  620 (702)
T ss_pred             CEEEECCCCCC
Confidence            99999999654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.48  E-value=0.034  Score=62.17  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.||.++.+.++ |=. ..|+++|+++......+.+....+.....++.+|+.++.. .+      .+.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f  321 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF  321 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence            3468999999999999887653 111 2478999999988888776654432222345567765431 11      1579


Q ss_pred             cEEEecCCCCcccc
Q 005421          642 DFVICQNSVPQIPN  655 (697)
Q Consensus       642 DLVIGGpPCQ~FS~  655 (697)
                      |+|+-.+||-++..
T Consensus       322 D~Vl~D~Pcsg~G~  335 (444)
T PRK14902        322 DKILVDAPCSGLGV  335 (444)
T ss_pred             CEEEEcCCCCCCee
Confidence            99999999987654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=95.47  E-value=0.032  Score=62.46  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||||||.|.+++.|.+.+   ..|+++|+++.+.+..+.+-...+.....++.+|+.+...    .+....+.+|
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD  369 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD  369 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence            35689999999999999998877   3578999999998887765432222222345667654321    1000124699


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+--||+.+.
T Consensus       370 ~Vi~dPPr~g~  380 (443)
T PRK13168        370 KVLLDPPRAGA  380 (443)
T ss_pred             EEEECcCCcCh
Confidence            99999998764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.42  E-value=0.052  Score=57.21  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=54.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      .++|||+||.|.+.+.+....-. ..|+++|+++.+....+.+....+... ..++.+|+.+-    +     ....+|+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~-----~~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L-----AGQKIDI  185 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C-----cCCCccE
Confidence            58999999999999888876422 247899999999888877654332211 22334555321    1     0126999


Q ss_pred             EEecCCCCccc
Q 005421          644 VICQNSVPQIP  654 (697)
Q Consensus       644 VIGGpPCQ~FS  654 (697)
                      |+.-||.-+.+
T Consensus       186 IvsNPPyi~~~  196 (284)
T TIGR00536       186 IVSNPPYIDEE  196 (284)
T ss_pred             EEECCCCCCcc
Confidence            99999988764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.41  E-value=0.028  Score=61.56  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=53.0

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh--------
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--------  636 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~--------  636 (697)
                      -++||||||.|++++.+.+..   +.|++||+++.+.+..+.+-...+-....++.+|+.++-.+ +.....        
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence            469999999999999888764   35899999999998888754322211122456677553211 110000        


Q ss_pred             -ccCCccEEEecCCC
Q 005421          637 -KLGSIDFVICQNSV  650 (697)
Q Consensus       637 -~~g~~DLVIGGpPC  650 (697)
                       ....+|+|+=-||=
T Consensus       284 ~~~~~~D~v~lDPPR  298 (362)
T PRK05031        284 LKSYNFSTIFVDPPR  298 (362)
T ss_pred             ccCCCCCEEEECCCC
Confidence             01148999999993

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=95.38  E-value=0.04  Score=45.32  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  645 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI  645 (697)
                      +++++.||.|++...+-+.+  ...++++|+++.+....+............++.+|+.+...       ...+++|+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence            57999999999998888733  24678999999887666532111111122234455554432       1236799999


Q ss_pred             ecCCCCcc
Q 005421          646 CQNSVPQI  653 (697)
Q Consensus       646 GGpPCQ~F  653 (697)
                      ..+||..+
T Consensus        72 ~~~~~~~~   79 (107)
T cd02440          72 SDPPLHHL   79 (107)
T ss_pred             Eccceeeh
Confidence            99998874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14967 putative methyltransferase; Provisional

Probab=95.33  E-value=0.034  Score=56.25  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||++||.|.+.+.+.+.|.  ..++++|+++.+....+.+....+ ....++.+|+.+.    +     ..+.||
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~----~-----~~~~fD  103 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARA----V-----EFRPFD  103 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhh----c-----cCCCee
Confidence            356899999999999998888875  357899999988777666543321 1122344555431    1     125799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+..||-.
T Consensus       104 ~Vi~npPy~  112 (223)
T PRK14967        104 VVVSNPPYV  112 (223)
T ss_pred             EEEECCCCC
Confidence            999988744

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=95.31  E-value=0.055  Score=57.36  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=55.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +.+||||+||.|.+.+.+.+..-.. .|+++|+++.+.+..+.+....+... ..++.+|+.+-    +     ..+.+|
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD  191 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD  191 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence            4689999999999999998764222 47899999999888877654332111 12344565321    1     113699


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+.-||+-+.+
T Consensus       192 ~Iv~NPPy~~~~  203 (284)
T TIGR03533       192 LIVSNPPYVDAE  203 (284)
T ss_pred             EEEECCCCCCcc
Confidence            999999997654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.24  E-value=0.045  Score=58.77  Aligned_cols=80  Identities=14%  Similarity=0.093  Sum_probs=54.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      .++||+.||.|.+.+.+....-. ..|+++|+++.+....+.+....+... ..++.+|+.+.       +  ..+.+|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-------l--~~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-------L--PGRRYDL  204 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-------C--CCCCccE
Confidence            58999999999999998776321 357899999999988887654332111 22344555321       1  1136999


Q ss_pred             EEecCCCCccc
Q 005421          644 VICQNSVPQIP  654 (697)
Q Consensus       644 VIGGpPCQ~FS  654 (697)
                      |+.-||+-+..
T Consensus       205 IvsNPPyi~~~  215 (307)
T PRK11805        205 IVSNPPYVDAE  215 (307)
T ss_pred             EEECCCCCCcc
Confidence            99999987643

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.20  E-value=0.047  Score=61.05  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=58.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||++||.||.+..+..+.-.--.|+++|+++.....++.+....+.....++.+|.+++....    ....+.||
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD  327 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD  327 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence            35789999999999998877642111247899999988877776654433222234456766553110    00125799


Q ss_pred             EEEecCCCCcccc
Q 005421          643 FVICQNSVPQIPN  655 (697)
Q Consensus       643 LVIGGpPCQ~FS~  655 (697)
                      .|+-.+||.+...
T Consensus       328 ~Vl~DaPCSg~G~  340 (434)
T PRK14901        328 RILLDAPCSGLGT  340 (434)
T ss_pred             EEEEeCCCCcccc
Confidence            9999999988544

>smart00165 UBA Ubiquitin associated domain

Probab=95.19  E-value=0.023  Score=42.19  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   88 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL   88 (697)
                      .++.++.|||+++.+.+|++..|. |.+.-++.|+
T Consensus         4 ~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~   37 (37)
T smart00165        4 KIDQLLEMGFSREEALKALRAANG-NVERAAEYLL   37 (37)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence            478999999999999999999987 6888888874

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=95.13  E-value=0.071  Score=62.38  Aligned_cols=101  Identities=24%  Similarity=0.260  Sum_probs=70.8

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCc
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD  133 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s  133 (697)
                      ++++|+.||||++--.||+=-.|..+++.-...|...=.            |.+++|.-     . -.++.+.....+  
T Consensus       574 ~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMd------------Dpd~~~p~-----v-vp~~~~~a~~~~--  633 (763)
T KOG0944|consen  574 VISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMD------------DPDIDDPF-----V-VPGNSPKADARE--  633 (763)
T ss_pred             HHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhcc------------CcccCCce-----e-cCCCCCccccCC--
Confidence            899999999999999999999999999988887775321            11122211     1 111111111100  


Q ss_pred             hhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          134 EGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       134 ~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                        ...+.+..++.|||++..+.+|+.....+  ++..+|+|++.-
T Consensus       634 --~~e~~v~si~smGf~~~qa~~aL~~~n~n--veravDWif~h~  674 (763)
T KOG0944|consen  634 --VDEESVASIVSMGFSRNQAIKALKATNNN--VERAVDWIFSHM  674 (763)
T ss_pred             --CChhHheeeeeecCcHHHHHHHHHhcCcc--HHHHHHHHHhcc
Confidence              02345788999999999999999986554  899999999774

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.04  E-value=0.051  Score=54.81  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.++||+.||.|.+.+.+....-. ..++++|+++.+....+.+....+.....++.+|+.+.-         ..+.+|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence            4568999999999999888876311 257899999999888877654432221224455654311         125799


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+.-||+...+
T Consensus       157 ~Vi~npPy~~~~  168 (251)
T TIGR03534       157 LIVSNPPYIPEA  168 (251)
T ss_pred             EEEECCCCCchh
Confidence            999999988654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.97  E-value=0.029  Score=63.22  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+++|||||+|+|++.|-+..   +-|.+||+++.+....+.+=. .|+.. ..++.+|..++.....     .-..+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~-~n~i~N~~f~~~~ae~~~~~~~-----~~~~~  363 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAA-ANGIDNVEFIAGDAEEFTPAWW-----EGYKP  363 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHH-HcCCCcEEEEeCCHHHHhhhcc-----ccCCC
Confidence            34689999999999999988655   457999999999888776533 23322 2334444444432211     11368


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+==||
T Consensus       364 d~VvvDPP  371 (432)
T COG2265         364 DVVVVDPP  371 (432)
T ss_pred             CEEEECCC
Confidence            99988887

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=94.95  E-value=0.033  Score=60.83  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      ++||||||+|.+++.|...+   +.|++||+++.+....+.+-.
T Consensus       199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~  239 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAK  239 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHH
T ss_pred             cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHH
Confidence            79999999999999997765   458999999998877766543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>cd00194 UBA Ubiquitin Associated domain

Probab=94.94  E-value=0.037  Score=41.18  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.2

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   88 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL   88 (697)
                      .++.++.|||+++.|.+|++..+. |.+.-+++|+
T Consensus         4 ~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~   37 (38)
T cd00194           4 KLEQLLEMGFSREEARKALRATNN-NVERAVEWLL   37 (38)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHh
Confidence            578999999999999999999998 8998899886

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=94.92  E-value=0.092  Score=56.31  Aligned_cols=82  Identities=23%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CC-ccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GE-LVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~-li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +-+||+|||=.||+++..-..|-  +-|++||.++.+....+.++.-++.. .. .++..|+-+.    +.. +.+.+.+
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~f  196 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGRF  196 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-E
T ss_pred             CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCCC
Confidence            56899999999999999989996  45889999999998888877543222 11 2344555432    111 1234789


Q ss_pred             cEEEecCCCCccc
Q 005421          642 DFVICQNSVPQIP  654 (697)
Q Consensus       642 DLVIGGpPCQ~FS  654 (697)
                      |+||-=||  .|+
T Consensus       197 D~IIlDPP--sF~  207 (286)
T PF10672_consen  197 DLIILDPP--SFA  207 (286)
T ss_dssp             EEEEE--S--SEE
T ss_pred             CEEEECCC--CCC
Confidence            99999999  665

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.84  E-value=0.077  Score=54.11  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|+||=||+|=|++|..-+|-  ..|++||+|+.+..+.+.+-..  .-+ ..+...||+++.           +.+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----------~~~  109 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----------GKF  109 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----------Ccc
Confidence            456799999999999999999996  4689999999999999876443  112 224456666554           578


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |.||=-||
T Consensus       110 dtvimNPP  117 (198)
T COG2263         110 DTVIMNPP  117 (198)
T ss_pred             ceEEECCC
Confidence            98887776

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.68  E-value=0.076  Score=59.60  Aligned_cols=86  Identities=14%  Similarity=0.289  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.||.++.+..+ |-. -.|+++|+++...+.++.+....+.....+...|..++..     ..  .+.|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~~--~~~f  308 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----YV--QDTF  308 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----hh--hccC
Confidence            3568999999999999877654 111 2479999999998888876654432222234556654421     11  2469


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |.|+-=+||-++...
T Consensus       309 D~Vl~DaPCsg~G~~  323 (431)
T PRK14903        309 DRILVDAPCTSLGTA  323 (431)
T ss_pred             CEEEECCCCCCCccc
Confidence            999999999988654

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=94.67  E-value=0.023  Score=47.11  Aligned_cols=37  Identities=30%  Similarity=0.487  Sum_probs=27.7

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLIE   89 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~ilE~LLt   89 (697)
                      .++.+|..|||+.+.|..|++..|=.        ..+.|||.||.
T Consensus        11 ~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk   55 (55)
T PF09288_consen   11 DLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK   55 (55)
T ss_dssp             HHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence            48999999999999999999998732        35689999874

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=94.62  E-value=0.04  Score=41.35  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETL   87 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~L   87 (697)
                      .+.+++.|||+++.+.+|++..|. |.+.=+++|
T Consensus         5 ~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L   37 (37)
T PF00627_consen    5 KVQQLMEMGFSREQAREALRACNG-NVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence            578999999999999999999988 888888776

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=94.62  E-value=0.063  Score=59.54  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=51.1

Q ss_pred             CCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +.++||+|||+|.+++-+. ..|.  ..|+++|+++.+.+..+.+...++.....+..+|+..+        ....+.+|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD  127 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD  127 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence            4689999999999998874 4564  45899999999999998876433222222344555332        11124689


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+==||
T Consensus       128 ~V~lDP~  134 (382)
T PRK04338        128 VVDIDPF  134 (382)
T ss_pred             EEEECCC
Confidence            9987665

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=94.61  E-value=0.054  Score=59.23  Aligned_cols=83  Identities=8%  Similarity=0.061  Sum_probs=53.8

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH--h--hhc---
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK---  637 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~--l--~~~---  637 (697)
                      -++||||||.|.+++.|.+..   +.|++||+++.+....+.+....+-....++.+|+.++-......  +  ...   
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            369999999999999888764   358999999999999888765332112224556765543211000  0  000   


Q ss_pred             -cCCccEEEecCCC
Q 005421          638 -LGSIDFVICQNSV  650 (697)
Q Consensus       638 -~g~~DLVIGGpPC  650 (697)
                       ...+|+|+=-||=
T Consensus       276 ~~~~~d~v~lDPPR  289 (353)
T TIGR02143       276 KSYNCSTIFVDPPR  289 (353)
T ss_pred             ccCCCCEEEECCCC
Confidence             0137999999993

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.40  E-value=0.043  Score=62.63  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcC--------CceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  634 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aG--------f~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l  634 (697)
                      .+.+|+|..||.|+|-+++-...        +. ..++++|||+.+....+..+...+..+..++..|.-.-+   ....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~---~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYV---LLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccc---cccc
Confidence            46799999999999988875322        22 457899999999887766554332111112222211100   0000


Q ss_pred             hhccCCccEEEecCCCCcc
Q 005421          635 IHKLGSIDFVICQNSVPQI  653 (697)
Q Consensus       635 ~~~~g~~DLVIGGpPCQ~F  653 (697)
                      ....+.||+|||=||=-..
T Consensus       107 ~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             ccccCcccEEEeCCCcccc
Confidence            0123689999999997654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=94.39  E-value=0.89  Score=43.87  Aligned_cols=124  Identities=17%  Similarity=0.206  Sum_probs=82.9

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE  128 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~  128 (697)
                      .-|+..+...||+++.|+.||+..   |=-|.....+..+...... . -                              
T Consensus        29 ~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~~-~-~------------------------------   76 (157)
T PRK00117         29 AELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRARK-G-Y------------------------------   76 (157)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-C-c------------------------------
Confidence            348999999999999999999876   4335557777777665211 0 0                              


Q ss_pred             CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421          129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  208 (697)
Q Consensus       129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~  208 (697)
                           .  .......|..-||+.+.|..|++++.++.  .+++.-++.-.......                   .+. .
T Consensus        77 -----g--~~~I~~~L~~kGi~~~~I~~~l~~~~~d~--~e~a~~~~~k~~~~~~~-------------------~~~-~  127 (157)
T PRK00117         77 -----G--PRRIRQELRQKGVDREIIEEALAELDIDW--EELARELARKKFRRPLP-------------------DDA-K  127 (157)
T ss_pred             -----h--HHHHHHHHHHcCCCHHHHHHHHHHcCccH--HHHHHHHHHHHcCCCCC-------------------CCH-H
Confidence                 0  44567889999999999999999997332  33333333222211100                   001 1


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 005421          209 TMEITL-QLLEMGFSENQVSLAIEKFGSK  236 (697)
Q Consensus       209 ~m~k~l-~L~~MGFseeEas~AI~rcG~d  236 (697)
                      ...|+. +|..=||+-+.+..||+....+
T Consensus       128 ~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~  156 (157)
T PRK00117        128 EKAKLVRFLARRGFSMDVIQRVLRNALDD  156 (157)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence            224665 9999999999999999876554

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=94.31  E-value=0.079  Score=55.15  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+-||.|.++..+.+.+.   .|+++|+|+.....++.....  .....++.+|+.++.-          ..+|
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d   93 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN   93 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence            356899999999999999999874   378999999988887765422  1122355678776542          2468


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+|-+|=+
T Consensus        94 ~Vv~NlPy~  102 (258)
T PRK14896         94 KVVSNLPYQ  102 (258)
T ss_pred             EEEEcCCcc
Confidence            999877744

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.24  Score=56.71  Aligned_cols=88  Identities=22%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCc
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD  133 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s  133 (697)
                      +++++++||||.+..+||+--.|..|++.-.+.|...-.            |.+.||      +-....+-|    +..+
T Consensus       561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMd------------DPdlnd------P~~~~~~vP----KkDk  618 (749)
T COG5207         561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMD------------DPDLND------PFVPPPNVP----KKDK  618 (749)
T ss_pred             HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhcc------------CcccCC------CCCCCCCCC----cccc
Confidence            799999999999999999999999999999999986321            111222      122222222    2222


Q ss_pred             hhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421          134 EGLHIEKRASLLMMNFSVNEVDFALDKLGKD  164 (697)
Q Consensus       134 ~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d  164 (697)
                      + +...++.+|+.|||......+|+-....+
T Consensus       619 e-VdE~~~~Slle~Gln~n~~Rkal~~~n~d  648 (749)
T COG5207         619 E-VDESKARSLLENGLNPNLCRKALMDMNTD  648 (749)
T ss_pred             c-ccHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence            2 13457899999999999999998876665

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=93.72  E-value=0.032  Score=58.74  Aligned_cols=51  Identities=16%  Similarity=0.372  Sum_probs=46.0

Q ss_pred             ccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421          507 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  557 (697)
Q Consensus       507 ~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL  557 (697)
                      +|+=++|.|+-|++|||.++-=-.++....||++|||+.+|.+++++++.|
T Consensus       286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL  336 (338)
T KOG0919|consen  286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL  336 (338)
T ss_pred             HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence            677889999999999999997667888899999999999999999987765

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=93.48  E-value=0.32  Score=54.44  Aligned_cols=106  Identities=20%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      |=+||+|||=.||+++..-..|-  +-|++||+++.+....+.+..-++..+  ..++.+|+-+.    +....++-..+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f  291 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF  291 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence            67799999999999999999997  357899999999988888765333222  12344555322    22221122389


Q ss_pred             cEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421          642 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  695 (697)
Q Consensus       642 DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~  695 (697)
                      ||||==||  .|+...              .   +. .+++..|.+++.....+
T Consensus       292 DlIilDPP--sF~r~k--------------~---~~-~~~~rdy~~l~~~~~~i  325 (393)
T COG1092         292 DLIILDPP--SFARSK--------------K---QE-FSAQRDYKDLNDLALRL  325 (393)
T ss_pred             cEEEECCc--ccccCc--------------c---cc-hhHHHHHHHHHHHHHHH
Confidence            99999998  566421              1   12 66788888888776543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=93.42  E-value=0.23  Score=55.46  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li--~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      .+-+|||++||.||.++-+.++ + . -.|+++|+++...+.++.+....+-. ..+  ..+|...+..     + ...+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~-----~-~~~~  308 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ-----W-AENE  308 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc-----c-cccc
Confidence            3578999999999999887663 3 2 24799999999888887766543221 111  2234332221     0 0125


Q ss_pred             CccEEEecCCCCccccC
Q 005421          640 SIDFVICQNSVPQIPNS  656 (697)
Q Consensus       640 ~~DLVIGGpPCQ~FS~a  656 (697)
                      .||.|+-.+||.++..-
T Consensus       309 ~fD~VllDaPcSg~G~~  325 (426)
T TIGR00563       309 QFDRILLDAPCSATGVI  325 (426)
T ss_pred             ccCEEEEcCCCCCCccc
Confidence            79999999999998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=93.41  E-value=0.23  Score=49.85  Aligned_cols=44  Identities=20%  Similarity=0.237  Sum_probs=36.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .+.++||+.||.|.+...+...+.   .|+++|+++.+....+....
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~   98 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ   98 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence            467899999999999999988875   46899999998877765443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14968 putative methyltransferase; Provisional

Probab=93.29  E-value=0.26  Score=47.29  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-++||+.||.|.+...+.+.|.   .++++|+++.+....+......+...  ..+..+|..+-    +   .  -..
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~---~--~~~   90 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F---R--GDK   90 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c---c--ccC
Confidence            345799999999999999888874   36889999988776665443221111  22334454321    1   1  126


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      +|+|+..+|+..
T Consensus        91 ~d~vi~n~p~~~  102 (188)
T PRK14968         91 FDVILFNPPYLP  102 (188)
T ss_pred             ceEEEECCCcCC
Confidence            999999998754

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=93.24  E-value=0.2  Score=52.62  Aligned_cols=74  Identities=15%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+=||.|.++..+.+.|-   .|+++|+|+.....++..+..   +...++.+|+.++....+        ..+
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~--------~~~  107 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL--------QPL  107 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc--------Ccc
Confidence            456899999999999999998874   478999999988887764321   233456788887753321        158


Q ss_pred             EEEecCCC
Q 005421          643 FVICQNSV  650 (697)
Q Consensus       643 LVIGGpPC  650 (697)
                      +|||-+|=
T Consensus       108 ~vv~NlPY  115 (272)
T PRK00274        108 KVVANLPY  115 (272)
T ss_pred             eEEEeCCc
Confidence            89998883

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=93.16  E-value=0.2  Score=39.78  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHh--CCCCchHHHHHH
Q 005421          136 LHIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVDF  173 (697)
Q Consensus       136 ~~~~~~~~lv~MGF~eeev~~AI~~~--G~da~~~~Lld~  173 (697)
                      ...+.+..|+.+||++.+|.+|+.+.  +++.++++++--
T Consensus         2 ~~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~   41 (47)
T PF07499_consen    2 ALEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ   41 (47)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            35678999999999999999999999  788777777643

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=93.10  E-value=0.085  Score=52.28  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChhHHH--HHHcCCc------eeeEEEeeCCHHHHHHHHHHHhhcCCCCC-ccccccccccChhhHHH
Q 005421          563 GGLTMLSVFSGIGGAEVT--LHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES  633 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslG--L~~aGf~------~k~VvaVEid~~ar~t~~~~~~~~n~~g~-li~~~DI~~Lt~~~I~~  633 (697)
                      .+-++||-|||.|++-+=  +...++.      ...++++|+++.+.+..+.+-...+.... .+...|.+++.      
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------  101 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------  101 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence            456799999999998643  3344432      00167999999998877776654432211 12344666555      


Q ss_pred             hhhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHH
Q 005421          634 LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR  691 (697)
Q Consensus       634 l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~  691 (697)
                        ...+.+|+||.=||=-      +            |.+....-..||..+++.+.+
T Consensus       102 --~~~~~~d~IvtnPPyG------~------------r~~~~~~~~~ly~~~~~~~~~  139 (179)
T PF01170_consen  102 --LPDGSVDAIVTNPPYG------R------------RLGSKKDLEKLYRQFLRELKR  139 (179)
T ss_dssp             --GTTSBSCEEEEE--ST------T------------SHCHHHHHHHHHHHHHHHHHC
T ss_pred             --cccCCCCEEEECcchh------h------------hccCHHHHHHHHHHHHHHHHH
Confidence              1225799999888721      1            122111224678888777776

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.07  E-value=0.14  Score=50.75  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+++||-||||=++.|+...+-  +.|+++|||+.+..|++++-+.. +-..-+...||.++-.        ..|-||
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEf-EvqidlLqcdildle~--------~~g~fD  116 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEF-EVQIDLLQCDILDLEL--------KGGIFD  116 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHh-hhhhheeeeeccchhc--------cCCeEe
Confidence            478899999999999999999886  56999999999999887643321 1111133456655432        226788


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      ..+=-||
T Consensus       117 taviNpp  123 (185)
T KOG3420|consen  117 TAVINPP  123 (185)
T ss_pred             eEEecCC
Confidence            8776665

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=93.03  E-value=0.16  Score=56.31  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=48.5

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      ++++||+|||+|-+.+-+-.-  |.  +.|+++|+|+.+...++.+....+.....+..+|...+-.       .....|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f  115 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF  115 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence            589999999999776555443  65  4589999999999999887643211111233344433211       112458


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|.==||
T Consensus       116 DvIdlDPf  123 (374)
T TIGR00308       116 HVIDIDPF  123 (374)
T ss_pred             CEEEeCCC
Confidence            88865554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=92.98  E-value=0.33  Score=48.90  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+.||.|.++.-|.+..-+--.|+++|+++......+.+....+.....+..+|..+.-.        ..+.||
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence            467899999999999988776532111378999999988777766554322222244556543211        125799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+-.+++...
T Consensus       149 ~Ii~~~~~~~~  159 (215)
T TIGR00080       149 RIYVTAAGPKI  159 (215)
T ss_pred             EEEEcCCcccc
Confidence            98877766543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=92.84  E-value=0.3  Score=42.98  Aligned_cols=74  Identities=23%  Similarity=0.334  Sum_probs=51.4

Q ss_pred             CCcccccCCCCChhHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 005421          564 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~--aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +-+||||=||.|.+.+.+.+  .|.+   |++||+++......+........ ....++.+|+ ....       ...++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~   70 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP   70 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence            45799999999999999998  7764   78999999998888876522211 2222456777 2211       12357


Q ss_pred             ccEEEecC
Q 005421          641 IDFVICQN  648 (697)
Q Consensus       641 ~DLVIGGp  648 (697)
                      +|+|+...
T Consensus        71 ~D~v~~~~   78 (112)
T PF12847_consen   71 FDLVICSG   78 (112)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEECC
Confidence            99998654

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=92.76  E-value=0.36  Score=42.82  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=47.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+++||.||.|.+..-+-+..=. ..|+++|+++......+.+-...+.....+..+|+......       ..+.+|
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D   90 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD   90 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence            3468999999999999887664211 34789999999888877654433222222333454422110       124789


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+-
T Consensus        91 ~v~~   94 (124)
T TIGR02469        91 RVFI   94 (124)
T ss_pred             EEEE
Confidence            8874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=92.65  E-value=0.26  Score=49.02  Aligned_cols=74  Identities=12%  Similarity=0.132  Sum_probs=50.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.++||+-||.|-+++-+..++-. ..|+++|+++......+....+.+.....++.+|+.++.         ..+.+|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------~~~~fD~  112 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------HEEQFDV  112 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------ccCCccE
Confidence            678999999999888776655422 247899999987777776655433222234566776542         1257999


Q ss_pred             EEec
Q 005421          644 VICQ  647 (697)
Q Consensus       644 VIGG  647 (697)
                      |+..
T Consensus       113 I~s~  116 (181)
T TIGR00138       113 ITSR  116 (181)
T ss_pred             EEeh
Confidence            9864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=92.62  E-value=0.27  Score=53.81  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=49.3

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  645 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI  645 (697)
                      +||||.||.|.++..+.+.+=.. .|.++|+++.+....+.+....+-.. .+...|+.+    .+      .+.+|+|+
T Consensus       199 ~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~----~~------~~~fDlIv  266 (342)
T PRK09489        199 KVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLEG-EVFASNVFS----DI------KGRFDMII  266 (342)
T ss_pred             eEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCC-EEEEccccc----cc------CCCccEEE
Confidence            79999999999998888764222 37899999988887776654332111 223344421    01      25799999


Q ss_pred             ecCCC
Q 005421          646 CQNSV  650 (697)
Q Consensus       646 GGpPC  650 (697)
                      .-||=
T Consensus       267 sNPPF  271 (342)
T PRK09489        267 SNPPF  271 (342)
T ss_pred             ECCCc
Confidence            98873

>TIGR00755 ksgA dimethyladenosine transferase

Probab=92.54  E-value=0.23  Score=51.40  Aligned_cols=75  Identities=17%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+.||.|.++..+.+.+-   .|+++|+|+.....++..+..  .....++.+|+.++....       +...+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~   96 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL   96 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence            456899999999999999999884   378999999998888765432  122235667887665321       11125


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+|..|
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888887

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=92.45  E-value=0.25  Score=52.30  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .+.+|||+.||.|.+++++.++|.  ..|+++|+++.+....+.+..
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~  203 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAE  203 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHH
Confidence            457899999999999999999986  458999999998887777654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=92.43  E-value=0.15  Score=53.77  Aligned_cols=107  Identities=18%  Similarity=0.108  Sum_probs=53.9

Q ss_pred             HhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHHhhcC
Q 005421          539 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG  612 (697)
Q Consensus       539 k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~a------Gf~~k~VvaVEid~~ar~t~~~~~~~~n  612 (697)
                      |.+|..|....++.++.-+-+.. .+-+|+|.+||.|||-+++.+.      -+.-..++++|+++.+....+.+..-++
T Consensus        23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~  101 (311)
T PF02384_consen   23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG  101 (311)
T ss_dssp             TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence            34566666666666554444332 3567999999999998887651      0112357899999998876554221111


Q ss_pred             CCCC--ccccccccccChhhHHHhhh-ccCCccEEEecCCCCcc
Q 005421          613 QTGE--LVQIEDIQALTTKKFESLIH-KLGSIDFVICQNSVPQI  653 (697)
Q Consensus       613 ~~g~--li~~~DI~~Lt~~~I~~l~~-~~g~~DLVIGGpPCQ~F  653 (697)
                      -...  .+..+|.       +..... ....+|+|+|-||=-..
T Consensus       102 ~~~~~~~i~~~d~-------l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 IDNSNINIIQGDS-------LENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHCBGCEEEES-T-------TTSHSCTST--EEEEEEE--CTCE
T ss_pred             ccccccccccccc-------ccccccccccccccccCCCCcccc
Confidence            0011  1223332       111100 13589999999996655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=92.26  E-value=0.23  Score=53.34  Aligned_cols=98  Identities=17%  Similarity=0.114  Sum_probs=63.3

Q ss_pred             Hhhhhhhcc--ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-CCC
Q 005421          539 ESLRHCFQT--DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG  615 (697)
Q Consensus       539 k~Lgnsfqv--dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-~~g  615 (697)
                      |.||-.|=+  ..+..++..+.  ...+-+||++-||.|.++..+...+-   .|+++|+|+.....++......+ ...
T Consensus        12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~   86 (294)
T PTZ00338         12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK   86 (294)
T ss_pred             CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            355666622  23333333332  22456799999999999998888774   37899999999988887554322 122


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421          616 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  651 (697)
Q Consensus       616 ~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ  651 (697)
                      ..++.+|+.++.          +..+|+|++-.|=+
T Consensus        87 v~ii~~Dal~~~----------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         87 LEVIEGDALKTE----------FPYFDVCVANVPYQ  112 (294)
T ss_pred             EEEEECCHhhhc----------ccccCEEEecCCcc
Confidence            235667776543          13578999877755

>PRK07402 precorrin-6B methylase; Provisional

Probab=92.05  E-value=0.41  Score=47.38  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=36.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      .+-+|||++||.|.+++.+.+++-. ..|+++|+++...+..+.+...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            3568999999999999888765321 3578999999998888776543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=91.96  E-value=0.48  Score=47.54  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||+.||.|.+..-+.+. |-. ..|+++|+++...+..+......+.....++.+|+.++.-        ..+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  115 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF  115 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence            4578999999999998877654 321 2478999999887766654332222222234566655431        12579


Q ss_pred             cEEEecCCCCcc
Q 005421          642 DFVICQNSVPQI  653 (697)
Q Consensus       642 DLVIGGpPCQ~F  653 (697)
                      |+|+-+...+.+
T Consensus       116 D~V~~~~~l~~~  127 (231)
T TIGR02752       116 DYVTIGFGLRNV  127 (231)
T ss_pred             cEEEEecccccC
Confidence            999877665543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=91.95  E-value=0.25  Score=52.16  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +-++|||-||+|.+.+.+.+- . + .-+++||+++.+..-.+++-..++.. ...++..||+++....      .+..|
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~-~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------~~~~f  116 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTE-K-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------VFASF  116 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCC-C-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc------ccccc
Confidence            678999999999999888754 3 2 24689999998876555533221111 1224567776654321      23579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+||.-||=-.
T Consensus       117 D~Ii~NPPyf~  127 (248)
T COG4123         117 DLIICNPPYFK  127 (248)
T ss_pred             CEEEeCCCCCC
Confidence            99998887543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=91.78  E-value=0.27  Score=52.35  Aligned_cols=78  Identities=18%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  645 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI  645 (697)
                      +|+||.||.|-+.+++...+-. ..|+++|||+.|.+.-+.+...++-       .++..+..+-++.   ..+.||+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~dlf~~---~~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQSDLFEP---LRGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEeeecccc---cCCceeEEE
Confidence            7999999999999999988754 3689999999999888877654421       2233333311111   235899999


Q ss_pred             ecCCCCccc
Q 005421          646 CQNSVPQIP  654 (697)
Q Consensus       646 GGpPCQ~FS  654 (697)
                      .=||==+-.
T Consensus       182 sNPPYip~~  190 (280)
T COG2890         182 SNPPYIPAE  190 (280)
T ss_pred             eCCCCCCCc
Confidence            999877665

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=91.43  E-value=0.42  Score=51.99  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+.+|||+-||.|.+...|.+.|..   |++||+++......+.+.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~  173 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHA  173 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHH
Confidence            4678999999999999999998864   689999999887777643

>PRK14135 recX recombination regulator RecX; Provisional

Probab=91.19  E-value=2.9  Score=43.67  Aligned_cols=130  Identities=14%  Similarity=0.159  Sum_probs=81.8

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE  128 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~  128 (697)
                      .-|+..|..-||+++.|..||+..   |-=|.....+..+....-...                                
T Consensus        75 ~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~--------------------------------  122 (263)
T PRK14135         75 KEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD--------------------------------  122 (263)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc--------------------------------
Confidence            458899999999999999999865   433556666666553321100                                


Q ss_pred             CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421          129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  208 (697)
Q Consensus       129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~  208 (697)
                       .   .  ..+....|...||+.+.|..||+++-++.-++.+..++-.  .......       .+           ...
T Consensus       123 -~---g--~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k--~~~~~~~-------~~-----------~~~  176 (263)
T PRK14135        123 -K---G--PRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEK--LLKKYQK-------LP-----------FKA  176 (263)
T ss_pred             -c---c--hHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHH--HHHHhcC-------CC-----------HHH
Confidence             0   0  3456788999999999999999998554323322222111  1111000       00           001


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 005421          209 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI  239 (697)
Q Consensus       209 ~m~k~l-~L~~MGFseeEas~AI~rcG~da~i  239 (697)
                      .-.|+. +|..-||+.+.+..|++.+..+...
T Consensus       177 ~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~  208 (263)
T PRK14135        177 LKQKIIQSLLTKGFSYEVIKAALEELDLEQDE  208 (263)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHcccCCCh
Confidence            124555 8999999999999999999765433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=90.95  E-value=0.37  Score=49.83  Aligned_cols=52  Identities=23%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .|..+...+-+|||+-||.|.+.+.+.+.|..  .|+++|+|+.+.+..+.+..
T Consensus       112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence            33333446789999999999999999999864  38899999999877776543

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=90.93  E-value=1.2  Score=52.81  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=62.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCcccccccc-chh-hhHHH
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLY-GTM-EITLQ  215 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~-~~m-~k~l~  215 (697)
                      .-.+.+|+.||||++-..+|+=--|... .+.--.+|+.+-.    +.+-++..--....     ...-- ..- +-.-+
T Consensus       572 ~s~i~qL~~MGFp~eac~rAly~tgN~~-aEaA~NWl~~HMd----Dpd~~~p~vvp~~~-----~~a~~~~~~e~~v~s  641 (763)
T KOG0944|consen  572 RSVISQLVEMGFPEEACRRALYYTGNSG-AEAASNWLMEHMD----DPDIDDPFVVPGNS-----PKADAREVDEESVAS  641 (763)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhhhcCcc-HHHHHHHHHHhcc----CcccCCceecCCCC-----CccccCCCChhHhee
Confidence            4478999999999999999998888876 3555555554421    00001110000000     00000 011 22338


Q ss_pred             HHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 005421          216 LLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  250 (697)
Q Consensus       216 L~~MGFseeEas~AI~rcG~da~i~eLvD~I~Aaq  250 (697)
                      ++.|||+..+|..|+.-.  +..|+.+||-|++--
T Consensus       642 i~smGf~~~qa~~aL~~~--n~nveravDWif~h~  674 (763)
T KOG0944|consen  642 IVSMGFSRNQAIKALKAT--NNNVERAVDWIFSHM  674 (763)
T ss_pred             eeeecCcHHHHHHHHHhc--CccHHHHHHHHHhcc
Confidence            999999999999888754  557999999998743

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=90.82  E-value=0.46  Score=53.72  Aligned_cols=77  Identities=12%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.++|||.||.|-+.+.+.+..-. ..|.++|+++.+.+..+.+....+ ....++.+|+.+..   +    ...+.+|+
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FDL  322 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWDI  322 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCccE
Confidence            458999999999998887654211 247899999999988887664332 11223456654321   0    01246999


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+.-||
T Consensus       323 IVSNPP  328 (423)
T PRK14966        323 IVSNPP  328 (423)
T ss_pred             EEECCC
Confidence            998777

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=90.71  E-value=0.76  Score=45.90  Aligned_cols=42  Identities=19%  Similarity=0.129  Sum_probs=35.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      +-+|||+=||.|.+++-|.+.|++   |.++|+++.+....+..-
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~   72 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIK   72 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHH
Confidence            468999999999999999999974   688999998877766543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=90.69  E-value=0.68  Score=46.49  Aligned_cols=81  Identities=20%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI-~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||-||.|.++..+.+.. +-..|++||+++......+......+.....++.+|+ ..+.     ... ..+.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~~-~~~~~  112 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DMF-PDGSL  112 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HHc-Ccccc
Confidence            45789999999999999886642 2235899999999888877665433222223455666 3322     111 12579


Q ss_pred             cEEEecCCC
Q 005421          642 DFVICQNSV  650 (697)
Q Consensus       642 DLVIGGpPC  650 (697)
                      |+|+--+|.
T Consensus       113 D~V~~~~~~  121 (202)
T PRK00121        113 DRIYLNFPD  121 (202)
T ss_pred             ceEEEECCC
Confidence            999876554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=90.66  E-value=0.8  Score=44.89  Aligned_cols=46  Identities=17%  Similarity=0.160  Sum_probs=36.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .+-++||+.||.|.+++.+.+.+-. ..|+++|+++.+....+.+..
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~   76 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQ   76 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            4568999999999999988776532 247899999998887776544

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=90.28  E-value=0.77  Score=45.79  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      .+.+|||+-||.|.+...|.+.|..   |.++|+++......+..+..
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE  107 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence            4578999999999999999888853   78999999988777766543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=90.07  E-value=0.85  Score=45.38  Aligned_cols=45  Identities=20%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+-+|||+.||.|.+++.+-+ +|-. ..|+++|+++......+.+-
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~   85 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNA   85 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHH
Confidence            456899999999999988754 3421 24789999998877666543

>PRK14135 recX recombination regulator RecX; Provisional

Probab=89.98  E-value=3.8  Score=42.75  Aligned_cols=136  Identities=16%  Similarity=0.257  Sum_probs=77.8

Q ss_pred             CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421           50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP  129 (697)
Q Consensus        50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~  129 (697)
                      +...++..|...||+.+.|..||++.-+++.-..+..+... .+.....   -                           
T Consensus       124 g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k-~~~~~~~---~---------------------------  172 (263)
T PRK14135        124 GPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEK-LLKKYQK---L---------------------------  172 (263)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHH-HHHHhcC---C---------------------------
Confidence            34568999999999999999999987443221111111111 1100000   0                           


Q ss_pred             CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH-Hh-hhcccccccCCCCCCCCCCCCCcccccccc
Q 005421          130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT-AA-QISENFEKETDDAPHDNDGTNEDKSDETLY  207 (697)
Q Consensus       130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~-a~-Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~  207 (697)
                      .. .. .......+|..-||+.+.|..|++++..+...++-.+.+. .+ ........     .  +        +   .
T Consensus       173 ~~-~~-~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~~-----~--~--------~---~  232 (263)
T PRK14135        173 PF-KA-LKQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYSK-----Y--D--------G---Y  232 (263)
T ss_pred             CH-HH-HHHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHhc-----C--C--------H---H
Confidence            00 00 1456678899999999999999999875432222222211 01 01111100     0  0        0   1


Q ss_pred             chhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 005421          208 GTMEITL-QLLEMGFSENQVSLAIEKFGSK  236 (697)
Q Consensus       208 ~~m~k~l-~L~~MGFseeEas~AI~rcG~d  236 (697)
                      ....|+. +|..=||+-+.+..++.....+
T Consensus       233 k~k~K~~~~L~rrGF~~~~I~~~l~~~~~~  262 (263)
T PRK14135        233 ELKQKLKQALYRKGFSYDDIDSFLREYGIE  262 (263)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHhccC
Confidence            1235665 9999999999999999887543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=89.71  E-value=0.3  Score=53.05  Aligned_cols=62  Identities=24%  Similarity=0.270  Sum_probs=47.8

Q ss_pred             hccccchhhhccccccCCCCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          545 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       545 fqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlsl-GL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      |+--.+..-++|++ ++..+-.++|||||||=|++ -+-.+|-  +.|+|+|+++.+...|++.-+
T Consensus       177 FS~GN~~EK~Rv~~-~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~  239 (351)
T KOG1227|consen  177 FSRGNIKEKKRVLN-TSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE  239 (351)
T ss_pred             hhcCcHHHHHHhhh-cccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence            55545555555554 34455779999999999999 6779997  569999999999999987543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=89.69  E-value=0.55  Score=47.20  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      +.++.+.++||+=||.|.+++.+.++.-. ..|+++|+++......+......+.....++.+|+.++..         .
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~  110 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E  110 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence            33444789999999999988877653211 3478999999887777765554432222344566655432         2


Q ss_pred             CCccEEEec
Q 005421          639 GSIDFVICQ  647 (697)
Q Consensus       639 g~~DLVIGG  647 (697)
                      +.+|+|+..
T Consensus       111 ~~fDlV~~~  119 (187)
T PRK00107        111 EKFDVVTSR  119 (187)
T ss_pred             CCccEEEEc
Confidence            479999953

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=89.64  E-value=1.1  Score=44.77  Aligned_cols=80  Identities=23%  Similarity=0.204  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||++-||.|.++.-+.+++-   .|+++|+++......+.++...+.....+..+|..+.    +    ...+.||
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----W----PAYAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----C----CcCCCcC
Confidence            467899999999999887777752   4789999999888777776644322222334554321    1    1125799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+-..+|..+
T Consensus       147 ~I~~~~~~~~~  157 (212)
T PRK00312        147 RILVTAAAPEI  157 (212)
T ss_pred             EEEEccCchhh
Confidence            98887776643

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=89.37  E-value=0.92  Score=47.88  Aligned_cols=71  Identities=34%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+++|||.=||.|=++.-+.++|..   |.++|+++.+..+-+.++...+   ..+   |=...+   ++++...-+.||
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~g---v~i---~y~~~~---~edl~~~~~~FD  126 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESG---VNI---DYRQAT---VEDLASAGGQFD  126 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhcc---ccc---cchhhh---HHHHHhcCCCcc
Confidence            4789999999999999999999964   7899999999999988776442   111   112222   333333337899


Q ss_pred             EEE
Q 005421          643 FVI  645 (697)
Q Consensus       643 LVI  645 (697)
                      +|+
T Consensus       127 vV~  129 (243)
T COG2227         127 VVT  129 (243)
T ss_pred             EEE
Confidence            998

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=89.10  E-value=0.81  Score=49.70  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=35.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  607 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~  607 (697)
                      .+.+||||-||.|.+.+.|.+.|.+   |+++|+++...+..+..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~  185 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERR  185 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Confidence            4679999999999999999999864   68999999887666553

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=89.05  E-value=0.86  Score=52.42  Aligned_cols=80  Identities=15%  Similarity=0.065  Sum_probs=50.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +.+|||+.||.|.+.+.+...- +-..|+++|+++.+....+.+....+... ..++.+|+.+       .+  ..+.||
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD  208 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD  208 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence            4679999999999988775431 11247899999999888877654332111 1123344321       11  124799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+..||=-+.
T Consensus       209 lIvsNPPYi~~  219 (506)
T PRK01544        209 FIVSNPPYISH  219 (506)
T ss_pred             EEEECCCCCCc
Confidence            99999885543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=88.97  E-value=0.95  Score=46.71  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||+=||.|.++..|.+.|.+   |+++|+++......+......+... ..++.+|+.++..     .  ..+.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP  112 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence            45679999999999999999999864   6889999998877776543222111 1234566665432     1  1257


Q ss_pred             ccEEEecCC
Q 005421          641 IDFVICQNS  649 (697)
Q Consensus       641 ~DLVIGGpP  649 (697)
                      ||+|+....
T Consensus       113 fD~V~~~~v  121 (255)
T PRK11036        113 VDLILFHAV  121 (255)
T ss_pred             CCEEEehhH
Confidence            898886543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=88.87  E-value=0.81  Score=51.02  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=50.1

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~----li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      -+||||.||.|-+.+.+.+.+=. ..|.+||+++.+....+.++... ....    .+...|+-+       .+  ..+.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~  298 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR  298 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence            37999999999999888876422 24789999999988888776533 2211    122333311       11  1247


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      ||+|+.-||.
T Consensus       299 fDlIlsNPPf  308 (378)
T PRK15001        299 FNAVLCNPPF  308 (378)
T ss_pred             EEEEEECcCc
Confidence            9999998885

>TIGR00478 tly hemolysin TlyA family protein

Probab=88.71  E-value=0.77  Score=47.79  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH-HHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~-t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-++||+-||.||++..+.+.|.  +.|++||+++.-.. .++.     +..-......+|+.++.+++.   ..+..+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~  144 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF  144 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence            466899999999999999999985  56899999985322 2221     111112345677766655542   133456


Q ss_pred             cEEEec
Q 005421          642 DFVICQ  647 (697)
Q Consensus       642 DLVIGG  647 (697)
                      |+++-.
T Consensus       145 DvsfiS  150 (228)
T TIGR00478       145 DVSFIS  150 (228)
T ss_pred             eEEEee
Confidence            766643

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2730 consensus Methylase [General function prediction only]

Probab=88.70  E-value=0.63  Score=48.86  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-Ccccccccccc
Q 005421          548 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL  626 (697)
Q Consensus       548 dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~L  626 (697)
                      .-++.|+.--+.-.-+.-.+||-|||+||-++=|-.-|-.   |+++|||+.-..--+.+-+-.+-+. .-++++|+-++
T Consensus        79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~  155 (263)
T KOG2730|consen   79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL  155 (263)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence            3344454333332325567999999999999999998853   7899999986544443211111111 11345666544


Q ss_pred             ChhhHHHhhhccCCccEEEecCCCCccccC
Q 005421          627 TTKKFESLIHKLGSIDFVICQNSVPQIPNS  656 (697)
Q Consensus       627 t~~~I~~l~~~~g~~DLVIGGpPCQ~FS~a  656 (697)
                      -. .+. +.  ..-+|+|.+.||=-+-|..
T Consensus       156 ~~-~lq-~~--K~~~~~vf~sppwggp~y~  181 (263)
T KOG2730|consen  156 AS-KLK-AD--KIKYDCVFLSPPWGGPSYL  181 (263)
T ss_pred             HH-HHh-hh--hheeeeeecCCCCCCcchh
Confidence            21 111 11  1237899998887776543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=87.83  E-value=1.2  Score=39.08  Aligned_cols=70  Identities=24%  Similarity=0.369  Sum_probs=47.4

Q ss_pred             ccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          567 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       567 vLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      ||||=||.|-....|.+.   |.+ ..+.++|+++.+....+++....+. ...++..|++++..        ..+.+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence            689999999999998876   432 3578999999998887776543322 33456788877632        2358999


Q ss_pred             EEe
Q 005421          644 VIC  646 (697)
Q Consensus       644 VIG  646 (697)
                      |+.
T Consensus        71 v~~   73 (101)
T PF13649_consen   71 VVC   73 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=87.57  E-value=0.93  Score=49.22  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=48.7

Q ss_pred             ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          548 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       548 dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      +|.+.=|.-|..+-..+.+|||+=||.|=|++|..++|-  +-++++|||+.|.++-+.+-.
T Consensus       147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~  206 (300)
T COG2264         147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR  206 (300)
T ss_pred             hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence            344444666666667899999999999999999999997  458999999999988876543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=87.55  E-value=0.77  Score=47.44  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccC
Q 005421          550 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALT  627 (697)
Q Consensus       550 i~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt  627 (697)
                      .+.+|..|-...+ .-++|++.+|+|.-.+.+.++ +-. -.|+++|+++.+.+..+.+|...+... ..++.+|..++ 
T Consensus        56 ~g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-  132 (234)
T PLN02781         56 EGLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-  132 (234)
T ss_pred             HHHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-
Confidence            3444555544443 457999999999866655443 211 247899999999999999988664322 12345666432 


Q ss_pred             hhhHHHhhhc--cCCccEEEecC
Q 005421          628 TKKFESLIHK--LGSIDFVICQN  648 (697)
Q Consensus       628 ~~~I~~l~~~--~g~~DLVIGGp  648 (697)
                         +..+...  .+.||+|+-..
T Consensus       133 ---L~~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        133 ---LDQLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             ---HHHHHhCCCCCCCCEEEECC
Confidence               2222222  25799887553

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=87.55  E-value=2.4  Score=47.46  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcC--------------------------------------CceeeEE
Q 005421          551 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--------------------------------------IKLKGVI  592 (697)
Q Consensus       551 ~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aG--------------------------------------f~~k~Vv  592 (697)
                      +.=+-.|-.+.+. -.++|-|||.|.+-+=.-..|                                      -++..++
T Consensus       180 AaAil~lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~  258 (381)
T COG0116         180 AAAILLLAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY  258 (381)
T ss_pred             HHHHHHHcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence            3333344455554 479999999998754222222                                      1222477


Q ss_pred             EeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEecCCCCccccCCCCCCCCCccccccc
Q 005421          593 SIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAES  671 (697)
Q Consensus       593 aVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r  671 (697)
                      ++|||+...+.-+.+..+......+ +...|++.+...        +..+|+||+-||=                  |.|
T Consensus       259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPY------------------GeR  312 (381)
T COG0116         259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPY------------------GER  312 (381)
T ss_pred             EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCc------------------chh
Confidence            9999999999999888766433322 345677777643        2578999987772                  222


Q ss_pred             CCCCCCccchHHHHHHHHHHh
Q 005421          672 DNLPDFDFSLYYEFVRVVQRV  692 (697)
Q Consensus       672 ~gl~D~R~~Lf~Ey~RIV~~v  692 (697)
                      -|-...-..||-+|.+.+++.
T Consensus       313 lg~~~~v~~LY~~fg~~lk~~  333 (381)
T COG0116         313 LGSEALVAKLYREFGRTLKRL  333 (381)
T ss_pred             cCChhhHHHHHHHHHHHHHHH
Confidence            332222345999999888554

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=87.33  E-value=1.8  Score=45.27  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=47.1

Q ss_pred             chhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEE
Q 005421          514 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI  592 (697)
Q Consensus       514 ~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~-aGf~~k~Vv  592 (697)
                      .-.|+|||.-.-|+-  ++..+...               ++.+.  .+.+.+|||+=||.|+++.-+.+ .|.   .|+
T Consensus        22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~   79 (263)
T PTZ00098         22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH   79 (263)
T ss_pred             hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence            346888887666654  44444333               11121  23467899999999998877744 354   378


Q ss_pred             EeeCCHHHHHHHHHH
Q 005421          593 SIETSETNRRILKRW  607 (697)
Q Consensus       593 aVEid~~ar~t~~~~  607 (697)
                      ++|+++......+..
T Consensus        80 giD~s~~~~~~a~~~   94 (263)
T PTZ00098         80 GVDICEKMVNIAKLR   94 (263)
T ss_pred             EEECCHHHHHHHHHH
Confidence            999999877666553

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=87.31  E-value=0.96  Score=37.72  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDA  165 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da  165 (697)
                      ..+.+..|+.|||+.+-|..|+.+.|-+.
T Consensus         9 ~~~lVd~F~~mGF~~dkVvevlrrlgik~   37 (55)
T PF09288_consen    9 DKDLVDQFENMGFERDKVVEVLRRLGIKS   37 (55)
T ss_dssp             SHHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred             CHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            45678999999999999999999999874

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=87.25  E-value=1.8  Score=43.03  Aligned_cols=83  Identities=19%  Similarity=0.099  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.++|||=||.|.+.+.+.+..= -..++++|+++......++.....+.....++.+|+.++....+     ..+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCcee
Confidence            345799999999999988887642 23578999999876665554443322222245567765432111     124699


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      .|+--+|..
T Consensus        90 ~v~~~~pdp   98 (194)
T TIGR00091        90 KVFLNFPDP   98 (194)
T ss_pred             EEEEECCCc
Confidence            998777643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=87.24  E-value=0.95  Score=48.91  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=51.1

Q ss_pred             cccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          566 TMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       566 tvLSLFSGiGGlslGL-~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      .++||+||.|.+++++ |.++ + -+|.|+|.++.|......+-....-.|....+.-|.  +.+....+....|..|++
T Consensus       151 ~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--e~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  151 HILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--ESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             eEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--ccccccccccccCceeEE
Confidence            6999999999999996 5666 4 468899999999876655433221122221111111  222222222234899999


Q ss_pred             EecCCCC
Q 005421          645 ICQNSVP  651 (697)
Q Consensus       645 IGGpPCQ  651 (697)
                      ++-||--
T Consensus       227 vsNPPYI  233 (328)
T KOG2904|consen  227 VSNPPYI  233 (328)
T ss_pred             ecCCCcc
Confidence            9999864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=87.19  E-value=1.2  Score=45.49  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  604 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~  604 (697)
                      +.+-+||++.||.|--.+-|.+.|+.   |++||+++.+...+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~   72 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF   72 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence            45679999999999999999999985   68999999998754

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=87.00  E-value=1.6  Score=44.38  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=47.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~~~g~  640 (697)
                      +.+-+||||=||.|+++..+.+..-.-..|++||+++..           +.++..++.+||.+... ..|.... ..+.
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence            346689999999999987665542111358999999831           12344467789887642 2232211 2367


Q ss_pred             ccEEEec
Q 005421          641 IDFVICQ  647 (697)
Q Consensus       641 ~DLVIGG  647 (697)
                      +|+|+..
T Consensus       118 ~D~V~S~  124 (209)
T PRK11188        118 VQVVMSD  124 (209)
T ss_pred             CCEEecC
Confidence            9999973

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=86.86  E-value=0.79  Score=47.90  Aligned_cols=77  Identities=21%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||++-.|.|-++..|...|   +-++++|+|+.....++..+.  ....-.++.+|+-+++.....     .....
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~   99 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL   99 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence            56889999999999999999999   458899999999888886443  122233567899888754321     23566


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+|--|
T Consensus       100 ~vv~NlP  106 (262)
T PF00398_consen  100 LVVGNLP  106 (262)
T ss_dssp             EEEEEET
T ss_pred             EEEEEec
Confidence            7787766

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=86.76  E-value=2  Score=42.79  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=48.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.+|||+=||.|-.++-|.+.|++   |+++|+++.+...++......+-. ......|+....   +      .+.+|+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~---~------~~~fD~   97 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA---L------NEDYDF   97 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---c------cCCCCE
Confidence            468999999999999999888974   689999999887776544322211 112223443221   1      146898


Q ss_pred             EEecCCC
Q 005421          644 VICQNSV  650 (697)
Q Consensus       644 VIGGpPC  650 (697)
                      |+...+.
T Consensus        98 I~~~~~~  104 (195)
T TIGR00477        98 IFSTVVF  104 (195)
T ss_pred             EEEeccc
Confidence            8866554

Part of a tellurite-reducing operon tehA and tehB

>PLN02244 tocopherol O-methyltransferase

Probab=86.55  E-value=1.8  Score=47.11  Aligned_cols=74  Identities=23%  Similarity=0.222  Sum_probs=47.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      ..+-+|||+-||.|++..-|.+. |.   .|++||+++......+......+.. ...++.+|+.++.-        .-+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~  185 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDG  185 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCC
Confidence            34578999999999999888764 64   3688999998776655433222111 12244567665431        124


Q ss_pred             CccEEEe
Q 005421          640 SIDFVIC  646 (697)
Q Consensus       640 ~~DLVIG  646 (697)
                      .||+|+.
T Consensus       186 ~FD~V~s  192 (340)
T PLN02244        186 QFDLVWS  192 (340)
T ss_pred             CccEEEE
Confidence            6888875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.34  E-value=2.1  Score=43.41  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=47.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|.++.-+.++ |- -..|+++|+++......+..+...+.....+..+|......        ..+.+
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~f  146 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAPY  146 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCCc
Confidence            4678999999999999776654 31 12478999999988877776654322112234455533211        12568


Q ss_pred             cEEEe
Q 005421          642 DFVIC  646 (697)
Q Consensus       642 DLVIG  646 (697)
                      |+|+-
T Consensus       147 D~I~~  151 (212)
T PRK13942        147 DRIYV  151 (212)
T ss_pred             CEEEE
Confidence            87764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=86.08  E-value=1.8  Score=45.81  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      +||||=||.|...+-|.+.|++   |.++|+++.+...++.....
T Consensus       123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence            8999999999999999888974   68999999988877765443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.04  E-value=2.6  Score=42.32  Aligned_cols=81  Identities=19%  Similarity=0.092  Sum_probs=49.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+.||.|..+.-+.++ +- -..|+++|+++......+.+....+... ..+..+|..+.-.        ..+.
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~  142 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP  142 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence            3578999999999998776653 21 1247899999987766665443322111 1234566654221        1257


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      +|+|+-+..+..
T Consensus       143 fD~Ii~~~~~~~  154 (205)
T PRK13944        143 FDAIIVTAAAST  154 (205)
T ss_pred             ccEEEEccCcch
Confidence            898887665543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=85.93  E-value=2.1  Score=51.24  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=36.6

Q ss_pred             eEEEeeCCHHHHHHHHHHHhhcCCCCC-ccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421          590 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  649 (697)
Q Consensus       590 ~VvaVEid~~ar~t~~~~~~~~n~~g~-li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP  649 (697)
                      .++++|+|+.+....+.+....+.... .+..+|+.++....      ..+.+|+|+.=||
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP  312 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP  312 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence            378999999999999988776543321 24467777664211      1146899997777

>PRK10742 putative methyltransferase; Provisional

Probab=85.53  E-value=2.9  Score=44.41  Aligned_cols=85  Identities=15%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li--~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+|||+|+|-|..++=+-..|..   |..||-++.....++.......+...+-  +..-|+-+..+.+.-+......||
T Consensus        90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD  166 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence            48999999999998888888974   7889999999988887655422211110  112344344444432222224699


Q ss_pred             EEEecCCCCc
Q 005421          643 FVICQNSVPQ  652 (697)
Q Consensus       643 LVIGGpPCQ~  652 (697)
                      ||.-=||=..
T Consensus       167 VVYlDPMfp~  176 (250)
T PRK10742        167 VVYLDPMFPH  176 (250)
T ss_pred             EEEECCCCCC
Confidence            9999887443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=85.17  E-value=1.4  Score=47.59  Aligned_cols=54  Identities=24%  Similarity=0.296  Sum_probs=42.9

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      |..|..+...+-+|||+=||.|=|+++..++|..  .|+++|||+.|.++.+.+-.
T Consensus       152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~  205 (295)
T PF06325_consen  152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAE  205 (295)
T ss_dssp             HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHH
Confidence            3444444555679999999999999999999974  58999999999988877644

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00811 spermidine synthase; Provisional

Probab=84.89  E-value=1.8  Score=46.09  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccChhhHHHhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI  635 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt~~~I~~l~  635 (697)
                      +++-+||+|-+|.|++..-+.+. +.  +.|..||+|+...+..+.|+...+     .+...++.+|..+.-.       
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence            45678999999999998766554 54  468899999999999998875321     1122244566543211       


Q ss_pred             hccCCccEEEecC
Q 005421          636 HKLGSIDFVICQN  648 (697)
Q Consensus       636 ~~~g~~DLVIGGp  648 (697)
                      ...+.+|+|+--.
T Consensus       146 ~~~~~yDvIi~D~  158 (283)
T PRK00811        146 ETENSFDVIIVDS  158 (283)
T ss_pred             hCCCcccEEEECC
Confidence            1235799999754

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=84.37  E-value=2.3  Score=42.90  Aligned_cols=43  Identities=30%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+.++|+|.||.|.+...+.+.|..   ++++|+++......+...
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   90 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHA   90 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHH
Confidence            3678999999999999999888853   688999998876666544

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=84.29  E-value=1.4  Score=43.62  Aligned_cols=76  Identities=14%  Similarity=0.080  Sum_probs=52.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.+||||-||.|.++..+.+.+... .++++|+++......+....    ....++.+|+.++.-        ..+.+|+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~  101 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL  101 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence            4689999999999999999888543 47899999988766654321    111234567665431        1246899


Q ss_pred             EEecCCCCc
Q 005421          644 VICQNSVPQ  652 (697)
Q Consensus       644 VIGGpPCQ~  652 (697)
                      |+....++.
T Consensus       102 vi~~~~l~~  110 (240)
T TIGR02072       102 IVSNLALQW  110 (240)
T ss_pred             EEEhhhhhh
Confidence            997765543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=84.05  E-value=2.2  Score=43.68  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=48.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      .-+|||+=||.|.++.-|...|.   .|+++|+++...+..+..     .....++.+|+.++.-        ..+.||+
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~-----~~~~~~~~~d~~~~~~--------~~~~fD~  106 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQK-----DAADHYLAGDIESLPL--------ATATFDL  106 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhh-----CCCCCEEEcCcccCcC--------CCCcEEE
Confidence            46799999999999988888774   478999999887666542     1112245677765531        1146899


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+...+
T Consensus       107 V~s~~~  112 (251)
T PRK10258        107 AWSNLA  112 (251)
T ss_pred             EEECch
Confidence            886543

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=84.01  E-value=4.7  Score=46.73  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=54.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCC-CC--ccccccccchhhhH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGT-NE--DKSDETLYGTMEIT  213 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~-~E--e~ede~~~~~m~k~  213 (697)
                      +-..+.+|+.||||++...+|+---|..+ .+.-..+|+.+--         |..-.|-|- -+  -+.|..  -+..+.
T Consensus       558 Nqs~I~qL~~mGfp~~~~~rAL~~tgNqD-aEsAMNWLFqHMd---------DPdlndP~~~~~~vPKkDke--VdE~~~  625 (749)
T COG5207         558 NQSLIRQLVDMGFPEEDAARALGITGNQD-AESAMNWLFQHMD---------DPDLNDPFVPPPNVPKKDKE--VDESKA  625 (749)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHhhccCcc-hHHHHHHHHhhcc---------CcccCCCCCCCCCCCccccc--ccHHHH
Confidence            44578999999999999999999999876 4777788875521         111001010 00  011110  022566


Q ss_pred             HHHHhcCCCHHHHHHHHHh
Q 005421          214 LQLLEMGFSENQVSLAIEK  232 (697)
Q Consensus       214 l~L~~MGFseeEas~AI~r  232 (697)
                      .+|++|||....++-|+=-
T Consensus       626 ~Slle~Gln~n~~Rkal~~  644 (749)
T COG5207         626 RSLLENGLNPNLCRKALMD  644 (749)
T ss_pred             HHHHHcCCCHHHHHHHHHH
Confidence            6999999999999987643

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=83.55  E-value=2.6  Score=43.31  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  604 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~  604 (697)
                      +.+-+||++.||.|--.+-|-..|+.   |++||+++.|...+
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~   75 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF   75 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence            34569999999999999999999985   68999999988754

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=83.34  E-value=2.7  Score=48.25  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=57.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||++||-||=+.-+..+ +-. -.|+|+|+++.-.++++.+-...+-....+...|.+++..     .  ..+.|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence            4578999999999999887653 111 1489999999988888876654432222233345443321     1  12469


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |.|+-=.||.+...-
T Consensus       185 D~ILvDaPCSG~G~~  199 (470)
T PRK11933        185 DAILLDAPCSGEGTV  199 (470)
T ss_pred             CeEEEcCCCCCCccc
Confidence            999999999987654

>PRK05785 hypothetical protein; Provisional

Probab=83.20  E-value=2.7  Score=43.11  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=48.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+||||-||.|-+...|.+. |.   .|+++|+++...+.-+.   +    .. ...+|..++.-        .-+.|
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~---~----~~-~~~~d~~~lp~--------~d~sf  111 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLV---A----DD-KVVGSFEALPF--------RDKSF  111 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHh---c----cc-eEEechhhCCC--------CCCCE
Confidence            3578999999999998888877 43   47899999998765542   1    11 23566655531        12579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+|+.+.-.+.
T Consensus       112 D~v~~~~~l~~  122 (226)
T PRK05785        112 DVVMSSFALHA  122 (226)
T ss_pred             EEEEecChhhc
Confidence            99998764443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=82.82  E-value=1.5  Score=42.88  Aligned_cols=39  Identities=33%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  604 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~  604 (697)
                      .+=.|||.|+|.|.-.++..++|-   ..+++|+++..+++.
T Consensus       191 ~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a  229 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIA  229 (231)
T ss_dssp             TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHH
T ss_pred             cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHh
Confidence            355699999999999999999995   368999999876554

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=82.82  E-value=3.5  Score=39.76  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421           50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP  129 (697)
Q Consensus        50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~  129 (697)
                      +.-++...|..-||+.+.|..||++..+ |...++..|+.=.- .   .                    ...    .+  
T Consensus        77 g~~~I~~~L~~kGi~~~~I~~~l~~~~~-d~~e~a~~~~~k~~-~---~--------------------~~~----~~--  125 (157)
T PRK00117         77 GPRRIRQELRQKGVDREIIEEALAELDI-DWEELARELARKKF-R---R--------------------PLP----DD--  125 (157)
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHcCc-cHHHHHHHHHHHHc-C---C--------------------CCC----CC--
Confidence            4556889999999999999999999874 33333333332110 0   0                    000    00  


Q ss_pred             CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421          130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD  164 (697)
Q Consensus       130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d  164 (697)
                       .   ....+.+.+|+.=||+-+.|..||++..++
T Consensus       126 -~---~~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~  156 (157)
T PRK00117        126 -A---KEKAKLVRFLARRGFSMDVIQRVLRNALDD  156 (157)
T ss_pred             -H---HHHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence             0   116678899999999999999999886554

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=82.64  E-value=3.6  Score=40.36  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|++...+-+.+.....++++|+++......+.... . .....+..+|+.++..        ..+.+|
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D  108 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD  108 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence            46789999999999999888777432357899999888777665432 1 1122244567665431        124688


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+-
T Consensus       109 ~i~~  112 (223)
T TIGR01934       109 AVTI  112 (223)
T ss_pred             EEEE
Confidence            7764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=82.29  E-value=3.2  Score=41.26  Aligned_cols=43  Identities=37%  Similarity=0.359  Sum_probs=34.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+.+||||-||.|.+...+.+.|..   ++++|+++......+...
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   87 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA   87 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence            3678999999999999888888863   788999988766665543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.03  E-value=2.3  Score=48.49  Aligned_cols=141  Identities=22%  Similarity=0.274  Sum_probs=82.6

Q ss_pred             hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhh--c---cC-CCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421           55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNAL--Q---ES-NSQSSDSLDTLFGDKDANSPPEISTMVQPKEE  128 (697)
Q Consensus        55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal--~---~s-~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~  128 (697)
                      .+-+++|||-++-...|+.-.-. +++.-+.+|..-.+=  +   +. .++..- +        ..  -.++..      
T Consensus       307 lsllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~-~--------~r--~k~~n~------  368 (568)
T KOG2561|consen  307 LSLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREI-L--------ER--KKYGNT------  368 (568)
T ss_pred             HHHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-H--------HH--HHhcCC------
Confidence            45689999999999999987654 888888887653321  0   00 000000 0        00  000000      


Q ss_pred             CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421          129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  208 (697)
Q Consensus       129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~  208 (697)
                        .+-.-+....+..|++|||..+.|..|+.+.-.+  +..-||.+   |.      ++ |...         .+...+.
T Consensus       369 --~~~~wvn~rs~~rL~~mGyer~la~eaL~r~~Nd--i~~aldll---q~------es-del~---------~n~~~~p  425 (568)
T KOG2561|consen  369 --PMKKWVNPRSLERLVSMGYERELAAEALRRNEND--IQKALDLL---QD------ES-DELE---------SNKPKRP  425 (568)
T ss_pred             --CcccccCHHHHHHHHhcchHhHHHHHHHHhccCc--HHHHHHhc---CC------cc-hhhh---------ccCCCCC
Confidence              0000114456789999999999999999996554  34434431   10      01 1110         1111122


Q ss_pred             -hh--hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 005421          209 -TM--EITLQLLEMGFSENQVSLAIEKFGSK  236 (697)
Q Consensus       209 -~m--~k~l~L~~MGFseeEas~AI~rcG~d  236 (697)
                       +.  .++-.||.|||.+--|..|++-.|..
T Consensus       426 ~~vd~~~la~Lv~mGF~e~~A~~ALe~~gnn  456 (568)
T KOG2561|consen  426 EQVDGISLAELVSMGFEEGKARSALEAGGNN  456 (568)
T ss_pred             cccchhhHHHHHHhccccchHHHHHHhcCCc
Confidence             22  34459999999999999999999986

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=81.88  E-value=3.7  Score=43.83  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||+.||.||=+..+..+-..--.++|+|++..-...++.+-...+.....+...|-+++.....      ...||.
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd~  159 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFDR  159 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEEE
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccch
Confidence            56699999999999877766543223589999999988888876655433322222244443332211      125999


Q ss_pred             EEecCCCCccccC
Q 005421          644 VICQNSVPQIPNS  656 (697)
Q Consensus       644 VIGGpPCQ~FS~a  656 (697)
                      |.-=+||.+....
T Consensus       160 VlvDaPCSg~G~i  172 (283)
T PF01189_consen  160 VLVDAPCSGLGTI  172 (283)
T ss_dssp             EEEECSCCCGGGT
T ss_pred             hhcCCCccchhhh
Confidence            9999999997654

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=81.70  E-value=3.4  Score=45.16  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=45.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.++.-+.+..-.-..|+++|+++......+......+.....++.+|..+...        ..+.+|
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD  151 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD  151 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence            457899999999999887765431111378999999876655544333222222234555543211        124577


Q ss_pred             EEEec
Q 005421          643 FVICQ  647 (697)
Q Consensus       643 LVIGG  647 (697)
                      +|+-+
T Consensus       152 ~Ii~~  156 (322)
T PRK13943        152 VIFVT  156 (322)
T ss_pred             EEEEC
Confidence            76653

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.49  E-value=3.5  Score=47.07  Aligned_cols=90  Identities=19%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCch
Q 005421           55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDE  134 (697)
Q Consensus        55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s~  134 (697)
                      +..+++|||..+++.-|++.+-. |...-|+.|-+-+.         . +        +.|.+.+     |   .+.   
T Consensus       379 ~~rL~~mGyer~la~eaL~r~~N-di~~aldllq~esd---------e-l--------~~n~~~~-----p---~~v---  428 (568)
T KOG2561|consen  379 LERLVSMGYERELAAEALRRNEN-DIQKALDLLQDESD---------E-L--------ESNKPKR-----P---EQV---  428 (568)
T ss_pred             HHHHHhcchHhHHHHHHHHhccC-cHHHHHHhcCCcch---------h-h--------hccCCCC-----C---ccc---
Confidence            44799999999999999998643 77666665533111         0 1        1221221     1   011   


Q ss_pred             hhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          135 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       135 ~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                        -..++..|+.|||.+-.+..|++--|..  .++.+.++.++-
T Consensus       429 --d~~~la~Lv~mGF~e~~A~~ALe~~gnn--~~~a~~~L~~s~  468 (568)
T KOG2561|consen  429 --DGISLAELVSMGFEEGKARSALEAGGNN--EDTAQRLLSASV  468 (568)
T ss_pred             --chhhHHHHHHhccccchHHHHHHhcCCc--HHHHHHHHHHhC
Confidence              2246889999999999999999987775  577777776543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=80.95  E-value=5.3  Score=41.84  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHh---hcCCCCCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~---~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|||+-||.|.+..-+.+. |-. ..|+++|+++...+..+....   ........++.+|+.++.-        .-
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------~~  143 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------DD  143 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--------CC
Confidence            3678999999999998877653 422 247899999998776653211   0011112244567765541        12


Q ss_pred             CCccEEEecC
Q 005421          639 GSIDFVICQN  648 (697)
Q Consensus       639 g~~DLVIGGp  648 (697)
                      +.||+|+-+.
T Consensus       144 ~sfD~V~~~~  153 (261)
T PLN02233        144 CYFDAITMGY  153 (261)
T ss_pred             CCEeEEEEec
Confidence            4699998543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=80.73  E-value=4.4  Score=40.24  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +.+|||+-||.|++...+.+.+-....++++|+++......+.++...+.. ...+...|+.++..        ..+.+|
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D  123 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD  123 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence            578999999999999888877621245789999998877777655432111 12234456655431        124688


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       124 ~I~~  127 (239)
T PRK00216        124 AVTI  127 (239)
T ss_pred             EEEE
Confidence            8874

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=80.70  E-value=1.2  Score=45.45  Aligned_cols=50  Identities=22%  Similarity=0.265  Sum_probs=32.5

Q ss_pred             ccccCC--CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          557 LKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       557 LK~~fp--~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      +.+.+|  ..-+++|+|||.|+..+.+...+   ..|+..|++......++....
T Consensus        12 I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen   12 IIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             HHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence            444556  46789999999999887776545   457889999998887774433

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=80.69  E-value=4.1  Score=41.74  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=48.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||||-||.|.++.-|.+.. +-..|+++|+++...+..+....     ...++.+|+.++..         ...+|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD   95 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD   95 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence            45789999999999998887652 11357899999998777665321     12244566654421         13678


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+.....+
T Consensus        96 ~v~~~~~l~  104 (258)
T PRK01683         96 LIFANASLQ  104 (258)
T ss_pred             EEEEccChh
Confidence            887665443

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=80.45  E-value=2.2  Score=47.59  Aligned_cols=55  Identities=25%  Similarity=0.341  Sum_probs=40.4

Q ss_pred             hhccccccCCCCCcccccCCCCC--hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          553 HLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       553 hLsvLK~~fp~~itvLSLFSGiG--GlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .+++++.-+..++++||-+||+|  |+..+.|-.|.  ..|+++|+|+.+.+.++.+-.
T Consensus        39 ~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~   95 (377)
T PF02005_consen   39 YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE   95 (377)
T ss_dssp             -HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence            35555555556799999999999  99999997785  468999999999999988754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=80.34  E-value=2.4  Score=33.66  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=25.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHhh--CCCCChhhhh
Q 005421          213 TLQLLEMGFSENQVSLAIEKF--GSKTPISELA  243 (697)
Q Consensus       213 ~l~L~~MGFseeEas~AI~rc--G~da~i~eLv  243 (697)
                      +..|+..||++.||..|+.+.  +++.++++++
T Consensus         7 ~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~i   39 (47)
T PF07499_consen    7 LEALISLGYSKAEAQKAVSKLLEKPGMDVEELI   39 (47)
T ss_dssp             HHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHH
Confidence            458999999999999999999  7888888765

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PLN03196 MOC1-like protein; Provisional

Probab=80.18  E-value=4.7  Score=46.42  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhC-------CCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCC
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKG-------QDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQ  124 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~G-------e~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~  124 (697)
                      .+.+.+|.++||+++.|.++|..+-       +++..-.+++|..   ++-+..   + .....     ...|.+-..+ 
T Consensus       197 ~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~---lGv~~~---~-I~~il-----~~~P~iL~~s-  263 (487)
T PLN03196        197 STSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLES---LGLPRL---A-VARIL-----EKRPYILGFD-  263 (487)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHH---cCCCHH---H-HHHHH-----HhCCceeEcC-
Confidence            3568899999999999999998773       2355566666653   210000   0 00000     0001110000 


Q ss_pred             CCCCCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCC------CCchHHHHHHHHHhhhcccccccCCCCCCCCCCCC
Q 005421          125 PKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK------DAPVYELVDFITAAQISENFEKETDDAPHDNDGTN  198 (697)
Q Consensus       125 ~~e~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~------da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~  198 (697)
                      .       ... ...++..|+.+|++++.+...|.++-.      +..+...++|+..  ..+              ++.
T Consensus       264 l-------e~~-lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~--~lG--------------~s~  319 (487)
T PLN03196        264 L-------EET-VKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTS--KLK--------------IDP  319 (487)
T ss_pred             H-------HHh-HHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHH--hhC--------------CCH
Confidence            0       000 234677888999999999998888632      2223444444420  000              000


Q ss_pred             Ccc-----ccccccc----h-hhhHHHHHhcCCCHHHHHHHHHhhCC
Q 005421          199 EDK-----SDETLYG----T-MEITLQLLEMGFSENQVSLAIEKFGS  235 (697)
Q Consensus       199 Ee~-----ede~~~~----~-m~k~l~L~~MGFseeEas~AI~rcG~  235 (697)
                      ++.     .-...++    . ..|+.+|.+|||+++|+..+|.+|=.
T Consensus       320 e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~  366 (487)
T PLN03196        320 EDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQ  366 (487)
T ss_pred             HHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCc
Confidence            000     0000111    1 24556899999999999999988743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	697
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-10
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-05
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	2e-05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 85.7 bits (211), Expect = 3e-17
 Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 262/695 (37%)

Query: 147 MNFSVNEVDFA--------LDKLGKDAPVYELVDFITAAQISENFEKETDD---APHDND 195
           M+F   E  +          D    +    ++ D   +  +S   ++E D    +     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LS---KEEIDHIIMSKDAVS 62

Query: 196 GTN------EDKSDETLYGTMEITLQ-----LLE-MGFSENQVSLAIEKFGSKTPISELA 243
           GT         K +E +   +E  L+     L+  +   + Q S+    +       E  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR 116

Query: 244 DKIF-SGQIF--LDTPRSRSYDTVKV--------------------KT------------ 268
           D+++   Q+F   +  R + Y  ++                     KT            
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 269 --------------EYCSPDVV--------SQSRKMNTSETSRGKRPKEEYFDDFSNSTS 306
                            SP+ V         Q     TS +      K            
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELR 235

Query: 307 QFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSI--- 363
           +             +P +  L      L +    K            AFN + C+ +   
Sbjct: 236 RLLK---------SKPYENCLLV----LLNVQNAKA---------WNAFNLS-CKILLTT 272

Query: 364 -NKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 422
             K V         + +  +    + + H   +L P+    +  S L +   YL   P  
Sbjct: 273 RFKQVT--------DFLSAATTTHISLDHHSMTLTPD----EVKSLLLK---YLDCRPQD 317

Query: 423 NRFHIPPEP----PMTIQDAIPHTKKWWPS-WDTRKHLSCINSGTSGISQLCERFEKLLR 477
               +P E     P  +   I  + +   + WD  KH++            C++   ++ 
Sbjct: 318 ----LPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVN------------CDKLTTIIE 360

Query: 478 DSRGVLSSQQQRD------ILHRSEK-----LNLVWVGAYKLGPVDPEHIE-------LI 519
            S  VL   + R       +   S       L+L+W   + +   D   +        L+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLV 417

Query: 520 LGYPSNHT-----------------QAAGNSLTARLESLRHCFQTDT------------- 549
              P   T                  A   S+       +  F +D              
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSH 476

Query: 550 LGYHLSVLK-----SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604
           +G+HL  ++     ++F        VF       +    L  K+            R   
Sbjct: 477 IGHHLKNIEHPERMTLFR------MVF-------LDFRFLEQKI------------RHDS 511

Query: 605 KRWWESSGQTGELVQIEDIQALTTK---KFESLIHKLGSIDFVICQNSVPQIPNSK---- 657
             W  S      L Q++  +        K+E L++ +  +DF+        +  SK    
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFL--PKIEENLICSKYTDL 567

Query: 658 -QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 691
            +I+      + AE +       +++ E  + VQR
Sbjct: 568 LRIA------LMAEDE-------AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 5e-08
 Identities = 56/343 (16%), Positives = 106/343 (30%), Gaps = 87/343 (25%)

Query: 24  EILDFELPADRACASSMHVGENIASSSGSNLRSSFIGMGF----------SPSLVDKVIE 73
           ++ DF   A     S  H    +      +L   ++              +P     +I 
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIA 334

Query: 74  EKGQDNVDLL----------LETLIE--YNALQESNSQSS-DSLDTLFGDKDANSPPEIS 120
           E  +D +             L T+IE   N L+ +  +   D L ++F    A+ P  + 
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVF-PPSAHIPTILL 392

Query: 121 TMV---QPKEEPNVMDEGLHIEKRASLL-----MMNFSVNEVDFALDKLGKDAPVYEL-V 171
           +++     K +  V+   LH   + SL+         S+      L+   K    Y L  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIP--SIYLELKVKLENEYALHR 447

Query: 172 DFITAAQISENFEKETDDAPHDNDG----------TNEDKSDETLYGTMEITLQLLEMGF 221
             +    I + F+ + D  P   D            N +  +          +  L+  F
Sbjct: 448 SIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMT----LFRMVFLDFRF 502

Query: 222 SENQV---SLAIEKFGSKTPISELAD-KIFSGQIFLDTPR-----------SRSYDTVKV 266
            E ++   S A    GS      L   K +   I  + P+               +   +
Sbjct: 503 LEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 267 KTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQ 309
            ++Y   D++ +   M            E  F++   +  Q Q
Sbjct: 561 CSKYT--DLL-RIALMA---------EDEAIFEE---AHKQVQ 588

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query: 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 624
           + +LS+F GI    + L  LGI++   I+ E  E +  +           G+++ + D++
Sbjct: 17  IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----HQGKIMYVGDVR 71

Query: 625 ALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFS 680
           ++T K  +    + G  D VI    C +          +S     +       L +    
Sbjct: 72  SVTQKHIQ----EWGPFDLVIGGSPCND----------LSIVNPARK-----GLYEGTGR 112

Query: 681 LYYEFVRVVQRVR 693
           L++EF R++   R
Sbjct: 113 LFFEFYRLLHDAR 125

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 32/193 (16%)

Query: 369 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 428
           +P ++ + NVV + +     +S FL S  P  ++++  SA  R   +  NLP  NR    
Sbjct: 132 RPFFWLFENVVAMGVSDKRDISRFLES-NPVMIDAKEVSAAHRARYFWGNLPGMNRPL-- 188

Query: 429 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 488
                T+ D +   +        +                  +   +   S  +   + Q
Sbjct: 189 ---ASTVNDKLELQECLEHGRIAKF----------------SKVRTITTRSNSIKQGKDQ 229

Query: 489 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 548
              +  +EK +++W             +E + G+P ++T  +  S  AR   L   +   
Sbjct: 230 HFPVFMNEKEDILW----------CTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVP 279

Query: 549 TLGYHLSVLKSMF 561
            + +  + LK  F
Sbjct: 280 VIRHLFAPLKEYF 292

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 369 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH-- 426
            P ++ + + + ++ +     S FL   EP  +   +  +L        N+P     H  
Sbjct: 278 GPFFWMFVDNLVLNKEDLDVASRFLEM-EPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWA 336

Query: 427 IPPEPPMTIQDAIPHTKKWWPSWD 450
           +  E  +++      + K    W 
Sbjct: 337 LVSEEELSLLAQNKQSSKLAAKWP 360

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVI-----SIETSETNRRILKRWWESSGQTGELVQ 619
           L ++ +FSG+GG  +   R G  +K  +     +I T   N                L  
Sbjct: 3   LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------------RSLHV 50

Query: 620 IEDIQALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQ-ISNSKDPKMAAESDNL 674
            ED+  L  +  +        ID +I    CQ        S     N  D +      N 
Sbjct: 51  QEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ------GFSSIGKGNPDDSR------N- 97

Query: 675 PDFDFSLYYEFVRVVQRVR 693
                 LY  F R+V  ++
Sbjct: 98  -----QLYMHFYRLVSELQ 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	697
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	99.92
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.91
3me5_A	482	Cytosine-specific methyltransferase; structural ge	99.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.88
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.88
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	99.87
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	99.86
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	99.86
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	99.85
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	99.83
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.77
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.76
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	99.75
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	99.72
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.47
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.36
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.31
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	99.25
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	98.72
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.71
3me5_A	482	Cytosine-specific methyltransferase; structural ge	98.64
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.62
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	98.58
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	98.55
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	98.49
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.43
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	98.16
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	98.09
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.85
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.64
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	97.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.41
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.37
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.32
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.3
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	97.15
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.13
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.12
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	97.08
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.04
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.02
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	97.01
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.01
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.0
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	96.99
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.97
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	96.96
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.96
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.91
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.88
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.83
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	96.81
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.79
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.76
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.74
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.72
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.68
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.66
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.64
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.59
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.58
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.5
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.49
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.45
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.44
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	96.44
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.43
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.43
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.43
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.4
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.39
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	96.31
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.28
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.25
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.23
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.22
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.21
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.2
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.2
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.18
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	96.18
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.16
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.14
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.12
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.09
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	96.07
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	96.05
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.02
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	96.01
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	95.97
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.97
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.94
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.94
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.91
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.83
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.81
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	95.76
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.73
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.69
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	95.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	95.67
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.67
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	95.67
3ll7_A	410	Putative methyltransferase; methytransferase, stru	95.66
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.61
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	95.61
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.55
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	95.54
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.5
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.48
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.45
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	95.44
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	95.43
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	95.42
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.41
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.31
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.29
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.29
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.26
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.23
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	95.2
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.19
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.18
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.16
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.14
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.13
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.07
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	95.06
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.06
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	94.99
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	94.92
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	94.92
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.91
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	94.9
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	94.87
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	94.86
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	94.84
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	94.83
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.77
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	94.76
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	94.75
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	94.74
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	94.73
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	94.71
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	94.7
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	94.63
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	94.6
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	94.59
2qm3_A	373	Predicted methyltransferase; putative methyltransf	94.55
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	94.54
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.51
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	94.51
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	94.43
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	94.41
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	94.38
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	94.37
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	94.3
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	94.28
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	94.2
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.19
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.17
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	94.15
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	94.14
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	94.09
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.03
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	94.01
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	93.97
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	93.94
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	93.92
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	93.92
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	93.9
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	93.89
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	93.88
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.87
3f4k_A	257	Putative methyltransferase; structural genomics, P	93.87
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	93.79
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	93.72
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	93.7
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	93.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	93.65
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	93.55
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	93.51
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	93.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	93.44
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.44
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	93.4
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.39
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	93.36
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	93.29
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	93.23
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	93.23
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	93.22
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	93.21
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	93.19
1xxl_A	239	YCGJ protein; structural genomics, protein structu	93.19
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	93.19
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	93.18
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	93.09
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	93.09
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	93.01
4fp9_B	335	Mterf domain-containing protein 2; modification en	93.01
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	92.97
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	92.93
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	92.86
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	92.85
2p7i_A	250	Hypothetical protein; putative methyltransferase,	92.76
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	92.75
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	92.74
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	92.74
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	92.69
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	92.61
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	92.59
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	92.53
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	92.52
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	92.48
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	92.46
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	92.46
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	92.42
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	92.41
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	92.4
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	92.38
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	92.37
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	92.35
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	92.34
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	92.3
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	92.23
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	92.22
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	92.19
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	92.12
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	92.1
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	92.09
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	92.09
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	92.08
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	92.02
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	92.02
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	92.01
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.92
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	91.91
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	91.85
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	91.83
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	91.78
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	91.75
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	91.7
3lkd_A	542	Type I restriction-modification system methyltrans	91.66
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	91.62
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	91.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	91.47
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	91.41
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	91.37
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	91.37
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	91.36
2dna_A	67	Unnamed protein product; ubiquitin associated doma	91.25
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	91.14
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	91.09
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	91.08
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	90.94
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	90.94
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	90.76
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	90.75
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	90.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	90.63
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	90.62
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	90.6
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	90.59
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	90.54
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	90.42
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	90.41
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	90.36
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	90.26
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	90.22
3cc8_A	230	Putative methyltransferase; structural genomics, j	90.18
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	90.18
3khk_A	544	Type I restriction-modification system methylation	90.09
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	90.08
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	90.03
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	89.96
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	89.95
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.93
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	89.88
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	89.84
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	89.83
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	89.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	89.65
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	89.64
3ocj_A	305	Putative exported protein; structural genomics, PS	89.46
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	89.38
2b25_A	336	Hypothetical protein; structural genomics, methyl	89.21
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	89.16
2o07_A	304	Spermidine synthase; structural genomics, structur	89.09
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	89.06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	88.8
2i7c_A	283	Spermidine synthase; transferase, structural genom	88.58
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	88.32
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	87.95
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	87.93
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	87.93
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	87.8
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	87.61
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	87.54
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	87.47
2pt6_A	321	Spermidine synthase; transferase, structural genom	87.44
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	87.39
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	87.36
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	87.2
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	87.18
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	87.16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	87.12
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	86.95
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	86.76
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	86.25
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	86.2
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	86.09
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	86.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	86.0
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	85.91
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	85.57
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	85.55
3i9f_A	170	Putative type 11 methyltransferase; structural gen	85.55
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	85.35
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	85.31
2dna_A	67	Unnamed protein product; ubiquitin associated doma	85.26
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	85.13
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	85.07
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	84.84
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	84.69
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	84.52
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	84.37
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	84.17
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	83.88
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	83.76
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	83.11
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	83.0
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	82.62
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	82.5
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	82.34
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	81.85
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	81.8
2oo3_A	283	Protein involved in catabolism of external DNA; st	81.74
3ege_A	261	Putative methyltransferase from antibiotic biosyn	80.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	80.23

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=99.92  E-value=9.3e-26  Score=233.19  Aligned_cols=105  Identities=17%  Similarity=0.342  Sum_probs=92.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      |+||||||||||+++||++|||  ++++++|+|+.|++||+.+|.      ..++.+||++|+.+++       +++|||
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence            6899999999999999999998  569999999999999987542      2366799999998755       579999


Q ss_pred             EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      +||||||+||.+|+            ++|++|+|+.||++|+|+|+++||.+
T Consensus        66 ~ggpPCQ~fS~ag~------------~~g~~d~R~~L~~~~~r~i~~~~Pk~  105 (331)
T 3ubt_Y           66 IGGPPSQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF  105 (331)
T ss_dssp             ECCCCGGGTEETTE------------ECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred             EecCCCCCcCCCCC------------ccCCCCchhHHHHHHHHHHhccCCeE
Confidence            99999999998754            46889999999999999999999964

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.91  E-value=2.3e-24  Score=224.56  Aligned_cols=116  Identities=22%  Similarity=0.366  Sum_probs=101.1

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421          560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      ..+.++++|||||||||+++||+++||++++|+++|+|+.|+.+|+.+|     ++..++.+||++++.+.+..    .+
T Consensus        12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~----~~   82 (295)
T 2qrv_A           12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQE----WG   82 (295)
T ss_dssp             CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHH----TC
T ss_pred             ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcc----cC
Confidence            4567899999999999999999999998877999999999999998754     34456789999999887764    36


Q ss_pred             CccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421          640 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  695 (697)
Q Consensus       640 ~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~  695 (697)
                      ++|||+||||||+||.+|+           +|.|++|+|++||++|+|+|+++||.
T Consensus        83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence            8999999999999999863           23588999999999999999999986

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=99.88  E-value=2e-23  Score=230.56  Aligned_cols=125  Identities=17%  Similarity=0.261  Sum_probs=88.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhH---------HHh
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF---------ESL  634 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I---------~~l  634 (697)
                      ++++|||||||||+++||+++||  ++|++||+|+.|+.+|+.+|..  .++..++.+||++++...+         ..+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            68999999999999999999997  5799999999999999987632  2344566799998874321         111


Q ss_pred             hhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCC-CCccchHHHHHHHHHHhcccc
Q 005421          635 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       635 ~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~-D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      ....+++|||+||||||+||.+|+.++.    ..|++.|+. |+|++||++|+|+|+.+||.+
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~  222 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM  222 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred             hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence            2345789999999999999998764320    123445764 899999999999999999864

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.88  E-value=3e-23  Score=218.90  Aligned_cols=118  Identities=19%  Similarity=0.327  Sum_probs=97.9

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCceeeE-EEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHh
Q 005421          556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  634 (697)
Q Consensus       556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~V-vaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l  634 (697)
                      +|.++...++++|||||||||+++||+++||.++++ +++|+|+.|+.+|+.+|..     . ++.+||++++.+.|.. 
T Consensus         2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~-   74 (327)
T 3qv2_A            2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIES-   74 (327)
T ss_dssp             ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHH-
T ss_pred             CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhcc-
Confidence            466777788999999999999999999999877889 9999999999999987642     2 5679999999988764 


Q ss_pred             hhccCCccEEEecCCCCcc--ccCCCCCCCCCcccccccCCCCCCccchHHHHHH-HHHHh--cccc
Q 005421          635 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSMK  696 (697)
Q Consensus       635 ~~~~g~~DLVIGGpPCQ~F--S~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~R-IV~~v--K~~~  696 (697)
                          .++|||+||||||+|  |.+|+            ++|++|+|++||++|+| +|+++  ||.+
T Consensus        75 ----~~~Dil~ggpPCQ~fs~S~ag~------------~~~~~d~r~~L~~~~~r~~i~~~~~~P~~  125 (327)
T 3qv2_A           75 ----LNCNTWFMSPPCQPYNNSIMSK------------HKDINDPRAKSVLHLYRDILPYLINKPKH  125 (327)
T ss_dssp             ----TCCCEEEECCCCTTCSHHHHTT------------TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred             ----CCCCEEEecCCccCcccccCCC------------CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence                279999999999999  87644            46789999999999999 99998  7753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.88  E-value=4.5e-23  Score=217.90  Aligned_cols=110  Identities=14%  Similarity=0.231  Sum_probs=96.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      ++++|||||||||+++||+++|+.+++|+++|+|+.|+++|+.+|.     ...++.+||++++.+++..     ..+||
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~-----~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKK-----WNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhcc-----CCCCE
Confidence            5889999999999999999999988899999999999999988653     3345679999999888764     36999


Q ss_pred             EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhc-cc
Q 005421          644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SM  695 (697)
Q Consensus       644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK-~~  695 (697)
                      |+||||||+||.+|+            +.|++|+|++||++|+|+|+++| |.
T Consensus        73 l~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~~P~  113 (333)
T 4h0n_A           73 ILMSPPCQPFTRNGK------------YLDDNDPRTNSFLYLIGILDQLDNVD  113 (333)
T ss_dssp             EEECCCCCCSEETTE------------ECCTTCTTSCCHHHHHHHGGGCTTCC
T ss_pred             EEecCCCcchhhhhh------------ccCCcCcccccHHHHHHHHHHhcCCC
Confidence            999999999998754            45789999999999999999997 75

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=99.87  E-value=9.9e-23  Score=218.38  Aligned_cols=113  Identities=20%  Similarity=0.304  Sum_probs=92.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      ++++|||||||||+++||+++||  ++|++||+|+.|+++|+.+|     +...++.+||++++.+.+.......+.+||
T Consensus         2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            58999999999999999999998  56999999999999998754     344467899999998877543223468999


Q ss_pred             EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      |+||||||+||.+|+            + +.+|+|+.||++|+|+|+++||.+
T Consensus        75 i~ggpPCQ~fS~ag~------------~-~~~d~r~~L~~~~~~~v~~~~P~~  114 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGK------------G-NPDDSRNQLYMHFYRLVSELQPLF  114 (376)
T ss_dssp             EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCCCCcccccC------------C-CCCCchHHHHHHHHHHHHHhCCCE
Confidence            999999999999754            2 678999999999999999999964

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=99.86  E-value=9.7e-23  Score=234.59  Aligned_cols=122  Identities=17%  Similarity=0.176  Sum_probs=96.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH----
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----  633 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf----~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~----  633 (697)
                      ..++||||||||||||++||++||.    .+++++|||+|+.|+.||+.+     ++.+.+..+||.++....+..    
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N-----hp~~~~~~~di~~i~~~~~~~~~~~  284 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN-----HPQTEVRNEKADEFLALLKEWAVLC  284 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH-----CTTSEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH-----CCCCceecCcHHHhhhhhhhccccc
Confidence            4579999999999999999999982    246799999999999999874     445556678887664332211    


Q ss_pred             --------------------------------------------------------------------------------
Q 005421          634 --------------------------------------------------------------------------------  633 (697)
Q Consensus       634 --------------------------------------------------------------------------------  633 (697)
                                                                                                      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~  364 (784)
T 4ft4_B          285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF  364 (784)
T ss_dssp             HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence                                                                                            


Q ss_pred             --------hhhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          634 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       634 --------l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                              .....|++|||+||||||+||.+|+++        |...++.|+|++||++|+|+|+.+||..
T Consensus       365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~  427 (784)
T 4ft4_B          365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY  427 (784)
T ss_dssp             HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred             ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence                    111236899999999999999987743        3345688999999999999999999963

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=99.86  E-value=5.6e-22  Score=208.81  Aligned_cols=106  Identities=19%  Similarity=0.319  Sum_probs=92.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .++++|||||||||+++||+++|+  +++++||+|+.|+++|+.+|...      . .+||+++..+.+       ..+|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D   73 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence            468999999999999999999998  56999999999999999877432      1 689999987644       4699


Q ss_pred             EEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          643 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       643 LVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      ||+||||||+||.+|+            +.|++|+|+.||++|+|+|+++||.+
T Consensus        74 ~l~~gpPCQ~fS~ag~------------~~g~~d~r~~L~~~~~r~i~~~~P~~  115 (327)
T 2c7p_A           74 ILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             EEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             EEEECCCCCCcchhcc------------cCCCcchhhHHHHHHHHHHHhccCcE
Confidence            9999999999999764            35788999999999999999999853

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=99.85  E-value=6.4e-22  Score=208.97  Aligned_cols=110  Identities=16%  Similarity=0.327  Sum_probs=80.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +++|||||||+||+++||+++|+.+++|++||+|+.|+++|+.+|.     ...++.+||++++.+.+..     ..+||
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~-----~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCc-----CCcCE
Confidence            4789999999999999999999877889999999999999988653     2335679999998776643     26999


Q ss_pred             EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhc--cc
Q 005421          644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SM  695 (697)
Q Consensus       644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK--~~  695 (697)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|+++|  |.
T Consensus        72 l~~gpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~~~P~  113 (343)
T 1g55_A           72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEEcCCCcchhhcCC------------cCCccCccchHHHHHHHHHHHhcCCCC
Confidence            999999999998754            45788999999999999999998  74

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=99.83  E-value=2.9e-21  Score=209.25  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=89.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceee----EEEeeCCHHHHHHHHHHHhhcCCC---------------C-Ccc----
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-ELV----  618 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~----VvaVEid~~ar~t~~~~~~~~n~~---------------g-~li----  618 (697)
                      .+++||||||||||+++||+++|+++++    |++||+|+.|+.+|+.+|......               + +.+    
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~   88 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG   88 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence            3589999999999999999999976666    999999999999999988642100               0 000    


Q ss_pred             ---------------------ccccccccChhhHHHhhhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCC-
Q 005421          619 ---------------------QIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD-  676 (697)
Q Consensus       619 ---------------------~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D-  676 (697)
                                           ..+||++++..++.      +.+|||+||||||+||.+|+            +.|++| 
T Consensus        89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~------------~~g~~d~  150 (403)
T 4dkj_A           89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL------------QKGIDKE  150 (403)
T ss_dssp             HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC------------CCCCCGG
T ss_pred             cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC------------CCCCCcc
Confidence                                 24788888776553      45899999999999998764            357776 


Q ss_pred             --CccchHHHHHHHHHH
Q 005421          677 --FDFSLYYEFVRVVQR  691 (697)
Q Consensus       677 --~R~~Lf~Ey~RIV~~  691 (697)
                        +|+.||++|+|+|++
T Consensus       151 ~~~r~~L~~~~~rii~~  167 (403)
T 4dkj_A          151 LNTRSGLLWEIERILEE  167 (403)
T ss_dssp             GCCSGGGHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHH
Confidence              999999999999998

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.77  E-value=9.7e-20  Score=215.48  Aligned_cols=119  Identities=21%  Similarity=0.242  Sum_probs=92.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhh----HHHhh--
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK----FESLI--  635 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~----I~~l~--  635 (697)
                      ..++++|||||||||+++||++||| .++++|||+|+.|+.+|+.+|     ++..++.+||.+|....    +....  
T Consensus       538 ~~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          538 LPKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence            4679999999999999999999998 257999999999999998753     44556678887764221    11111  


Q ss_pred             --hccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          636 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       636 --~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                        ...+.+|||+||||||+||.+|+..          ..+.+|+|+.||++|+|+|+.+||.+
T Consensus       612 ~lp~~~~vDll~GGpPCQ~FS~ag~~~----------~~~~~d~R~~L~~~~~riv~~~rPk~  664 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF  664 (1002)
T ss_dssp             BCCCTTTCSEEEECCCCTTCCSSSCCC----------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred             hcccCCCeeEEEEcCCCcchhhhCCCC----------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence              1236899999999999999987531          12356789999999999999999864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.76  E-value=9.4e-20  Score=220.20  Aligned_cols=118  Identities=21%  Similarity=0.280  Sum_probs=91.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH----H----h
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L  634 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~----~----l  634 (697)
                      .++++|||||||||+++||++||| .+++++||+|+.|+.+|+.+|     +...++.+||.++....+.    .    .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            568999999999999999999998 367999999999999998754     3444566788766432110    0    0


Q ss_pred             hhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          635 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       635 ~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      +...+.+|||+||||||+||.+|+..          ..+.+|+|+.||++|+|+|+.+||.+
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~~----------~~~~~d~R~~L~~~~lriv~~~rPk~  975 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF  975 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCCC----------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred             ccccCccceEEecCCCcccccccccc----------cccccchhhHHHHHHHHHHHHhcCcE
Confidence            11235799999999999999987631          12356889999999999999999863

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.75  E-value=4.3e-19  Score=179.55  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=70.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .++++|||||||||   ||++|||++                +     .|+++..++.+||++|+.++|+.    ++++|
T Consensus        32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D   83 (230)
T 2qrv_B           32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD   83 (230)
T ss_dssp             CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred             CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence            46899999999998   899999963                1     24455556789999999988764    47899


Q ss_pred             EEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421          643 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  695 (697)
Q Consensus       643 LVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~  695 (697)
                      ||+||||||+||.+                   ++|++||++|+|||+++||.
T Consensus        84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk  117 (230)
T 2qrv_B           84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  117 (230)
T ss_dssp             EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence            99999999999975                   25899999999999999996

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=99.72  E-value=4.6e-18  Score=182.74  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=74.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ...++++|||||||||   ||++|||++                     +.|+++..++.+||++|+.++|+.    +++
T Consensus       186 ~~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~  237 (386)
T 2pv0_B          186 RRQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGP  237 (386)
T ss_dssp             GCCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCC
T ss_pred             hhcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCC
Confidence            3456999999999997   999999963                     135666666789999999988764    478


Q ss_pred             ccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421          641 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  695 (697)
Q Consensus       641 ~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~  695 (697)
                      +|||+||||||+||.+                   |+|++||++|+|||+++||.
T Consensus       238 ~DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk  273 (386)
T 2pv0_B          238 FDLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  273 (386)
T ss_dssp             CSEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence            9999999999999985                   36899999999999999995

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.47  E-value=7.4e-14  Score=145.59  Aligned_cols=161  Identities=20%  Similarity=0.320  Sum_probs=117.5

Q ss_pred             CCC-ccccccccccchhhHHHHhhhhccCCceeecccccchhhccccccccCCCCCCcCCCC-CCCCccccccCCCCCCC
Q 005421          369 QPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWW  446 (697)
Q Consensus       369 ~pp-fF~feNV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsaa~R~Rgy~hNLP~~~R~~~~p-~~p~ti~d~lp~~~~~w  446 (697)
                      .+| ||++|||..+-...+.+|.++|. ..+.++||+.|.||+|+|.||.++|...+....+ .+.+|++|+|...+.  
T Consensus       131 ~~P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~--  207 (295)
T 2qrv_A          131 DRPFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRI--  207 (295)
T ss_dssp             CCCCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCE--
T ss_pred             CCccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCcc--
Confidence            345 78999999998888888999996 5999999999999999999999999876522111 236899999976543  


Q ss_pred             CCcCcccccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhcccceeeecCcccCCCCcchhhHHhcCCCCC
Q 005421          447 PSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNH  526 (697)
Q Consensus       447 p~wd~r~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~  526 (697)
                         ....++++|++.+..+.           ..++              +.+-.  ...++.+.|++.|+.||+|||++|
T Consensus       208 ---~~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~  257 (295)
T 2qrv_A          208 ---AKFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHY  257 (295)
T ss_dssp             ---ESSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTT
T ss_pred             ---cccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHH
Confidence               22345556654321000           0000              00111  234678999999999999999999


Q ss_pred             cccCCCChHHHHHhhhhhhccccchhhhccccccCC
Q 005421          527 TQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFP  562 (697)
Q Consensus       527 Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp  562 (697)
                      +-..+++.++++|.+||++.++.+.++...|+.++.
T Consensus       258 ~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~  293 (295)
T 2qrv_A          258 TDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA  293 (295)
T ss_dssp             TCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred             eeCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence            998889999999999999999999999988887653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.36  E-value=8.9e-14  Score=147.04  Aligned_cols=177  Identities=13%  Similarity=0.130  Sum_probs=113.7

Q ss_pred             CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-chhhcccccc----ccCCCC--------CCcCCCCC
Q 005421          369 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE  430 (697)
Q Consensus       369 ~ppfF~feNV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~----hNLP~~--------~R~~~~p~  430 (697)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||..| .||+|+|.|+    ..++..        ..+|..+.
T Consensus       111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~  190 (333)
T 4h0n_A          111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG  190 (333)
T ss_dssp             TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred             CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence            399999999998864 3577777777    7789999999999 9999999997    222211        11122122


Q ss_pred             CCCccccccCCC-----------CCCCCCcCcccc--cce--eeccCc------ch------hHHHHHHHHHHhhhcCCC
Q 005421          431 PPMTIQDAIPHT-----------KKWWPSWDTRKH--LSC--INSGTS------GI------SQLCERFEKLLRDSRGVL  483 (697)
Q Consensus       431 ~p~ti~d~lp~~-----------~~~wp~wd~r~k--l~c--i~t~~~------~~------~~l~~ri~~~~~~~~~~~  483 (697)
                      .+.+|.|+|...           .+||..+|-.+.  .+|  .+..+.      ++      ....+++-+.+....+ .
T Consensus       191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-G  269 (333)
T 4h0n_A          191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-G  269 (333)
T ss_dssp             SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT-T
T ss_pred             ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC-C
Confidence            268899998521           145555553221  122  111110      00      0011122221111100 0


Q ss_pred             chhhhhHHHHhhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhcccc
Q 005421          484 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  558 (697)
Q Consensus       484 ~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK  558 (697)
                       .+.+           +.+..+.++++|+|.|++||+|||.+||-...++.++|||.+||+..|++++++.+.|.
T Consensus       270 -~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~  332 (333)
T 4h0n_A          270 -GEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF  332 (333)
T ss_dssp             -CHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             -cccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence             1111           12234678999999999999999999998778999999999999999999999887763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.31  E-value=4.7e-13  Score=141.26  Aligned_cols=178  Identities=15%  Similarity=0.156  Sum_probs=118.4

Q ss_pred             CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-chhhcccccc-ccCCCCCCcCCC--CCCCCcccccc
Q 005421          369 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI  439 (697)
Q Consensus       369 ~ppfF~feNV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~-hNLP~~~R~~~~--p~~p~ti~d~l  439 (697)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||..| .||+|+|.|+ +.... -.+|-.  +.+..+|+|+|
T Consensus       122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L  200 (327)
T 3qv2_A          122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL  200 (327)
T ss_dssp             CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred             CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence            799999999998865 4677787777    6789999999999 9999999994 44333 122221  11358899998


Q ss_pred             CC--------CCCCCCCcCcc--------cccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhcccceeee
Q 005421          440 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV  503 (697)
Q Consensus       440 p~--------~~~~wp~wd~r--------~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~  503 (697)
                      +.        ..+||..|...        ++-.|.|..+   ++.       ....++.+....    -......++++.
T Consensus       201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~----~~~~~~~~~~~~  266 (327)
T 3qv2_A          201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIE----PHFIPVKKAEDL  266 (327)
T ss_dssp             CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred             cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeeccc----ccccccCCceee
Confidence            62        22244333321        1112222211   000       001111110000    000112356677


Q ss_pred             cCcccCCCCcchhhHHhcCCCCCccc-CCCChHHHHHhhhhhhccccchhhhccccccC
Q 005421          504 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  561 (697)
Q Consensus       504 g~~~~~ple~~E~E~i~GfP~~~Tr~-~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~f  561 (697)
                      .+++++.|+|.|+.||+|||.+|+-. .+++.+++||.+||+..++++.++...|+++.
T Consensus       267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l  325 (327)
T 3qv2_A          267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL  325 (327)
T ss_dssp             TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred             cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence            88999999999999999999999977 67999999999999999999999988887653

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=99.25  E-value=2.4e-12  Score=118.52  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=81.6

Q ss_pred             CCCchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCC
Q 005421           48 SSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKE  127 (697)
Q Consensus        48 ssS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e  127 (697)
                      |.|...++.+|++||||+++|.||++..|. |+++++|+|++++.|++.+-.+.+          .+.+......+  +.
T Consensus         5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~----------~e~~l~~~~~~--~~   71 (118)
T 4ae4_A            5 SPSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLL----------VEEALEMHQCS--EE   71 (118)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHH----------HHHHHHHCSSC--HH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhh----------hHHHHHhccCC--cc
Confidence            345567999999999999999999999999 999999999999998755432111          00000000000  00


Q ss_pred             CCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          128 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       128 ~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      .   ..+  +.+.++.|+.|||+++.|.+|+.+++.+  ++.=+|+|++.
T Consensus        72 ~---~~~--~~~~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~  114 (118)
T 4ae4_A           72 K---MME--FLQLMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMAR  114 (118)
T ss_dssp             H---HHH--HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred             c---ccc--CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHh
Confidence            0   111  5578999999999999999999999988  58888998864

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=98.72  E-value=3.8e-09  Score=114.68  Aligned_cols=187  Identities=12%  Similarity=0.121  Sum_probs=111.3

Q ss_pred             CCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-chhhccccccc------cCCCCCCc---CCCC
Q 005421          368 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIPP  429 (697)
Q Consensus       368 ~~ppfF~feNV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~h------NLP~~~R~---~~~p  429 (697)
                      .+|.||++|||..+-..    .|..|.+.|    |.+...++||..| .||+|.|.|+=      .+|.....   .++.
T Consensus       176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~  255 (403)
T 4dkj_A          176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK  255 (403)
T ss_dssp             GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred             cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence            68999999999998653    566776666    6689999999999 99999999962      12221111   1112


Q ss_pred             CCCCccccccCCC--CCC-------CCCc-Ccccccceeec-cCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhccc
Q 005421          430 EPPMTIQDAIPHT--KKW-------WPSW-DTRKHLSCINS-GTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKL  498 (697)
Q Consensus       430 ~~p~ti~d~lp~~--~~~-------wp~w-d~r~kl~ci~t-~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~  498 (697)
                      .++.+|.|+|...  .++       .|.. .++.++.+..+ ......+  +  +++....+-.++...      .+...
T Consensus       256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~~~~~~~Tlt~------~~~~~  325 (403)
T 4dkj_A          256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYNINGIGPTLTA------SGANS  325 (403)
T ss_dssp             CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEETTSBBCCCCS------SSGGG
T ss_pred             cccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceecCCCcccceec------CCCCc
Confidence            2367999999733  111       1110 11112211111 0000000  0  000000000000000      01111


Q ss_pred             ceeeecCcccCCCCcchhhHHhcCCC-CCcccC--C-CChHHHHHhhhhhhccccchhhhccccccCCCC
Q 005421          499 NLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPGG  564 (697)
Q Consensus       499 nlvW~g~~~~~ple~~E~E~i~GfP~-~~Tr~~--~-ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~  564 (697)
                      -++.....+++.|+|.|+.|++|||. +|....  + ++.+++||.+||+..++++..++..|+..+...
T Consensus       326 ~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~~  395 (403)
T 4dkj_A          326 RIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEE  395 (403)
T ss_dssp             SCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC-
T ss_pred             eeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhcc
Confidence            22223457899999999999999999 677653  3 799999999999999999999998888776543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.71  E-value=1.1e-09  Score=112.97  Aligned_cols=192  Identities=17%  Similarity=0.179  Sum_probs=100.4

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhcccccc----ccCCCCCCcCCCCCCCC
Q 005421          367 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM  433 (697)
Q Consensus       367 ~~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~----hNLP~~~R~~~~p~~p~  433 (697)
                      ..+|.||++|||..+-.    ..+..|-+.|    |.+.+.++||.+| .||+|+|.||    ..++..--+|.--....
T Consensus       100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~  179 (331)
T 3ubt_Y          100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (331)
T ss_dssp             HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred             ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence            45799999999987743    4566666666    6799999999999 9999999997    33333322222112256


Q ss_pred             ccccccCCCC-CCCCCcCcccc--cceeecc----Cc--chhHHH-HHHHHH------HhhhcCCCc-hhhhhHHHHhhc
Q 005421          434 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG----TS--GISQLC-ERFEKL------LRDSRGVLS-SQQQRDILHRSE  496 (697)
Q Consensus       434 ti~d~lp~~~-~~wp~wd~r~k--l~ci~t~----~~--~~~~l~-~ri~~~------~~~~~~~~~-~~~q~~vl~~c~  496 (697)
                      |+.|++.... .-+|.+++...  ..++...    ..  ...... .+++..      +...+.... ....+.+...++
T Consensus       180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 3ubt_Y          180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK  259 (331)
T ss_dssp             CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred             cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence            7777652110 01111111000  0000000    00  000000 000000      000000000 000000001111


Q ss_pred             ccceee-ecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccc
Q 005421          497 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  559 (697)
Q Consensus       497 ~~nlvW-~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~  559 (697)
                      ..+-.+ ..++..+.|++.|+.||+|||++|+= ...+.++++|.+||+.-+....++...++.
T Consensus       260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f-~~~s~~~~ykqiGNAVpp~la~~I~~~I~~  322 (331)
T 3ubt_Y          260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (331)
T ss_dssp             TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEe-CCCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence            111111 13455799999999999999999973 145889999999999988776666555543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=98.64  E-value=2e-08  Score=111.27  Aligned_cols=180  Identities=14%  Similarity=0.229  Sum_probs=105.0

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCC---------ceeecccccchhhcccccc----ccCCCCCCc
Q 005421          367 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF  425 (697)
Q Consensus       367 ~~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~---------Pe~Vds~~fsaa~R~Rgy~----hNLP~~~R~  425 (697)
                      ..+|.||++|||..+-.    ..|..|.+-|    |.+.         +.++||++|.||+|+|.|+    .+++....|
T Consensus       217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F  296 (482)
T 3me5_A          217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF  296 (482)
T ss_dssp             HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred             HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence            45899999999999854    3566776666    4453         7899999999999999997    344433333


Q ss_pred             C------CCCCCCCccccccCCCCCCCCCcCcccccceeeccCcchhHHHHHHHHHH----hhhcCC-----CchhhhhH
Q 005421          426 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV-----LSSQQQRD  490 (697)
Q Consensus       426 ~------~~p~~p~ti~d~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~ri~~~~----~~~~~~-----~~~~~q~~  490 (697)
                      .      ..|.++.||.|+|....      +  .|.  ..+     .++-+.+.+.-    ++.+++     .+......
T Consensus       297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~~~  361 (482)
T 3me5_A          297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSV  361 (482)
T ss_dssp             CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGGGG
T ss_pred             CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccccc
Confidence            2      24555678999885221      0  000  000     11111111110    010110     00000000


Q ss_pred             ---HH---Hhhccccee---e-------------ecCcccCCCCcchhhHHhcCCCCCcc--cCCCChHHHHHhhhhhhc
Q 005421          491 ---IL---HRSEKLNLV---W-------------VGAYKLGPVDPEHIELILGYPSNHTQ--AAGNSLTARLESLRHCFQ  546 (697)
Q Consensus       491 ---vl---~~c~~~nlv---W-------------~g~~~~~ple~~E~E~i~GfP~~~Tr--~~~ls~teR~k~Lgnsfq  546 (697)
                         +.   ..+...-++   |             ....+++.|+|.|+.||+|||...++  .+.++.+.+||.+||+..
T Consensus       362 ~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GNsV~  441 (482)
T 3me5_A          362 TRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVV  441 (482)
T ss_dssp             TCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHTSCC
T ss_pred             ceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCCccC
Confidence               00   000000011   1             01356899999999999999953322  347899999999999999


Q ss_pred             cccchhhhccccccC
Q 005421          547 TDTLGYHLSVLKSMF  561 (697)
Q Consensus       547 vdti~~hLsvLK~~f  561 (697)
                      ++++..+...|+.++
T Consensus       442 v~v~~~i~~~l~~~l  456 (482)
T 3me5_A          442 VPVFAAVAKLLEPKI  456 (482)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999998887776543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.62  E-value=2e-08  Score=105.80  Aligned_cols=180  Identities=13%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhccccccccCC-CCCC-cCCCCCC---CC
Q 005421          368 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPEP---PM  433 (697)
Q Consensus       368 ~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~hNLP-~~~R-~~~~p~~---p~  433 (697)
                      .+|.||++|||..+-.    ..|..|.+.|    |.++..++||..| .||+|+|.|+=-.- ..+. ....|.|   ..
T Consensus       111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~  190 (327)
T 2c7p_A          111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT  190 (327)
T ss_dssp             HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred             ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence            5799999999998864    3567776666    6788999999999 99999999984321 1110 0122333   57


Q ss_pred             ccccccCCC--CCCCC-C-----cCcccccceeeccCcchhHHHHHHHHHH--hhhc-CCCchhhhhHHHHh----hc-c
Q 005421          434 TIQDAIPHT--KKWWP-S-----WDTRKHLSCINSGTSGISQLCERFEKLL--RDSR-GVLSSQQQRDILHR----SE-K  497 (697)
Q Consensus       434 ti~d~lp~~--~~~wp-~-----wd~r~kl~ci~t~~~~~~~l~~ri~~~~--~~~~-~~~~~~~q~~vl~~----c~-~  497 (697)
                      |+.|++...  ..+|. +     |.-..+.......  ....+..  .+..  .+.. +.+...    |...    +. .
T Consensus       191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~T----i~~~~~~~~~~~  262 (327)
T 2c7p_A          191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKT--VRLGIVG--KGGQGERIYSTRGIAIT----LSAYGGGIFAKT  262 (327)
T ss_dssp             CGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSC--CEEEEST--TCCTTCEEEETTSCBCC----CCSSCCSTTTTT
T ss_pred             cHHHHhcccCCcccccccCCcceeEeeccccCccch--hhhhhcc--CCccccccccCCCCcCc----eecCCCCccCCC
Confidence            899998421  11111 0     0000000000000  0000000  0000  0000 001000    0000    11 1


Q ss_pred             cceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccc
Q 005421          498 LNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  559 (697)
Q Consensus       498 ~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~  559 (697)
                      .+.+.  +.+.+.|++.|..||+|||++|+-  ..+.++++|.+||+.-+....++...|+.
T Consensus       263 ~~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~  320 (327)
T 2c7p_A          263 GGYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             CEEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            12232  677899999999999999999984  57999999999999988887776665544

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=98.58  E-value=3.5e-07  Score=84.31  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=72.6

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCC-CCCCC-C
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQP-KEEPN-V  131 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~-~e~~~-~  131 (697)
                      .+.++++||||++.+.||+...|..+.+.-++.|+..+.-..-.    +..    .      .+...+...+ .+... .
T Consensus         6 ~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~----epl----~------~~~~~s~~~~~~~~l~~~   71 (126)
T 2lbc_A            6 SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFA----EPL----T------MPGYGGAASAGASVFGAS   71 (126)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSS----CTT----C------CSSCCSSSSSCCCCSTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccc----ccc----c------ccccccccccchhhhccc
Confidence            57899999999999999999999999999999999986521000    000    0      0000000000 00000 0


Q ss_pred             --CchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          132 --MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       132 --~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                        ... ...+.+..|+.|||+++.+.+|+..+|.+  ++.=++||+..
T Consensus        72 ~~~~~-~~e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~  116 (126)
T 2lbc_A           72 GLDNQ-PPEEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH  116 (126)
T ss_dssp             SCCCC-CCHHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             ccccC-cCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence              000 14568999999999999999999999764  68888999865

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.55  E-value=1.2e-08  Score=103.59  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=47.7

Q ss_pred             ccccCCCC-ccccccccccchhhHHHHhhhhccCCceeecccccchhhccccccccCCCCCC
Q 005421          364 NKVVAQPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR  424 (697)
Q Consensus       364 ~~~~~~pp-fF~feNV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsaa~R~Rgy~hNLP~~~R  424 (697)
                      |+...++| ||++|||..|-......|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus       116 Pk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~  176 (230)
T 2qrv_B          116 PKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS  176 (230)
T ss_dssp             CCSSCCSCCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred             cCcccCCCcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence            44344445 56899999998888899999995 89999999999999999999999998865

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=98.49  E-value=2.6e-07  Score=85.07  Aligned_cols=102  Identities=12%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCC----CCCCccccccccchhhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDND----GTNEDKSDETLYGTMEI  212 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~----~~~Ee~ede~~~~~m~k  212 (697)
                      ..+.+.+|+.||||++.|.+|+.++|. + ++..++||++++.....+-  ||.. .+.    +.+.  +. .-....++
T Consensus         8 e~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~--d~~~-~e~~l~~~~~~--~~-~~~~~~~~   79 (118)
T 4ae4_A            8 ERQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGF--DPLL-VEEALEMHQCS--EE-KMMEFLQL   79 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTC--CHHH-HHHHHHHCSSC--HH-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCC--Chhh-hHHHHHhccCC--cc-ccccCHHH
Confidence            457899999999999999999999998 3 7999999999975433210  0000 000    0000  00 00002255


Q ss_pred             HHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 005421          213 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  248 (697)
Q Consensus       213 ~l~L~~MGFseeEas~AI~rcG~da~i~eLvD~I~A  248 (697)
                      +..|..|||++++|.-|+-+++-|  ++-=+|.+++
T Consensus        80 v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~  113 (118)
T 4ae4_A           80 MSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMA  113 (118)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence            679999999999999999999987  3333444443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.43  E-value=1.6e-07  Score=99.31  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=47.0

Q ss_pred             cCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421          504 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  557 (697)
Q Consensus       504 g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL  557 (697)
                      .+.+.+.|++.|+.||+|||++|+=...++.++++|.+||+.-++.+..++..|
T Consensus       288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l  341 (343)
T 1g55_A          288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence            466789999999999999999999655689999999999999998888766543

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=98.16  E-value=1.1e-05  Score=74.42  Aligned_cols=103  Identities=19%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCC--CCCCCCccccc-------cccch
Q 005421          139 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHD--NDGTNEDKSDE-------TLYGT  209 (697)
Q Consensus       139 ~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~--d~~~~Ee~ede-------~~~~~  209 (697)
                      +.+..|+.||||+..+.+|+..||..+ ++.-+++|+..+.-..-    ++....  ...... ...+       ++-..
T Consensus         5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di----~epl~~~~~~s~~~-~~~~~l~~~~~~~~~~   78 (126)
T 2lbc_A            5 SSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDF----AEPLTMPGYGGAAS-AGASVFGASGLDNQPP   78 (126)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSS----SCTTCCSSCCSSSS-SCCCCSTTSSCCCCCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccc----cccccccccccccc-cchhhhcccccccCcC
Confidence            578999999999999999999998854 79999999987642111    111000  000000 0000       11123


Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 005421          210 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  249 (697)
Q Consensus       210 m~k~l~L~~MGFseeEas~AI~rcG~da~i~eLvD~I~Aa  249 (697)
                      .+++..|+.|||++++|..|+..+|-+  ++.=++.++..
T Consensus        79 e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~  116 (126)
T 2lbc_A           79 EEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH  116 (126)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            356679999999999999999999874  66667777654

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=98.09  E-value=2.3e-06  Score=98.90  Aligned_cols=55  Identities=9%  Similarity=0.057  Sum_probs=43.6

Q ss_pred             cccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchh
Q 005421          496 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGY  552 (697)
Q Consensus       496 ~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~  552 (697)
                      ...+..|+-+.+.+.|+|.|+.||+|||++|+=  .-+.++++|.+||+.-+.....
T Consensus       678 ~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f--~Gs~~~~ykQIGNAVpp~lA~a  732 (784)
T 4ft4_B          678 EPHNQVIIHPTQARVLTIRENARLQGFPDYYRL--FGPIKEKYIQVGNAVAVPVARA  732 (784)
T ss_dssp             CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCC--CSCHHHHHHHHHHSCCHHHHHH
T ss_pred             cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEe--CCCHHHHHhhccCCCCHHHHHH
Confidence            334455666778899999999999999999974  5589999999999986644333

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.85  E-value=4.9e-06  Score=89.32  Aligned_cols=52  Identities=13%  Similarity=0.172  Sum_probs=40.1

Q ss_pred             CcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhcccc
Q 005421          505 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  558 (697)
Q Consensus       505 ~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK  558 (697)
                      +.+-++|++-|.-||+|||++|.=  ..+.++.+|.+||+.-+.....+-..++
T Consensus       313 P~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~la~aia~~I~  364 (376)
T 3g7u_A          313 PYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLY  364 (376)
T ss_dssp             SSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             CccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHHHHHHHHHHH
Confidence            456799999999999999999974  5678899999999986644443333333

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.64  E-value=0.00012  Score=78.02  Aligned_cols=87  Identities=18%  Similarity=0.147  Sum_probs=62.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~-g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-+|||||||+|++++.+.+.|.  ..|++||+++.+....+.+....+. . ...++.+|+.++..    .+....+.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~  293 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK  293 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence            467899999999999999999885  4589999999999888887654322 1 22345567654421    11112357


Q ss_pred             ccEEEecCCCCcccc
Q 005421          641 IDFVICQNSVPQIPN  655 (697)
Q Consensus       641 ~DLVIGGpPCQ~FS~  655 (697)
                      +|+|+..||+...+.
T Consensus       294 fD~Ii~dpP~~~~~~  308 (396)
T 3c0k_A          294 FDVIVMDPPKFVENK  308 (396)
T ss_dssp             EEEEEECCSSTTTCS
T ss_pred             CCEEEECCCCCCCCh
Confidence            999999999876553

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=97.62  E-value=2.8e-05  Score=84.10  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             CC-ccccccccccchhhHHHHhhhhccCCceeecccccchhhccccccccCCCCCCc
Q 005421          370 PP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF  425 (697)
Q Consensus       370 pp-fF~feNV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsaa~R~Rgy~hNLP~~~R~  425 (697)
                      +| ||++|||..|......+|.+||. +.+.+|||++|.+++|+|-||+|+|+++|.
T Consensus       278 ~P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~  333 (386)
T 2pv0_B          278 GPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR  333 (386)
T ss_dssp             SCCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred             CCcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence            44 67899999998888889999995 899999999997666666699999999874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.57  E-value=0.00017  Score=75.80  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=61.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||||||.|++++.+.+.|.   .|++||+++.+....+.+....+...  ..++.+|+.++...    +....+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~  225 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST  225 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence            356899999999999999999986   37899999999988887765433221  23456676654221    1112357


Q ss_pred             ccEEEecCCCCccc
Q 005421          641 IDFVICQNSVPQIP  654 (697)
Q Consensus       641 ~DLVIGGpPCQ~FS  654 (697)
                      ||+|+..|||.+.+
T Consensus       226 fD~Ii~dPP~~~~~  239 (332)
T 2igt_A          226 YDIILTDPPKFGRG  239 (332)
T ss_dssp             BSEEEECCCSEEEC
T ss_pred             ceEEEECCccccCC
Confidence            99999999997665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.41  E-value=0.00037  Score=66.08  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||++||.|++++.+.+.|.  ..|+++|+++.+....+.+....+. ...++.+|+.++.           +.+|
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D  114 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  114 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence            356899999999999999999885  3588999999998888776543321 2234567776652           3699


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+..||+...+
T Consensus       115 ~v~~~~p~~~~~  126 (207)
T 1wy7_A          115 IVIMNPPFGSQR  126 (207)
T ss_dssp             EEEECCCCSSSS
T ss_pred             EEEEcCCCcccc
Confidence            999999976544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.37  E-value=0.00028  Score=68.62  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||++||.|++++.|.+.|.   .|+++|+++.+....+......+. ....++.+|+.++.         ..+.|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~  145 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SFLKA  145 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GGCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------ccCCC
Confidence            467899999999999999999984   478999999998888776544321 11224556766543         12589


Q ss_pred             cEEEecCCCCcccc
Q 005421          642 DFVICQNSVPQIPN  655 (697)
Q Consensus       642 DLVIGGpPCQ~FS~  655 (697)
                      |+|+..+||..+..
T Consensus       146 D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          146 DVVFLSPPWGGPDY  159 (241)
T ss_dssp             SEEEECCCCSSGGG
T ss_pred             CEEEECCCcCCcch
Confidence            99999999998764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.32  E-value=0.00032  Score=71.24  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+-+|||+|||.|++++.+.+.|..  .|+++|+++.+....+.+....+... ..++.+|+.++..         .+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~  192 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI  192 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence            44678999999999999999999864  48999999999888887655332222 2255678876653         257


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      ||+|+..+|+..
T Consensus       193 fD~Vi~~~p~~~  204 (278)
T 2frn_A          193 ADRILMGYVVRT  204 (278)
T ss_dssp             EEEEEECCCSSG
T ss_pred             ccEEEECCchhH
Confidence            999999999654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.30  E-value=0.00027  Score=73.16  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=60.0

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421          560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+..+-+|||+|||+|++++.+-+.|-  ..|+++|+|+.+.+.++.+-..++-.. ..++.+|..++..         .
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~  190 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E  190 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence            345678899999999999998888784  247899999999998887654322222 1245577766542         2


Q ss_pred             CCccEEEecCCCCc
Q 005421          639 GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 g~~DLVIGGpPCQ~  652 (697)
                      +.+|.|+-++|+-.
T Consensus       191 ~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          191 NIADRILMGYVVRT  204 (278)
T ss_dssp             SCEEEEEECCCSSG
T ss_pred             cCCCEEEECCCCcH
Confidence            57999999999764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=97.15  E-value=0.00022  Score=85.29  Aligned_cols=45  Identities=7%  Similarity=0.016  Sum_probs=36.7

Q ss_pred             ccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhh
Q 005421          507 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH  553 (697)
Q Consensus       507 ~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~h  553 (697)
                      +.+.|++.|..||+|||++|.=  .-+.+++++.+||+.-+.....+
T Consensus       946 ~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~~~~i  990 (1002)
T 3swr_A          946 QHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPLAKAI  990 (1002)
T ss_dssp             SSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHHHHHH
T ss_pred             cccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHHHHHH
Confidence            5588999999999999999974  55888999999999866444433

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.13  E-value=0.0011  Score=69.44  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ..+-+|||||||.|++++. .+ |.  ..|+++|+++.+....+.+....+.. ...++.+|+.++.           +.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~  258 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK  258 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence            4567899999999999888 55 42  45899999999998888776543221 2234566776543           47


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      +|+|+..||...
T Consensus       259 fD~Vi~dpP~~~  270 (336)
T 2yx1_A          259 GNRVIMNLPKFA  270 (336)
T ss_dssp             EEEEEECCTTTG
T ss_pred             CcEEEECCcHhH
Confidence            999999988654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.12  E-value=0.00049  Score=64.71  Aligned_cols=81  Identities=19%  Similarity=0.354  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||||+||.|++++.+...|.  ..|+++|+++.+....+.+....+.....++.+|+.++...    +  ..+.+|
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD  115 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD  115 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence            457899999999999997777775  35899999999998888776544322223456676544211    0  136899


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+..+|..
T Consensus       116 ~i~~~~p~~  124 (189)
T 3p9n_A          116 LVLADPPYN  124 (189)
T ss_dssp             EEEECCCTT
T ss_pred             EEEECCCCC
Confidence            999988854

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.08  E-value=0.00048  Score=55.31  Aligned_cols=42  Identities=10%  Similarity=0.355  Sum_probs=38.3

Q ss_pred             chhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           51 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        51 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      .++-+..++.|||++++|.+|++..|....+.-+|.|+..+-
T Consensus         9 n~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~   50 (54)
T 2cos_A            9 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG   50 (54)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence            466788999999999999999999999999999999998653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.04  E-value=0.00095  Score=60.57  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=57.9

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ++.+-+|||+.||.|.+...+.+.|..   |+++|+++.+.+..+.+....+. ...++.+|+.+..    .......+.
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~  110 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER  110 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence            335678999999999999999999864   89999999998888776554322 2234556665421    111111247


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      +|+|+..+|..
T Consensus       111 ~D~i~~~~~~~  121 (171)
T 1ws6_A          111 FTVAFMAPPYA  121 (171)
T ss_dssp             EEEEEECCCTT
T ss_pred             eEEEEECCCCc
Confidence            99999988854

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.02  E-value=0.00088  Score=64.40  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=54.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.+||||+||.|.+++.+...|..  .|++||+++.+.+..+.+....+.....++.+|+.++..       ...+.||+
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~  125 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI  125 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence            568999999999999987777863  589999999999888877654332122244566544211       11257999


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+..+|
T Consensus       126 V~~~~p  131 (202)
T 2fpo_A          126 VFVDPP  131 (202)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999888

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.01  E-value=0.00097  Score=55.04  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=36.1

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ..+.+|+.|||+++.+.||+...|..|++.-+|+||...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~   49 (64)
T 1whc_A           11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence            378999999999999999999999889999999999864

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.01  E-value=0.0008  Score=72.55  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||||||.|++++.+.+.|.  + |++||+++.+....+.+....+... .+..+|+.++-    .   ...+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence            467899999999999999999886  3 8999999999888887654432221 23345554321    1   1124599


Q ss_pred             EEEecCCC
Q 005421          643 FVICQNSV  650 (697)
Q Consensus       643 LVIGGpPC  650 (697)
                      +|+--|||
T Consensus       283 ~Ii~dpP~  290 (393)
T 4dmg_A          283 HVLLDPPT  290 (393)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999999

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.00  E-value=0.0012  Score=66.85  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ...+-+|||||||.|++++.+.+.+-. ..|+++|+++.+....+.+....+.....++.+|+.++ ..        .+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~  186 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV  186 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence            345678999999999999998876421 25789999999998888766543222333567888766 32        247


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      +|+|+-.+|.
T Consensus       187 ~D~Vi~d~p~  196 (272)
T 3a27_A          187 ADRVIMGYVH  196 (272)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEECCcc
Confidence            9999999986

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=96.99  E-value=0.00086  Score=64.40  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=54.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC--CCCccccccccccChhhHHHhhhccCC-
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS-  640 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~--~g~li~~~DI~~Lt~~~I~~l~~~~g~-  640 (697)
                      +.+||||+||.|++++.+-..|.  ..|+++|+++.+....+.+....+.  ....++.+|+.++...    +  ..+. 
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~~  125 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQPH  125 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSCC
T ss_pred             CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCCC
Confidence            56899999999999998777775  3589999999998888876654322  1222445565443210    0  1256 


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      ||+|+..+|.
T Consensus       126 fD~I~~~~~~  135 (201)
T 2ift_A          126 FDVVFLDPPF  135 (201)
T ss_dssp             EEEEEECCCS
T ss_pred             CCEEEECCCC
Confidence            9999998883

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.97  E-value=0.00088  Score=67.71  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||++||.||.+..+..+  |-  ..|+++|+++...+.++.+....+.....++.+|+.++...    +....+.
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~  156 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF  156 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence            4678999999999999887763  31  24789999999888888765543322223445666544211    1011357


Q ss_pred             ccEEEecCCCCccccC
Q 005421          641 IDFVICQNSVPQIPNS  656 (697)
Q Consensus       641 ~DLVIGGpPCQ~FS~a  656 (697)
                      ||+|+..+||.++...
T Consensus       157 fD~Vl~d~Pcs~~g~~  172 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIK  172 (274)
T ss_dssp             EEEEEEEECCC-----
T ss_pred             CCEEEEcCCCCCCccc
Confidence            9999999999987653

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.96  E-value=0.00092  Score=55.29  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=36.6

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      -..+.+++.||||++.+.||+...|..+.+.=+|+|+..+
T Consensus        10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~   49 (64)
T 2crn_A           10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC   49 (64)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            3478999999999999999999999999999999999854

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.96  E-value=0.0008  Score=55.47  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=36.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+.+..|+.|||+++.+.+|++++|.+  ++..+|+|++..
T Consensus        19 e~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~   58 (63)
T 1wgn_A           19 ERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            5577999999999999999999999997  799999999874

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.91  E-value=0.0013  Score=70.31  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-+|||||||.|++++.+.+.|.  +.|++||+++.+....+.+....+..  ...++.+|+.+.    +..+...-..
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~  285 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  285 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence            456899999999999999988885  35899999999998888776543322  223456676543    1222112247


Q ss_pred             ccEEEecCCCCcc
Q 005421          641 IDFVICQNSVPQI  653 (697)
Q Consensus       641 ~DLVIGGpPCQ~F  653 (697)
                      ||+|+--||+-+.
T Consensus       286 fD~Ii~DPP~~~~  298 (385)
T 2b78_A          286 YDIIIIDPPSFAR  298 (385)
T ss_dssp             EEEEEECCCCC--
T ss_pred             ccEEEECCCCCCC
Confidence            9999999998543

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.88  E-value=0.00098  Score=54.65  Aligned_cols=47  Identities=13%  Similarity=0.207  Sum_probs=38.4

Q ss_pred             CcCCCCchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           45 NIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        45 ~~assS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      |.++......+.+++.|||+++.+.+|++..+. |.+.-+|+|+....
T Consensus         3 ~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~   49 (63)
T 2dak_A            3 SGSSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHID   49 (63)
T ss_dssp             CCSCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            333333445789999999999999999999986 79999999998643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.83  E-value=0.0018  Score=68.88  Aligned_cols=84  Identities=20%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||||||.|++++.+.+.|.  ..|++||+++.+....+.+....+.. ...++.+|+.++..    .+....+.+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f  290 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF  290 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence            467899999999999999998875  35899999999998888776543211 12244566654321    121123579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+|+.-||+-.
T Consensus       291 D~Vi~dpP~~~  301 (396)
T 2as0_A          291 DIVVLDPPAFV  301 (396)
T ss_dssp             EEEEECCCCSC
T ss_pred             CEEEECCCCCC
Confidence            99999999754

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=96.81  E-value=0.0023  Score=69.01  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      .|..+++|||+++.|.|||...+- |.+.=+|+|++-
T Consensus       171 ~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~g  206 (368)
T 1oqy_A          171 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG  206 (368)
T ss_dssp             HHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence            689999999999999999999997 999999999753

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.79  E-value=0.00091  Score=51.68  Aligned_cols=36  Identities=14%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      ...+.++++|||+++.+.+|+...|  |.+.-+|+|+.
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~   45 (47)
T 2ekk_A           10 QQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLT   45 (47)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHc
Confidence            3468999999999999999999997  89999999986

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.76  E-value=0.0022  Score=60.58  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||++||.|++.+.+.+.|.  ..|+++|+++.+....+.+..     ...++.+|+.++.           +.+|
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence            457899999999999999998875  348999999999887776432     2235567877653           4799


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+..+|-..+.
T Consensus       113 ~v~~~~p~~~~~  124 (200)
T 1ne2_A          113 TWIMNPPFGSVV  124 (200)
T ss_dssp             EEEECCCC----
T ss_pred             EEEECCCchhcc
Confidence            999988865543

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.74  E-value=0.0017  Score=50.78  Aligned_cols=39  Identities=13%  Similarity=0.135  Sum_probs=34.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      ..++++.|+.|||+++.|.+|+..+|-+  ++.-++||++.
T Consensus         8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g   46 (49)
T 1ify_A            8 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            5678999999999999999999999975  58888999863

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.72  E-value=0.0036  Score=66.40  Aligned_cols=85  Identities=20%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+|||.|++++.+.+.+   ..|+++|+++.+....+.+....+.....++.+|+.++..    .+....+.+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence            46789999999999999988763   4589999999998888876543322223345566654421    1211235799


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+.-||+-..+
T Consensus       282 ~Ii~dpP~~~~~  293 (382)
T 1wxx_A          282 LVVLDPPAFAKG  293 (382)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEECCCCCCCC
Confidence            999999974433

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.68  E-value=0.0016  Score=55.41  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=35.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .++++..|+.|||++++|..|+.+|+-+  ++.-++||+..+
T Consensus        29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~   68 (73)
T 1vg5_A           29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS   68 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence            5578999999999999999999999975  788899999765

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.66  E-value=0.0025  Score=48.21  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      .+.+..|+.|||+++.+.+|+..|+-+  ++.=++||+.
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHHc
Confidence            467999999999999999999999764  6777888874

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.64  E-value=0.0041  Score=61.73  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||.||.|++.+.+.+.+-.  .|+++|+++.+....+.+....+... ..++.+|+.++... +     ..+.|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f  120 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA  120 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence            4678999999999999999888742  58899999999888877665433222 23556788765421 1     12689


Q ss_pred             cEEEecCCCCcc
Q 005421          642 DFVICQNSVPQI  653 (697)
Q Consensus       642 DLVIGGpPCQ~F  653 (697)
                      |+|+.-||+-..
T Consensus       121 D~Ii~npPy~~~  132 (259)
T 3lpm_A          121 DIVTCNPPYFAT  132 (259)
T ss_dssp             EEEEECCCC---
T ss_pred             cEEEECCCCCCC
Confidence            999999998766

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.59  E-value=0.005  Score=59.19  Aligned_cols=83  Identities=14%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             CCCCCcccccCCC-CChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          561 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       561 fp~~itvLSLFSG-iGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+.+|||+.|| .|.+.+.+.+. +.   .|+++|+++.+....+.+....+. ...++.+|+..+..  +     ..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~  121 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V-----VE  121 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T-----CC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c-----cc
Confidence            3457899999999 99999998887 54   478999999998888776554322 23345677653321  1     12


Q ss_pred             CCccEEEecCCCCccc
Q 005421          639 GSIDFVICQNSVPQIP  654 (697)
Q Consensus       639 g~~DLVIGGpPCQ~FS  654 (697)
                      +.||+|+.-||+-...
T Consensus       122 ~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             SCEEEEEECCCCC---
T ss_pred             CceeEEEECCCCcCCc
Confidence            5799999999986654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.58  E-value=0.0029  Score=66.91  Aligned_cols=83  Identities=10%  Similarity=0.063  Sum_probs=57.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc------
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------  637 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~------  637 (697)
                      +-+|||||||+|++++.+.+.+   ..|++||+++.+.+..+.+....+-....++.+|+.++..    .+...      
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence            4579999999999999887744   3589999999999888877654322222345667654421    11110      


Q ss_pred             ------cCCccEEEecCCCCcc
Q 005421          638 ------LGSIDFVICQNSVPQI  653 (697)
Q Consensus       638 ------~g~~DLVIGGpPCQ~F  653 (697)
                            .+.||+|+--||+.+.
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g~  308 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSGL  308 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTCC
T ss_pred             cccccccCCCCEEEECcCcccc
Confidence                  0379999999998754

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.50  E-value=0.0052  Score=56.62  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||+.||.|++.+.+.+.|.  ..|+++|+++.+....+.+....+.. ...++.+|+.+...    .+....+.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f  117 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF  117 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence            356899999999999998777774  35889999999988887765443211 12244566654321    111113679


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+..+|
T Consensus       118 D~i~~~~~  125 (187)
T 2fhp_A          118 DLVLLDPP  125 (187)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998877

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.49  E-value=0.0016  Score=50.23  Aligned_cols=38  Identities=13%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      ..+++..|+.|||+++.+.+|+..+|  + ++.-++||+..
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~h   46 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLTH   46 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHcC
Confidence            34689999999999999999999997  2 78899999853

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.49  E-value=0.0043  Score=71.58  Aligned_cols=81  Identities=20%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-+|||||||.|++++.+-+.|.  ..|++||+++.+....+.+....+..  ...++.+|+.+.-    .   ...+.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~  609 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ  609 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence            467899999999999999988886  34899999999998888776543222  1223456664421    1   12257


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      ||+|+--|||-.
T Consensus       610 fD~Ii~DPP~f~  621 (703)
T 3v97_A          610 FDLIFIDPPTFS  621 (703)
T ss_dssp             EEEEEECCCSBC
T ss_pred             ccEEEECCcccc
Confidence            999999999843

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.45  E-value=0.0036  Score=76.93  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhccccccc
Q 005421          368 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH  417 (697)
Q Consensus       368 ~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~h  417 (697)
                      .+|.||++|||..+-.    ..+..|.+.|    |.+...++||..| .||+|.|.|+=
T Consensus       971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A          971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp             HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred             hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence            5799999999999854    2455665554    6788999999999 99999999963

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.44  E-value=0.0035  Score=51.37  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+++..|+.|||+++.+.+|+..++.+  ++.-++||+..+
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~   48 (63)
T 2dak_A            9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI   48 (63)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            3468999999999999999999999874  799999999875

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.44  E-value=0.0039  Score=51.44  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=34.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .+..|+.|||+++.+.+|+..+|..+ ++.-++||+..+
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~~   49 (64)
T 1whc_A           12 ALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHE   49 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhCC
Confidence            68999999999999999999998654 799999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.43  E-value=0.0043  Score=58.71  Aligned_cols=84  Identities=19%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      +..+.+.+.+|||+.||.|.+...+.+.|.  ..|+++|+++.+....+.+....+.....+..+|+.+..         
T Consensus        54 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------  122 (205)
T 3grz_A           54 IERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV---------  122 (205)
T ss_dssp             HHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---------
T ss_pred             HHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---------
Confidence            333344578999999999999999999875  357899999998887777654333222334556664431         


Q ss_pred             ccCCccEEEecCCCCc
Q 005421          637 KLGSIDFVICQNSVPQ  652 (697)
Q Consensus       637 ~~g~~DLVIGGpPCQ~  652 (697)
                       .+.+|+|+..+|.+.
T Consensus       123 -~~~fD~i~~~~~~~~  137 (205)
T 3grz_A          123 -DGKFDLIVANILAEI  137 (205)
T ss_dssp             -CSCEEEEEEESCHHH
T ss_pred             -CCCceEEEECCcHHH
Confidence             257999999887764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.43  E-value=0.0065  Score=62.93  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.||.+..+....-.-..|+++|+++...+.++.+....+.....++.+|+.++..        ..+.||
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  189 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD  189 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence            467899999999999988876421112478999999988888776554332223345677766532        125799


Q ss_pred             EEEecCCCCccccC
Q 005421          643 FVICQNSVPQIPNS  656 (697)
Q Consensus       643 LVIGGpPCQ~FS~a  656 (697)
                      +|+--+||.+....
T Consensus       190 ~Il~d~Pcsg~g~~  203 (315)
T 1ixk_A          190 KILLDAPCTGSGTI  203 (315)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEeCCCCCcccc
Confidence            99999999887653

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.43  E-value=0.0042  Score=51.23  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhh
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  179 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~  179 (697)
                      .+.+..|+.|||+++.|.+|+..|+-+  ++.-++||++.+.
T Consensus        10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~   49 (63)
T 1wji_A           10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK   49 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence            467999999999999999999999874  7888999998753

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.40  E-value=0.0049  Score=56.83  Aligned_cols=79  Identities=15%  Similarity=0.245  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.|++.+.+.+.|.  ..|+++|+++.+....+.+....+... ..++.+|+.+..    .   ...+.+
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~---~~~~~f  101 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI----D---CLTGRF  101 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----H---HBCSCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH----H---hhcCCC
Confidence            456899999999999998888874  358899999999888887654332111 123445554321    1   112569


Q ss_pred             cEEEecCCC
Q 005421          642 DFVICQNSV  650 (697)
Q Consensus       642 DLVIGGpPC  650 (697)
                      |+|+..+|.
T Consensus       102 D~i~~~~~~  110 (177)
T 2esr_A          102 DLVFLDPPY  110 (177)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEECCCC
Confidence            999988774

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.39  E-value=0.012  Score=61.31  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aG-f~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.++||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++..        ..+.+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~  273 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV  273 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence            45789999999999988777644 11 2368999999999888887665432222355677776542        12458


Q ss_pred             cEEEecCCCC
Q 005421          642 DFVICQNSVP  651 (697)
Q Consensus       642 DLVIGGpPCQ  651 (697)
                      |+|+.-|||-
T Consensus       274 D~Ii~npPyg  283 (354)
T 3tma_A          274 DRILANPPHG  283 (354)
T ss_dssp             SEEEECCCSC
T ss_pred             CEEEECCCCc
Confidence            9999999973

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=96.31  E-value=0.005  Score=48.90  Aligned_cols=40  Identities=20%  Similarity=0.181  Sum_probs=36.1

Q ss_pred             hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF-~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      +.+++..|+.||| +++.+.+|+..+|-+  ++.-+++|+..+
T Consensus        11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~   51 (53)
T 2knz_A           11 FQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence            7789999999999 999999999999985  788899998765

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.28  E-value=0.0068  Score=65.92  Aligned_cols=77  Identities=19%  Similarity=0.300  Sum_probs=57.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      ..+-+|||||||.|.+++.|.+.+.   .|+++|+++.+....+.+....+.. ..++.+|+.++..+          .+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f  354 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF  354 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence            3567899999999999999988774   4789999999988887765433322 33566777665321          69


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+|+--||..+
T Consensus       355 D~Vv~dPPr~g  365 (425)
T 2jjq_A          355 DTVIVDPPRAG  365 (425)
T ss_dssp             SEEEECCCTTC
T ss_pred             CEEEEcCCccc
Confidence            99999888643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.25  E-value=0.0039  Score=58.34  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      ..+.+|||+.||.|.+.+.+.+.+-. ..++++|+++.+....+.+....+. ...++.+|+.+    .+.......+.+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence            45789999999999999999888532 2578999999987777654432211 12234456554    111111123789


Q ss_pred             cEEEecCCCCccc
Q 005421          642 DFVICQNSVPQIP  654 (697)
Q Consensus       642 DLVIGGpPCQ~FS  654 (697)
                      |+|+..||+-...
T Consensus       103 D~i~~npp~~~~~  115 (215)
T 4dzr_A          103 HAIVSNPPYIPTG  115 (215)
T ss_dssp             SEEEECCCCCC--
T ss_pred             cEEEECCCCCCCc
Confidence            9999999986543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.23  E-value=0.0086  Score=62.48  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.||.++.+-.+ +=. ..|+++|+++...+.++.+....+.....++.+|..++....     ..++.|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence            4678999999999999887653 211 248999999999888888765443222334567777664321     113579


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |+|+--+||.++...
T Consensus       176 D~Vl~D~PcSg~G~~  190 (309)
T 2b9e_A          176 HYILLDPSCSGSGMP  190 (309)
T ss_dssp             EEEEECCCCCC----
T ss_pred             CEEEEcCCcCCCCCC
Confidence            999999999988754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.22  E-value=0.011  Score=62.77  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||++||.|++.+.+.+.|.. ..|+++|+|+.+.+..+.+....+.. ...+..+|+.++..        ..+.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~  286 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--------YVDS  286 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------TCSC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------ccCC
Confidence            45678999999999999998888751 14789999999988888776543221 12245677766542        1257


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      +|+|+.-||.
T Consensus       287 fD~Ii~npPy  296 (373)
T 3tm4_A          287 VDFAISNLPY  296 (373)
T ss_dssp             EEEEEEECCC
T ss_pred             cCEEEECCCC
Confidence            9999998885

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.21  E-value=0.0082  Score=60.13  Aligned_cols=80  Identities=9%  Similarity=0.061  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+.||.|.+.+.+...  +.   .|+++|+++.+....+.+....+.....+..+|+.+..         ..+.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~  176 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQ  176 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCC
Confidence            4568999999999999888754  33   47899999999888887654432222234556664321         1257


Q ss_pred             ccEEEecCCCCccc
Q 005421          641 IDFVICQNSVPQIP  654 (697)
Q Consensus       641 ~DLVIGGpPCQ~FS  654 (697)
                      ||+|+.-|||.+..
T Consensus       177 fD~Iv~npPy~~~~  190 (276)
T 2b3t_A          177 FAMIVSNPPYIDEQ  190 (276)
T ss_dssp             EEEEEECCCCBCTT
T ss_pred             ccEEEECCCCCCcc
Confidence            99999999998754

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.20  E-value=0.006  Score=51.74  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=35.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+.+..|+.|||+++.+.+|+..+|..+ ++.=++||+..+
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~~   49 (74)
T 2dag_A            9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHM   49 (74)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence            34689999999999999999999999743 788899999875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.20  E-value=0.008  Score=55.79  Aligned_cols=83  Identities=13%  Similarity=0.109  Sum_probs=55.9

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      ++...+.+-+|||+.||.|.+++.|.+.|.   .|+++|+++.+....+......+.....++.+|+..+..     +  
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~--   85 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y--   85 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--
Confidence            344556678999999999999999988865   378999999998887776554322112233345443321     1  


Q ss_pred             ccCCccEEEecCC
Q 005421          637 KLGSIDFVICQNS  649 (697)
Q Consensus       637 ~~g~~DLVIGGpP  649 (697)
                      ..+.||+|+..++
T Consensus        86 ~~~~fD~v~~~~~   98 (185)
T 3mti_A           86 VREPIRAAIFNLG   98 (185)
T ss_dssp             CCSCEEEEEEEEC
T ss_pred             ccCCcCEEEEeCC
Confidence            1257999987643

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.20  E-value=0.0042  Score=64.02  Aligned_cols=99  Identities=16%  Similarity=0.083  Sum_probs=61.4

Q ss_pred             hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc
Q 005421          540 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  617 (697)
Q Consensus       540 ~Lgnsfqvd--ti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l  617 (697)
                      .+|..|-++  .+...+..+.  ...+-+|||+.||.|.++..|.+.|.   .|+++|+|+......+......+.....
T Consensus        19 ~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~   93 (299)
T 2h1r_A           19 FQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLE   93 (299)
T ss_dssp             ----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             ccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceE
Confidence            556666432  2333333332  13457899999999999999988774   4789999999988887765432222233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEecCCCCcc
Q 005421          618 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  653 (697)
Q Consensus       618 i~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~F  653 (697)
                      ++.+|+.++.          ++.+|+|++-+|++..
T Consensus        94 ~~~~D~~~~~----------~~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           94 VYEGDAIKTV----------FPKFDVCTANIPYKIS  119 (299)
T ss_dssp             C----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred             EEECchhhCC----------cccCCEEEEcCCcccc
Confidence            5567776653          2468999999998753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.18  E-value=0.0059  Score=66.06  Aligned_cols=80  Identities=9%  Similarity=0.015  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhh-c
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K  637 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~-~  637 (697)
                      .+.+|||||||.|++++-+-+.  |.  ..|++||+++.+.+.++.+-...+-..  ..++.+|+.++        .. .
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~  121 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE  121 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence            4678999999999998866553  43  458999999999999988765432111  22334554332        22 1


Q ss_pred             -cCCccEEEecCCCCc
Q 005421          638 -LGSIDFVICQNSVPQ  652 (697)
Q Consensus       638 -~g~~DLVIGGpPCQ~  652 (697)
                       .+.||+|+--|||..
T Consensus       122 ~~~~fD~V~lDP~g~~  137 (392)
T 3axs_A          122 WGFGFDYVDLDPFGTP  137 (392)
T ss_dssp             CSSCEEEEEECCSSCC
T ss_pred             hCCCCcEEEECCCcCH
Confidence             247999999988763

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.18  E-value=0.0059  Score=53.14  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+++..|+.|||+++.|.+|+..+|-+  ++.-++||++.+
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~   68 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG   68 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            3468999999999999999999999976  788899999875

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.16  E-value=0.0022  Score=52.87  Aligned_cols=42  Identities=24%  Similarity=0.445  Sum_probs=36.7

Q ss_pred             CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      |..-.++.++.|||+.+.+.||||..|. |++..+|.|++...
T Consensus        18 se~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D   59 (63)
T 1wgn_A           18 SERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSG   59 (63)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSC
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            3334689999999999999999999998 99999999998643

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.14  E-value=0.01  Score=58.26  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~-~  638 (697)
                      .+.+||||.||.|++.+.+.+.  +.   .|+++|+++.+....+.+....+... ..++.+|+.+.-.+.+.   .. .
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~  138 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE  138 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence            4678999999999988776654  43   47899999999888877654433222 23456676552111111   00 1


Q ss_pred             CCccEEEecCCCCccc
Q 005421          639 GSIDFVICQNSVPQIP  654 (697)
Q Consensus       639 g~~DLVIGGpPCQ~FS  654 (697)
                      +.||+|+.-||+-...
T Consensus       139 ~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          139 IIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCBSEEEECCCCC---
T ss_pred             CcccEEEECCCCccCc
Confidence            4799999999987554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.12  E-value=0.011  Score=60.41  Aligned_cols=82  Identities=16%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+||||.||.|.+.+.+.+. +.   .|+++|+++.+....+.+....+... ..++.+|+.+.-    .   ..++.+
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----~---~~f~~~  193 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----K---EKFASI  193 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----G---GGTTTC
T ss_pred             CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----c---cccCCC
Confidence            468999999999999998877 43   47899999999988887655432222 234567776421    1   223444


Q ss_pred             cEEEecCCCCcccc
Q 005421          642 DFVICQNSVPQIPN  655 (697)
Q Consensus       642 DLVIGGpPCQ~FS~  655 (697)
                      |+|+.-|||-+...
T Consensus       194 D~IvsnPPyi~~~~  207 (284)
T 1nv8_A          194 EMILSNPPYVKSSA  207 (284)
T ss_dssp             CEEEECCCCBCGGG
T ss_pred             CEEEEcCCCCCccc
Confidence            99999999987664

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.09  E-value=0.01  Score=58.46  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc--------CCCCCccccccccccChhhHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL  634 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~--------n~~g~li~~~DI~~Lt~~~I~~l  634 (697)
                      .+.+|||++||.|++.+.+.+.+-. ..|++||+++.+....+.+....        +.....++.+|+.+.-...+   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~---  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF---  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence            4678999999999999999887632 24789999998877766554321        11222345677765211111   


Q ss_pred             hhccCCccEEEecCCCCcc
Q 005421          635 IHKLGSIDFVICQNSVPQI  653 (697)
Q Consensus       635 ~~~~g~~DLVIGGpPCQ~F  653 (697)
                        ..+.+|.|+--.|...+
T Consensus       125 --~~~~~d~v~~~~p~p~~  141 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHF  141 (246)
T ss_dssp             --CTTCEEEEEEESCCCC-
T ss_pred             --cccccCEEEEECCCccc
Confidence              12578888877766433

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=96.07  E-value=0.0074  Score=44.38  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI  174 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I  174 (697)
                      ..+.+..|+.|||+++.+.+|+..|+-+  ++.=+++|
T Consensus         4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L   39 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence            4568999999999999999999999764  56666665

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.05  E-value=0.0074  Score=49.86  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .+..|+.||||++.+.+|+..+|..+ ++.=++||++.+
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h~   49 (64)
T 2crn_A           12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC   49 (64)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence            47899999999999999999999844 788999999875

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.02  E-value=0.0074  Score=49.73  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      .+..+++|||+++.+.+|++..+- |.+.=+|+|++.+
T Consensus        12 ~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~   48 (63)
T 1wji_A           12 ALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence            689999999999999999999986 8999999999864

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=96.01  E-value=0.0087  Score=64.49  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=33.1

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      ..+.+..|+.|||+++.|.+|+..++.+  .+.=++||++
T Consensus       168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn--~~~A~e~L~~  205 (368)
T 1oqy_A          168 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT  205 (368)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTTT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence            6789999999999999999999999985  4677788863

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=95.97  E-value=0.0068  Score=45.78  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      .+..+++|||+++.+.+|++..+. |.+.=+++|+.
T Consensus         7 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~   41 (43)
T 2g3q_A            7 AVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHc
Confidence            588999999999999999999965 99999999985

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.97  E-value=0.0075  Score=51.03  Aligned_cols=40  Identities=20%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..++++.|+.|||+++.|.+|+..||.+  ++.=++||+..+
T Consensus        29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~Ave~L~~~~   68 (73)
T 1wiv_A           29 DQSSVDTLLSFGFAEDVARKALKASGGD--IEKATDWVFNNS   68 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHSC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence            4568999999999999999999999963  788899999764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.94  E-value=0.013  Score=58.80  Aligned_cols=89  Identities=16%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~---~n~~g-~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+||||.||.|.+.+.+.+.+-. ..|++||+++.+....+.+...   .+... ..++.+|+.++....+.... ..
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~  113 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD  113 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence            3568999999999999988776422 3578999999998888876543   21111 23456788776332211100 12


Q ss_pred             CCccEEEecCCCCcc
Q 005421          639 GSIDFVICQNSVPQI  653 (697)
Q Consensus       639 g~~DLVIGGpPCQ~F  653 (697)
                      +.||+|+.-||....
T Consensus       114 ~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCEEEEEECCCC---
T ss_pred             CCcCEEEECCCCcCC
Confidence            579999999998765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.94  E-value=0.026  Score=53.31  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.+++.+.+.|=. ..|+++|+++......+.+....+.....++.+|+.+.-.        ..+.+|
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence            4678999999999999999888721 3478999999998888776544332222244566643221        225799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+.+.+..
T Consensus       111 ~i~~~~~~~  119 (204)
T 3e05_A          111 RVFIGGSGG  119 (204)
T ss_dssp             EEEESCCTT
T ss_pred             EEEECCCCc
Confidence            999877654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.91  E-value=0.0089  Score=65.89  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||+||.||.++.+-.+ +=. -.|+++|+++...+.++.+....+.....+..+|..++.     ..  ..+.|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F  176 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF  176 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence            4678999999999999887654 211 147899999999888887655443222223345554332     11  12579


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |+|+--+||.+....
T Consensus       177 D~Il~DaPCSg~G~~  191 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMF  191 (456)
T ss_dssp             EEEEEECCCCCGGGT
T ss_pred             CEEEECCCCCCcccc
Confidence            999999999988754

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.83  E-value=0.0069  Score=51.38  Aligned_cols=39  Identities=13%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ..+.+|+.|||+++.+.||+...|..|++.=+|+|+...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~   49 (74)
T 2dag_A           11 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM   49 (74)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            368999999999999999999999889999999999864

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.81  E-value=0.0075  Score=49.77  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .+..|+.|||+++.+.+|+..+|..+ ++.=++||+..+
T Consensus        22 ~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~~   59 (64)
T 2cpw_A           22 ALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSHS   59 (64)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhCC
Confidence            68999999999999999999999733 788899998764

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.76  E-value=0.0061  Score=47.66  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      .+..+++|||+++.|.+|++..+- |.+.-+|+|++
T Consensus        11 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~   45 (49)
T 1ify_A           11 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            579999999999999999999986 89999999987

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.73  E-value=0.016  Score=64.14  Aligned_cols=86  Identities=16%  Similarity=-0.016  Sum_probs=60.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||||+||.||.++.+-.+--.--.|+++|+++...+.++.+....+.. ..+..+|..++.     ..  ..+.||
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD  172 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH  172 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence            4678999999999999888754111114789999999998888766544333 334455655432     11  125799


Q ss_pred             EEEecCCCCccccC
Q 005421          643 FVICQNSVPQIPNS  656 (697)
Q Consensus       643 LVIGGpPCQ~FS~a  656 (697)
                      +|+--+||.+....
T Consensus       173 ~Il~D~PcSg~G~~  186 (464)
T 3m6w_A          173 RVLLDAPCSGEGMF  186 (464)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEECCCcCCcccc
Confidence            99999999987754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.69  E-value=0.017  Score=63.91  Aligned_cols=86  Identities=9%  Similarity=0.059  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||+||.||.++.+... +-. -.|+++|+++...+.++.+....+.....++.+|..++..     .  ..+.|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence            4678999999999999887764 211 2478999999998888876554332222344566665421     0  12579


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |+|+--+||.+....
T Consensus       189 D~Il~D~PcSg~G~~  203 (479)
T 2frx_A          189 DAILLDAPCSGEGVV  203 (479)
T ss_dssp             EEEEEECCCCCGGGG
T ss_pred             CEEEECCCcCCcccc
Confidence            999999999987653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.68  E-value=0.021  Score=54.21  Aligned_cols=76  Identities=22%  Similarity=0.323  Sum_probs=55.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+||||-||.|.+...+.+.|.   .++++|+++......+......+ ....++.+|+.++..        ..+.+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~~  104 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKTF  104 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTCE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCcE
Confidence            3467999999999999999999986   47899999998887776654332 233355677776531        12479


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+..++
T Consensus       105 D~v~~~~~  112 (227)
T 1ve3_A          105 DYVIFIDS  112 (227)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEcCc
Confidence            99987766

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=95.67  E-value=0.011  Score=63.34  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc---------------CCCCCcccccccccc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL  626 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~---------------n~~g~li~~~DI~~L  626 (697)
                      .+.+|||||||.|++++.+-+. |-  ..|+++|+++.+.+..+.+....               +.....++.+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            3678999999999999887765 52  23899999999999988876533               111111233444322


Q ss_pred             ChhhHHHhhhc-cCCccEEEecCCCCc
Q 005421          627 TTKKFESLIHK-LGSIDFVICQNSVPQ  652 (697)
Q Consensus       627 t~~~I~~l~~~-~g~~DLVIGGpPCQ~  652 (697)
                              ... .+.||+|+--|||..
T Consensus       125 --------~~~~~~~fD~I~lDP~~~~  143 (378)
T 2dul_A          125 --------MAERHRYFHFIDLDPFGSP  143 (378)
T ss_dssp             --------HHHSTTCEEEEEECCSSCC
T ss_pred             --------HHhccCCCCEEEeCCCCCH
Confidence                    211 247999999999873

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.67  E-value=0.012  Score=60.19  Aligned_cols=78  Identities=17%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||+-||.|.++..|.+.|.   .|+++|+|+.....++......+. ....++.+|+.++.          +..+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~----------~~~f   94 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----------LPFF   94 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----------CCCC
T ss_pred             CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc----------chhh
Confidence            457899999999999999998885   378999999988888775432211 11234567776653          2368


Q ss_pred             cEEEecCCCCcc
Q 005421          642 DFVICQNSVPQI  653 (697)
Q Consensus       642 DLVIGGpPCQ~F  653 (697)
                      |+|++..|++-.
T Consensus        95 D~vv~nlpy~~~  106 (285)
T 1zq9_A           95 DTCVANLPYQIS  106 (285)
T ss_dssp             SEEEEECCGGGH
T ss_pred             cEEEEecCcccc
Confidence            999999998753

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=95.67  E-value=0.013  Score=46.45  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=33.5

Q ss_pred             hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF-~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      +.+++..|+.||| +++.+.+|+..+|-+  ++.-+++|++
T Consensus        12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~   50 (52)
T 2jy5_A           12 FQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG   50 (52)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence            6678999999999 999999999999975  6888888875

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=95.66  E-value=0.015  Score=63.36  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~--n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +-+||||+||.|+.++.|.+.|.   .|++||+|+.+....+.+....  +.....++.+|+.+.-.. +.     .+.|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence            67899999999999999998885   4789999999999988876543  221223556777654111 11     1379


Q ss_pred             cEEEecCCCC
Q 005421          642 DFVICQNSVP  651 (697)
Q Consensus       642 DLVIGGpPCQ  651 (697)
                      |+|+--||=.
T Consensus       165 DvV~lDPPrr  174 (410)
T 3ll7_A          165 DYIYVDPARR  174 (410)
T ss_dssp             SEEEECCEEC
T ss_pred             eEEEECCCCc
Confidence            9999888744

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.61  E-value=0.032  Score=52.71  Aligned_cols=80  Identities=18%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.++..+.+.|.   .|+++|+++......+.+....+.....+..+|+.+...        ..+.+|
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  145 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------ARAPFD  145 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------cCCCcc
Confidence            467899999999999999988874   478999999988888776654332223345667765432        125799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+....+..+
T Consensus       146 ~i~~~~~~~~~  156 (210)
T 3lbf_A          146 AIIVTAAPPEI  156 (210)
T ss_dssp             EEEESSBCSSC
T ss_pred             EEEEccchhhh
Confidence            99987655443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=95.61  E-value=0.02  Score=61.98  Aligned_cols=84  Identities=15%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||||+||.|.+++.|.+.+.   .|+++|+++.+....+.+....+.....++.+|+.+.-.. +   ....+.+|
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~---~~~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-Q---PWAKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-S---GGGTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-h---hhhcCCCC
Confidence            456899999999999999988864   4789999999988887766443222233566777663211 0   00124799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+--||..+.
T Consensus       359 ~Vv~dPPr~g~  369 (433)
T 1uwv_A          359 KVLLDPARAGA  369 (433)
T ss_dssp             EEEECCCTTCC
T ss_pred             EEEECCCCccH
Confidence            99999998764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.55  E-value=0.028  Score=51.43  Aligned_cols=77  Identities=10%  Similarity=0.023  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+.||.|.+...+.+.|.   .++++|+++.+....+......+...  ..+..+|+.+...         .+.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~  119 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence            457899999999999999888864   47899999998888777654332222  2344566654321         257


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      +|+|+..+|-.
T Consensus       120 ~D~v~~~~~~~  130 (194)
T 1dus_A          120 YNKIITNPPIR  130 (194)
T ss_dssp             EEEEEECCCST
T ss_pred             ceEEEECCCcc
Confidence            99999876643

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.54  E-value=0.01  Score=51.52  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ...+..++.|||+++.+.||+...|..|++.=+|+|+...
T Consensus        30 e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~   69 (84)
T 1vek_A           30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            3478999999999999999999999889999999999864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.50  E-value=0.013  Score=60.93  Aligned_cols=80  Identities=13%  Similarity=-0.030  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCc----eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIK----LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~----~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|||++||.|++.+.+.+..-.    -..++++|+++.+..+.+.+....+. ...+..+|.-...         ..
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~  199 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV  199 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence            4689999999999999887654321    13579999999998888775443322 2224455543211         12


Q ss_pred             CCccEEEecCCCCc
Q 005421          639 GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 g~~DLVIGGpPCQ~  652 (697)
                      +.+|+|++-||..-
T Consensus       200 ~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          200 DPVDVVISDLPVGY  213 (344)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             CCccEEEECCCCCC
Confidence            57999999999743

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.48  E-value=0.033  Score=60.55  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.||.+..+...--.-..|+++|+++.....++.+....+.....++.+|+.++... +     .-+.||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence            4578999999999999888764111024789999999888887765543322233455677665421 1     114699


Q ss_pred             EEEecCCCCccccC
Q 005421          643 FVICQNSVPQIPNS  656 (697)
Q Consensus       643 LVIGGpPCQ~FS~a  656 (697)
                      +|+--+||.++...
T Consensus       333 ~Vl~D~Pcsg~g~~  346 (450)
T 2yxl_A          333 KVLLDAPCTSSGTI  346 (450)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEcCCCCCCeee
Confidence            99999999988764

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.45  E-value=0.0097  Score=49.10  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      .+..++.|||+++.+.+|+...|..|++.=+|+|+..
T Consensus        22 ~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~   58 (64)
T 2cpw_A           22 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   58 (64)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            5899999999999999999999987999999999964

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.44  E-value=0.011  Score=50.26  Aligned_cols=38  Identities=16%  Similarity=0.382  Sum_probs=34.5

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ..+..+++|||+++.|.+|++..+- |.+.-+|+||+.+
T Consensus        31 e~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~   68 (73)
T 1vg5_A           31 EQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS   68 (73)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence            3689999999999999999999986 9999999999743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=95.43  E-value=0.026  Score=60.42  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=58.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||||.||.|.+.+.+.+.|.   .|++||+++.+....+.+....+ ....++.+|+.+....        .+.||
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~-~~v~~~~~D~~~~~~~--------~~~fD  300 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANA-LKAQALHSDVDEALTE--------EARFD  300 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTT-CCCEEEECSTTTTSCT--------TCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcC-CCeEEEEcchhhcccc--------CCCeE
Confidence            467899999999999999999986   36899999999888887765432 2233556777665321        25799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+.-+|..
T Consensus       301 ~Ii~npp~~  309 (381)
T 3dmg_A          301 IIVTNPPFH  309 (381)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCchh
Confidence            999888865

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.019  Score=49.76  Aligned_cols=40  Identities=18%  Similarity=0.139  Sum_probs=34.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+.+..|+.|||+++.+.+|+..|+.+  ++.=++||+..+
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~n--ve~A~ewL~~~~   68 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNHMS--VPQAMEWLIEHA   68 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHGG
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence            4468999999999999999999999643  788899999875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.41  E-value=0.022  Score=53.29  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=58.2

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc
Q 005421          558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      ..+.+.+.+|||+-||.|.+...+.+.|..  .++++|+++.+....+.....  .....+..+|+.++..        .
T Consensus        37 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------~  104 (215)
T 2pxx_A           37 EPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------P  104 (215)
T ss_dssp             GGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------C
T ss_pred             HHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------C
Confidence            333456789999999999999999999873  578999999998887765432  1223345677776531        1


Q ss_pred             cCCccEEEecCCCC
Q 005421          638 LGSIDFVICQNSVP  651 (697)
Q Consensus       638 ~g~~DLVIGGpPCQ  651 (697)
                      .+.+|+|+...+..
T Consensus       105 ~~~fD~v~~~~~~~  118 (215)
T 2pxx_A          105 SASFDVVLEKGTLD  118 (215)
T ss_dssp             SSCEEEEEEESHHH
T ss_pred             CCcccEEEECcchh
Confidence            25799999766543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.31  E-value=0.03  Score=60.28  Aligned_cols=79  Identities=11%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  605 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~-------------------------------------k~VvaVEid~~ar~t~~  605 (697)
                      .+.++||+|||.|++.+-+...+.++                                     ..|+++|+|+.+....+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            45789999999999976555433221                                     13789999999998888


Q ss_pred             HHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421          606 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       606 ~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC  650 (697)
                      .+....+... ..+..+|+.++..         .+.+|+|+.-||-
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence            7765443222 2355678876643         1479999988883

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.29  E-value=0.033  Score=55.44  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.+...|.+.|.+   |+++|+++.+....+......+. ...+..+|+.++..         .+.+|
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD  186 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD  186 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence            4678999999999999999999974   68999999988877776543322 22345677766542         25799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+...+..
T Consensus       187 ~i~~~~~~~  195 (286)
T 3m70_A          187 FIVSTVVFM  195 (286)
T ss_dssp             EEEECSSGG
T ss_pred             EEEEccchh
Confidence            999766443

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.29  E-value=0.017  Score=54.08  Aligned_cols=82  Identities=12%  Similarity=0.076  Sum_probs=55.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhcc
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+.+|||+.||.|++...+.+. |-. ..|+++|+++.+....+.+....+. ....++.+|+.++..     .  ..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~   91 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID   91 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence            345679999999999999888765 211 2478999999988888776554321 122245667655432     1  12


Q ss_pred             CCccEEEecCCC
Q 005421          639 GSIDFVICQNSV  650 (697)
Q Consensus       639 g~~DLVIGGpPC  650 (697)
                      +.+|+|+..+|-
T Consensus        92 ~~fD~v~~~~~~  103 (197)
T 3eey_A           92 CPVKAVMFNLGY  103 (197)
T ss_dssp             SCEEEEEEEESB
T ss_pred             CCceEEEEcCCc
Confidence            579999988766

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.26  E-value=0.032  Score=50.64  Aligned_cols=75  Identities=11%  Similarity=0.032  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++.+....+......+.....++.+|+.+    .+.     .+.+|
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D  102 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN  102 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence            456899999999999999988443   478999999988888776544322222234556543    111     15799


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+..+|
T Consensus       103 ~i~~~~~  109 (183)
T 2yxd_A          103 KAFIGGT  109 (183)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9998887

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.23  E-value=0.047  Score=52.37  Aligned_cols=96  Identities=18%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCcccccccc
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQ  624 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf----~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~  624 (697)
                      +..|......+.+|||+-||.|.+...+.+.+-    +-..|+++|+++......+.+....+     .....+..+|+.
T Consensus        71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  150 (227)
T 2pbf_A           71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY  150 (227)
T ss_dssp             HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred             HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence            333433334567999999999999988887652    11247899999998887776654332     122234566776


Q ss_pred             ccChhhHHHhhhccCCccEEEecCCCCcc
Q 005421          625 ALTTKKFESLIHKLGSIDFVICQNSVPQI  653 (697)
Q Consensus       625 ~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~F  653 (697)
                      +...+...    ..+.||+|+...++..+
T Consensus       151 ~~~~~~~~----~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          151 QVNEEEKK----ELGLFDAIHVGASASEL  175 (227)
T ss_dssp             GCCHHHHH----HHCCEEEEEECSBBSSC
T ss_pred             hcccccCc----cCCCcCEEEECCchHHH
Confidence            54311101    12579999988877643

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.20  E-value=0.025  Score=49.06  Aligned_cols=41  Identities=22%  Similarity=0.181  Sum_probs=35.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+.+..|+.|||+++.+.+|+...|..+ ++.=++||++.+
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h~   69 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHM   69 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhCC
Confidence            45689999999999999999999998654 788899999875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.19  E-value=0.033  Score=60.00  Aligned_cols=86  Identities=12%  Similarity=0.109  Sum_probs=61.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.||.+..+...+-. ..|+++|+++...+.++.+....+. ...+..+|..++... +     ..+.||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence            3568999999999999998876532 3578999999988888776554322 223456677665311 1     125799


Q ss_pred             EEEecCCCCccccC
Q 005421          643 FVICQNSVPQIPNS  656 (697)
Q Consensus       643 LVIGGpPCQ~FS~a  656 (697)
                      +|+.-+||.++...
T Consensus       318 ~Vl~D~Pcsg~g~~  331 (429)
T 1sqg_A          318 RILLDAPCSATGVI  331 (429)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeCCCCccccc
Confidence            99999999988654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.18  E-value=0.023  Score=60.88  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  605 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~-------------------------------------k~VvaVEid~~ar~t~~  605 (697)
                      .+.++||+|||.|++.+.+-..|-++                                     ..|+++|+|+.+....+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            46789999999999887665543211                                     24789999999998888


Q ss_pred             HHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421          606 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  649 (697)
Q Consensus       606 ~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP  649 (697)
                      .+....+... ..+..+|+.++..         .+.+|+|+.=||
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP  310 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP  310 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred             HHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence            7655433211 2245567766542         146999998888

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.16  E-value=0.017  Score=59.38  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+ +|||+-||.|.++..|.+.|.   .|+++|+|+.....++.....   ....++.+|+.+++-..+       ..+|
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-------~~~~  112 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-------PQGS  112 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-------CTTE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-------cCcc
Confidence            35 899999999999999999984   478999999999888775432   123366789988764322       2578


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+|-.|=+
T Consensus       113 ~iv~NlPy~  121 (271)
T 3fut_A          113 LLVANLPYH  121 (271)
T ss_dssp             EEEEEECSS
T ss_pred             EEEecCccc
Confidence            999988743

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.14  E-value=0.022  Score=56.77  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+|||+-||.|.+.+.+.+.|.   .|+++|+++.+....+.+....+.. ..+..+|+.+.    +     ..+.+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f  185 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF  185 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence            4567899999999999999999996   4789999999988887765433211 22334454331    1     12579


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+...+
T Consensus       186 D~Vv~n~~  193 (254)
T 2nxc_A          186 DLLVANLY  193 (254)
T ss_dssp             EEEEEECC
T ss_pred             CEEEECCc
Confidence            99997554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.13  E-value=0.049  Score=50.38  Aligned_cols=74  Identities=16%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.+|||+-||.|.+...+.+.|.+   ++++|+++.+....+......+.....+...|+.++..         .+.+|+
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~  100 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF  100 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence            458999999999999999988863   68999999988877776544322223345667766531         257899


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+....
T Consensus       101 v~~~~~  106 (199)
T 2xvm_A          101 ILSTVV  106 (199)
T ss_dssp             EEEESC
T ss_pred             EEEcch
Confidence            886543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.07  E-value=0.019  Score=58.35  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=62.5

Q ss_pred             Hhhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC
Q 005421          539 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  616 (697)
Q Consensus       539 k~Lgnsfqvd--ti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~  616 (697)
                      |.+|-.|-+|  .+..++..+.  ...+-+|||+-||.|.++..|.+.|-   .|++||+|+.....++..+..  ....
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v   77 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI   77 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred             CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence            3446666442  2333333332  12357899999999999999998883   478999999999888876542  1223


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421          617 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  649 (697)
Q Consensus       617 li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP  649 (697)
                      .++.+|+.++.-..+.    ..+.+| |||-+|
T Consensus        78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred             EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence            3667899888643321    013567 777766

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.06  E-value=0.017  Score=50.27  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=35.0

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      .+..++.|||+++.|.+|++..+. |++.=+|+|+..+.
T Consensus        32 ~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~   69 (83)
T 1veg_A           32 SINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGG   69 (83)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            589999999999999999999996 79999999999765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.06  E-value=0.024  Score=58.96  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc
Q 005421          540 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  617 (697)
Q Consensus       540 ~Lgnsfqvd--ti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l  617 (697)
                      .+|-.|-+|  .+...+..+..  ..+-+|||+-||.|.++..|.+.|-   .|++||+|+.....++.....  .....
T Consensus        27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~   99 (295)
T 3gru_A           27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIE   99 (295)
T ss_dssp             ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEE
T ss_pred             ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeE
Confidence            346655332  33444444321  2456899999999999999988874   478999999998888876542  12233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421          618 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  651 (697)
Q Consensus       618 i~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ  651 (697)
                      ++.+|+.++.-..        ..+|+|++-.|-+
T Consensus       100 vi~gD~l~~~~~~--------~~fD~Iv~NlPy~  125 (295)
T 3gru_A          100 IIWGDALKVDLNK--------LDFNKVVANLPYQ  125 (295)
T ss_dssp             EEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred             EEECchhhCCccc--------CCccEEEEeCccc
Confidence            6678998775321        2589999888743

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.04  E-value=0.042  Score=52.61  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccC
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALT  627 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt  627 (697)
                      +..|......+.+|||+-||.|+++..+.+. |-. ..|+++|+++......+......+     .....+..+|+....
T Consensus        68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence            3344433455789999999999999888765 422 247899999998877776554321     111223456665332


Q ss_pred             hhhHHHhhhccCCccEEEecCCCCcc
Q 005421          628 TKKFESLIHKLGSIDFVICQNSVPQI  653 (697)
Q Consensus       628 ~~~I~~l~~~~g~~DLVIGGpPCQ~F  653 (697)
                      .        ..+.||+|+...||..+
T Consensus       147 ~--------~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          147 A--------EEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             G--------GGCCEEEEEECSBBSSC
T ss_pred             c--------cCCCcCEEEECCchHHH
Confidence            1        12579999999998764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=94.99  E-value=0.015  Score=54.24  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||+.||.|.+...+.+.|    .|+++|+++.+.+.       .  ....+..+|+.+.-.         .+.||+
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~---------~~~fD~   81 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSIN---------QESVDV   81 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBC---------GGGCSE
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhcc---------cCCCCE
Confidence            4589999999999999999988    47899999997644       1  122355678765221         147999


Q ss_pred             EEecCCCCccc
Q 005421          644 VICQNSVPQIP  654 (697)
Q Consensus       644 VIGGpPCQ~FS  654 (697)
                      |+..+|-...+
T Consensus        82 i~~n~~~~~~~   92 (170)
T 3q87_B           82 VVFNPPYVPDT   92 (170)
T ss_dssp             EEECCCCBTTC
T ss_pred             EEECCCCccCC
Confidence            99987755433

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=94.92  E-value=0.081  Score=62.50  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCC
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVM  132 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~  132 (697)
                      .+++.++.||||+....||+...|..+++.-.+.|++.-.            |.++++.-...  ..+..........  
T Consensus       654 ~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmd------------d~di~~p~~~~--~~~~~~s~~~~~~--  717 (854)
T 3ihp_A          654 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD------------DPDFANPLILP--GSSGPGSTSAAAD--  717 (854)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTT------------SCGGGSCCCCC-----------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccC------------ccccccccccc--ccccccccccccC--
Confidence            3789999999999999999999999999999999986432            01111111100  0000000000000  


Q ss_pred             chhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          133 DEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       133 s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .  ...+.+..|..|||+.+.+.+|+++.+.+  ++.-+|+|++..
T Consensus       718 ~--~~~e~i~~l~~mGf~~~~a~~aL~~t~~~--~eraidwlfs~~  759 (854)
T 3ihp_A          718 P--PPEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI  759 (854)
T ss_dssp             ---CCHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHcCCCHHHHHHHHHhhcCc--HHHHHHhhhcCc
Confidence            1  14467899999999999999999999875  688899999764

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.92  E-value=0.023  Score=45.66  Aligned_cols=39  Identities=13%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      ..+-++.|+.|||+++.|.+|+++-|... ++.-+|+|.-
T Consensus         9 n~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k   47 (54)
T 2cos_A            9 NRQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISK   47 (54)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence            55678999999999999999999999976 8999999873

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.91  E-value=0.042  Score=59.07  Aligned_cols=79  Identities=10%  Similarity=0.104  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  605 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~-------------------------------------k~VvaVEid~~ar~t~~  605 (697)
                      .+-+++|.|||.|++.+-+...+.++                                     ..++++|+|+.+.+..+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            45779999999999876555433221                                     13789999999999888


Q ss_pred             HHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421          606 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       606 ~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC  650 (697)
                      .+....+-.. ..+..+|+.++...         +.+|+|+.-||-
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY  310 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY  310 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence            8765543222 23456787776531         479999988884

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=94.90  E-value=0.027  Score=54.05  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  633 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~  633 (697)
                      +..+..+.+.+.+|||+-||.|.+...+.+.|.+   |+++|+++.+....+...   ......++.+|+.++..     
T Consensus        44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~-----  112 (242)
T 3l8d_A           44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF-----  112 (242)
T ss_dssp             HHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS-----
T ss_pred             HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC-----
Confidence            3444555567789999999999999999999874   689999999877765421   11223345677776541     


Q ss_pred             hhhccCCccEEEec
Q 005421          634 LIHKLGSIDFVICQ  647 (697)
Q Consensus       634 l~~~~g~~DLVIGG  647 (697)
                         ..+.+|+|+..
T Consensus       113 ---~~~~fD~v~~~  123 (242)
T 3l8d_A          113 ---ENEQFEAIMAI  123 (242)
T ss_dssp             ---CTTCEEEEEEE
T ss_pred             ---CCCCccEEEEc
Confidence               12468888854

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.87  E-value=0.043  Score=50.22  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+.+|||+-||.|.+...+.+.|.+   ++++|+++.+....+....     ...++..|+.++..        ..+.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~  107 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD  107 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence            456789999999999999999999863   6889999998877765431     22345677766531        1257


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      +|+|+..+++-.
T Consensus       108 ~D~i~~~~~~~~  119 (195)
T 3cgg_A          108 FDLIVSAGNVMG  119 (195)
T ss_dssp             EEEEEECCCCGG
T ss_pred             eeEEEECCcHHh
Confidence            999997655543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=94.86  E-value=0.016  Score=64.75  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=53.8

Q ss_pred             hhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEee
Q 005421          516 IELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIE  595 (697)
Q Consensus       516 ~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVE  595 (697)
                      +..|||-|- |......+-.+|+..+...+.  .+       ......+++|||+=||.|-++..|.++|..   |.+||
T Consensus        29 y~~i~~~~~-~~~~~~r~~~~r~~~i~~~~~--~~-------~~~~~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD   95 (569)
T 4azs_A           29 YQTIFGHPE-WDGDAARDCNQRLDLITEQYD--NL-------SRALGRPLNVLDLGCAQGFFSLSLASKGAT---IVGID   95 (569)
T ss_dssp             CBCCTTCGG-GTTTCSBCCHHHHHHHHHHHH--HH-------HHHHTSCCEEEEETCTTSHHHHHHHHTTCE---EEEEE
T ss_pred             HhhhcCChh-hccccccchHHHHHHHHHHHH--HH-------HhhcCCCCeEEEECCCCcHHHHHHHhCCCE---EEEEC
Confidence            344566553 322223345577765543331  11       111235689999999999999999999974   68999


Q ss_pred             CCHHHHHHHHHHHh
Q 005421          596 TSETNRRILKRWWE  609 (697)
Q Consensus       596 id~~ar~t~~~~~~  609 (697)
                      +++.+..+-+.+-.
T Consensus        96 ~~~~~i~~a~~~a~  109 (569)
T 4azs_A           96 FQQENINVCRALAE  109 (569)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999888776543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=94.84  E-value=0.0098  Score=62.62  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=58.2

Q ss_pred             Hhhhhhhccccchhhh-ccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC
Q 005421          539 ESLRHCFQTDTLGYHL-SVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE  616 (697)
Q Consensus       539 k~Lgnsfqvdti~~hL-svLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~  616 (697)
                      +.+|..|..+.++..+ ..+..  +.+.+|||+.||.|++.+.+.+. +- ...++++|+++.+....         ...
T Consensus        16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~-~~~i~gvDi~~~~~~~a---------~~~   83 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGT-AYRFVGVEIDPKALDLP---------PWA   83 (421)
T ss_dssp             -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCS-CSEEEEEESCTTTCCCC---------TTE
T ss_pred             ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCC-CCeEEEEECCHHHHHhC---------CCC
Confidence            4456656554444432 22222  23559999999999999988753 11 13578999999874322         112


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCCCCcccc
Q 005421          617 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  655 (697)
Q Consensus       617 li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~  655 (697)
                      .++.+|+.+...         .+.+|+|++-||......
T Consensus        84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE  113 (421)
T ss_dssp             EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred             cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence            245677765432         257999999999976654

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=94.83  E-value=0.02  Score=42.02  Aligned_cols=34  Identities=18%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   88 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL   88 (697)
                      .+..+++|||+++.+.+|++..+. |.+.=+++|+
T Consensus         7 ~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~   40 (40)
T 1z96_A            7 KIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence            578999999999999999999965 8888888774

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.77  E-value=0.032  Score=48.58  Aligned_cols=40  Identities=13%  Similarity=0.076  Sum_probs=34.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+++..|+.|||+++.|.+|+..++-+  ++.=++||++..
T Consensus        21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~   60 (85)
T 2dkl_A           21 MSRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK   60 (85)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence            4678999999999999999999766654  788899999764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=94.76  E-value=0.042  Score=52.07  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=56.7

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-----CCccccccccccChhhH
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKF  631 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-----g~li~~~DI~~Lt~~~I  631 (697)
                      ++.+.+.+.+|||+-||.|.+...+.+.|..   |+++|+++.+....+......+..     ...+...|+.++..   
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---   97 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF---   97 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS---
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC---
Confidence            4445567889999999999999999999864   689999999888777654322110     01234566655431   


Q ss_pred             HHhhhccCCccEEEecCCC
Q 005421          632 ESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       632 ~~l~~~~g~~DLVIGGpPC  650 (697)
                           ..+.+|+|+.....
T Consensus        98 -----~~~~~D~v~~~~~l  111 (235)
T 3sm3_A           98 -----HDSSFDFAVMQAFL  111 (235)
T ss_dssp             -----CTTCEEEEEEESCG
T ss_pred             -----CCCceeEEEEcchh
Confidence                 12579999975433

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=94.75  E-value=0.069  Score=51.38  Aligned_cols=75  Identities=16%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||.||.|.+++.+.+.|.   .|+++|+++.+....+.+....+.. ...++.+|+.+.-        ...+.+
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~  123 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP  123 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence            457899999999999999888865   3789999999988887765443322 2224556765421        122579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+-+.
T Consensus       124 D~v~~~~  130 (204)
T 3njr_A          124 EAVFIGG  130 (204)
T ss_dssp             SEEEECS
T ss_pred             CEEEECC
Confidence            9988554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=94.74  E-value=0.049  Score=54.25  Aligned_cols=76  Identities=16%  Similarity=0.007  Sum_probs=53.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+.||.|.++..+.+.|.   .|+++|+|+.....++.....  .....++.+|+.++.-..       ...+ 
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~-   96 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY-   96 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC-
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe-
Confidence            467899999999999999998883   478999999998888775432  122335678887764210       1234 


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      .|++.+|=+
T Consensus        97 ~vv~nlPy~  105 (244)
T 1qam_A           97 KIFGNIPYN  105 (244)
T ss_dssp             EEEEECCGG
T ss_pred             EEEEeCCcc
Confidence            577777643

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=94.73  E-value=0.032  Score=44.23  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      .+..+++||| +++.+.+|++..|. |++.-+|+|+..
T Consensus        14 ~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~   50 (53)
T 2knz_A           14 QLEQLNSMGFINREANLQALIATGG-DINAAIERLLGS   50 (53)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHc
Confidence            4789999999 99999999999997 999999999974

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=94.71  E-value=0.049  Score=52.05  Aligned_cols=82  Identities=20%  Similarity=0.083  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||||.||.|.+.+.+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+     ..+.+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence            3568999999999999988776311 2478999999998877766544332223355678776431 01     125799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+..+|..
T Consensus       114 ~i~~~~~~~  122 (214)
T 1yzh_A          114 RLYLNFSDP  122 (214)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            999887753

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=94.70  E-value=0.02  Score=48.38  Aligned_cols=37  Identities=11%  Similarity=0.360  Sum_probs=33.9

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      .+..++.|||+++.+.+|++..|. |++.=+|+|+..+
T Consensus        32 ~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~   68 (73)
T 1wiv_A           32 SVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence            589999999999999999999986 9999999999743

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=94.63  E-value=0.023  Score=44.94  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      .+..+++||| +++.+.+|++..|. |.+.-+|+|+.
T Consensus        15 ~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~   50 (52)
T 2jy5_A           15 QLEQLSAMGFLNREANLQALIATGG-DINAAIERLLG   50 (52)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            5899999999 99999999999987 89999999985

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.60  E-value=0.047  Score=43.82  Aligned_cols=38  Identities=16%  Similarity=0.275  Sum_probs=33.1

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      -|.++++|||+++-|.+|++.-.. |++.--.+|+.+..
T Consensus        12 ~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~   49 (53)
T 2d9s_A           12 EIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG   49 (53)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence            499999999999999999998876 89988888887643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=94.59  E-value=0.075  Score=50.20  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=51.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+.+||||-||.|.+...|.+.|..   |+++|+++......+...      +..+..+|+.++..         .+.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence            345679999999999999999999864   688999999877776543      12245567766651         257


Q ss_pred             ccEEEecC
Q 005421          641 IDFVICQN  648 (697)
Q Consensus       641 ~DLVIGGp  648 (697)
                      ||+|+...
T Consensus       103 fD~v~~~~  110 (211)
T 3e23_A          103 YDAVWAHA  110 (211)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            89888643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=94.55  E-value=0.064  Score=56.64  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=58.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccc-cChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~-Lt~~~I~~l~~~~g~~D  642 (697)
                      +.+||||+ |.|.+++.+.+.|.. ..|+++|+++.+....+.+....+.....++.+|+.+ +...       ..+.||
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~fD  243 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKFD  243 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCBS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCcc
Confidence            57899999 999999999888752 3578999999998888876554332223356678876 4311       114799


Q ss_pred             EEEecCCCCc
Q 005421          643 FVICQNSVPQ  652 (697)
Q Consensus       643 LVIGGpPCQ~  652 (697)
                      +|+-.+||..
T Consensus       244 ~Vi~~~p~~~  253 (373)
T 2qm3_A          244 TFITDPPETL  253 (373)
T ss_dssp             EEEECCCSSH
T ss_pred             EEEECCCCch
Confidence            9999999853

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=94.54  E-value=0.052  Score=50.83  Aligned_cols=73  Identities=16%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+ +|||+-||.|.+...|.+.|.+   ++++|+++.+....+......+. ...+...|+.++..        ..+.+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f   95 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW   95 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence            345 9999999999999999999873   68899999988777765543321 22244567765531        12468


Q ss_pred             cEEEec
Q 005421          642 DFVICQ  647 (697)
Q Consensus       642 DLVIGG  647 (697)
                      |+|+..
T Consensus        96 D~v~~~  101 (202)
T 2kw5_A           96 EGIVSI  101 (202)
T ss_dssp             SEEEEE
T ss_pred             cEEEEE
Confidence            999863

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.51  E-value=0.073  Score=51.92  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+.||.|+++..+.+. |=. ..++++|+++......+.+....+... ..+..+|+.+.-         ..+.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  162 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------EEEN  162 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------CCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------CCCC
Confidence            4678999999999999999887 311 347899999988887777654433222 234556765331         1246


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      +|+|+-.+|+.
T Consensus       163 ~D~v~~~~~~~  173 (255)
T 3mb5_A          163 VDHVILDLPQP  173 (255)
T ss_dssp             EEEEEECSSCG
T ss_pred             cCEEEECCCCH
Confidence            99999887765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=94.51  E-value=0.064  Score=55.87  Aligned_cols=84  Identities=13%  Similarity=0.101  Sum_probs=56.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||++||.||.++.+-+.+=. ..|+++|+|+.+....+.+....+ ....++.+|..++.. .+..+  ..+.||+
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D~  101 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVDG  101 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEEE
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCCE
Confidence            468999999999999988765201 247899999999888877554322 222345677765531 11110  1247999


Q ss_pred             EEecCCCCc
Q 005421          644 VICQNSVPQ  652 (697)
Q Consensus       644 VIGGpPCQ~  652 (697)
                      |+--+||..
T Consensus       102 Vl~D~gvSs  110 (301)
T 1m6y_A          102 ILMDLGVST  110 (301)
T ss_dssp             EEEECSCCH
T ss_pred             EEEcCccch
Confidence            999888864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=94.43  E-value=0.08  Score=48.27  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+....+.+....+. ....+..+|+.+        .....+.+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~  101 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI  101 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence            45789999999999999998888   3578999999988887776543322 111223444432        11122579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+|+...+...
T Consensus       102 D~v~~~~~~~~  112 (192)
T 1l3i_A          102 DIAVVGGSGGE  112 (192)
T ss_dssp             EEEEESCCTTC
T ss_pred             CEEEECCchHH
Confidence            99998876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=94.41  E-value=0.083  Score=50.62  Aligned_cols=78  Identities=17%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.++..+...|.   .|+++|+++......+......+  ...+..+|+.+.-.        ..+.+|
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD  136 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD  136 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence            456899999999999999998883   47899999998888776554221  22244566654211        125799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+...++..+
T Consensus       137 ~v~~~~~~~~~  147 (231)
T 1vbf_A          137 RVVVWATAPTL  147 (231)
T ss_dssp             EEEESSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99988776654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=94.38  E-value=0.051  Score=52.14  Aligned_cols=77  Identities=21%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhh--c
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH--K  637 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~--~  637 (697)
                      ++.+.+||||-||.||++..+.+.+-   .|++||+++..           ..++..++.+||++... +.+.....  .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            34578999999999999999887753   47899999852           12234466789988653 22322221  0


Q ss_pred             cCCccEEEecCCCC
Q 005421          638 LGSIDFVICQNSVP  651 (697)
Q Consensus       638 ~g~~DLVIGGpPCQ  651 (697)
                      .+.||+|+.-.|++
T Consensus        89 ~~~~D~Vlsd~~~~  102 (191)
T 3dou_A           89 IEKVDDVVSDAMAK  102 (191)
T ss_dssp             CSSEEEEEECCCCC
T ss_pred             CCcceEEecCCCcC
Confidence            14899999876654

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.37  E-value=0.057  Score=46.78  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      -..+.+++.|||+++.+.+|+...+ .|++.=+|+|+...
T Consensus        30 e~~i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~~   68 (83)
T 2dai_A           30 EAALRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEHA   68 (83)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHCC
Confidence            3368999999999999999999984 59999999999864

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=94.30  E-value=0.036  Score=54.38  Aligned_cols=76  Identities=18%  Similarity=0.162  Sum_probs=55.2

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh
Q 005421          556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  635 (697)
Q Consensus       556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~  635 (697)
                      .+....+.+.+||||-||.|.+...|.+.|.+   |+++|+++......+....     ...++.+|+.++..       
T Consensus        43 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-------  107 (263)
T 3pfg_A           43 LVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-------  107 (263)
T ss_dssp             HHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-------
T ss_pred             HHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-------
Confidence            34444566789999999999999999999863   6899999998877765321     23355678776542       


Q ss_pred             hccCCccEEEecC
Q 005421          636 HKLGSIDFVICQN  648 (697)
Q Consensus       636 ~~~g~~DLVIGGp  648 (697)
                        .+.+|+|+...
T Consensus       108 --~~~fD~v~~~~  118 (263)
T 3pfg_A          108 --GRRFSAVTCMF  118 (263)
T ss_dssp             --SCCEEEEEECT
T ss_pred             --cCCcCEEEEcC
Confidence              25789888543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=94.28  E-value=0.074  Score=50.76  Aligned_cols=74  Identities=16%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+......+. ...+..+|+.++..        . +.+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~-~~f  102 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------N-RKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------S-CCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--------c-CCc
Confidence            35679999999999999999998863   78899999988777765543221 22345677766531        1 579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+...
T Consensus       103 D~v~~~~  109 (246)
T 1y8c_A          103 DLITCCL  109 (246)
T ss_dssp             EEEEECT
T ss_pred             eEEEEcC
Confidence            9998643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=94.20  E-value=0.093  Score=51.65  Aligned_cols=81  Identities=14%  Similarity=0.138  Sum_probs=57.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||+-||.|.+...+.+.+.  ..|+++|+++......+......+... ..++.+|+.++..        ..+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~  114 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--------RNEE  114 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--------CCCC
Confidence            4578999999999999999988854  247899999998887776654332222 3345678876641        1257


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      ||+|+...+...
T Consensus       115 fD~i~~~~~~~~  126 (267)
T 3kkz_A          115 LDLIWSEGAIYN  126 (267)
T ss_dssp             EEEEEESSCGGG
T ss_pred             EEEEEEcCCcee
Confidence            999997665543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.19  E-value=0.24  Score=53.57  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcC------------CceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccCh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  628 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aG------------f~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~  628 (697)
                      .+.+|+|..||.||+.+.+.+.-            +....++++|+++.+.++.+.+..-++..  ...+..+|.-....
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            35789999999999988776420            01134789999999888776643322221  12345566543321


Q ss_pred             hhHHHhhhccCCccEEEecCCCCcccc
Q 005421          629 KKFESLIHKLGSIDFVICQNSVPQIPN  655 (697)
Q Consensus       629 ~~I~~l~~~~g~~DLVIGGpPCQ~FS~  655 (697)
                               .+.||+|++-||......
T Consensus       251 ---------~~~fD~Iv~NPPf~~~~~  268 (445)
T 2okc_A          251 ---------STLVDVILANPPFGTRPA  268 (445)
T ss_dssp             ---------SSCEEEEEECCCSSCCCT
T ss_pred             ---------cCCcCEEEECCCCCCccc
Confidence                     247999999999876543

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.17  E-value=0.031  Score=48.71  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=33.6

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ...+.+|+.|||+++.+.+|+ ..+..|.+.=+|+|+...
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL-~~~n~n~e~A~ewL~~h~   60 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEAL-KSNNMNLDQAMSALLEKK   60 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHH-HHTTSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHH-HHcCCCHHHHHHHHHHCc
Confidence            347899999999999999999 566679999999999743

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=94.15  E-value=0.097  Score=50.73  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||||.||.|.+...|.+.|..   |+++|+++......+......+. ...++.+|+.++..         .+.+|
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---------~~~fD  107 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---------KNEFD  107 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---------CSCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---------CCCcc
Confidence            4578999999999999999999874   68999999988877765543321 22345667766532         13578


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       108 ~v~~  111 (252)
T 1wzn_A          108 AVTM  111 (252)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7773

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=94.14  E-value=0.014  Score=45.46  Aligned_cols=37  Identities=19%  Similarity=0.081  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      .+.|..|+.|||++..|.+|+..||-+  .+.=+++|++
T Consensus         5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~   41 (47)
T 1dv0_A            5 KEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLS   41 (47)
T ss_dssp             HHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence            457899999999999999999999954  5666778764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=94.09  E-value=0.056  Score=55.23  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=33.8

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+|||+|||.|..++-|-..|..   |++||+++....+++...
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l  130 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGL  130 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHH
Confidence            78999999999999988888863   789999998666555443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.03  E-value=0.067  Score=57.01  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=53.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC---CccccccccccChhhHHHhhhccCC
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g---~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+||||+||.|.+++.+.+.+-. ..|++||+++.+....+.+....+-..   ..+..+|+.+.-         ..+.
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~  292 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR  292 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence            378999999999999999888411 247899999999888877655332110   112445554311         1257


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      ||+|+..||..
T Consensus       293 fD~Ii~nppfh  303 (375)
T 4dcm_A          293 FNAVLCNPPFH  303 (375)
T ss_dssp             EEEEEECCCC-
T ss_pred             eeEEEECCCcc
Confidence            99999998864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=94.01  E-value=0.064  Score=52.14  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||||-||.|.+...+.+.|..  .|+++|+++......+....   .....++.+|+.++..        ..+.+|
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence            4688999999999999999999863  57899999998877765432   1222345677766541        125789


Q ss_pred             EEEecC
Q 005421          643 FVICQN  648 (697)
Q Consensus       643 LVIGGp  648 (697)
                      +|+...
T Consensus       111 ~v~~~~  116 (253)
T 3g5l_A          111 VVLSSL  116 (253)
T ss_dssp             EEEEES
T ss_pred             EEEEch
Confidence            888654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=93.97  E-value=0.14  Score=49.47  Aligned_cols=85  Identities=13%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      ...+.+.+||||-||.|.+...|.+.|.   .|+++|+++.+....+....   .....++.+|+.++....-  + ...
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~--~-~~~  122 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ--I-HSE  122 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH--H-HHH
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc--c-ccc
Confidence            3345678899999999999999999886   37899999998877766431   2223355678877643211  0 001


Q ss_pred             CCccEEEecCCCCc
Q 005421          639 GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 g~~DLVIGGpPCQ~  652 (697)
                      ..+|+|+...-..-
T Consensus       123 ~~~d~v~~~~~~~~  136 (245)
T 3ggd_A          123 IGDANIYMRTGFHH  136 (245)
T ss_dssp             HCSCEEEEESSSTT
T ss_pred             cCccEEEEcchhhc
Confidence            24899987654443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=93.94  E-value=0.061  Score=63.48  Aligned_cols=85  Identities=11%  Similarity=0.088  Sum_probs=51.9

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHH--HHHHhh----cCCCCCccccccccccChhhH
Q 005421          560 MFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWES----SGQTGELVQIEDIQALTTKKF  631 (697)
Q Consensus       560 ~fp~~itvLSLFSGiGGlslGL~~a-G-f~~k~VvaVEid~~ar~t~--~~~~~~----~n~~g~li~~~DI~~Lt~~~I  631 (697)
                      ..+.+.+|+|.+||.|++-+.+.+. + ..-..++++||++.+....  +.+...    ++.....+..+|......   
T Consensus       318 ~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~---  394 (878)
T 3s1s_A          318 PLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP---  394 (878)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG---
T ss_pred             cCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc---
Confidence            3456789999999999999887653 2 2123578999999988776  332111    000011222334333211   


Q ss_pred             HHhhhccCCccEEEecCCCC
Q 005421          632 ESLIHKLGSIDFVICQNSVP  651 (697)
Q Consensus       632 ~~l~~~~g~~DLVIGGpPCQ  651 (697)
                          ...+.||+|||=||=-
T Consensus       395 ----~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          395 ----EDFANVSVVVMNPPYV  410 (878)
T ss_dssp             ----GGGTTEEEEEECCBCC
T ss_pred             ----cccCCCCEEEECCCcc
Confidence                1236899999999973

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.92  E-value=0.066  Score=42.79  Aligned_cols=40  Identities=25%  Similarity=0.131  Sum_probs=33.9

Q ss_pred             hHHHHHHHHhcCCChHH-HHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNE-VDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eee-v~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      +.+++..|+.|||+.+. +.+|+.+++-+  ++.-+++|+...
T Consensus         9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~   49 (54)
T 2dah_A            9 FQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS   49 (54)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            56789999999997765 69999999976  688899999764

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=93.92  E-value=0.062  Score=54.49  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=55.4

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc-------CCCCCccccccccc
Q 005421          553 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIEDIQA  625 (697)
Q Consensus       553 hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~-------n~~g~li~~~DI~~  625 (697)
                      .+..++...+.+.+||||-||.|++...+.+.+.  ..++++|+++......+......       +.....++.+|+.+
T Consensus        24 ~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~  101 (313)
T 3bgv_A           24 FLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK  101 (313)
T ss_dssp             HHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT
T ss_pred             HHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc
Confidence            3444444445678999999999999998887653  35789999999877776654322       11112245677766


Q ss_pred             cChhhHHHhhhccCCccEEEecC
Q 005421          626 LTTKKFESLIHKLGSIDFVICQN  648 (697)
Q Consensus       626 Lt~~~I~~l~~~~g~~DLVIGGp  648 (697)
                      +....  .+....+.+|+|+...
T Consensus       102 ~~~~~--~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A          102 ELLID--KFRDPQMCFDICSCQF  122 (313)
T ss_dssp             SCSTT--TCSSTTCCEEEEEEET
T ss_pred             cchhh--hcccCCCCEEEEEEec
Confidence            53100  0000124688888644

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=93.90  E-value=0.092  Score=40.60  Aligned_cols=38  Identities=21%  Similarity=0.124  Sum_probs=32.0

Q ss_pred             hHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF~-eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      +.+++..|+.|||+ ++.+..|+..++-+  ++.-+++|++
T Consensus         7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~   45 (46)
T 2bwb_A            7 YEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN   45 (46)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence            67789999999996 56689999999976  6777888874

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=93.89  E-value=0.078  Score=43.07  Aligned_cols=39  Identities=21%  Similarity=0.125  Sum_probs=33.6

Q ss_pred             hHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          137 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       137 ~~~~~~~lv~MGF~-eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      +.+++..|+.|||+ ++.+.+|+..++-+  ++.-+++|++.
T Consensus        17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~   56 (58)
T 1wr1_B           17 YEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG   56 (58)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            77899999999996 77889999999976  68889998864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=93.88  E-value=0.1  Score=53.50  Aligned_cols=83  Identities=20%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|++...+.+.+-+-..|+++|+++......+......+.....+..+|+.+...        ..+.+|
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence            467899999999999988887764212378999999988877776544322223345567665322        125799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+...++..+
T Consensus       147 ~Iv~~~~~~~~  157 (317)
T 1dl5_A          147 VIFVTVGVDEV  157 (317)
T ss_dssp             EEEECSBBSCC
T ss_pred             EEEEcCCHHHH
Confidence            99988887654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.87  E-value=0.11  Score=58.11  Aligned_cols=86  Identities=12%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc----CC-------------ceeeEEEeeCCHHHHHHHHHHHhhcCCCC-----Ccccc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNRRILKRWWESSGQTG-----ELVQI  620 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a----Gf-------------~~k~VvaVEid~~ar~t~~~~~~~~n~~g-----~li~~  620 (697)
                      .+.+|+|..||.|||-+.+.+.    +-             ....++++|+++.+.++.+.+..-++...     ..+..
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            3689999999999998776532    10             11258999999999887776433222221     22344


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCCcccc
Q 005421          621 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  655 (697)
Q Consensus       621 ~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~  655 (697)
                      +|.-...       ....+.||+|++-||......
T Consensus       249 gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~~  276 (541)
T 2ar0_A          249 GNTLGSD-------GENLPKAHIVATNPPFGSAAG  276 (541)
T ss_dssp             SCTTSHH-------HHTSCCEEEEEECCCCTTCSS
T ss_pred             CCCcccc-------cccccCCeEEEECCCcccccc
Confidence            4432111       012368999999999876543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=93.87  E-value=0.16  Score=49.15  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||+-||.|.+...+.+.+-.  .|+++|+++......+......+... ..++.+|+.++..        ..+.
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  114 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--------QNEE  114 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--------CTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--------CCCC
Confidence            34568999999999999999888742  57899999998887776654433222 2345678766641        1257


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      ||+|+......
T Consensus       115 fD~v~~~~~l~  125 (257)
T 3f4k_A          115 LDLIWSEGAIY  125 (257)
T ss_dssp             EEEEEEESCSC
T ss_pred             EEEEEecChHh
Confidence            99998765443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=93.79  E-value=0.082  Score=49.60  Aligned_cols=79  Identities=20%  Similarity=0.090  Sum_probs=52.3

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhH
Q 005421          552 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF  631 (697)
Q Consensus       552 ~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I  631 (697)
                      ..+..+... +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+.    .+.....+..+|+.++.    
T Consensus        36 ~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~----  103 (218)
T 3ou2_A           36 AALERLRAG-NIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT----  103 (218)
T ss_dssp             HHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC----
T ss_pred             HHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC----
Confidence            334444432 34559999999999999999998864   6889999998766654    11122334567776551    


Q ss_pred             HHhhhccCCccEEEec
Q 005421          632 ESLIHKLGSIDFVICQ  647 (697)
Q Consensus       632 ~~l~~~~g~~DLVIGG  647 (697)
                           ..+.+|+|+..
T Consensus       104 -----~~~~~D~v~~~  114 (218)
T 3ou2_A          104 -----PDRQWDAVFFA  114 (218)
T ss_dssp             -----CSSCEEEEEEE
T ss_pred             -----CCCceeEEEEe
Confidence                 12568888754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=93.72  E-value=0.096  Score=49.52  Aligned_cols=79  Identities=18%  Similarity=0.112  Sum_probs=54.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+|||+-||.|.+...+.+.+-+-..|+++|+++......+......+.....+..+|+.++..        ..+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f  107 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV  107 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence            3467899999999999999988762212478999999988877776544332223345677766531        12569


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+...
T Consensus       108 D~v~~~~  114 (219)
T 3dh0_A          108 DFIFMAF  114 (219)
T ss_dssp             EEEEEES
T ss_pred             eEEEeeh
Confidence            9998653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=93.70  E-value=0.11  Score=49.59  Aligned_cols=83  Identities=18%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|||+-||.|+.++.+.++   |.   .|+++|+++......+.++...+... ..++.+|+.+.    +..+....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~  130 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK  130 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence            3578999999999999998876   54   47899999998888888776543322 22445666532    22222121


Q ss_pred             -CCccEEEecCCCCc
Q 005421          639 -GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 -g~~DLVIGGpPCQ~  652 (697)
                       +.||+|+-..+|..
T Consensus       131 ~~~fD~v~~d~~~~~  145 (223)
T 3duw_A          131 YEPFDFIFIDADKQN  145 (223)
T ss_dssp             CCCCSEEEECSCGGG
T ss_pred             CCCcCEEEEcCCcHH
Confidence             57999998877765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=93.65  E-value=0.12  Score=51.58  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+.||.|.+++.+.+. |-. ..|+++|+++.+....+.+....+. ....+..+|+.+.-         ..+.
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  181 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD  181 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence            4568999999999999988876 421 2478999999998888776543321 11123445665431         1146


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      +|+|+-.+|+.
T Consensus       182 ~D~V~~~~~~~  192 (277)
T 1o54_A          182 VDALFLDVPDP  192 (277)
T ss_dssp             EEEEEECCSCG
T ss_pred             cCEEEECCcCH
Confidence            99999988876

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=93.65  E-value=0.11  Score=48.80  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=50.2

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+|||+.||.|.+.+.+...  +.   .++++|+++.+....+.+....+.....+..+|+.++..         .+.+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  133 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF  133 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence            568999999999999888875  43   478999999988887776544322223345567765431         2479


Q ss_pred             cEEEe
Q 005421          642 DFVIC  646 (697)
Q Consensus       642 DLVIG  646 (697)
                      |+|+.
T Consensus       134 D~i~~  138 (207)
T 1jsx_A          134 DGVIS  138 (207)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            99984

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=93.55  E-value=0.057  Score=52.99  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=35.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aG-f~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+.+|||++||.|.+.+.+.+.- ..-..|+++|+++.+....+.+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~   97 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence            45789999999999998887650 11235789999999887776543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=93.51  E-value=0.1  Score=51.77  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      -+.+.+|||+-||.|.+...|.+.|.+   |+++|+++......+......+. ....++.+|+.++..     +  ..+
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~  135 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-----H--LET  135 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-----G--CSS
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-----h--cCC
Confidence            345689999999999999999999874   68899999988877765543221 112245667766542     0  125


Q ss_pred             CccEEEecCC
Q 005421          640 SIDFVICQNS  649 (697)
Q Consensus       640 ~~DLVIGGpP  649 (697)
                      .||+|+....
T Consensus       136 ~fD~v~~~~~  145 (285)
T 4htf_A          136 PVDLILFHAV  145 (285)
T ss_dssp             CEEEEEEESC
T ss_pred             CceEEEECch
Confidence            7999996543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=93.46  E-value=0.15  Score=51.01  Aligned_cols=76  Identities=17%  Similarity=0.075  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhc-CCCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~-n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      ..+.+|||+.||.|+++..+.+.   +.   .|+++|+++......+.+.... +.....+..+|+.+.-         .
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------~  176 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------S  176 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------C
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------c
Confidence            34678999999999999998876   44   4789999999888777765432 2112224456665421         1


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.+|+|+.-.|
T Consensus       177 ~~~fD~Vi~~~~  188 (275)
T 1yb2_A          177 DQMYDAVIADIP  188 (275)
T ss_dssp             SCCEEEEEECCS
T ss_pred             CCCccEEEEcCc
Confidence            146999998655

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=93.44  E-value=0.081  Score=50.94  Aligned_cols=73  Identities=16%  Similarity=0.028  Sum_probs=50.9

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      .+|||+-||.|.+...|.+.|..   |+++|+++.+....+......+.. ...+..+|+.++...         +.||+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~  135 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL  135 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence            48999999999999999887753   789999999888777654321110 122456777665421         36899


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+....
T Consensus       136 v~~~~~  141 (235)
T 3lcc_A          136 IFDYVF  141 (235)
T ss_dssp             EEEESS
T ss_pred             EEEChh
Confidence            886543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.44  E-value=0.17  Score=48.76  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++......+.+....+. ....+..+|+.+...        ..+.+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~  159 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF  159 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence            457899999999999998888754   478999999988877776543321 112234566654320        11479


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+-.+|
T Consensus       160 D~v~~~~~  167 (248)
T 2yvl_A          160 HAAFVDVR  167 (248)
T ss_dssp             SEEEECSS
T ss_pred             cEEEECCc
Confidence            99998666

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.40  E-value=0.083  Score=44.99  Aligned_cols=40  Identities=15%  Similarity=0.151  Sum_probs=34.5

Q ss_pred             hHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~-eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      +.+++..|+.|||. ++.+.+|+..++-+  ++.-+++|+..+
T Consensus        29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~   69 (74)
T 1vej_A           29 YQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS   69 (74)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence            67789999999994 78889999999866  688899999754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.39  E-value=0.097  Score=53.59  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=37.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      .+-+|||+|||.|...+++.++|.+   +++||+++.+..+.+.....
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence            3557999999999999999999963   68999999988877765543

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=93.36  E-value=0.13  Score=41.12  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=24.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421          139 EKRASLLMMNFSVNEVDFALDKLGKD  164 (697)
Q Consensus       139 ~~~~~lv~MGF~eeev~~AI~~~G~d  164 (697)
                      +.+..|++|||+.++|.+|+...+.+
T Consensus        13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nn   38 (52)
T 2ooa_A           13 AKIAKLMGEGYAFEEVKRALEIAQNN   38 (52)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence            57999999999999999999999887

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=93.29  E-value=0.09  Score=42.02  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      -|.++++|||+++-|.+|++.-.. |++.--.+||.+
T Consensus        14 ~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef   49 (52)
T 2ooa_A           14 KIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF   49 (52)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence            489999999999999999998876 888777777765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=93.23  E-value=0.19  Score=48.77  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~-n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+.||.|.++..+.++ |-. ..|+++|+++......+.+.... +.....+..+|+.+..   +     ..+.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~-----~~~~  166 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---L-----EEAA  166 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---C-----CTTC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---C-----CCCC
Confidence            4678999999999999998887 311 24789999999888887765433 2122224556776542   1     1147


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      +|+|+-.+|+.
T Consensus       167 ~D~v~~~~~~~  177 (258)
T 2pwy_A          167 YDGVALDLMEP  177 (258)
T ss_dssp             EEEEEEESSCG
T ss_pred             cCEEEECCcCH
Confidence            99999877655

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=93.23  E-value=0.067  Score=54.35  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-----------CCCCccccccccccChhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK  630 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-----------~~g~li~~~DI~~Lt~~~  630 (697)
                      +.+.+||+|.||.|++...+.+.|.  ..|++||+|+......+.++ ..+           .+...++.+|..+.    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~----  146 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF----  146 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence            3567899999999999998887753  46889999999998888876 321           11122344554321    


Q ss_pred             HHHhhhccCCccEEEecCCC
Q 005421          631 FESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       631 I~~l~~~~g~~DLVIGGpPC  650 (697)
                      +.   . .+.+|+|+.-+|+
T Consensus       147 l~---~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          147 IK---N-NRGFDVIIADSTD  162 (281)
T ss_dssp             HH---H-CCCEEEEEEECCC
T ss_pred             hc---c-cCCeeEEEECCCC
Confidence            11   1 3579999988876

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=93.22  E-value=0.065  Score=54.34  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCH-------HHHHHHHHHHhhcCCCC-CccccccccccChhhHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL  634 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~-------~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l  634 (697)
                      .+.+|||++||.|.+++.|-+.|.+   |+++|+++       .+....+.+....+... ..++.+|+.++.    ..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~  155 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL  155 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence            3568999999999999999888853   78999999       66555443221110001 123445554321    111


Q ss_pred             hhccCCccEEEecCCC
Q 005421          635 IHKLGSIDFVICQNSV  650 (697)
Q Consensus       635 ~~~~g~~DLVIGGpPC  650 (697)
                      ....+.||+|+--||=
T Consensus       156 ~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             hccCCCccEEEECCCC
Confidence            1001479999976653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=93.21  E-value=0.19  Score=49.36  Aligned_cols=81  Identities=21%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ++.+.+|||+-||.|.+...+.+.+-. ..|+++|+++......+......+.....+...|+.++..        ..+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence            356789999999999999999888311 2478999999888777766543322223345667766542        1257


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      +|+|+.....
T Consensus       106 fD~v~~~~~l  115 (276)
T 3mgg_A          106 FDHIFVCFVL  115 (276)
T ss_dssp             EEEEEEESCG
T ss_pred             eeEEEEechh
Confidence            9999976543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=93.19  E-value=0.15  Score=51.77  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=52.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+.||.|++...+.+. |.+   |+++|+++......+......+.. ...++.+|+.++.-        ..+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~  184 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF--------DKG  184 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC--------CCC
Confidence            35678999999999999998877 753   789999999887777655433222 12345678776541        125


Q ss_pred             CccEEEe
Q 005421          640 SIDFVIC  646 (697)
Q Consensus       640 ~~DLVIG  646 (697)
                      .||+|+.
T Consensus       185 ~fD~V~~  191 (312)
T 3vc1_A          185 AVTASWN  191 (312)
T ss_dssp             CEEEEEE
T ss_pred             CEeEEEE
Confidence            7898885

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=93.19  E-value=0.14  Score=49.66  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...+...|.   .|+++|+++......+......+.....+..+|+.++..        ..+.||
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD   89 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD   89 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcEE
Confidence            467899999999999999988874   478999999888777765543322223345677766531        125799


Q ss_pred             EEEecCCC
Q 005421          643 FVICQNSV  650 (697)
Q Consensus       643 LVIGGpPC  650 (697)
                      +|+.....
T Consensus        90 ~v~~~~~l   97 (239)
T 1xxl_A           90 IITCRYAA   97 (239)
T ss_dssp             EEEEESCG
T ss_pred             EEEECCch
Confidence            99876443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=93.19  E-value=0.13  Score=48.07  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.+|||+-||.|.+...|.+.|.+   ++++|+++......+...     +...++.+|+.++..        .-+.+|+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~  105 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG  105 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence            678999999999999999999874   688999999877776532     223355677766531        1257999


Q ss_pred             EEecC
Q 005421          644 VICQN  648 (697)
Q Consensus       644 VIGGp  648 (697)
                      |+...
T Consensus       106 v~~~~  110 (203)
T 3h2b_A          106 LLAWY  110 (203)
T ss_dssp             EEEES
T ss_pred             EEehh
Confidence            98643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=93.18  E-value=0.15  Score=48.85  Aligned_cols=75  Identities=20%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc------------CCCCCccccccccccChh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK  629 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~------------n~~g~li~~~DI~~Lt~~  629 (697)
                      +.+.+|||+=||.|....-|.+.|++   |++||+++.+....+......            ......++.+|+.++...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            45679999999999999999999974   789999999988776532110            012233567888887643


Q ss_pred             hHHHhhhccCCccEEEe
Q 005421          630 KFESLIHKLGSIDFVIC  646 (697)
Q Consensus       630 ~I~~l~~~~g~~DLVIG  646 (697)
                      ..       +.||+|+.
T Consensus        98 ~~-------~~fD~v~~  107 (203)
T 1pjz_A           98 DI-------GHCAAFYD  107 (203)
T ss_dssp             HH-------HSEEEEEE
T ss_pred             cC-------CCEEEEEE
Confidence            21       36899884

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=93.09  E-value=0.36  Score=46.55  Aligned_cols=80  Identities=19%  Similarity=0.108  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+||||-||.|.+.+.+.+.  +.   .+++||+++.+....+......+.....++.+|+.++.     ..+ ..+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~  108 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGE  108 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTS
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCC
Confidence            3567999999999999998876  43   47899999998877766544332222335567777542     111 1256


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      +|.|+-.+|+.
T Consensus       109 ~d~v~~~~~~p  119 (213)
T 2fca_A          109 VKRVYLNFSDP  119 (213)
T ss_dssp             CCEEEEESCCC
T ss_pred             cCEEEEECCCC
Confidence            89888766653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=93.09  E-value=0.13  Score=49.22  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|.+...+.+.  |.   .++++|+++......+.......  ...++.+|+.++...         +
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~  108 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E  108 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence            45689999999999999999888  54   47899999998877776543221  223456777766421         5


Q ss_pred             CccEEEecCCCCc
Q 005421          640 SIDFVICQNSVPQ  652 (697)
Q Consensus       640 ~~DLVIGGpPCQ~  652 (697)
                      .+|+|+......-
T Consensus       109 ~fD~v~~~~~l~~  121 (234)
T 3dtn_A          109 KYDMVVSALSIHH  121 (234)
T ss_dssp             CEEEEEEESCGGG
T ss_pred             CceEEEEeCcccc
Confidence            7999997754443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=93.01  E-value=0.2  Score=45.47  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.+...+.+.. +-..|+++|+++......+.+....+....+++.+|..+    .+.   ...+.+|
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence            45789999999999999887762 113478999999988877766544322212233444422    111   1116799


Q ss_pred             EEEecCCCCc
Q 005421          643 FVICQNSVPQ  652 (697)
Q Consensus       643 LVIGGpPCQ~  652 (697)
                      +|+-+.+...
T Consensus        97 ~i~~~~~~~~  106 (178)
T 3hm2_A           97 VIFIGGGLTA  106 (178)
T ss_dssp             EEEECC-TTC
T ss_pred             EEEECCcccH
Confidence            9997665543

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=93.01  E-value=0.57  Score=49.75  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=22.8

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCC
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQD   78 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~   78 (697)
                      .+++..|.+|||+++-|.++|..+-.-
T Consensus        47 e~~l~~L~d~Gfs~~~i~~il~~~P~i   73 (335)
T 4fp9_B           47 ERVMSSLLDMGFSNAHINELLSVRRGA   73 (335)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHhCccc
Confidence            447888999999999999999887654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=92.97  E-value=0.17  Score=48.93  Aligned_cols=77  Identities=16%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+.+|||+-||.|.++..+.+.|.   .|+++|+++......+... ........+..+|+.++.-        ..+.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence            34567999999999999999998885   3789999999887777643 1112223345677765531        1256


Q ss_pred             ccEEEecCC
Q 005421          641 IDFVICQNS  649 (697)
Q Consensus       641 ~DLVIGGpP  649 (697)
                      ||+|+....
T Consensus       105 fD~v~~~~~  113 (263)
T 2yqz_A          105 VHGVIVVHL  113 (263)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEECCc
Confidence            999987543

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=92.93  E-value=0.047  Score=42.38  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      .|..++.|||++..|.+|+...| .|.+.=++.|++
T Consensus         7 aI~rL~~mGF~~~~a~~Al~a~~-~n~e~A~~~Lf~   41 (47)
T 1dv0_A            7 AIERLKALGFPESLVIQAYFACE-KNENLAANFLLS   41 (47)
T ss_dssp             HHTTTTTTTCCHHHHHHHHTTTT-SCHHHHHHHTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence            58899999999999999999999 699999999975

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=92.86  E-value=0.097  Score=51.11  Aligned_cols=80  Identities=13%  Similarity=0.050  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+++.+..+.-. ..|++||+++.+....+......+.....++.+|+.++...     ....+.||
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~fD  143 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESYD  143 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCcc
Confidence            4678999999999888887743211 24789999998888877765543322233455666554310     00125799


Q ss_pred             EEEecC
Q 005421          643 FVICQN  648 (697)
Q Consensus       643 LVIGGp  648 (697)
                      +|+...
T Consensus       144 ~V~~~~  149 (240)
T 1xdz_A          144 IVTARA  149 (240)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=92.85  E-value=0.15  Score=58.97  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcC------Cc-----------------------------------eeeEEEeeCCHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR  601 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aG------f~-----------------------------------~k~VvaVEid~~ar  601 (697)
                      .+-++||+|||.|++.+.+-..+      +.                                   -..++++|+|+.+.
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            45679999999999976554332      10                                   02478999999999


Q ss_pred             HHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421          602 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       602 ~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC  650 (697)
                      ++-+.+....+-.. ..+..+|+.++....      ..+.+|+||.-||=
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY  313 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence            88887765443222 224567776654210      11379999998883

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=92.76  E-value=0.12  Score=49.26  Aligned_cols=78  Identities=13%  Similarity=0.051  Sum_probs=52.6

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH
Q 005421          553 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE  632 (697)
Q Consensus       553 hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~  632 (697)
                      .+..+.... .+.+|||+=||.|.+...|.+.|.+   |+++|+++......+..+..    ...++.+|+.++..    
T Consensus        33 ~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~----  100 (250)
T 2p7i_A           33 MVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL----  100 (250)
T ss_dssp             HHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC----
T ss_pred             HHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc----
Confidence            344444433 4568999999999999999888863   68899999988777764321    22245567665521    


Q ss_pred             HhhhccCCccEEEec
Q 005421          633 SLIHKLGSIDFVICQ  647 (697)
Q Consensus       633 ~l~~~~g~~DLVIGG  647 (697)
                           .+.||+|+..
T Consensus       101 -----~~~fD~v~~~  110 (250)
T 2p7i_A          101 -----PRRYDNIVLT  110 (250)
T ss_dssp             -----SSCEEEEEEE
T ss_pred             -----CCcccEEEEh
Confidence                 1457777754

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=92.75  E-value=0.26  Score=46.77  Aligned_cols=77  Identities=8%  Similarity=0.031  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-----CCccccccccccChhhHHHhhhc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-----g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      .+.+|||+-||.|.+...+.+.|-. ..++++|+++.+....+......+..     ...+..+|+..+..        .
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~   99 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R   99 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence            3568999999999999999987732 35789999999988887765422111     12244566643331        1


Q ss_pred             cCCccEEEecC
Q 005421          638 LGSIDFVICQN  648 (697)
Q Consensus       638 ~g~~DLVIGGp  648 (697)
                      .+.+|+|+...
T Consensus       100 ~~~fD~v~~~~  110 (217)
T 3jwh_A          100 FHGYDAATVIE  110 (217)
T ss_dssp             GCSCSEEEEES
T ss_pred             CCCcCEEeeHH
Confidence            25788888544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=92.74  E-value=0.093  Score=49.65  Aligned_cols=71  Identities=11%  Similarity=-0.020  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...|.+.|.   .|+++|+++.+....+......  ....++.+|+.++..         .+.+|
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD  116 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD  116 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence            357899999999999999998874   4789999999888777654321  122355678876651         25799


Q ss_pred             EEEec
Q 005421          643 FVICQ  647 (697)
Q Consensus       643 LVIGG  647 (697)
                      +|+..
T Consensus       117 ~v~~~  121 (216)
T 3ofk_A          117 LIVVA  121 (216)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99975

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=92.74  E-value=0.16  Score=51.01  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh-----------------cCCCCCccccccccc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA  625 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~-----------------~n~~g~li~~~DI~~  625 (697)
                      .+.+|||+=||.|....-|.+.|+.   |++||+++.+....+.....                 .......++.+|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4678999999999999999999984   78999999998776542210                 001122345678877


Q ss_pred             cChhhHHHhhhccCCccEEEe
Q 005421          626 LTTKKFESLIHKLGSIDFVIC  646 (697)
Q Consensus       626 Lt~~~I~~l~~~~g~~DLVIG  646 (697)
                      +...       ..+.||+|+.
T Consensus       145 l~~~-------~~~~FD~V~~  158 (252)
T 2gb4_A          145 LPRA-------NIGKFDRIWD  158 (252)
T ss_dssp             GGGG-------CCCCEEEEEE
T ss_pred             CCcc-------cCCCEEEEEE
Confidence            6532       1257999984

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=92.69  E-value=0.29  Score=49.37  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeC-CHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEi-d~~ar~t~~~~~  608 (697)
                      .+.+||||.||.|.+++.+.+.|.  ..|+++|+ ++.+....+.+.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence            456899999999999999999985  35889999 899888877765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=92.59  E-value=0.14  Score=52.32  Aligned_cols=80  Identities=15%  Similarity=0.075  Sum_probs=54.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+||||-||.|.+++.|.+.|.+   |+++|+++......+.....     . .+..|+.+++.+....   ..+.|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~-----~-~v~~~~~~~~~~~~~~---~~~~f  111 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALAD-----R-CVTIDLLDITAEIPKE---LAGHF  111 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSS-----S-CCEEEECCTTSCCCGG---GTTCC
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHh-----c-cceeeeeecccccccc---cCCCc
Confidence            34678999999999999999999964   78999999998887764321     1 2345555554310000   12579


Q ss_pred             cEEEecCCCCcc
Q 005421          642 DFVICQNSVPQI  653 (697)
Q Consensus       642 DLVIGGpPCQ~F  653 (697)
                      |+|+.....+.|
T Consensus       112 D~Vv~~~~l~~~  123 (261)
T 3iv6_A          112 DFVLNDRLINRF  123 (261)
T ss_dssp             SEEEEESCGGGS
T ss_pred             cEEEEhhhhHhC
Confidence            999976654443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=92.53  E-value=0.21  Score=48.68  Aligned_cols=83  Identities=13%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|..++.+.+++- -..|+++|+++......+.++...+.. ...++.+|+.+.-..   .+   .+.|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence            356899999999999999988432 235789999999988888877654332 223456777654220   11   2579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+|+-..++..
T Consensus       144 D~V~~~~~~~~  154 (232)
T 3ntv_A          144 DMIFIDAAKAQ  154 (232)
T ss_dssp             EEEEEETTSSS
T ss_pred             cEEEEcCcHHH
Confidence            99997777665

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=92.52  E-value=0.088  Score=51.01  Aligned_cols=75  Identities=20%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...|.+.+.  ..|+++|+++......+......+.....++..|+.++..        ..+.||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD  148 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD  148 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence            467999999999999998877763  3578999999988887765433211111234566655432        124699


Q ss_pred             EEEec
Q 005421          643 FVICQ  647 (697)
Q Consensus       643 LVIGG  647 (697)
                      +|+..
T Consensus       149 ~v~~~  153 (241)
T 2ex4_A          149 VIWIQ  153 (241)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99854

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=92.48  E-value=0.11  Score=40.25  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      -+..+++|||+ +..+.+|++..+. |++.-+|+|+.
T Consensus        10 ~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~   45 (46)
T 2bwb_A           10 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN   45 (46)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence            47899999996 6789999999985 99999999984

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=92.46  E-value=0.12  Score=53.02  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      +.+.+||+|.||.|++...+.+. |.  ..|++||+|+......+.++...    +.+...++.+|+.+.-.       .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence            34578999999999999888776 43  45789999999988888776421    11222344566543211       1


Q ss_pred             ccCCccEEEecCCCC
Q 005421          637 KLGSIDFVICQNSVP  651 (697)
Q Consensus       637 ~~g~~DLVIGGpPCQ  651 (697)
                      ..+.+|+|+..+||.
T Consensus       160 ~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          160 FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             CSSCEEEEEEEC---
T ss_pred             CCCCceEEEEcCCCc
Confidence            125799999888764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=92.46  E-value=0.25  Score=46.73  Aligned_cols=83  Identities=19%  Similarity=0.135  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...+.+.+-+-..|+++|+++......+......+.....+..+|+...-.        ..+.+|
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD  148 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence            467899999999999988877652112478999999988777766543322222234456532111        125799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+...++..+
T Consensus       149 ~v~~~~~~~~~  159 (215)
T 2yxe_A          149 RIYTTAAGPKI  159 (215)
T ss_dssp             EEEESSBBSSC
T ss_pred             EEEECCchHHH
Confidence            99988776644

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=92.42  E-value=0.17  Score=50.89  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC---CCCccccccccccChhhHHHhhhccCCc
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~---~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      -+||||-||.|.+...|.+.|..   |+++|+++......+......+.   ....++.+|+.++..         .+.|
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~f  151 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKRF  151 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCCE
T ss_pred             CcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCCc
Confidence            48999999999999999999864   68999999988877765543210   122356678877642         2578


Q ss_pred             cEEEe
Q 005421          642 DFVIC  646 (697)
Q Consensus       642 DLVIG  646 (697)
                      |+|+.
T Consensus       152 D~v~~  156 (299)
T 3g2m_A          152 GTVVI  156 (299)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            97773

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=92.41  E-value=0.25  Score=49.63  Aligned_cols=73  Identities=18%  Similarity=0.233  Sum_probs=52.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++           .+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~  136 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE  136 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence            34678999999999999998877 84   3789999999888777765543322 122456777655           15


Q ss_pred             CccEEEecC
Q 005421          640 SIDFVICQN  648 (697)
Q Consensus       640 ~~DLVIGGp  648 (697)
                      .+|+|+...
T Consensus       137 ~fD~v~~~~  145 (302)
T 3hem_A          137 PVDRIVSLG  145 (302)
T ss_dssp             CCSEEEEES
T ss_pred             CccEEEEcc
Confidence            789988653

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.40  E-value=0.2  Score=40.24  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=24.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421          139 EKRASLLMMNFSVNEVDFALDKLGKD  164 (697)
Q Consensus       139 ~~~~~lv~MGF~eeev~~AI~~~G~d  164 (697)
                      ..|..|++|||+.++|.+|+...+.+
T Consensus        11 ~~I~~L~~lGF~r~~ai~AL~~a~nn   36 (53)
T 2d9s_A           11 SEIERLMSQGYSYQDIQKALVIAHNN   36 (53)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence            46999999999999999999999887

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=92.38  E-value=0.16  Score=49.65  Aligned_cols=83  Identities=16%  Similarity=0.108  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||||.||.|.+.+.+.+.+-. ..|++||+++.+....+.+-...+.....++.+|+.++-.    ... ..+.+|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~----~~~-~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH----KMI-PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH----HHS-CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HHc-CCCChh
Confidence            3568999999999999988876532 2478999999987776665443322223345566654311    111 236799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+--+|+.
T Consensus       108 ~v~~~~~~p  116 (218)
T 3dxy_A          108 MVQLFFPDP  116 (218)
T ss_dssp             EEEEESCCC
T ss_pred             eEEEeCCCC
Confidence            998776654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=92.37  E-value=0.27  Score=49.32  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=42.6

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421          558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  611 (697)
Q Consensus       558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~  611 (697)
                      .++.+.+-+|+|+-||.|-+++.+.+.|-. ..|+++|+++.+....+.+-...
T Consensus        10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~   62 (225)
T 3kr9_A           10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH   62 (225)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            344556789999999999999999998843 46899999999988887765443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=92.35  E-value=0.15  Score=48.79  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ++.+.+|||+-||.|.+...+.+. .   .++++|+++......+......+ ....+..+|+.++..         .+.
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~~   96 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PEP   96 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SSC
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CCC
Confidence            344578999999999998888776 3   47899999998887776654322 222345667765531         146


Q ss_pred             ccEEEec
Q 005421          641 IDFVICQ  647 (697)
Q Consensus       641 ~DLVIGG  647 (697)
                      +|+|+..
T Consensus        97 fD~v~~~  103 (243)
T 3d2l_A           97 VDAITIL  103 (243)
T ss_dssp             EEEEEEC
T ss_pred             cCEEEEe
Confidence            8888853

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=92.34  E-value=0.16  Score=50.05  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||+-||.|++...+.+.|.  ..++++|+++......+......+.. ...++.+|+.++.-.       ..+.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~  133 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGKE  133 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSSC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCCC
Confidence            4578999999999999999988885  24789999999888877765432211 122455677655310       1246


Q ss_pred             ccEEEecC
Q 005421          641 IDFVICQN  648 (697)
Q Consensus       641 ~DLVIGGp  648 (697)
                      +|+|+...
T Consensus       134 fD~v~~~~  141 (298)
T 1ri5_A          134 FDVISSQF  141 (298)
T ss_dssp             EEEEEEES
T ss_pred             cCEEEECc
Confidence            88888654

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.30  E-value=0.16  Score=43.20  Aligned_cols=36  Identities=11%  Similarity=0.186  Sum_probs=32.1

Q ss_pred             hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      -+..+++||| .++.|.+|++..+. |++.-+|+|+..
T Consensus        32 qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~   68 (74)
T 1vej_A           32 ELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGA   68 (74)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence            5789999999 58999999999885 999999999973

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=92.23  E-value=0.24  Score=48.40  Aligned_cols=91  Identities=14%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             cccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccccccccc
Q 005421          547 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL  626 (697)
Q Consensus       547 vdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~L  626 (697)
                      ...+..++..+..  ..+.+|||+-||.|.+...|.+.+.   .|+++|+++......+......+.+...+..+|+.++
T Consensus        23 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l   97 (260)
T 1vl5_A           23 GSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM   97 (260)
T ss_dssp             CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC
T ss_pred             HHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC
Confidence            3444444444432  2467899999999999999988874   4789999998887777655433222233556787765


Q ss_pred             ChhhHHHhhhccCCccEEEecCCC
Q 005421          627 TTKKFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       627 t~~~I~~l~~~~g~~DLVIGGpPC  650 (697)
                      .-        .-+.||+|+.....
T Consensus        98 ~~--------~~~~fD~V~~~~~l  113 (260)
T 1vl5_A           98 PF--------TDERFHIVTCRIAA  113 (260)
T ss_dssp             CS--------CTTCEEEEEEESCG
T ss_pred             CC--------CCCCEEEEEEhhhh
Confidence            41        11579999866443

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=92.22  E-value=0.28  Score=46.67  Aligned_cols=81  Identities=14%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL-  638 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~-  638 (697)
                      +.+|||+-||.|+.++.+.+.   +.   .|+++|+++......+.++...+... ..++.+|+.+.    +..+.... 
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~  137 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ  137 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence            468999999999999998875   43   47899999998888888776543322 22345665432    11111111 


Q ss_pred             -CCccEEEecCCCC
Q 005421          639 -GSIDFVICQNSVP  651 (697)
Q Consensus       639 -g~~DLVIGGpPCQ  651 (697)
                       +.||+|+--++..
T Consensus       138 ~~~fD~v~~~~~~~  151 (225)
T 3tr6_A          138 AWQYDLIYIDADKA  151 (225)
T ss_dssp             TTCEEEEEECSCGG
T ss_pred             CCCccEEEECCCHH
Confidence             6899999665543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=92.19  E-value=0.38  Score=46.03  Aligned_cols=79  Identities=15%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+.||.|.++..+.+. |-. ..|+++|+++.+.+..+..-.. + ....++.+|+.+...  +.   ...+.+
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~  144 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE-R-RNIVPILGDATKPEE--YR---ALVPKV  144 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS-C-TTEEEEECCTTCGGG--GT---TTCCCE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhc-c-CCCEEEEccCCCcch--hh---cccCCc
Confidence            4678999999999999988755 421 2478999999776655543321 1 223345677765321  00   112479


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+...|
T Consensus       145 D~v~~~~~  152 (227)
T 1g8a_A          145 DVIFEDVA  152 (227)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCC
Confidence            99997766

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=92.12  E-value=0.23  Score=47.91  Aligned_cols=73  Identities=8%  Similarity=-0.011  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~-~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||+-||.|.+...+.+.|.   .|+++|+++......+..     .+...++.+|+. .+..       ...+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~-------~~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPA-------GLGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCT-------TCCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCC-------cCCCC
Confidence            4568899999999999999999886   378999999988777653     223335667874 3321       00257


Q ss_pred             ccEEEecCC
Q 005421          641 IDFVICQNS  649 (697)
Q Consensus       641 ~DLVIGGpP  649 (697)
                      ||+|+..+.
T Consensus       112 fD~v~~~~~  120 (226)
T 3m33_A          112 FGLIVSRRG  120 (226)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEeCCC
Confidence            999997643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=92.10  E-value=0.25  Score=52.23  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||.||.|.+++.+.++|.  +.|++||++ ......+......+... ..++.+|+.++...         +.+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~  130 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV  130 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence            457899999999999999999996  358899999 55555555443322222 23556788776521         579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+..+
T Consensus       131 D~Iv~~~  137 (376)
T 3r0q_C          131 DVIISEW  137 (376)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999744

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=92.09  E-value=0.32  Score=46.12  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .+.+|||+-||.|.+...+.+.|-. ..++++|+++.+....+....
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            3568999999999999999987732 357899999999888877553

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.09  E-value=0.085  Score=42.52  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=34.5

Q ss_pred             hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      ...+|.+||| ..++-.+|++.+|. |.+..++.||+...
T Consensus        12 ~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~   50 (54)
T 2cp8_A           12 LMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSG   50 (54)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSS
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccC
Confidence            5789999999 99999999999988 99999999998653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=92.08  E-value=0.16  Score=51.54  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      +++-+||+|.||.|++...+.+. |.  ..|.+||+|+...+..+.++...    +.+...++.+|..+.    +.   .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence            45678999999999998888776 53  45889999999999888876431    112223455665431    11   1


Q ss_pred             ccCCccEEEecCCC
Q 005421          637 KLGSIDFVICQNSV  650 (697)
Q Consensus       637 ~~g~~DLVIGGpPC  650 (697)
                      ..+.+|+|+-.+|.
T Consensus       145 ~~~~fD~Ii~d~~~  158 (275)
T 1iy9_A          145 SENQYDVIMVDSTE  158 (275)
T ss_dssp             CCSCEEEEEESCSS
T ss_pred             CCCCeeEEEECCCC
Confidence            12579999987764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=92.02  E-value=0.29  Score=47.40  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+.||.|.+...+.+.+-  ..|+++|+++......+......+.....+..+|+. ..   +.    ..+.+|
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD  160 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD  160 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence            456899999999999988877652  247899999998877776654332222223445551 11   11    124599


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|+...++..+
T Consensus       161 ~Ii~~~~~~~~  171 (235)
T 1jg1_A          161 VIIVTAGAPKI  171 (235)
T ss_dssp             EEEECSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99987766544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=92.02  E-value=0.16  Score=50.71  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=51.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+|||+-||.|...+.+..+.=. ..|+++|+++.+....+.+....+.....++.+|+.++....     ...+.|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence            45678999999999888877765211 247899999999888887655443222234556665443210     012579


Q ss_pred             cEEEe
Q 005421          642 DFVIC  646 (697)
Q Consensus       642 DLVIG  646 (697)
                      |+|+.
T Consensus       153 D~I~s  157 (249)
T 3g89_A          153 ARAVA  157 (249)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99985

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=92.01  E-value=0.3  Score=46.16  Aligned_cols=72  Identities=22%  Similarity=0.153  Sum_probs=53.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...+.+.|..   ++++|+++......+....    ....+..+|+.++...         +.+|
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD  108 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID  108 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence            4678999999999999999998864   6889999998777765422    1233556788776421         5799


Q ss_pred             EEEecCCC
Q 005421          643 FVICQNSV  650 (697)
Q Consensus       643 LVIGGpPC  650 (697)
                      +|+.....
T Consensus       109 ~v~~~~~l  116 (220)
T 3hnr_A          109 TIVSTYAF  116 (220)
T ss_dssp             EEEEESCG
T ss_pred             EEEECcch
Confidence            99876543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=91.91  E-value=0.31  Score=47.22  Aligned_cols=77  Identities=13%  Similarity=0.063  Sum_probs=49.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||-||.|.+...|.+. | . ..|+++|+++.+.+..+..... + ....++.+|+.+...     .....+.+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~-~-~~v~~~~~d~~~~~~-----~~~~~~~~  144 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAE-R-ENIIPILGDANKPQE-----YANIVEKV  144 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTT-C-TTEEEEECCTTCGGG-----GTTTSCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhc-C-CCeEEEECCCCCccc-----ccccCccE
Confidence            4678999999999999888765 5 2 3578999999987776654321 1 222244567765211     00011579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+...
T Consensus       145 D~v~~~~  151 (230)
T 1fbn_A          145 DVIYEDV  151 (230)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            9999543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=91.85  E-value=0.17  Score=48.98  Aligned_cols=75  Identities=17%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...|.+.+.  ..|+++|+++......+.+....+ ....++.+|+.++..    .+  .-+.||
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~----~~--~~~~fD  130 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP----TL--PDGHFD  130 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----GS--CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----cc--CCCceE
Confidence            467899999999999999977775  357899999999888877543321 222234566654311    00  125799


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       131 ~V~~  134 (236)
T 1zx0_A          131 GILY  134 (236)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=91.83  E-value=0.2  Score=48.20  Aligned_cols=91  Identities=18%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHH-cCC-----ceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCcccccc
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIED  622 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~-aGf-----~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~D  622 (697)
                      +..|......+.+|||+-||.|.++..+.+ .|.     . ..|+++|+++......+......+     .....+..+|
T Consensus        75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  153 (227)
T 1r18_A           75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD  153 (227)
T ss_dssp             HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC
Confidence            344443344567999999999999888766 341     0 147899999988777666543211     1112244566


Q ss_pred             ccccChhhHHHhhhccCCccEEEecCCCCcc
Q 005421          623 IQALTTKKFESLIHKLGSIDFVICQNSVPQI  653 (697)
Q Consensus       623 I~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~F  653 (697)
                      +.+.-.        ..+.+|+|+...++..+
T Consensus       154 ~~~~~~--------~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          154 GRKGYP--------PNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             GGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred             cccCCC--------cCCCccEEEECCchHHH
Confidence            654111        12579999988887654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=91.78  E-value=0.28  Score=51.21  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|.+++.+.++|.  ..|++||+++.+ ...+......+. ....++.+|+.++..         .+.+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~  117 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  117 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence            356899999999999999998885  358899999743 444443332221 122345677776531         1479


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+...+
T Consensus       118 D~Ivs~~~  125 (348)
T 2y1w_A          118 DIIISEPM  125 (348)
T ss_dssp             EEEEECCC
T ss_pred             eEEEEeCc
Confidence            99998765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=91.75  E-value=0.32  Score=48.07  Aligned_cols=80  Identities=23%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~-n--~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|||+.||.|.++..+.++ |-. ..|+++|+++......+.+.... +  .....+..+|+.++..        ..
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~  169 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD  169 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence            4568999999999999988874 311 24789999999888777665432 1  1122245567765521        12


Q ss_pred             CCccEEEecCCCC
Q 005421          639 GSIDFVICQNSVP  651 (697)
Q Consensus       639 g~~DLVIGGpPCQ  651 (697)
                      +.+|+|+-..|..
T Consensus       170 ~~~D~v~~~~~~~  182 (280)
T 1i9g_A          170 GSVDRAVLDMLAP  182 (280)
T ss_dssp             TCEEEEEEESSCG
T ss_pred             CceeEEEECCcCH
Confidence            4799999876643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=91.70  E-value=0.2  Score=48.11  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc--
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--  637 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~--  637 (697)
                      +.+||||.||.|+.++.+.++   |.   .|+++|+++......+.++...+... ..++.+|+.++-    ..+...  
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~~  131 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKYD  131 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhcC
Confidence            468999999999999988874   43   47899999999888888766543221 223456654321    111111  


Q ss_pred             cCCccEEEecCCCCcc
Q 005421          638 LGSIDFVICQNSVPQI  653 (697)
Q Consensus       638 ~g~~DLVIGGpPCQ~F  653 (697)
                      .+.||+|+-..++..+
T Consensus       132 ~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             CCCCSEEEECSCGGGH
T ss_pred             CCceEEEEEcCCcccc
Confidence            1579999877666554

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=91.66  E-value=0.14  Score=57.66  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-G-f~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++..  ...+..+|.-..+-.     ....
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p-----~~~~  295 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWP-----TQEP  295 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSC-----CSSC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccc-----cccc
Confidence            4689999999999998776543 1 01135899999999888777643222211  112334443222100     0123


Q ss_pred             CCccEEEecCCCC
Q 005421          639 GSIDFVICQNSVP  651 (697)
Q Consensus       639 g~~DLVIGGpPCQ  651 (697)
                      +.||+|+|=||-.
T Consensus       296 ~~fD~IvaNPPf~  308 (542)
T 3lkd_A          296 TNFDGVLMNPPYS  308 (542)
T ss_dssp             CCBSEEEECCCTT
T ss_pred             ccccEEEecCCcC
Confidence            5799999999976

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=91.62  E-value=0.15  Score=48.70  Aligned_cols=73  Identities=15%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      ++.+.+.+.+|||+-||.|.+...|.+.|.   .++++|+++......+...     ....+..+|+.++..        
T Consensus        34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------   97 (239)
T 3bxo_A           34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL--------   97 (239)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC--------
T ss_pred             HHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc--------
Confidence            333335678999999999999999998875   4788999999887776532     122345667765531        


Q ss_pred             ccCCccEEEe
Q 005421          637 KLGSIDFVIC  646 (697)
Q Consensus       637 ~~g~~DLVIG  646 (697)
                       .+.+|+|+.
T Consensus        98 -~~~~D~v~~  106 (239)
T 3bxo_A           98 -GRKFSAVVS  106 (239)
T ss_dssp             -SSCEEEEEE
T ss_pred             -CCCCcEEEE
Confidence             146888873

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=91.56  E-value=0.29  Score=47.22  Aligned_cols=84  Identities=17%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|++++.+.+..= -..|+++|+++......+.++...+... ..+..+|+.+.-    .... ..+.|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f  127 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF  127 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence            356899999999999998887620 1247899999999888887765443211 223456665431    1110 12579


Q ss_pred             cEEEecCCCCc
Q 005421          642 DFVICQNSVPQ  652 (697)
Q Consensus       642 DLVIGGpPCQ~  652 (697)
                      |+|+-..||..
T Consensus       128 D~I~~~~~~~~  138 (233)
T 2gpy_A          128 DVLFIDAAKGQ  138 (233)
T ss_dssp             EEEEEEGGGSC
T ss_pred             cEEEECCCHHH
Confidence            99999888854

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=91.47  E-value=0.38  Score=49.92  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+||||.||.|.+...+.+.|-.. .|+++|+++.+....+.+....+.. ..+..+|+.+..          .+.||+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~  264 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM  264 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence            3589999999999999998887432 4689999999887777765443222 223445554321          257999


Q ss_pred             EEecCCCC
Q 005421          644 VICQNSVP  651 (697)
Q Consensus       644 VIGGpPCQ  651 (697)
                      |+..+|..
T Consensus       265 Iv~~~~~~  272 (343)
T 2pjd_A          265 IISNPPFH  272 (343)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=91.41  E-value=0.22  Score=49.16  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|||+.||.|+.++.+.++   +.   .|+++|+++......+.++...+... ..+..+|+.+.    +..+ ...
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~  134 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC  134 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence            3578999999999999998876   43   47899999999888888776543322 22345565432    1111 112


Q ss_pred             CCccEEEecCCCCc
Q 005421          639 GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 g~~DLVIGGpPCQ~  652 (697)
                      +.||+|+--.++..
T Consensus       135 ~~fD~V~~d~~~~~  148 (248)
T 3tfw_A          135 PAFDLIFIDADKPN  148 (248)
T ss_dssp             CCCSEEEECSCGGG
T ss_pred             CCeEEEEECCchHH
Confidence            47999997777654

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=91.37  E-value=0.23  Score=44.83  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             hHHHHHHHHhc-CCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          137 HIEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       137 ~~~~~~~lv~M-GF~eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      +++++..|+.| ||++++|..|+.+|+-|  ++.-+++|+..
T Consensus        39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg   78 (104)
T 1wj7_A           39 FEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEG   78 (104)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            67789999999 99999999999999988  56777887754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=91.37  E-value=0.26  Score=47.66  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+.+|||+-||.|.+...+.+. |.   .|+++|+++......+......  ....++.+|+.++..        ..+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~  120 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--------PENN  120 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--------CTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--------CCCc
Confidence            34678999999999999998876 65   4789999999887776532211  222345677766531        1257


Q ss_pred             ccEEEecC
Q 005421          641 IDFVICQN  648 (697)
Q Consensus       641 ~DLVIGGp  648 (697)
                      +|+|+...
T Consensus       121 fD~v~~~~  128 (266)
T 3ujc_A          121 FDLIYSRD  128 (266)
T ss_dssp             EEEEEEES
T ss_pred             EEEEeHHH
Confidence            89988654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=91.36  E-value=0.38  Score=48.51  Aligned_cols=52  Identities=17%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421          559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  611 (697)
Q Consensus       559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~  611 (697)
                      ++.+.+-+|+|+=||.|-+.+.+.+.|. ...|+|+|+++.+....+.+-...
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~   68 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEH   68 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            3445578899999999999999999884 346899999999988888765543

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=91.25  E-value=0.21  Score=41.77  Aligned_cols=41  Identities=17%  Similarity=0.038  Sum_probs=34.8

Q ss_pred             hHHHHHHHHhcCCChHHH-HHHHHHhCCCCchHHHHHHHHHhhh
Q 005421          137 HIEKRASLLMMNFSVNEV-DFALDKLGKDAPVYELVDFITAAQI  179 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev-~~AI~~~G~da~~~~Lld~I~a~Q~  179 (697)
                      +...+.+|..|||..... .+|+..++-+  ++.-+|+|+..+.
T Consensus        19 y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~~   60 (67)
T 2dna_A           19 FSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQG   60 (67)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            777899999999976655 9999999965  7999999998753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=91.14  E-value=0.35  Score=50.57  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|.+++.+.++|.  ..|+++|+++ .....+......+... ..++.+|+.++.-        ..+.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  134 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PVEKV  134 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SSSCE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------CCCce
Confidence            356899999999999999999986  3588999996 4444444333222222 2355678877631        12579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+.-+
T Consensus       135 D~Iis~~  141 (349)
T 3q7e_A          135 DIIISEW  141 (349)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            9999754

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=91.09  E-value=0.18  Score=40.94  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      -+..+++|||+ +..+.+|++..+. |++.-+|+|+..
T Consensus        20 qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~   56 (58)
T 1wr1_B           20 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG   56 (58)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence            47899999995 7799999999985 999999999973

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=91.08  E-value=0.33  Score=49.39  Aligned_cols=51  Identities=10%  Similarity=-0.120  Sum_probs=41.5

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      ++.+.+-+|+|+=||.|-+.+.+.+.|- ...|+++|+++.+....+.+-..
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~   67 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRS   67 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            3445578899999999999999999884 34689999999998888776543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=90.94  E-value=0.32  Score=50.72  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+||||-||.|.+++.+.++|.  ..|+++|+++ .....+......+. ....++.+|+.++..        ..+.+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~  132 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------PVEKV  132 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SCSCE
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------CCCcE
Confidence            356899999999999999999985  3588999997 55555554433222 122345677776531        12479


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+...
T Consensus       133 D~Ivs~~  139 (340)
T 2fyt_A          133 DVIISEW  139 (340)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=90.94  E-value=0.15  Score=52.32  Aligned_cols=80  Identities=10%  Similarity=-0.015  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc-CC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL-GS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~-~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~-g~  640 (697)
                      .+-+|||+-||.|.++..|.+.|-+ -..|+++|+|+.....++..+ .   ....++.+|+.++.-..+.   ... ..
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~v~~i~~D~~~~~~~~~~---~~~~~~  114 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---ELLELHAGDALTFDFGSIA---RPGDEP  114 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GGEEEEESCGGGCCGGGGS---CSSSSC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CCcEEEECChhcCChhHhc---ccccCC
Confidence            4678999999999999999887742 012789999999988887653 1   1223567899888754331   100 13


Q ss_pred             ccEEEecCC
Q 005421          641 IDFVICQNS  649 (697)
Q Consensus       641 ~DLVIGGpP  649 (697)
                      ...|||-.|
T Consensus       115 ~~~vv~NlP  123 (279)
T 3uzu_A          115 SLRIIGNLP  123 (279)
T ss_dssp             CEEEEEECC
T ss_pred             ceEEEEccC
Confidence            457777766

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=90.76  E-value=0.13  Score=51.88  Aligned_cols=76  Identities=21%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+.||.|.++..|.+.|-  ..|++||+|+.....++..    ......++.+|+.+++-..+      ++ ..
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~------~~-~~   97 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL------GK-EL   97 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS------CS-SE
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc------cC-Cc
Confidence            356899999999999999988862  3478999999988777542    11222356789988764432      12 34


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+|-+|=+
T Consensus        98 ~vv~NlPy~  106 (249)
T 3ftd_A           98 KVVGNLPYN  106 (249)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEECchh
Confidence            778877754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=90.75  E-value=0.48  Score=45.20  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...+.+.|..  .++++|+++......+.....   ....+..+|+.++..        ..+.+|
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD  109 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD  109 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence            4578999999999999999999862  478999999987777653221   122244566665431        124688


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+....
T Consensus       110 ~v~~~~~  116 (243)
T 3bkw_A          110 LAYSSLA  116 (243)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            8886543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=90.73  E-value=0.54  Score=44.83  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G  639 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~--g  639 (697)
                      .+-+|||+.||.|..++.+.++--.-..|+++|+++......+.++...+.. ...++.+|+.+.    +..+....  +
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~  144 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG  144 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence            3468999999999999988875110124789999999988888877654321 122344565432    12221111  5


Q ss_pred             CccEEEecCCCC
Q 005421          640 SIDFVICQNSVP  651 (697)
Q Consensus       640 ~~DLVIGGpPCQ  651 (697)
                      .+|+|+--+|..
T Consensus       145 ~~D~v~~d~~~~  156 (229)
T 2avd_A          145 TFDVAVVDADKE  156 (229)
T ss_dssp             CEEEEEECSCST
T ss_pred             CccEEEECCCHH
Confidence            799999877654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=90.63  E-value=0.26  Score=47.56  Aligned_cols=74  Identities=16%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...|.+.|.  ..|+++|+++......+......  ....++.+|+.++..        ..+.+|
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence            467899999999999999888874  35789999999888777654321  122244567665531        124689


Q ss_pred             EEEecC
Q 005421          643 FVICQN  648 (697)
Q Consensus       643 LVIGGp  648 (697)
                      +|+...
T Consensus       161 ~v~~~~  166 (254)
T 1xtp_A          161 LIVIQW  166 (254)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            888543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=90.62  E-value=0.5  Score=47.70  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++.           +
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  154 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E  154 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence            34678999999999999888776 86   3688999999888777655432211 1223456665542           4


Q ss_pred             CccEEEecC
Q 005421          640 SIDFVICQN  648 (697)
Q Consensus       640 ~~DLVIGGp  648 (697)
                      .||+|+...
T Consensus       155 ~fD~v~~~~  163 (318)
T 2fk8_A          155 PVDRIVSIE  163 (318)
T ss_dssp             CCSEEEEES
T ss_pred             CcCEEEEeC
Confidence            688887553

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=90.60  E-value=0.3  Score=48.01  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+....     .. +...|+.++..        ..+.|
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~~f  115 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSGAF  115 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTTCE
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCCCE
Confidence            45679999999999999999998863   6889999998877765321     12 55677776541        12579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+...
T Consensus       116 D~v~~~~  122 (260)
T 2avn_A          116 EAVLALG  122 (260)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcc
Confidence            9999644

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=90.59  E-value=0.28  Score=48.24  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      ++++++.|+.|||+++.|..|+.+++-+  ++.-+++|++
T Consensus       163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~  200 (201)
T 3k9o_A          163 YTKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS  200 (201)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence            6789999999999999999999999886  5777777764

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.54  E-value=0.36  Score=38.53  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             hhhhhccCCCChH-HHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           54 LRSSFIGMGFSPS-LVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        54 l~~~fi~MGF~~e-~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      -+..+.+|||+.+ .+.+|++..+- |++.-+|+|+...
T Consensus        12 ~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~   49 (54)
T 2dah_A           12 QLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSS   49 (54)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            4799999999665 57999999985 9999999999753

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=90.42  E-value=0.27  Score=46.20  Aligned_cols=74  Identities=23%  Similarity=0.142  Sum_probs=49.8

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc
Q 005421          558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +.+.+.+.+|||+-||.|.+...+   |+  ..++++|+++......+...     ....+..+|+.++..        .
T Consensus        31 ~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~   92 (211)
T 2gs9_A           31 KGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------P   92 (211)
T ss_dssp             HTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------C
T ss_pred             HHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------C
Confidence            333446789999999999987776   65  24789999999877766532     222345667766531        1


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.+|+|+....
T Consensus        93 ~~~fD~v~~~~~  104 (211)
T 2gs9_A           93 GESFDVVLLFTT  104 (211)
T ss_dssp             SSCEEEEEEESC
T ss_pred             CCcEEEEEEcCh
Confidence            247999986543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=90.41  E-value=0.54  Score=45.42  Aligned_cols=73  Identities=25%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|.++..+.+. |..   |+++|+++......+......+.. ...+..+|+.++..         .+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~  102 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE  102 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence            34678999999999999888765 653   689999998887777655433211 12245567765532         14


Q ss_pred             CccEEEe
Q 005421          640 SIDFVIC  646 (697)
Q Consensus       640 ~~DLVIG  646 (697)
                      .||+|+.
T Consensus       103 ~fD~V~~  109 (256)
T 1nkv_A          103 KCDVAAC  109 (256)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            6787775

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=90.36  E-value=0.59  Score=43.50  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             cccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 005421          566 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +|||+-||.|.+...+.+. |   ..++++|+++......+......+.. ...++.+|+.++.-        ..+.+|+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSD---FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSE---EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHcCC---CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence            8999999999999999887 4   34789999999888777765443322 22345677776541        1257999


Q ss_pred             EEecCCC
Q 005421          644 VICQNSV  650 (697)
Q Consensus       644 VIGGpPC  650 (697)
                      |+.....
T Consensus       115 v~~~~~l  121 (219)
T 3dlc_A          115 IVSRGSV  121 (219)
T ss_dssp             EEEESCG
T ss_pred             EEECchH
Confidence            9976543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=90.26  E-value=0.31  Score=45.62  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +.+|||+-||.|.+...|.+.|.+   |+++|+++......+..      ....+...|+.++.....    ...+.+|+
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD~  119 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYDL  119 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCccE
Confidence            478999999999999999999874   68999999987776542      122234455554421100    01134898


Q ss_pred             EEecCCCC
Q 005421          644 VICQNSVP  651 (697)
Q Consensus       644 VIGGpPCQ  651 (697)
                      |+......
T Consensus       120 v~~~~~l~  127 (227)
T 3e8s_A          120 ICANFALL  127 (227)
T ss_dssp             EEEESCCC
T ss_pred             EEECchhh
Confidence            88765443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=90.22  E-value=0.61  Score=46.17  Aligned_cols=72  Identities=15%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             CCCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|++...+. +.|.   .|+++|+++......+......+.. ...+..+|+.++.           +
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  128 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E  128 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence            346789999999999998887 6675   4789999999887777655432211 1223456665442           4


Q ss_pred             CccEEEec
Q 005421          640 SIDFVICQ  647 (697)
Q Consensus       640 ~~DLVIGG  647 (697)
                      .+|+|+..
T Consensus       129 ~fD~v~~~  136 (287)
T 1kpg_A          129 PVDRIVSI  136 (287)
T ss_dssp             CCSEEEEE
T ss_pred             CeeEEEEe
Confidence            68888754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=90.18  E-value=0.43  Score=44.76  Aligned_cols=72  Identities=18%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      ..+.+|||+-||.|.+...+.+.|.   .++++|+++......+...       ..+...|+.++... +     ..+.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence            4568999999999999999988874   4789999998876654321       12445666543210 0     11467


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+....
T Consensus        95 D~v~~~~~  102 (230)
T 3cc8_A           95 DCVIFGDV  102 (230)
T ss_dssp             EEEEEESC
T ss_pred             CEEEECCh
Confidence            88876543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=90.18  E-value=0.03  Score=55.39  Aligned_cols=77  Identities=14%  Similarity=0.040  Sum_probs=50.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+.||.|+++..+.+.|.   .|+++|+|+......+....  ......++.+|+.++.-.       ..+.+ 
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f-   95 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY-   95 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence            467899999999999999988883   47899999876544432211  011223456777765421       01356 


Q ss_pred             EEEecCCCCc
Q 005421          643 FVICQNSVPQ  652 (697)
Q Consensus       643 LVIGGpPCQ~  652 (697)
                      +|++-+|...
T Consensus        96 ~vv~n~Py~~  105 (245)
T 1yub_A           96 KIVGNIPYHL  105 (245)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEeCCccc
Confidence            7888877553

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=90.09  E-value=0.31  Score=54.71  Aligned_cols=80  Identities=18%  Similarity=0.062  Sum_probs=48.6

Q ss_pred             CcccccCCCCChhHHHHHH--------cCC------ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChh
Q 005421          565 LTMLSVFSGIGGAEVTLHR--------LGI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK  629 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~--------aGf------~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~  629 (697)
                      .+|+|.+||.|||-+.+.+        .+.      .-..++++|+++.+.++.+.+..-++....+ +..+|.-.... 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-  324 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-  324 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence            4899999999999877532        110      0135799999999988877644333222111 13444321110 


Q ss_pred             hHHHhhhccCCccEEEecCCCC
Q 005421          630 KFESLIHKLGSIDFVICQNSVP  651 (697)
Q Consensus       630 ~I~~l~~~~g~~DLVIGGpPCQ  651 (697)
                            .....||+|++=||=.
T Consensus       325 ------~~~~~fD~Iv~NPPf~  340 (544)
T 3khk_A          325 ------HPDLRADFVMTNPPFN  340 (544)
T ss_dssp             ------CTTCCEEEEEECCCSS
T ss_pred             ------cccccccEEEECCCcC
Confidence                  0125799999999854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=90.08  E-value=0.28  Score=48.08  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=53.3

Q ss_pred             CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g-~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      +.+||||-||.|..++.+-++ +-. ..|+++|+++......+.++...+.. . ..++.+|..++-.    .+  ..+.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence            358999999999999988764 211 24789999999998888888764322 1 1233455543211    11  1268


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      ||+|+--.+...
T Consensus       130 fD~V~~d~~~~~  141 (221)
T 3dr5_A          130 YQLVFGQVSPMD  141 (221)
T ss_dssp             EEEEEECCCTTT
T ss_pred             cCeEEEcCcHHH
Confidence            999987655443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=90.03  E-value=0.57  Score=48.47  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=50.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +.+|||+-||.|.+++.+.++|.  ..|++||+++ .....+......+... ..++.+|+.++..        ..+.+|
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~D  107 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--------PFPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SSSCEE
T ss_pred             CCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC--------CCCccc
Confidence            56899999999999999999986  3588999995 4444554443322212 2245677776531        124799


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+.-++
T Consensus       108 ~Ivs~~~  114 (328)
T 1g6q_1          108 IIISEWM  114 (328)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCc
Confidence            9997654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=89.96  E-value=0.54  Score=45.39  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+||||.||.|+++..|.+. |-. ..|+++|+++.+...+...-.. + ....++.+|+.+...  +.   ...+.|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~  148 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAMV  148 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCcE
Confidence            4678999999999999888765 311 2478999997754333322211 1 223345677765321  11   012579


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+.-+|
T Consensus       149 D~V~~~~~  156 (233)
T 2ipx_A          149 DVIFADVA  156 (233)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99997555

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=89.95  E-value=0.27  Score=43.72  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=50.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~~~g  639 (697)
                      ..+.+|||+-||.|++...+.+. |-. ..++++|+++ ....          ....+...|+.+... +.+.... ..+
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence            34568999999999999988776 422 2468899998 4211          122244567765431 1111111 125


Q ss_pred             CccEEEecCCCCccc
Q 005421          640 SIDFVICQNSVPQIP  654 (697)
Q Consensus       640 ~~DLVIGGpPCQ~FS  654 (697)
                      .+|+|+..+|+..+.
T Consensus        88 ~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEEECCCCCCCS
T ss_pred             ceeEEEECCCccccC
Confidence            799999998887554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.93  E-value=0.35  Score=48.51  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+-+|||+|||.|...++..++|-+   ++++|+++.+..+.+..+
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~  254 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVL  254 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHH
Confidence            4557999999999999999999964   688999999887776654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=89.88  E-value=0.57  Score=45.22  Aligned_cols=72  Identities=10%  Similarity=0.022  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+-||.|.+...+.+.  |.   .++++|+++......+..     .+...+..+|+.++..         .+.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~~   95 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQK   95 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SSC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cCC
Confidence            4578999999999999988877  64   368999999987776653     1223355677776541         146


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      ||+|+.....+
T Consensus        96 fD~v~~~~~l~  106 (259)
T 2p35_A           96 ADLLYANAVFQ  106 (259)
T ss_dssp             EEEEEEESCGG
T ss_pred             cCEEEEeCchh
Confidence            89988765443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=89.84  E-value=0.78  Score=42.77  Aligned_cols=74  Identities=20%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             CCCcccccCCCCChhH-HHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAE-VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGls-lGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|.+. .-+...|.+   |+++|+++.+....+......+ ....+...|+.++..        ..+.+
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~f   90 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDESM   90 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCce
Confidence            4578999999988873 445667763   6899999998887776554332 223345677766541        12468


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+...
T Consensus        91 D~v~~~~   97 (209)
T 2p8j_A           91 SFVYSYG   97 (209)
T ss_dssp             EEEEECS
T ss_pred             eEEEEcC
Confidence            9998653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=89.83  E-value=0.48  Score=47.72  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc----CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhh
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLI  635 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~a----Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~  635 (697)
                      .+.+-+||||=||.|.+++.|.+.    |.   .|++||+++......+......+... ..++.+|+.++.        
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~--------  136 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------  136 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC--------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc--------
Confidence            345789999999999999888764    43   36899999988777766544332221 224567887664        


Q ss_pred             hccCCccEEEecC
Q 005421          636 HKLGSIDFVICQN  648 (697)
Q Consensus       636 ~~~g~~DLVIGGp  648 (697)
                        ++++|+|+...
T Consensus       137 --~~~~d~v~~~~  147 (261)
T 4gek_A          137 --IENASMVVLNF  147 (261)
T ss_dssp             --CCSEEEEEEES
T ss_pred             --ccccccceeee
Confidence              24688887654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=89.74  E-value=0.48  Score=50.92  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=46.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      -+|||+=||.|-+++-..++|-  +.|++||.++.+..+ +..-..++... ..++.+|+.++..         ...+|+
T Consensus        85 k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~Dv  152 (376)
T 4hc4_A           85 KTVLDVGAGTGILSIFCAQAGA--RRVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVDA  152 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEEE
T ss_pred             CEEEEeCCCccHHHHHHHHhCC--CEEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------CccccE
Confidence            4699999999999999999997  458999999754332 22222222212 2245677777642         247999


Q ss_pred             EEe
Q 005421          644 VIC  646 (697)
Q Consensus       644 VIG  646 (697)
                      ||.
T Consensus       153 ivs  155 (376)
T 4hc4_A          153 IVS  155 (376)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            983

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=89.65  E-value=0.29  Score=47.35  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=36.3

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 005421          559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK  605 (697)
Q Consensus       559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~  605 (697)
                      +.++.+.+|||+-||.|.+...+.+.|.+   |+++|+++......+
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~   80 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE   80 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence            34456789999999999999999998874   589999998766554

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=89.64  E-value=0.5  Score=38.20  Aligned_cols=29  Identities=14%  Similarity=0.148  Sum_probs=25.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDA  165 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da  165 (697)
                      .++.+..|+.|||+.+.|.+|+.....|-
T Consensus         7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv   35 (56)
T 2juj_A            7 LSSEIENLMSQGYSYQDIQKALVIAQNNI   35 (56)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTCS
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHhcccH
Confidence            45679999999999999999999988873

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=89.46  E-value=0.28  Score=49.61  Aligned_cols=77  Identities=16%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      .+.+.+|||+-||.|.+.+.+..+..+-..|+++|+++......+.+....+... ..++.+|+.++..        . +
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~-~  186 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R-E  186 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-S
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-C
Confidence            4567889999999999988873222222357899999998888877654322111 2245677776542        1 5


Q ss_pred             CccEEEe
Q 005421          640 SIDFVIC  646 (697)
Q Consensus       640 ~~DLVIG  646 (697)
                      .||+|+.
T Consensus       187 ~fD~v~~  193 (305)
T 3ocj_A          187 GYDLLTS  193 (305)
T ss_dssp             CEEEEEC
T ss_pred             CeEEEEE
Confidence            7888885

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=89.38  E-value=0.69  Score=46.35  Aligned_cols=83  Identities=16%  Similarity=0.125  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhc--CCCCCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~--n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|||+-||.|.+...|.+.  +.  ..|+++|+++......+......  ......++.+|+.++....-..+  ..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV--DK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT--TS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccc--cC
Confidence            5788999999999999998842  22  35789999999887777654432  12233356788877652210000  12


Q ss_pred             CCccEEEecCC
Q 005421          639 GSIDFVICQNS  649 (697)
Q Consensus       639 g~~DLVIGGpP  649 (697)
                      +.||+|+....
T Consensus       112 ~~fD~V~~~~~  122 (299)
T 3g5t_A          112 QKIDMITAVEC  122 (299)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEeHhhH
Confidence            57999987643

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=89.21  E-value=0.62  Score=47.87  Aligned_cols=82  Identities=24%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc------CC-----CCCccccccccccChhh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK  630 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~------n~-----~g~li~~~DI~~Lt~~~  630 (697)
                      .+.+|||+.||.|.+++.+.++ |-. ..|+++|+++.+....+.+....      |+     ....+..+|+.++.. .
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~  182 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D  182 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence            4678999999999999998876 532 24789999999888777765431      11     112244577765431 1


Q ss_pred             HHHhhhccCCccEEEecCCCC
Q 005421          631 FESLIHKLGSIDFVICQNSVP  651 (697)
Q Consensus       631 I~~l~~~~g~~DLVIGGpPCQ  651 (697)
                      +.     .+.||+|+-..|+.
T Consensus       183 ~~-----~~~fD~V~~~~~~~  198 (336)
T 2b25_A          183 IK-----SLTFDAVALDMLNP  198 (336)
T ss_dssp             ----------EEEEEECSSST
T ss_pred             cC-----CCCeeEEEECCCCH
Confidence            11     14699999776654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=89.16  E-value=0.48  Score=52.21  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+.||.|.+.+.+.+.|.  ..|+++|+++ .....+......+. ....++.+|+.++..         .+.+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f  225 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  225 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence            357899999999999999988875  3578999998 44454544332221 122345677766531         1479


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+..+|
T Consensus       226 D~Ivs~~~  233 (480)
T 3b3j_A          226 DIIISEPM  233 (480)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCc
Confidence            99997554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=89.09  E-value=0.3  Score=50.43  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=54.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +++-+||+|.||.|++...+.+.+ ....|++||+|+...+..+.++...    +.+...++.+|..+.    +.   ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence            355789999999999998887764 2345889999999998888876431    112222445565431    11   11


Q ss_pred             cCCccEEEecCCC
Q 005421          638 LGSIDFVICQNSV  650 (697)
Q Consensus       638 ~g~~DLVIGGpPC  650 (697)
                      .+.+|+|+-.+|.
T Consensus       166 ~~~fD~Ii~d~~~  178 (304)
T 2o07_A          166 QDAFDVIITDSSD  178 (304)
T ss_dssp             SSCEEEEEEECC-
T ss_pred             CCCceEEEECCCC
Confidence            3579999987664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=89.06  E-value=0.7  Score=46.70  Aligned_cols=51  Identities=14%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHH
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW  607 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~  607 (697)
                      +..|......+.+|||+-||.|.+++.+.+.  +.   .|+++|+++......+..
T Consensus        37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred             HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence            4444443334678999999999999988876  43   478999999887766653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=88.80  E-value=0.44  Score=47.60  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      ..+.+|||+-||.|.+...+.+.   |.   .|+++|+++......+......+ ....++.+|+.++..         .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~   87 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N   87 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence            35689999999999999988776   44   36899999998877776544321 122345678776542         1


Q ss_pred             CCccEEEecC
Q 005421          639 GSIDFVICQN  648 (697)
Q Consensus       639 g~~DLVIGGp  648 (697)
                      +.||+|+...
T Consensus        88 ~~fD~v~~~~   97 (284)
T 3gu3_A           88 DKYDIAICHA   97 (284)
T ss_dssp             SCEEEEEEES
T ss_pred             CCeeEEEECC
Confidence            4799998654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=88.58  E-value=0.44  Score=48.46  Aligned_cols=80  Identities=23%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +.+-+||+|-||.|++...+.+.. ....+.+||+|+...+..+.++...+    .+...++.+|+.+.    +.   ..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence            356789999999999998887663 23468899999999988888764321    11222345555432    11   11


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.+|+|+..++
T Consensus       149 ~~~fD~Ii~d~~  160 (283)
T 2i7c_A          149 TNTYDVIIVDSS  160 (283)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCCceEEEEcCC
Confidence            357999998654

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=88.32  E-value=0.89  Score=35.49  Aligned_cols=27  Identities=15%  Similarity=0.192  Sum_probs=24.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKD  164 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~d  164 (697)
                      +..+..|+.|||+.+.|.+|+.....+
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nn   31 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQNN   31 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhcc
Confidence            456899999999999999999998887

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=87.95  E-value=0.89  Score=45.22  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|.+...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++.-        ..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~  149 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN  149 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence            35679999999999999988876 76   3689999998877666554332221 12245567766531        114


Q ss_pred             CccEEEec
Q 005421          640 SIDFVICQ  647 (697)
Q Consensus       640 ~~DLVIGG  647 (697)
                      .||+|+..
T Consensus       150 ~fD~v~~~  157 (297)
T 2o57_A          150 SYDFIWSQ  157 (297)
T ss_dssp             CEEEEEEE
T ss_pred             CEeEEEec
Confidence            67877754

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=87.93  E-value=0.46  Score=38.36  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=32.4

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      -|..|++|||+.+-|.+|+..-.. |++.--++||.+-.
T Consensus        10 ~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~   47 (56)
T 2juj_A           10 EIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVS   47 (56)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHc
Confidence            489999999999999999987655 88888888887654

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=87.93  E-value=0.65  Score=42.18  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=33.6

Q ss_pred             hHHHHHHHHhcCCCh-HHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          137 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       137 ~~~~~~~lv~MGF~e-eev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      +.+++..|+.|||+. +.+.+|+.+++-+  ++.-+|+|++.
T Consensus        66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~  105 (108)
T 2cwb_A           66 WQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG  105 (108)
T ss_dssp             THHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence            567899999999965 7999999999965  78889999865

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=87.80  E-value=0.47  Score=49.04  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=54.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccChhhHHHhhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      +.+.+||+|-||.|++...+.+.. ....|.+||+|+...+..+.++...+     .+...++.+|+.+.    +..   
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~---  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER---  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence            456789999999999988887652 22457899999999888887764311     12223455666542    111   


Q ss_pred             ccCCccEEEecCCC
Q 005421          637 KLGSIDFVICQNSV  650 (697)
Q Consensus       637 ~~g~~DLVIGGpPC  650 (697)
                      ..+.+|+|+..+|.
T Consensus       148 ~~~~fD~Ii~d~~~  161 (314)
T 1uir_A          148 TEERYDVVIIDLTD  161 (314)
T ss_dssp             CCCCEEEEEEECCC
T ss_pred             cCCCccEEEECCCC
Confidence            23579999987654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=87.61  E-value=0.44  Score=48.97  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh---c-CCCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~---~-n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +.+.+||+|-||.|++...+.+.. ....|++||+|+......+.++..   . ..+...++.+|+.++...    .  .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~--~  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T--P  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S--C
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c--c
Confidence            456789999999999999888762 234688999999998888876531   1 111222445565432110    0  1


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.+|+|+.-.|
T Consensus       167 ~~~fDvIi~d~~  178 (304)
T 3bwc_A          167 DNTYDVVIIDTT  178 (304)
T ss_dssp             TTCEEEEEEECC
T ss_pred             CCceeEEEECCC
Confidence            357999998654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=87.54  E-value=0.9  Score=44.07  Aligned_cols=49  Identities=10%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  611 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~  611 (697)
                      .+.+|||+-||.|..+..+.+..=.-..|+++|+++......+.++...
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN  108 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999988776210124789999999988888776543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=87.47  E-value=0.24  Score=50.00  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=51.0

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      |..+.+.+-+||||=||.|.++..|...|.+   |++||+++...+..+      .+++..+..+|+.++.-        
T Consensus        33 l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~--------   95 (257)
T 4hg2_A           33 LGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL--------   95 (257)
T ss_dssp             HHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC--------
T ss_pred             HHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc--------
Confidence            4444556678999999999999999999864   689999998654332      12233345566665532        


Q ss_pred             ccCCccEEEec
Q 005421          637 KLGSIDFVICQ  647 (697)
Q Consensus       637 ~~g~~DLVIGG  647 (697)
                      .-+.||+|+.+
T Consensus        96 ~~~sfD~v~~~  106 (257)
T 4hg2_A           96 PPASVDVAIAA  106 (257)
T ss_dssp             CSSCEEEEEEC
T ss_pred             cCCcccEEEEe
Confidence            12579999864

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=87.44  E-value=0.48  Score=49.31  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +.+.+||||-||.|++...+.+.. ....|++||+|+.+....+.++...    +.+...++.+|+.+.    +.   ..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence            345789999999999988887651 1245789999999998888765431    011122344555432    11   11


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.+|+|+..++
T Consensus       187 ~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 TNTYDVIIVDSS  198 (321)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCCceEEEECCc
Confidence            257999997664

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=87.39  E-value=0.76  Score=42.49  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=46.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCc-------eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccc-cccccccChh-hH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF  631 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~-------~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~-~~DI~~Lt~~-~I  631 (697)
                      +.+.+||||-||.|+++..+.+. |-.       -..|+++|+++...           .....++ .+|+.+.... .+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence            34678999999999999988776 421       02478999998520           1122244 5677654321 11


Q ss_pred             HHhhhccCCccEEEecCCC
Q 005421          632 ESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       632 ~~l~~~~g~~DLVIGGpPC  650 (697)
                      .... .-+.||+|+...++
T Consensus        90 ~~~~-~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           90 LEVL-PGRRADVILSDMAP  107 (196)
T ss_dssp             HHHS-GGGCEEEEEECCCC
T ss_pred             HHhc-CCCCCcEEEeCCCC
Confidence            1111 11379999976543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=87.36  E-value=1.1  Score=43.70  Aligned_cols=77  Identities=23%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++.-        ..+.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  129 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS  129 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence            4679999999999999888764 54   4789999998887777655433222 12345667766531        1246


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      ||+|+....-
T Consensus       130 fD~v~~~~~l  139 (273)
T 3bus_A          130 FDAVWALESL  139 (273)
T ss_dssp             EEEEEEESCT
T ss_pred             ccEEEEechh
Confidence            8988865443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=87.20  E-value=1.1  Score=41.60  Aligned_cols=38  Identities=11%  Similarity=-0.040  Sum_probs=28.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET  599 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~  599 (697)
                      +.+.+||||-||.|+++..+.+. +-.-..|+++|+++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            45678999999999999988754 200124789999984

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=87.18  E-value=0.71  Score=36.03  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      |..++.|||+.+-|.||+..-.- |++.--+.|+.+-
T Consensus         8 I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~   43 (46)
T 2oo9_A            8 IENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA   43 (46)
T ss_dssp             HHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence            78899999999999999987655 8888888888653

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=87.16  E-value=1.8  Score=51.26  Aligned_cols=103  Identities=16%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCcccccc--ccchhhhHHH
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITLQ  215 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~--~~~~m~k~l~  215 (697)
                      .+.+..|+.||||+.-..+|+..-|... .+.-.++|++..--..    -++.......... .....  ....-+.+..
T Consensus       653 ~~~l~~L~~mGf~~~~~~kal~~t~n~~-~e~a~~wl~~hmdd~d----i~~p~~~~~~~~~-~s~~~~~~~~~~e~i~~  726 (854)
T 3ihp_A          653 ESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHMDDPD----FANPLILPGSSGP-GSTSAAADPPPEDCVTT  726 (854)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHHHTTSCC-HHHHHHHHHHHTTSCG----GGSCCCCC---------------CCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhhcCCCc-hHHHhHHHhhccCccc----ccccccccccccc-cccccccCCCCHHHHHH
Confidence            3578999999999999999999999876 6777888886642110    0111100000000 00000  0012356678


Q ss_pred             HHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 005421          216 LLEMGFSENQVSLAIEKFGSKTPISELADKIFS  248 (697)
Q Consensus       216 L~~MGFseeEas~AI~rcG~da~i~eLvD~I~A  248 (697)
                      |..|||+.++|..|+...+-  .++.-+|.|+.
T Consensus       727 l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs  757 (854)
T 3ihp_A          727 IVSMGFSRDQALKALRATNN--SLERAVDWIFS  757 (854)
T ss_dssp             HHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhc
Confidence            99999999999999999976  57777787776

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=87.12  E-value=1.1  Score=44.41  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+-||.|.+...+.+.|.   .|+++|+++......+..+     +...+..+|+.++..         .+.||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD  119 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD  119 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence            457899999999999999988775   4789999999877766532     222355677776542         14689


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+....
T Consensus       120 ~v~~~~~  126 (279)
T 3ccf_A          120 AVFSNAM  126 (279)
T ss_dssp             EEEEESC
T ss_pred             EEEEcch
Confidence            8886554

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=86.95  E-value=1.2  Score=36.47  Aligned_cols=39  Identities=15%  Similarity=0.125  Sum_probs=31.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT  175 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~---G~da~~~~Lld~I~  175 (697)
                      ..+.+..|+.+||++.|+.+|++++   .++.++++|+-..+
T Consensus        17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL   58 (62)
T 1ixs_A           17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL   58 (62)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            5678999999999999999999998   44556777765543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=86.76  E-value=0.82  Score=46.12  Aligned_cols=82  Identities=12%  Similarity=0.001  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+=||.|.++. +.+.+ + ..|+++|+|+.....++.....  .....++.+|+.++.-..+..   ..+..+
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~~---~~~~~~   92 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELAE---KMGQPL   92 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHHH---HHTSCE
T ss_pred             CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhhc---ccCCce
Confidence            35689999999999999 87632 2 1278999999998877653321  112335678998876443311   013468


Q ss_pred             EEEecCCCCc
Q 005421          643 FVICQNSVPQ  652 (697)
Q Consensus       643 LVIGGpPCQ~  652 (697)
                      +|+|.+|=+-
T Consensus        93 ~vvsNlPY~i  102 (252)
T 1qyr_A           93 RVFGNLPYNI  102 (252)
T ss_dssp             EEEEECCTTT
T ss_pred             EEEECCCCCc
Confidence            9999998553

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=86.25  E-value=0.82  Score=44.85  Aligned_cols=82  Identities=15%  Similarity=0.075  Sum_probs=55.4

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc--
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--  637 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~--  637 (697)
                      +-+||++-||.|+.++.+-++   +.   .++++|+++......+.+|...+... ..++.+|..++    +..+...  
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~~  143 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQE  143 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhccC
Confidence            458999999999999888765   43   47899999999999888887543221 12344555432    1222111  


Q ss_pred             -cCCccEEEecCCCCc
Q 005421          638 -LGSIDFVICQNSVPQ  652 (697)
Q Consensus       638 -~g~~DLVIGGpPCQ~  652 (697)
                       .+.||+|+--.+|..
T Consensus       144 ~~~~fD~I~~d~~~~~  159 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPN  159 (237)
T ss_dssp             CTTCEEEEEECSCGGG
T ss_pred             CCCCcCEEEECCchHH
Confidence             367999998776654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=86.20  E-value=0.87  Score=44.98  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh------cCCCCCccccccccccChhhHHHhhh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~------~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      .+.+||||=||.|.+.+.+.+.. +-..+++||+++......+.....      .+.....++.+|+.+.    +...+ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~-  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF-  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred             CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence            45789999999999999887663 112478999999876655433211      1111223456777642    11111 


Q ss_pred             ccCCccEEEecCCCCcc
Q 005421          637 KLGSIDFVICQNSVPQI  653 (697)
Q Consensus       637 ~~g~~DLVIGGpPCQ~F  653 (697)
                      ..+.+|+|+-.+|..-+
T Consensus       120 ~~~~~D~v~~~~~dp~~  136 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHF  136 (235)
T ss_dssp             CTTCEEEEEEESCC---
T ss_pred             CCcCeeEEEEeCCCchh
Confidence            12679999877665433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=86.09  E-value=0.9  Score=44.48  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=48.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+-||.|.+...+.+.  |.   .|+++|+++......+...     ....+..+|+.++..        ..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence            35678999999999999888876  64   3788999999877665432     122345567665531        114


Q ss_pred             CccEEEecC
Q 005421          640 SIDFVICQN  648 (697)
Q Consensus       640 ~~DLVIGGp  648 (697)
                      .||+|+...
T Consensus       148 ~fD~v~~~~  156 (269)
T 1p91_A          148 SMDAIIRIY  156 (269)
T ss_dssp             CEEEEEEES
T ss_pred             ceeEEEEeC
Confidence            688887543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=86.06  E-value=1.6  Score=43.12  Aligned_cols=76  Identities=20%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC----CCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT----GELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~----g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+||||-||.|.+...|...|.   .|+++|+++......+.........    ...+..+|+.++..+    + -..
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence            457899999999999999999997   3689999998877765532111110    111234555444311    1 122


Q ss_pred             CCccEEEe
Q 005421          639 GSIDFVIC  646 (697)
Q Consensus       639 g~~DLVIG  646 (697)
                      +.+|+|+.
T Consensus       129 ~~fD~V~~  136 (293)
T 3thr_A          129 DGFDAVIC  136 (293)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            67999995

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=86.00  E-value=0.71  Score=48.04  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +.+-+||+|-||.|++...+.+.. +...|.+||+|+......+.++...+    .+...++.+|+.+.    +.   ..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH  178 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence            345789999999999998887652 23468899999999988888764321    11122344555431    11   12


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.+|+|+..+|
T Consensus       179 ~~~fD~Ii~d~~  190 (314)
T 2b2c_A          179 KNEFDVIITDSS  190 (314)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCceEEEEcCC
Confidence            357999997654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=85.91  E-value=1.9  Score=46.00  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc--ccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li--~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||++||.||=+..+-.++-. ..|+|+|+++.-.+.++.+-...... .+.  ..-.|...+...+..+  ..+.
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~-~~~~~~~v~v~~~D~~~~~~~--~~~~  223 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPE-EIRDGNQVRVTSWDGRKWGEL--EGDT  223 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCT-TTTTSSSEEEECCCGGGHHHH--STTC
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhh-hhccCCceEEEeCchhhcchh--cccc
Confidence            3678999999999999888887743 46899999998777776654432111 000  0112233333333221  2357


Q ss_pred             ccEEEecCCCCcc
Q 005421          641 IDFVICQNSVPQI  653 (697)
Q Consensus       641 ~DLVIGGpPCQ~F  653 (697)
                      ||.|+-=+||.+-
T Consensus       224 fD~VLlDaPCSg~  236 (359)
T 4fzv_A          224 YDRVLVDVPCTTD  236 (359)
T ss_dssp             EEEEEEECCCCCH
T ss_pred             CCEEEECCccCCC
Confidence            9999999999874

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=85.57  E-value=1.3  Score=41.78  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=51.3

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccC
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+|||+.||.|..++.+.++   |.   .|+++|+++......+.++...+... ..++.+|..++    +.   ...+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~  126 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD  126 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence            468999999999999988775   43   47899999999888887776442211 11334444321    11   1124


Q ss_pred             CccEEEecCCCCc
Q 005421          640 SIDFVICQNSVPQ  652 (697)
Q Consensus       640 ~~DLVIGGpPCQ~  652 (697)
                       ||+|+-..++..
T Consensus       127 -fD~v~~~~~~~~  138 (210)
T 3c3p_A          127 -IDILFMDCDVFN  138 (210)
T ss_dssp             -EEEEEEETTTSC
T ss_pred             -CCEEEEcCChhh
Confidence             999987766543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=85.55  E-value=0.5  Score=47.14  Aligned_cols=48  Identities=8%  Similarity=-0.034  Sum_probs=40.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      +..-+||||=||.|-+++.+..+.=.. .++++|+|+.+..+.+.+...
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~   95 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGK   95 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHh
Confidence            456899999999999999998774333 689999999999999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=85.55  E-value=1.8  Score=39.17  Aligned_cols=43  Identities=12%  Similarity=-0.035  Sum_probs=36.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  607 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~  607 (697)
                      ..+.+|||+-||.|.+...+.+.+.   .++++|+++......+..
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh
Confidence            3467899999999999999998883   578999999987777653

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=85.35  E-value=0.73  Score=45.26  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      .+..|++|||++..|..|+..++- |.+.-+|.||.
T Consensus       166 kV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~  200 (201)
T 3k9o_A          166 KIENLCAMGFDRNAVIVALSSKSW-DVETATELLLS  200 (201)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence            689999999999999999999977 99999999986

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=85.31  E-value=2  Score=44.05  Aligned_cols=47  Identities=9%  Similarity=0.013  Sum_probs=36.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      +.+.+||||=||.|+....+.+.|.  ..|+++|+++.+....+..+..
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence            5578999999999997666666664  2478999999998887775543

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=85.26  E-value=0.71  Score=38.64  Aligned_cols=38  Identities=11%  Similarity=0.074  Sum_probs=32.2

Q ss_pred             hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      -+.++..|||. ...+.+|++..+. |++.-+|+|+....
T Consensus        22 ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~   60 (67)
T 2dna_A           22 EMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQG   60 (67)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCS
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            47889999995 5577999999984 99999999998543

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=85.13  E-value=2.5  Score=42.02  Aligned_cols=130  Identities=10%  Similarity=0.116  Sum_probs=77.5

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE  128 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~  128 (697)
                      .-|+..|...||+++.|+.||+..   |==|-....+..+....-.+.                                
T Consensus        79 ~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~--------------------------------  126 (221)
T 3d5l_A           79 SDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL--------------------------------  126 (221)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--------------------------------
Confidence            338888999999999998888755   544777777777765543100                                


Q ss_pred             CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421          129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  208 (697)
Q Consensus       129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~  208 (697)
                          -.  .......|..-|++.+.|..|++++-++.-. +++.-++.- ..+...                  ..+...
T Consensus       127 ----~G--~~~I~~eL~~KGI~~~~I~~al~~~~~~~e~-e~a~~l~~K-k~~~~~------------------~~~~~~  180 (221)
T 3d5l_A          127 ----KG--PGIIRQHLRQKGIGESDIDDALTQFTPEVQA-ELAKKLALK-LFRRYR------------------NQPERR  180 (221)
T ss_dssp             ----CC--HHHHHHHHHHTTCCHHHHHHHGGGCCHHHHH-HHHHHHHHH-HHHHTT------------------TSCHHH
T ss_pred             ----cc--HHHHHHHHHHcCCCHHHHHHHHHhCCHHHHH-HHHHHHHHH-HHhhcc------------------CCChHH
Confidence                00  3456678999999999999999987332111 111111111 111111                  000011


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 005421          209 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI  239 (697)
Q Consensus       209 ~m~k~l-~L~~MGFseeEas~AI~rcG~da~i  239 (697)
                      ...|+. +|..=||+-+.+..|+..+..+..+
T Consensus       181 ~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~~~  212 (221)
T 3d5l_A          181 REQKVQQGLTTKGFSSSVYEMIKDEVVPQPDL  212 (221)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhccchhhh
Confidence            235665 9999999999999998877555443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=85.07  E-value=0.76  Score=45.60  Aligned_cols=83  Identities=10%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhh--
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIH--  636 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~--  636 (697)
                      .+-+|||+-||.|..++.+.++   |.   .|+++|+++......+.++...+... ..++.+|..++    +..+..  
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  151 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE  151 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence            3468999999999999988775   43   47899999999888888887543211 11344555432    121211  


Q ss_pred             -ccCCccEEEecCCCCc
Q 005421          637 -KLGSIDFVICQNSVPQ  652 (697)
Q Consensus       637 -~~g~~DLVIGGpPCQ~  652 (697)
                       ..+.||+|+-..++..
T Consensus       152 ~~~~~fD~V~~d~~~~~  168 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDN  168 (247)
T ss_dssp             GGTTCBSEEEECSCSTT
T ss_pred             CCCCCEEEEEEcCchHH
Confidence             1367999998776654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=84.84  E-value=0.66  Score=48.78  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +.+-+||+|-||.|++...+.+.. ....|++||+|+......+.++...    +.+...++.+|+.+.    +..+  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence            455789999999999998887762 2345889999999998888776431    111222445665432    1110  1


Q ss_pred             cCCccEEEecCC
Q 005421          638 LGSIDFVICQNS  649 (697)
Q Consensus       638 ~g~~DLVIGGpP  649 (697)
                      .+.||+|+--++
T Consensus       192 ~~~fDlIi~d~~  203 (334)
T 1xj5_A          192 EGSYDAVIVDSS  203 (334)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCccEEEECCC
Confidence            257999997543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=84.69  E-value=0.65  Score=48.96  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .++||+|-||.|++..-+.+.  +.   .+.+||||+......+.|+.....+...++.+|..+.-    ..+  .-+.+
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f  160 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR  160 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence            469999999999999888873  54   36789999999998888764321122234556665331    110  12579


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+||...
T Consensus       161 DvIi~D~  167 (317)
T 3gjy_A          161 DVIIRDV  167 (317)
T ss_dssp             EEEEECC
T ss_pred             CEEEECC
Confidence            9999754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=84.52  E-value=0.64  Score=44.91  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      .+.+||||-||.|.+...+.+.|.  ..|+++|+++.+....+.+..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence            457899999999999988888886  457899999998888877654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=84.37  E-value=1.6  Score=42.48  Aligned_cols=84  Identities=13%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS  640 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~--g~  640 (697)
                      +-+|||+-||.|..++.+.++--.-..|+++|+++......+.++...+... ..+..+|+.+.    +..+....  +.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~  148 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE  148 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence            4589999999999998887751000247899999999888888776543211 11234554321    22221111  67


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      ||+|+-..++.
T Consensus       149 fD~V~~d~~~~  159 (232)
T 3cbg_A          149 FDLIFIDADKR  159 (232)
T ss_dssp             EEEEEECSCGG
T ss_pred             cCEEEECCCHH
Confidence            99999766643

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=84.17  E-value=1.7  Score=35.03  Aligned_cols=40  Identities=18%  Similarity=0.098  Sum_probs=32.9

Q ss_pred             hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF-~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      +..++..|..||| .++.-..|+.++|-+  ++..++.|+...
T Consensus         9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gn--v~~aI~~Ll~~~   49 (54)
T 2cp8_A            9 TAALMAHLFEMGFCDRQLNLRLLKKHNYN--ILQVVTELLQLS   49 (54)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHTTTTTC--HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhcc
Confidence            5668999999999 888889999998876  677777777654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=83.88  E-value=2  Score=47.40  Aligned_cols=80  Identities=10%  Similarity=0.128  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHH-------hhcC--CCCCccccccccccChhhHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKFE  632 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~-------~~~n--~~g~li~~~DI~~Lt~~~I~  632 (697)
                      .+-+||||=||.|.+.+.+. ..|.  ..|++||+++.+...-+...       ...+  .....++.+|+.++.-..  
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d--  248 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE--  248 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence            46789999999999998775 4565  34789999987665554321       1111  112335678988764321  


Q ss_pred             HhhhccCCccEEEecCCC
Q 005421          633 SLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       633 ~l~~~~g~~DLVIGGpPC  650 (697)
                          .++.+|+|+..++|
T Consensus       249 ----~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          249 ----RIANTSVIFVNNFA  262 (438)
T ss_dssp             ----HHHTCSEEEECCTT
T ss_pred             ----ccCCccEEEEcccc
Confidence                12469999987776

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=83.76  E-value=11  Score=35.73  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             hhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP  129 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~  129 (697)
                      -|+..|...||+++.|+.||+..   |==|-....+..+....-.  +-                               
T Consensus        36 EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~--~~-------------------------------   82 (162)
T 3dfg_A           36 ELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASS--GY-------------------------------   82 (162)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTT--TC-------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--cc-------------------------------
Confidence            38888999999999998888776   5446666666666544320  00                               


Q ss_pred             CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccch
Q 005421          130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGT  209 (697)
Q Consensus       130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~~  209 (697)
                          .  .......|..-|++.+.|..|++++.++  -.+++--++.-.......            .     +   ...
T Consensus        83 ----G--~~~I~~eL~~KGI~~~~I~~al~~~~~d--e~e~a~~l~~Kk~~~~~~------------~-----~---~~~  134 (162)
T 3dfg_A           83 ----G--PLHIRAELGTHGLDSDAVSAAMATFEGD--WTENALDLIRRRFGEDGP------------V-----D---LAQ  134 (162)
T ss_dssp             ----C--HHHHHHHHHHTTCCHHHHHHHHTTCCSC--HHHHHHHHHHHHHCTTCC------------C-----S---HHH
T ss_pred             ----c--HHHHHHHHHHcCCCHHHHHHHHHhCcHh--HHHHHHHHHHHhcCCCCC------------C-----C---HHH
Confidence                0  3456688999999999999999998532  122222222211111000            0     0   112


Q ss_pred             hhhHH-HHHhcCCCHHHHHHHHHh
Q 005421          210 MEITL-QLLEMGFSENQVSLAIEK  232 (697)
Q Consensus       210 m~k~l-~L~~MGFseeEas~AI~r  232 (697)
                      ..|+. +|+.=||+-+.+..||..
T Consensus       135 k~K~~~~L~rrGF~~~~I~~~l~~  158 (162)
T 3dfg_A          135 RRKAADLLARRGFDGNSIRLATRF  158 (162)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHhc
Confidence            35665 999999999999988764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=83.11  E-value=0.75  Score=43.58  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI  603 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t  603 (697)
                      .+.+|||+-||.|.+...|.+.+= -..|+++|+++.....
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHH
Confidence            467899999999999999988731 1357899999985543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=83.00  E-value=1.2  Score=40.49  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      -+..|.+|||. ++.+.+||+..+- |++.-+|+|+.
T Consensus        69 qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~  104 (108)
T 2cwb_A           69 QLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFA  104 (108)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            57999999995 4799999999995 99999999996

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=82.62  E-value=0.71  Score=46.73  Aligned_cols=73  Identities=8%  Similarity=-0.030  Sum_probs=48.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      +++-+||++-||.|++...+.+.|   ..|.+||+|+...+..+.++...    ..+...++.+|..+.-          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            355789999999999988777665   45789999998877666544210    0111223345544321          


Q ss_pred             cCCccEEEecC
Q 005421          638 LGSIDFVICQN  648 (697)
Q Consensus       638 ~g~~DLVIGGp  648 (697)
                       +.+|+|+.-.
T Consensus       138 -~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -KKYDLIFCLQ  147 (262)
T ss_dssp             -CCEEEEEESS
T ss_pred             -hhCCEEEECC
Confidence             4689998764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=82.50  E-value=2.4  Score=44.40  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=48.8

Q ss_pred             CCCCcccccCCCCChhH-HHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421          562 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       562 p~~itvLSLFSGiGGls-lGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +.+.+|||+=||.||++ +-+.+ .|.   .|+++|+++.....-+.+....+.....++.+|+.++.          .+
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~  187 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL  187 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence            45789999999999876 33333 465   37899999998877777655433222234567776642          15


Q ss_pred             CccEEEe
Q 005421          640 SIDFVIC  646 (697)
Q Consensus       640 ~~DLVIG  646 (697)
                      .||+|+-
T Consensus       188 ~FDvV~~  194 (298)
T 3fpf_A          188 EFDVLMV  194 (298)
T ss_dssp             CCSEEEE
T ss_pred             CcCEEEE
Confidence            7999973

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=82.34  E-value=0.55  Score=46.48  Aligned_cols=82  Identities=13%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc--
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--  637 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~--  637 (697)
                      +-+||||-||.|+.++.+.++   |.   .|+++|+++......+.++...+... ..++.+|..++-    ..+...  
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~  133 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDG---QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGG  133 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTC---EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHC
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccC
Confidence            468999999999999988874   32   47899999877666666665443221 224456665432    111111  


Q ss_pred             cCCccEEEecCCCCc
Q 005421          638 LGSIDFVICQNSVPQ  652 (697)
Q Consensus       638 ~g~~DLVIGGpPCQ~  652 (697)
                      .+.||+|+-..++..
T Consensus       134 ~~~fD~V~~d~~~~~  148 (242)
T 3r3h_A          134 EHQFDFIFIDADKTN  148 (242)
T ss_dssp             SSCEEEEEEESCGGG
T ss_pred             CCCEeEEEEcCChHH
Confidence            368999987766543

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=81.85  E-value=7  Score=37.52  Aligned_cols=126  Identities=11%  Similarity=0.100  Sum_probs=79.4

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE  128 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~  128 (697)
                      .-|+..|...||+++.|..||...   |==|-....+..+....-...                                
T Consensus        36 ~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~--------------------------------   83 (177)
T 3e3v_A           36 KEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSD--------------------------------   83 (177)
T ss_dssp             HHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccc--------------------------------
Confidence            348999999999999999998765   444777777777765543210                                


Q ss_pred             CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421          129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  208 (697)
Q Consensus       129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~  208 (697)
                          -.  .......|..-|.+.+.|..|++++.++.-.+.+ .-++.- ..+....                  .+...
T Consensus        84 ----~G--~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a-~~l~~K-k~~~~~~------------------~~~~~  137 (177)
T 3e3v_A           84 ----KG--PKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKG-VTLAEK-LANRYSH------------------DSYRN  137 (177)
T ss_dssp             ----CC--HHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHH-HHHHHH-HHHHTTT------------------SCHHH
T ss_pred             ----cc--HHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHH-HHHHHH-HHhhccC------------------CChHH
Confidence                00  3456678999999999999999876432211111 111111 1111110                  00011


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCC
Q 005421          209 TMEITL-QLLEMGFSENQVSLAIEKFGS  235 (697)
Q Consensus       209 ~m~k~l-~L~~MGFseeEas~AI~rcG~  235 (697)
                      ...|+. +|+.=||+-+.+..||..+..
T Consensus       138 ~~~K~~~~L~rrGF~~~~I~~vl~~l~~  165 (177)
T 3e3v_A          138 KQNKIKQSLLTKGFSYDIIDTIIQELDL  165 (177)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence            235665 999999999999999987643

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=81.80  E-value=1.7  Score=44.62  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=33.1

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      ++++++.|+.|||+++.|..|+.++|=+  ++.-+++|+.
T Consensus       215 ~~~~v~~l~~mgf~~~~~~~al~~~nWd--~~~A~e~L~~  252 (253)
T 3e46_A          215 YTKKIENLCAAGFDRNAVIVALSSKSWD--VETATELLLS  252 (253)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence            7789999999999999999999999886  5667777764

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=81.74  E-value=0.54  Score=49.07  Aligned_cols=90  Identities=17%  Similarity=0.088  Sum_probs=55.6

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChh
Q 005421          550 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  629 (697)
Q Consensus       550 i~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~  629 (697)
                      +...|.+++. | ++-.+||||+|.|.+.+-+-+ |.  ..++.||.++.+.++++.+....  ....++..|..    .
T Consensus        80 l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~----~  148 (283)
T 2oo3_A           80 FLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGV----S  148 (283)
T ss_dssp             GHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHH----H
T ss_pred             HHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHH----H
Confidence            4556677776 3 456799999999997655555 33  45789999999999997654321  11223333422    1


Q ss_pred             hHHHhhhccCCccEEEecCCC
Q 005421          630 KFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       630 ~I~~l~~~~g~~DLVIGGpPC  650 (697)
                      -+..+......+|||.==||=
T Consensus       149 ~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A          149 KLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             HHHHHCSCTTSCEEEEECCCC
T ss_pred             HHHHhcCCCCCccEEEECCCC
Confidence            122222222369999988884

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=80.41  E-value=1  Score=44.22  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+.+|||+=||.|.+...|.+.|.+   |+++|+++......+.      .....++.+|+.++.-        ..+.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f   95 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV   95 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence            35678999999999999999988853   6899999976433211      1122345677766541        12578


Q ss_pred             cEEEecCCC
Q 005421          642 DFVICQNSV  650 (697)
Q Consensus       642 DLVIGGpPC  650 (697)
                      |+|+.....
T Consensus        96 D~v~~~~~l  104 (261)
T 3ege_A           96 DGVISILAI  104 (261)
T ss_dssp             SEEEEESCG
T ss_pred             eEEEEcchH
Confidence            988866543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=80.23  E-value=1.2  Score=42.38  Aligned_cols=70  Identities=26%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh
Q 005421          556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  635 (697)
Q Consensus       556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~  635 (697)
                      .+....+ +.+|||+-||.|.+...+...       +++|+++......+..       +..+...|+.++..       
T Consensus        41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-------   98 (219)
T 1vlm_A           41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL-------   98 (219)
T ss_dssp             HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred             HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence            3444445 679999999999998776543       6899999987776542       22244567665531       


Q ss_pred             hccCCccEEEecC
Q 005421          636 HKLGSIDFVICQN  648 (697)
Q Consensus       636 ~~~g~~DLVIGGp  648 (697)
                       ..+.+|+|+...
T Consensus        99 -~~~~fD~v~~~~  110 (219)
T 1vlm_A           99 -KDESFDFALMVT  110 (219)
T ss_dssp             -CTTCEEEEEEES
T ss_pred             -CCCCeeEEEEcc
Confidence             124688888543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	697
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	4e-05

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 624
           L +L ++SG+GG    L    I  + V +I+ +     + K  +  +      +  + I+
Sbjct: 3   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIE 57

Query: 625 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 658
            +T ++F+       S D ++            +
Sbjct: 58  GITLEEFDR-----LSFDMILMSPPCQPFTRIGR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	697
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.9
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.9
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	98.88
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	98.71
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.05
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.79
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.77
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.66
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.65
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.61
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.56
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.39
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.37
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	97.33
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.19
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	97.15
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.11
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.89
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.89
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.86
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.78
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.7
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.68
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.66
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.59
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.58
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.51
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.47
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	96.45
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.43
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	96.4
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.22
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.13
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.1
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.83
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.68
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.64
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	95.59
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	95.55
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.46
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.41
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.28
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.8
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.76
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.66
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	94.53
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	94.36
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	94.33
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.12
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.04
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.98
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	93.85
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	93.72
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	93.58
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	93.5
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	93.31
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.02
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	92.11
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	91.95
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	91.27
d2h00a1	250	Methyltransferase 10 domain containing protein MET	91.27
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	90.75
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	90.34
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	90.18
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	89.85
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	89.85
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	89.64
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	88.63
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	88.29
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	87.48
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	87.25
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	87.13
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	86.77
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.27
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	85.42
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	84.33
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.03
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	83.03
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	82.84
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	82.78
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	82.76
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	82.74
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	82.01
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	82.0
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	82.0
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	81.92
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	81.75
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	81.48
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	80.72

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.90  E-value=8e-25  Score=219.02  Aligned_cols=105  Identities=17%  Similarity=0.351  Sum_probs=92.0

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      |+||||||||||+++||++|||  ++++++|+|+.|+++|+.+|     +. .+..+||++++.+.+       +.+|||
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~--~~~~a~e~d~~a~~~~~~N~-----~~-~~~~~Di~~~~~~~~-------~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSDEF-------PKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC--EEEEEEECCHHHHHHHHHHC-----CS-EEEESCTTTSCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHC-----CC-CCccCChhhCCHhHc-------ccccEE
Confidence            6899999999999999999998  56899999999999998754     33 356799999987654       579999


Q ss_pred             EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                      +||||||+||.+|+            +.|++|+|+.||++|+|+|+.+||..
T Consensus        66 ~~g~PCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~Pk~  105 (324)
T d1dcta_          66 IGGPPCQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF  105 (324)
T ss_dssp             EECCCCTTTSSSSC------------CCCSSSHHHHHHHHHHHHHHHHCCSE
T ss_pred             eecccccccccccc------------cccccccccchHHHHHHHHHhhCCce
Confidence            99999999998754            46789999999999999999999864

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.90  E-value=1.6e-24  Score=219.71  Aligned_cols=111  Identities=19%  Similarity=0.302  Sum_probs=96.1

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc
Q 005421          558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  637 (697)
Q Consensus       558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~  637 (697)
                      ++..-++|+||||||||||+++||+++||  ++++++|+|+.|+++|+.+|..+       ..+||++++.+.+      
T Consensus         5 ~~~~~~~lrv~~lFsG~Gg~~~gl~~aG~--~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~------   69 (327)
T d2c7pa1           5 KDKQLTGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI------   69 (327)
T ss_dssp             SSCTTTTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS------
T ss_pred             ccccCCCCeEEEECccccHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhc------
Confidence            45556789999999999999999999998  56899999999999999876422       2589999987654      


Q ss_pred             cCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421          638 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  696 (697)
Q Consensus       638 ~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~  696 (697)
                       .++|||+||||||+||.+|+            +.|.+|+|+.||++|+|+|+.+||..
T Consensus        70 -~~~Dll~ggpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~kP~~  115 (327)
T d2c7pa1          70 -PDHDILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             -CCCSEEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             -ceeeeeecccccchhhhhhh------------hcCCcccchhHHHHHHHHHhccCCcE
Confidence             57999999999999999865            35788999999999999999999864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9e-25  Score=220.79  Aligned_cols=110  Identities=16%  Similarity=0.318  Sum_probs=81.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +|+||||||||||+++||+++||.+++++++|+++.|+++|+.+|     +...++.+||++++.+.+..     +++||
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~-----~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCC-----CCccE
Confidence            589999999999999999999999899999999999999998754     34456679999999887753     47999


Q ss_pred             EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHh--ccc
Q 005421          644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRV--RSM  695 (697)
Q Consensus       644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~v--K~~  695 (697)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|+.+  ||.
T Consensus        72 l~ggpPCq~fS~ag~------------~~~~~d~r~~l~~~~~~~i~~~~~kPk  113 (343)
T d1g55a_          72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEeeccccccccccc------------ccccccccccccchhhhhHhhhcCCCc
Confidence            999999999998754            4688999999999999999987  564

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=98.88  E-value=3e-10  Score=113.83  Aligned_cols=178  Identities=15%  Similarity=0.174  Sum_probs=105.5

Q ss_pred             cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-chhhcccccc----ccCCCCCCcCCCCCC--
Q 005421          367 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEP--  431 (697)
Q Consensus       367 ~~~ppfF~feNV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~----hNLP~~~R~~~~p~~--  431 (697)
                      ..+|.||++|||..+-..    .+..|...|    |.++..++|+..| .||+|+|.|+    +++...+.  ..|.|  
T Consensus       110 ~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fivg~r~~~~~~~~--~~p~p~~  187 (327)
T d2c7pa1         110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNF--QFPKPFE  187 (327)
T ss_dssp             HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCC--CCCCCCC
T ss_pred             ccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhhheeeeeccCcccccc--ccccccc
Confidence            458999999999998543    455555555    7899999999999 8999999987    34444432  12332  


Q ss_pred             -CCccccccCCCCC-----------------CCCCcCcccccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHH
Q 005421          432 -PMTIQDAIPHTKK-----------------WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILH  493 (697)
Q Consensus       432 -p~ti~d~lp~~~~-----------------~wp~wd~r~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~  493 (697)
                       ..+|+|++.....                 ++.......+.+++.....+..-..        ....-++.....   .
T Consensus       188 ~~~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~t~~~~~---~  256 (327)
T d2c7pa1         188 LNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYS--------TRGIAITLSAYG---G  256 (327)
T ss_dssp             CCCCGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSCCEEEESTTCCTTCEEEE--------TTSCBCCCCSSC---C
T ss_pred             cccccccccccccchhhhcccccccccchhhhhcccchhhhhccccCCCCCccccc--------cccccccccccC---c
Confidence             4677777632111                 1111111112222211110000000        000000000000   0


Q ss_pred             hhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccc
Q 005421          494 RSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  559 (697)
Q Consensus       494 ~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~  559 (697)
                      ......-.+...++.+.|++.|+.||+|||.+|+-  ..+.+++++.+||++.++.+.++...++.
T Consensus       257 ~~~~~~~~~~~~~~~R~lT~rE~arLqgFPd~f~~--~~s~~~~~~~iGNAVp~~v~~~I~~~I~~  320 (327)
T d2c7pa1         257 GIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             STTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cccCCCCcccCCCcCcCCCHHHHHHhCCCCCCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            00000112345678899999999999999999985  56899999999999999888887665543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=98.71  E-value=1.2e-09  Score=107.97  Aligned_cols=189  Identities=14%  Similarity=0.071  Sum_probs=99.3

Q ss_pred             cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-chhhcccccccc----CCCCCCcCCCCCCCC
Q 005421          367 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHN----LPTTNRFHIPPEPPM  433 (697)
Q Consensus       367 ~~~ppfF~feNV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~hN----LP~~~R~~~~p~~p~  433 (697)
                      ..+|.||++|||..+-..    .+..|-.-|    |.+.-.++||..| .||+|+|.||=.    ++..--+|.....+.
T Consensus       100 ~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvPQ~R~R~fiv~~r~~~~~~~~~p~~~~~~~  179 (324)
T d1dcta_         100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (324)
T ss_dssp             HHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCSBCCEEEEEEEEEGGGCCCCCCCCCCSSCC
T ss_pred             hhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccccCchhhceeeEeeecCCCCccccccccccccc
Confidence            457999999999877532    233333333    7899999999999 999999999743    222211121112245


Q ss_pred             ccccccCC--------CCCCCCCcCcccccceeeccCcchhHHHHHHHHHHhhhcCCCc----hhhhh--------HHHH
Q 005421          434 TIQDAIPH--------TKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLS----SQQQR--------DILH  493 (697)
Q Consensus       434 ti~d~lp~--------~~~~wp~wd~r~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~----~~~q~--------~vl~  493 (697)
                      ++.|++..        ..+++........-+.-.... .......  .+...+....+.    ..-+.        .+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (324)
T d1dcta_         180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIG-SYSTIFM--SRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLK  256 (324)
T ss_dssp             CGGGTTGGGTTCCEECBTTTBCCGGGSSSTTCEECCC-CCCHHHH--TSCCCCCTTSCBCCCCSCGGGCCBCTTSCCCEE
T ss_pred             chhhhhhhcccCCccchhhcccccccccccchhhhcc-ccccccc--ccccccccccccccccccccccccccCCCceec
Confidence            66666522        222222111110000000000 0000000  000000000000    00000        0000


Q ss_pred             hhcccceeee-cCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccc
Q 005421          494 RSEKLNLVWV-GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  559 (697)
Q Consensus       494 ~c~~~nlvW~-g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~  559 (697)
                      .++..+-.+. .++.++.|+|.|+.||+|||.+|+- ...+.++++|.+||+..++.+.+++..++.
T Consensus       257 ~~~~~~~~~~~~~~~~R~LT~rE~arLqgFPd~~~f-~~~s~~~~y~~iGNaV~p~v~~~I~~~I~~  322 (324)
T d1dcta_         257 VSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (324)
T ss_dssp             EETTEEECCTTTGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCcCcCCCHHHHHHHCCCCCCCEe-CCCCHHHHHeeEccCccHHHHHHHHHHHHH
Confidence            0011111111 2455789999999999999999983 135889999999999999988888776654

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.6e-09  Score=106.58  Aligned_cols=55  Identities=18%  Similarity=0.316  Sum_probs=48.6

Q ss_pred             ecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421          503 VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  557 (697)
Q Consensus       503 ~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL  557 (697)
                      ..+.+++-|+|.|+.||+|||.+|+=..+++.++++|.+||+..++.+.++++.|
T Consensus       287 ~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k~l  341 (343)
T d1g55a_         287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHHHh
Confidence            4566788999999999999999998777899999999999999998888877655

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.05  E-value=2.8e-06  Score=81.09  Aligned_cols=75  Identities=21%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||||||.|++++++...|..  .|++||+|+.+.+..+.+....+. ...+...|+.++           .+.||
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~-----------~~~fD  111 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF-----------NSRVD  111 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC-----------CCCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh-----------CCcCc
Confidence            3578999999999999998888863  478999999999988876544321 222344555443           25799


Q ss_pred             EEEecCCCC
Q 005421          643 FVICQNSVP  651 (697)
Q Consensus       643 LVIGGpPCQ  651 (697)
                      +|+.-|||.
T Consensus       112 ~Vi~nPP~~  120 (201)
T d1wy7a1         112 IVIMNPPFG  120 (201)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEcCccc
Confidence            999999984

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.79  E-value=2.1e-05  Score=71.39  Aligned_cols=87  Identities=15%  Similarity=0.271  Sum_probs=61.6

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhH
Q 005421          553 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKF  631 (697)
Q Consensus       553 hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I  631 (697)
                      +|+.|.+++. +-+|||||||.|++.+.+-..|.  +.|.+||+|+.+.++++.+....+... ..++.+|+.+.    +
T Consensus         5 ~fn~l~~~~~-g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~----l   77 (152)
T d2esra1           5 IFNMIGPYFN-GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----I   77 (152)
T ss_dssp             HHHHHCSCCC-SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----H
T ss_pred             HHHHHHhhCC-CCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc----c
Confidence            4555666664 66799999999999987777786  358899999999999998876543222 12334454432    1


Q ss_pred             HHhhhccCCccEEEecCC
Q 005421          632 ESLIHKLGSIDFVICQNS  649 (697)
Q Consensus       632 ~~l~~~~g~~DLVIGGpP  649 (697)
                      +   ...+.+|+|+--||
T Consensus        78 ~---~~~~~fDiIf~DPP   92 (152)
T d2esra1          78 D---CLTGRFDLVFLDPP   92 (152)
T ss_dssp             H---HBCSCEEEEEECCS
T ss_pred             c---ccccccceeEechh
Confidence            1   12368999999998

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=1.8e-05  Score=73.42  Aligned_cols=85  Identities=18%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh-
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-  635 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~-  635 (697)
                      |.+..+.+-+|||||||.|++.+.+...|.+   +++||+|+.+.+..+.++...+...      .|.....+.+.... 
T Consensus        35 l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~~------~v~~~~~d~~~~~~~  105 (171)
T d1ws6a1          35 LRLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGA------RVVALPVEVFLPEAK  105 (171)
T ss_dssp             HHHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCC------EEECSCHHHHHHHHH
T ss_pred             hhccccCCCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhcccc------ceeeeehhccccccc
Confidence            3444566778999999999999988888964   4579999999999999887653321      23333433332221 


Q ss_pred             hccCCccEEEecCCC
Q 005421          636 HKLGSIDFVICQNSV  650 (697)
Q Consensus       636 ~~~g~~DLVIGGpPC  650 (697)
                      .....||+|+--||.
T Consensus       106 ~~~~~fD~If~DPPY  120 (171)
T d1ws6a1         106 AQGERFTVAFMAPPY  120 (171)
T ss_dssp             HTTCCEEEEEECCCT
T ss_pred             ccCCccceeEEcccc
Confidence            233679999999983

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.66  E-value=2.7e-05  Score=74.72  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      |-+||||+||.|.+++++...|..  .|++||+|+.+.++.+.+..     ...+..+|+.++.           +.||+
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----------~~fD~  110 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYDT  110 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----------CcceE
Confidence            678999999999999999999964  58999999999988876432     2335678887654           57999


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      |+.=||
T Consensus       111 Vi~NPP  116 (197)
T d1ne2a_         111 WIMNPP  116 (197)
T ss_dssp             EEECCC
T ss_pred             EEeCcc
Confidence            998888

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.65  E-value=3.9e-05  Score=72.02  Aligned_cols=81  Identities=20%  Similarity=0.256  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||||||.|++.+.+-.-|..  .|+.||+|+.+.++++.+....+... ..++.+|+.+.    ++.+......|
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~----l~~~~~~~~~f  114 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA----LEQFYEEKLQF  114 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHHTTCCE
T ss_pred             CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh----hhhhcccCCCc
Confidence            4678999999999999977777864  57899999999999998776543221 12344555432    22232334579


Q ss_pred             cEEEecCC
Q 005421          642 DFVICQNS  649 (697)
Q Consensus       642 DLVIGGpP  649 (697)
                      |+|+--||
T Consensus       115 DlIflDPP  122 (182)
T d2fhpa1         115 DLVLLDPP  122 (182)
T ss_dssp             EEEEECCC
T ss_pred             ceEEechh
Confidence            99999999

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=5.8e-05  Score=76.56  Aligned_cols=85  Identities=20%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||||||.||+++.+.+.|   ..|++||+++.+....+.+....+.....++..|+.++.    ..+....+.||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~----~~~~~~~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL----RRLEKEGERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH----HHHHHTTCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh----hhhHhhhcCCC
Confidence            36789999999999999987644   458899999999999888776443222223345554332    12222336899


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+-=|||-..+
T Consensus       218 ~Vi~DpP~~~~~  229 (318)
T d1wxxa2         218 LVVLDPPAFAKG  229 (318)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEEcCCccccc
Confidence            999999997654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=4.5e-05  Score=71.34  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||||||.|.+.+.+-.-|..  .|++||+|..+.++++.+....+.....++..|+       +.-+......+|
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~-------~~~l~~~~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA-------MSFLAQKGTPHN  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH-------HHHHSSCCCCEE
T ss_pred             chhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecc-------cccccccccccC
Confidence            3468999999999998877777874  4789999999999999876543222222233333       221212335799


Q ss_pred             EEEecCCC
Q 005421          643 FVICQNSV  650 (697)
Q Consensus       643 LVIGGpPC  650 (697)
                      +|+--||.
T Consensus       114 lIf~DPPY  121 (183)
T d2fpoa1         114 IVFVDPPF  121 (183)
T ss_dssp             EEEECCSS
T ss_pred             EEEEcCcc
Confidence            99999994

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=9.1e-05  Score=75.13  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      ...+-+|||||||.||+++.+-+.|.  +.|++||+++.+....+.++..++-.. ..++.+|+.+.    +..+...-.
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~----~~~~~~~~~  216 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE----MEKLQKKGE  216 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHTTC
T ss_pred             cCCCCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh----hHHHHhccC
Confidence            34578999999999999999988886  358999999999999888876443211 12344565432    222222346


Q ss_pred             CccEEEecCCCCccc
Q 005421          640 SIDFVICQNSVPQIP  654 (697)
Q Consensus       640 ~~DLVIGGpPCQ~FS  654 (697)
                      .||+|+--|||-.-+
T Consensus       217 ~fD~Vi~DpP~~~~~  231 (324)
T d2as0a2         217 KFDIVVLDPPAFVQH  231 (324)
T ss_dssp             CEEEEEECCCCSCSS
T ss_pred             CCCchhcCCccccCC
Confidence            899999999996544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.39  E-value=0.0001  Score=72.93  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +..+-+|||+|||+|++++-+-+.|-  .-|++||+|+.+.+.++.+-..++-.+ ..++.+|..++..+         +
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---------~  173 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---------N  173 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---------S
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---------C
Confidence            34578999999999999998777774  248999999999999888765433222 22456787766432         5


Q ss_pred             CccEEEecCCCCc
Q 005421          640 SIDFVICQNSVPQ  652 (697)
Q Consensus       640 ~~DLVIGGpPCQ~  652 (697)
                      .+|.|+=++|+.+
T Consensus       174 ~~D~Ii~~~p~~~  186 (260)
T d2frna1         174 IADRILMGYVVRT  186 (260)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CCCEEEECCCCch
Confidence            6999999999865

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.37  E-value=0.00018  Score=73.03  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=58.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-+|||||||.||+++.....|-  +.|++||+++.+....+.++..+....  .-++.+|+.+.    +..+......
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~----l~~~~~~~~~  217 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  217 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH----HHHHHhhcCC
Confidence            467899999999999998888886  458999999999999988875332211  11344555322    2222233457


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      ||+||-=|||=+
T Consensus       218 fD~Ii~DPP~f~  229 (317)
T d2b78a2         218 YDIIIIDPPSFA  229 (317)
T ss_dssp             EEEEEECCCCC-
T ss_pred             CCEEEEcChhhc
Confidence            999999999543

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00014  Score=58.39  Aligned_cols=40  Identities=23%  Similarity=0.395  Sum_probs=37.2

Q ss_pred             hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      -.++.+++.|||+++.+.|||...|..+++.-+|.||+..
T Consensus        10 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   49 (64)
T d1whca_          10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHCC
Confidence            4589999999999999999999999999999999999855

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.19  E-value=0.00055  Score=69.67  Aligned_cols=82  Identities=16%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||||||.||+++.+-+.|-+   |++||+++.+....+.+...++...  ..++.+|+.+.-    ......-..
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l----~~~~~~~~~  204 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI----QREERRGST  204 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH----HHHHHHTCC
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH----HHHhhcCCC
Confidence            4679999999999999999999963   6799999999998888765432222  124567775442    222223357


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      ||+||-=||+=
T Consensus       205 fD~IilDPP~f  215 (309)
T d2igta1         205 YDIILTDPPKF  215 (309)
T ss_dssp             BSEEEECCCSE
T ss_pred             CCEEEECCCcc
Confidence            99999999953

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00026  Score=56.41  Aligned_cols=46  Identities=22%  Similarity=0.336  Sum_probs=39.3

Q ss_pred             CcCCCCchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           45 NIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        45 ~~assS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ...++.....+.+++.|||++..+.+||+.++. |++.-+++||...
T Consensus         3 ~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~~wL~~~~   48 (63)
T d1wjia_           3 SGSSGVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN   48 (63)
T ss_dssp             SSCCSSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred             CCCCccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence            344444566899999999999999999999986 9999999999953

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.11  E-value=0.00029  Score=65.67  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||||||.|.+.+-.-.-|..  .|+.||.|..+.++++.+....+...  ..+...|+.+.-     ......+.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l-----~~~~~~~~  115 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-----KQPQNQPH  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-----TSCCSSCC
T ss_pred             ccceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccc-----cccccCCc
Confidence            4568999999999987776677874  58899999999999999876543211  112223321110     01112356


Q ss_pred             ccEEEecCC
Q 005421          641 IDFVICQNS  649 (697)
Q Consensus       641 ~DLVIGGpP  649 (697)
                      +|||+--||
T Consensus       116 fDlIFlDPP  124 (183)
T d2ifta1         116 FDVVFLDPP  124 (183)
T ss_dssp             EEEEEECCC
T ss_pred             ccEEEechh
Confidence            999999999

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00046  Score=52.94  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      +++.+++|||+++.+.||+...|..+++.=++.|+..+
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~   42 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC   42 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999864

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00045  Score=55.15  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=36.1

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+.+..|+.|||+++.+.+|+..||.+  ++.-++||++..
T Consensus        19 de~~v~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Lls~~   58 (63)
T d1wgna_          19 ERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            4578999999999999999999999975  799999999863

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00028  Score=51.99  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=32.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      .++.+..|+.|||+++.|.+|+..++.+  ++.=++||++
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~N--~e~A~~~LlS   41 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHhC
Confidence            6678999999999999999999999875  5777777753

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.78  E-value=0.001  Score=49.18  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  175 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~  175 (697)
                      .+..++.|++|||+++++.+|+++|.=+  +++-++||+
T Consensus         4 k~~ai~eL~~MGF~e~~A~~AL~k~~wn--leaAtN~LL   40 (43)
T d2g3qa1           4 KSLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLL   40 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHHH
Confidence            4567899999999999999999999876  566666665

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.70  E-value=0.00075  Score=49.89  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             CCchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           49 SSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        49 sS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      |+.+..|+.+++|||+++-+.+|++.+.- |.+.-+++||.
T Consensus         2 tpk~~ai~eL~~MGF~e~~A~~AL~k~~w-nleaAtN~LLd   41 (43)
T d2g3qa1           2 TPKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD   41 (43)
T ss_dssp             CHHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence            55677899999999999999999999976 78888888874

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00072  Score=51.94  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      .++.+++|||+++.+.||+...|..+++.-+|.||+
T Consensus        15 ~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          15 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            589999999999999999999998899999999986

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.00085  Score=54.93  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=37.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  179 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~  179 (697)
                      ..+.+..|+.|||+++.+..|+..|+.+  ++.-+|||+..+.
T Consensus        29 ~ee~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHhCCC--HHHHHHHHHhCCC
Confidence            4578999999999999999999999996  7999999998763

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00075  Score=53.84  Aligned_cols=38  Identities=24%  Similarity=0.476  Sum_probs=35.1

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      ..+.++++|||+++.+.+|++..|. |++.-+|+||+.+
T Consensus        21 ~~v~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Lls~~   58 (63)
T d1wgna_          21 QCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            3799999999999999999999996 8999999999854

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00086  Score=51.48  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421          140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  176 (697)
Q Consensus       140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a  176 (697)
                      .+..|+.|||+++.+.+|+...|..+ ++.-+++|++
T Consensus        15 ~l~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~~WLl~   50 (51)
T d2cpwa1          15 ALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFS   50 (51)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHc
Confidence            58899999999999999999999644 8999999985

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0016  Score=65.53  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+|||||||+|.+++.|.+.+   +-|++||+++.+....+.+....+-....++.+|+.+.-...    ......+|+
T Consensus       213 ~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~----~~~~~~~d~  285 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ----PWAKNGFDK  285 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS----GGGTTCCSE
T ss_pred             CceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh----hhhhccCce
Confidence            4579999999999999998766   458999999999988887654332222223455554432211    112357899


Q ss_pred             EEecCC
Q 005421          644 VICQNS  649 (697)
Q Consensus       644 VIGGpP  649 (697)
                      ||==||
T Consensus       286 vilDPP  291 (358)
T d1uwva2         286 VLLDPA  291 (358)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            998888

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.47  E-value=0.0028  Score=51.71  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=35.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  177 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~  177 (697)
                      ..+.+..|+.|||+++.+.+|+..||.+  ++.=++||++.
T Consensus        29 d~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~Av~~Lls~   67 (73)
T d1wiva_          29 DQSSVDTLLSFGFAEDVARKALKASGGD--IEKATDWVFNN   67 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHS
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHHHcC
Confidence            4568999999999999999999999974  79999999975

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0018  Score=51.70  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .+++|+.|||+++.+.+|+..+|... ++.-++||++..
T Consensus        12 ~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h~   49 (64)
T d1whca_          12 ALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHE   49 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHHCC
Confidence            68999999999999999999998854 899999999875

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00047  Score=50.76  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      ..++++++|||+++.|.+|++..+- |++.=+|+||+
T Consensus         6 ~~i~~L~~MGF~~~~a~~AL~~~~~-N~e~A~~~LlS   41 (41)
T d1oqya1           6 TMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence            3689999999999999999999985 89999999874

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0021  Score=51.02  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=35.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      ..+.+.+|+.|||+++.+.+|+..++.  .++.-++||+...
T Consensus         9 d~~~v~~L~~MGF~~~~a~~AL~~~~~--~~e~A~~wL~~~~   48 (63)
T d1wjia_           9 DEKALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSN   48 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            346899999999999999999999986  4899999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0019  Score=63.45  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ...+-+|||+.||.|.+++++.+.|.+   |++||+|+.+.+..+.+.... +-...+..+|+.+.        . ..+.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~--------~-~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAA--------L-PFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHH--------G-GGCC
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHc-CCceeEEecccccc--------c-cccc
Confidence            345779999999999999999999963   679999999999888766543 32223344554321        1 2368


Q ss_pred             ccEEEe
Q 005421          641 IDFVIC  646 (697)
Q Consensus       641 ~DLVIG  646 (697)
                      +|+|+.
T Consensus       185 fD~V~a  190 (254)
T d2nxca1         185 FDLLVA  190 (254)
T ss_dssp             EEEEEE
T ss_pred             cchhhh
Confidence            999985

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0033  Score=48.05  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=34.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .+..|+.|||+++.+.+|+...|... ++.=+++|++.+
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~~-ve~A~~Wl~~h~   42 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC   42 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHHcC
Confidence            47889999999999999999998854 899999999885

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.10  E-value=0.005  Score=50.21  Aligned_cols=40  Identities=10%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421           50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   90 (697)
Q Consensus        50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty   90 (697)
                      .....+..+++|||+++.+.+|++..|. |++.=+|+||+.
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~Av~~Lls~   67 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence            3445799999999999999999999987 899999999984

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.83  E-value=0.0077  Score=55.43  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+-+|||++||.|.+++.+.+.+-   -|.++|+|+.+....+.+....+-..  ..+..+|+.+-    +     .-+.
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~----~-----~~~~  119 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V-----KDRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C-----TTSC
T ss_pred             CCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh----h-----ccCC
Confidence            356899999999999999988774   36789999999888887655432222  11233454321    1     1257


Q ss_pred             ccEEEecCCC
Q 005421          641 IDFVICQNSV  650 (697)
Q Consensus       641 ~DLVIGGpPC  650 (697)
                      +|+|+.-+|.
T Consensus       120 fD~Ii~~~p~  129 (194)
T d1dusa_         120 YNKIITNPPI  129 (194)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEEcccE
Confidence            9999987774

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.68  E-value=0.0079  Score=55.09  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~-li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.|++++.+-+.+-   .|++||+++.+.+..+.+....+-... .++.+|+.++        ......+
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--------~~~~~~~  101 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--------LCKIPDI  101 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--------HTTSCCE
T ss_pred             CCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--------ccccCCc
Confidence            356799999999999998877653   478999999999988887665432222 2344554322        1234689


Q ss_pred             cEEEecC
Q 005421          642 DFVICQN  648 (697)
Q Consensus       642 DLVIGGp  648 (697)
                      |+|+.+.
T Consensus       102 D~v~~~~  108 (186)
T d1l3ia_         102 DIAVVGG  108 (186)
T ss_dssp             EEEEESC
T ss_pred             CEEEEeC
Confidence            9887553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.64  E-value=0.014  Score=56.77  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      ++-+||||-||.|.++..|.+.|++   |++||+++...+..+....+.. ........++.+++-..+.......+.+|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~---v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCe---eeeccCchHHHHHHHHHHHhcc-cccccceeeeeeccccccccccCCCCCce
Confidence            3568999999999999999999974   6899999998877666544322 11112233444444333322111235789


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       132 ~v~~  135 (292)
T d1xvaa_         132 AVIC  135 (292)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0087  Score=59.42  Aligned_cols=85  Identities=9%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421          560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      ...++.++|||.||.|-+.+.+...--. ..|+++|+++.|.++.+.+-.+.+-....+..+|+-+       .+  ...
T Consensus       105 ~~~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-------~~--~~~  174 (274)
T d2b3ta1         105 LPEQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-------AL--AGQ  174 (274)
T ss_dssp             SCSSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-------GG--TTC
T ss_pred             hcccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-------cc--CCC
Confidence            3446788999999999888888665433 3578999999999988876544432112234455432       11  114


Q ss_pred             CccEEEecCCCCccc
Q 005421          640 SIDFVICQNSVPQIP  654 (697)
Q Consensus       640 ~~DLVIGGpPCQ~FS  654 (697)
                      .||+|+.-||.-+.+
T Consensus       175 ~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         175 QFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             CEEEEEECCCCBCTT
T ss_pred             ceeEEEecchhhhhh
Confidence            799999999987643

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.55  E-value=0.0043  Score=50.61  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=34.5

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   91 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq   91 (697)
                      -+.+++.|||+++.+.+|++..+. |++.-+|+||..+
T Consensus        32 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Ll~~~   68 (73)
T d1vg5a_          32 QIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS   68 (73)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence            689999999999999999999998 8999999999854

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.0053  Score=51.32  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421           53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   92 (697)
Q Consensus        53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa   92 (697)
                      .++.++++|||++..+.|||...|..+++.-++.|+..+.
T Consensus        31 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~   70 (84)
T d1veka_          31 EIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMD   70 (84)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            3789999999999999999999999999999999998653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.41  E-value=0.012  Score=58.34  Aligned_cols=80  Identities=14%  Similarity=0.002  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChhHHHHH----HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLH----RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~----~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+|+|.+||.||+-+.+.    ..+..-..++++|+|+.+.+..+.+....+.... +..+|....         ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~-~~~~d~~~~---------~~~  186 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMT-LLHQDGLAN---------LLV  186 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCE-EEESCTTSC---------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhh-hhccccccc---------ccc
Confidence            46889999999999988764    2343334578999999988776654433221111 222332111         123


Q ss_pred             CCccEEEecCCCCc
Q 005421          639 GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 g~~DLVIGGpPCQ~  652 (697)
                      +.+|+|+|=||...
T Consensus       187 ~~fD~vi~NPPy~~  200 (328)
T d2f8la1         187 DPVDVVISDLPVGY  200 (328)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             ccccccccCCCCCC
Confidence            57999999999854

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.28  E-value=0.016  Score=54.09  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      ..-+|||+=||.|.++..|.++|++   |++||+++......++.....+. ...+..+|+.++..+         +.||
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~---v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~---------~~fD  107 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---------NEFD  107 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---------SCEE
T ss_pred             CCCEEEEeCCCCCccchhhcccceE---EEEEeeccccccccccccccccc-cchheehhhhhcccc---------cccc
Confidence            3457999999999999999999975   67899999988877775444332 233567888887632         4699


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       108 ~I~~  111 (251)
T d1wzna1         108 AVTM  111 (251)
T ss_dssp             EEEE
T ss_pred             hHhh
Confidence            8884

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.80  E-value=0.015  Score=55.18  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhh
Q 005421          558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      +.+.+.+-+||||-||.||...-+.+.|+.  .|+++|+++.+....+..+...+.. ...+..+|+......       
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-------   89 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------   89 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-------
Confidence            334556789999999999999999999974  4789999999987777655433221 122345676544311       


Q ss_pred             ccCCccEEE
Q 005421          637 KLGSIDFVI  645 (697)
Q Consensus       637 ~~g~~DLVI  645 (697)
                      ..+.||+|+
T Consensus        90 ~~~~fD~V~   98 (252)
T d1ri5a_          90 LGKEFDVIS   98 (252)
T ss_dssp             CSSCEEEEE
T ss_pred             ccccceEEE
Confidence            124688887

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.023  Score=55.94  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=50.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  643 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL  643 (697)
                      +-+||||-||.|.+++-+.++|-  +.|+++|+++.+..+.+....+.......++.+|+.++...        ...+|+
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~--------~~~~D~  105 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKVDV  105 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCEEE
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc--------cccceE
Confidence            45799999999999999999996  45899999998876555433222122222455677766421        247999


Q ss_pred             EEe
Q 005421          644 VIC  646 (697)
Q Consensus       644 VIG  646 (697)
                      |+.
T Consensus       106 Ivs  108 (311)
T d2fyta1         106 IIS  108 (311)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.66  E-value=0.021  Score=53.59  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=55.7

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      ++..-+.+-+|||+=||.|.++..|.++|++   |++||+++......+......+. ...++.+|+.++..        
T Consensus        31 ~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~---v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~--------   98 (246)
T d1y8ca_          31 CVENNLVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------   98 (246)
T ss_dssp             HHTTTCCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------
T ss_pred             HHHhCCCCCeEEEEeCcCCHHHHHHHHhCCc---cEeeccchhhhhhccccccccCc-cceeeccchhhhcc--------
Confidence            3334445568999999999999999999975   57999999987776665443322 23356788887752        


Q ss_pred             ccCCccEEEe
Q 005421          637 KLGSIDFVIC  646 (697)
Q Consensus       637 ~~g~~DLVIG  646 (697)
                       .+.||+|+.
T Consensus        99 -~~~fD~i~~  107 (246)
T d1y8ca_          99 -NRKFDLITC  107 (246)
T ss_dssp             -SCCEEEEEE
T ss_pred             -cccccccce
Confidence             247999883

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.53  E-value=0.029  Score=50.91  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=53.5

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+.+-+||||=||.|.++..|.+.|..   |+++|+++......+....+.+. ....+..|+.++.-        ..
T Consensus        33 ~~l~~~~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~--------~~  100 (226)
T d1ve3a1          33 KYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSF--------ED  100 (226)
T ss_dssp             HSCCSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCS--------CT
T ss_pred             HhcCCCCEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhccccc-cccccccccccccc--------cC
Confidence            33455679999999999999999999864   68999999988777654433322 22234567776642        12


Q ss_pred             CCccEEEe
Q 005421          639 GSIDFVIC  646 (697)
Q Consensus       639 g~~DLVIG  646 (697)
                      +.+|+|+.
T Consensus       101 ~~fD~I~~  108 (226)
T d1ve3a1         101 KTFDYVIF  108 (226)
T ss_dssp             TCEEEEEE
T ss_pred             cCceEEEE
Confidence            57898885

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.36  E-value=0.026  Score=47.00  Aligned_cols=40  Identities=23%  Similarity=0.175  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  178 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q  178 (697)
                      .+.+.+|+.|||+++.+.+|+..-|..+ ++.-++||++.+
T Consensus        30 ~~~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h~   69 (84)
T d1veka_          30 EEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHHcC
Confidence            3578999999999999999999977744 899999999886

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.0075  Score=46.70  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             hhhhhccCCCChHHHHHHHHHhCCC--------CHHHHHHHHH
Q 005421           54 LRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLI   88 (697)
Q Consensus        54 l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~ilE~LL   88 (697)
                      ++.+|..||||..-|.-|++..|=.        ..+.|||.||
T Consensus        12 ~V~~f~~mGF~rdKvI~VLrrlgik~~~~~~~~~~n~ilEELL   54 (55)
T d1ttea1          12 LIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL   54 (55)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCchhHHHHHHHhCcCCCCcccchHHHHHHHHHh
Confidence            7899999999999999999999833        3568999887

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.12  E-value=0.037  Score=50.42  Aligned_cols=73  Identities=21%  Similarity=0.284  Sum_probs=51.7

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421          566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  645 (697)
Q Consensus       566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI  645 (697)
                      +||||=||.|..+..|.+.|++   |++||+++.+....+.+-...+-....+...|+.++..+         +.||+|+
T Consensus        33 rvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------~~fD~I~  100 (198)
T d2i6ga1          33 RTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---------GEYDFIL  100 (198)
T ss_dssp             EEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---------CCEEEEE
T ss_pred             cEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---------ccccEEE
Confidence            8999999999999999999985   578999999988877655433222212334555544421         4689888


Q ss_pred             ecCCC
Q 005421          646 CQNSV  650 (697)
Q Consensus       646 GGpPC  650 (697)
                      .....
T Consensus       101 ~~~~~  105 (198)
T d2i6ga1         101 STVVM  105 (198)
T ss_dssp             EESCG
T ss_pred             Eeeee
Confidence            65533

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.037  Score=54.96  Aligned_cols=72  Identities=19%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +-+||||.||.|.+++-+.++|..  .|+++|.++.+..+ +..-...+... ..++.+|+.++.-.        ...+|
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a-~~~~~~~~~~~~i~~i~~~~~~l~~~--------~~~~D  107 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA-KELVELNGFSDKITLLRGKLEDVHLP--------FPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHH-HHHHHHTTCTTTEEEEESCTTTSCCS--------SSCEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHH-HHHHHHhCccccceEEEeehhhccCc--------cccee
Confidence            467999999999999999999974  58999999865433 22222222222 22455777766421        24799


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       108 ~i~s  111 (328)
T d1g6q1_         108 IIIS  111 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.98  E-value=0.037  Score=54.75  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=48.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      +-+||||.||.|.+++-+.++|-.  .|++||+++.+..+.+.. ...+... ..++.+|+.++..        ....+|
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~-~~n~~~~~v~~~~~~~~~~~~--------~~~~~D  102 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIV-KANKLDHVVTIIKGKVEEVEL--------PVEKVD  102 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHH-HHTTCTTTEEEEESCTTTCCC--------SSSCEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHH-HHhCCccccceEeccHHHccc--------ccceeE
Confidence            456999999999999999999963  478999998765443322 2222222 2244577776642        225799


Q ss_pred             EEEec
Q 005421          643 FVICQ  647 (697)
Q Consensus       643 LVIGG  647 (697)
                      +|+.-
T Consensus       103 ~ivs~  107 (316)
T d1oria_         103 IIISE  107 (316)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99853

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=93.85  E-value=0.047  Score=50.06  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=50.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+||||=||.|.++..+.+.|-+   |.++|+++......+......+.+...+..+|+.++.-        ..+.||
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~--------~~~~fD   83 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF--------TDERFH   83 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS--------CTTCEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhCCE---EEEEECCHHHHhhhhhcccccccccccccccccccccc--------cccccc
Confidence            4678999999999999999999853   68999999877666554333333333356678777641        124688


Q ss_pred             EEE
Q 005421          643 FVI  645 (697)
Q Consensus       643 LVI  645 (697)
                      +|+
T Consensus        84 ~v~   86 (231)
T d1vl5a_          84 IVT   86 (231)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            887

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=93.72  E-value=0.027  Score=52.47  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccC
Q 005421          552 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  627 (697)
Q Consensus       552 ~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt  627 (697)
                      +.++.+..+++.+ +||||=||.|.+...|.+.|.+   |++||+++......+...    ..+..+..+|+.++.
T Consensus        10 ~~~~~~~~~~~~~-~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~----~~~~~~~~~~~~~~~   77 (225)
T d2p7ia1          10 FMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRL----KDGITYIHSRFEDAQ   77 (225)
T ss_dssp             HHHHHHGGGCCSS-CEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHS----CSCEEEEESCGGGCC
T ss_pred             HHHHHhhhhCCCC-cEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhccc----ccccccccccccccc
Confidence            4445556666544 8999999999999999999964   689999999887776532    122234456665543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.024  Score=52.62  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+||||-||.|+++.-|...++  ..|.+||+++......+......+.....++.+|+.++..        ..+.+|
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~--------~~~~fD  129 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD  129 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccccc--------cccccc
Confidence            456899999999999988765554  3478999999988777765443222222345677777652        125688


Q ss_pred             EEEe
Q 005421          643 FVIC  646 (697)
Q Consensus       643 LVIG  646 (697)
                      +|+.
T Consensus       130 ~I~~  133 (222)
T d2ex4a1         130 VIWI  133 (222)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8873

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=93.50  E-value=0.056  Score=50.27  Aligned_cols=77  Identities=13%  Similarity=0.227  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      -+.+||||=||.|.++..+.+.|.+   |.+||+++...+..+.+-...+.....+..+|+.++.-        ..+.||
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~~~---v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD   84 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD   84 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhCCe---EEEEeCChhhhhhhhhhhcccccccccccccccccccc--------cccccc
Confidence            4789999999999999999998853   68999999877666554433222223356677776542        125799


Q ss_pred             EEEecCCC
Q 005421          643 FVICQNSV  650 (697)
Q Consensus       643 LVIGGpPC  650 (697)
                      +|+...-.
T Consensus        85 ~v~~~~~l   92 (234)
T d1xxla_          85 IITCRYAA   92 (234)
T ss_dssp             EEEEESCG
T ss_pred             eeeeecee
Confidence            98874433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=93.31  E-value=0.037  Score=50.82  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=54.7

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421          557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  636 (697)
Q Consensus       557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~  636 (697)
                      ++.+.+.+.+|||+=||.|.+..-|...|.+   |.++|+++...+..+..     . ...++.+|+.++.-        
T Consensus        36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~giD~s~~~l~~a~~~-----~-~~~~~~~~~~~l~~--------   98 (246)
T d2avna1          36 LEEYLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREK-----G-VKNVVEAKAEDLPF--------   98 (246)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHH-----T-CSCEEECCTTSCCS--------
T ss_pred             HHHhcCCCCEEEEECCCCchhcccccccceE---EEEeecccccccccccc-----c-cccccccccccccc--------
Confidence            4556677889999999999999999999974   68899999988877652     1 12245677777642        


Q ss_pred             ccCCccEEEe
Q 005421          637 KLGSIDFVIC  646 (697)
Q Consensus       637 ~~g~~DLVIG  646 (697)
                      ..+.||+|+.
T Consensus        99 ~~~~fD~ii~  108 (246)
T d2avna1          99 PSGAFEAVLA  108 (246)
T ss_dssp             CTTCEEEEEE
T ss_pred             ccccccceee
Confidence            1257998874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.02  E-value=0.049  Score=49.68  Aligned_cols=73  Identities=8%  Similarity=-0.009  Sum_probs=47.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||.+||.|+|.+++.+.-.....+.++|+++.+....         ....++.+|-....         ....+|
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~---------~~~~fd   80 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE---------PGEAFD   80 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC---------CSSCEE
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc---------cccccc
Confidence            456899999999999888865433334588999999763221         11123334432221         235799


Q ss_pred             EEEecCCCCcc
Q 005421          643 FVICQNSVPQI  653 (697)
Q Consensus       643 LVIGGpPCQ~F  653 (697)
                      +|++-||.-..
T Consensus        81 ~ii~npP~~~~   91 (223)
T d2ih2a1          81 LILGNPPYGIV   91 (223)
T ss_dssp             EEEECCCCCCB
T ss_pred             eecccCccccc
Confidence            99999998543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.14  Score=50.51  Aligned_cols=88  Identities=10%  Similarity=0.156  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+-+|||++||.||=+..+..+ + +-..|+|+|+++.-.+.++.+....+-....+...|...+....     ..++.|
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~-~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-----~~~~~f  167 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  167 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             ccceEEecccchhhHHHHHHHHhc-CCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-----ccccee
Confidence            3678999999999977766533 2 11247899999887788887766544333334445655554321     234789


Q ss_pred             cEEEecCCCCccccC
Q 005421          642 DFVICQNSVPQIPNS  656 (697)
Q Consensus       642 DLVIGGpPCQ~FS~a  656 (697)
                      |.|+-=+||.+....
T Consensus       168 D~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         168 HYILLDPSCSGSGMP  182 (293)
T ss_dssp             EEEEECCCCCC----
T ss_pred             eEEeecCcccchhhh
Confidence            999999999997764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=91.95  E-value=0.14  Score=48.95  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .+.+.+|||+=||.|++..-|.+ .|..   |++||+++......+.+....+-.. ..++.+|+.++.-        ..
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~--------~~  133 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------ED  133 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CT
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcE---EEEEeccchhhhhhhcccccccccccccccccccccccc--------cc
Confidence            45678999999999999988865 4753   6899999998877777665443222 2245677776642        12


Q ss_pred             CCccEEEe
Q 005421          639 GSIDFVIC  646 (697)
Q Consensus       639 g~~DLVIG  646 (697)
                      +.||+|+.
T Consensus       134 ~sfD~V~~  141 (282)
T d2o57a1         134 NSYDFIWS  141 (282)
T ss_dssp             TCEEEEEE
T ss_pred             cccchhhc
Confidence            57888874

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=91.27  E-value=0.24  Score=48.71  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=55.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChhhHHHhhhccCCcc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      ..+++|+.||.|...+.+.... . ..|+++|+++.|..+.+.+-.+.+-.... ++.+|..+..       ....+.||
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~-~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~-------~~~~~~fD  181 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFS-D-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIE  181 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS-S-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCC
T ss_pred             ccEEEEeeeeeehhhhhhhhcc-c-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc-------ccccCccc
Confidence            3578999999998877776543 3 34789999999999888765443221111 2234443221       12447899


Q ss_pred             EEEecCCCCccc
Q 005421          643 FVICQNSVPQIP  654 (697)
Q Consensus       643 LVIGGpPCQ~FS  654 (697)
                      +|+.=||.-+-+
T Consensus       182 lIVsNPPYI~~~  193 (271)
T d1nv8a_         182 MILSNPPYVKSS  193 (271)
T ss_dssp             EEEECCCCBCGG
T ss_pred             EEEEcccccCcc
Confidence            999999998754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.22  Score=47.85  Aligned_cols=86  Identities=10%  Similarity=0.018  Sum_probs=50.8

Q ss_pred             CCCCcccccCCCCChhHH--HHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc-ccccccccChhhHHHhhhcc
Q 005421          562 PGGLTMLSVFSGIGGAEV--TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       562 p~~itvLSLFSGiGGlsl--GL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li-~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      ...+++|||-||.|...+  |-+.-+.+   ++++||++.+.+..+.+-...+-..... ...+....--..+..  ...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~---~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~  134 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWY---FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESE  134 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCS
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCcc---ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--ccc
Confidence            456889999999996665  44455654   6899999999998887755432222111 111111111111100  122


Q ss_pred             CCccEEEecCCCCc
Q 005421          639 GSIDFVICQNSVPQ  652 (697)
Q Consensus       639 g~~DLVIGGpPCQ~  652 (697)
                      +.||+|+.=||=-+
T Consensus       135 ~~fD~ivsNPPY~~  148 (250)
T d2h00a1         135 IIYDFCMCNPPFFA  148 (250)
T ss_dssp             CCBSEEEECCCCC-
T ss_pred             CceeEEEecCcccc
Confidence            57999998888654

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.75  E-value=0.096  Score=37.42  Aligned_cols=35  Identities=11%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421           55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   89 (697)
Q Consensus        55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt   89 (697)
                      ...++--||.++||.||+++.|..+.++-+|++-.
T Consensus         6 lqdl~~aG~D~~m~iral~qt~~rsieaaie~isk   40 (41)
T d2cosa1           6 LQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK   40 (41)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHhc
Confidence            35567789999999999999999999999999854

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.34  E-value=0.14  Score=36.64  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=32.8

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  175 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~  175 (697)
                      .+.++.|+.-||.++||..|+++-|... +++-++||.
T Consensus         3 RQMlqdl~~aG~D~~m~iral~qt~~rs-ieaaie~is   39 (41)
T d2cosa1           3 RQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYIS   39 (41)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHh
Confidence            4567889999999999999999999875 899999985

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.13  Score=47.40  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             CCCCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  639 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g  639 (697)
                      +..+.+||||-|+-||.+..+. +.+-. ..++++|+.+..           +.++..++.+||.+.............+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~-~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeecccc-ceEEEeeccccc-----------ccCCceEeecccccchhhhhhhhhccCc
Confidence            5568899999999999997544 45533 457899988742           2345556778887654332221111336


Q ss_pred             CccEEE--ecCCCCcc
Q 005421          640 SIDFVI--CQNSVPQI  653 (697)
Q Consensus       640 ~~DLVI--GGpPCQ~F  653 (697)
                      .+|||+  |+|.|++-
T Consensus        88 ~~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             CEEEEEECCCCCCCSC
T ss_pred             ceeEEEecccchhccc
Confidence            799998  46666553

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=89.85  E-value=0.27  Score=42.80  Aligned_cols=49  Identities=22%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421          554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  607 (697)
Q Consensus       554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~  607 (697)
                      |+.|.  .+.+-+|||+=||.|...+-|-+.|+.   |+++|+++......+..
T Consensus        13 ~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          13 WSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHH
T ss_pred             HHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHH
Confidence            44453  346789999999999999999999985   68899999998888763

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.17  Score=47.04  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  606 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~  606 (697)
                      +.+-+|||+=||.|-.++-|.+.|++   |++||+++.+....+.
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~---V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHS---VVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCc---EEEEeCCHHHHHHHHH
Confidence            35679999999999999999999985   6899999999776654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.64  E-value=0.28  Score=45.80  Aligned_cols=89  Identities=20%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh
Q 005421          550 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT  628 (697)
Q Consensus       550 i~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~  628 (697)
                      ++..+..|.  ...+.+|||+=||.|.++.-+.+ .|=. -.|+++|+++......+......+.....+..+|..+.-.
T Consensus        64 ~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          64 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             hHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence            344444443  34588999999999999988754 3422 2478999999887777766554433333334556554322


Q ss_pred             hhHHHhhhccCCccEEEecCC
Q 005421          629 KKFESLIHKLGSIDFVICQNS  649 (697)
Q Consensus       629 ~~I~~l~~~~g~~DLVIGGpP  649 (697)
                              ..+.||+|+-+..
T Consensus       141 --------~~~~fD~I~~~~~  153 (213)
T d1dl5a1         141 --------EFSPYDVIFVTVG  153 (213)
T ss_dssp             --------GGCCEEEEEECSB
T ss_pred             --------cccchhhhhhhcc
Confidence                    2357998886543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.34  Score=45.10  Aligned_cols=71  Identities=25%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          564 GLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      +.+|||+=||.|++..-+.+ .|..   |++||+++......+......+-.. ..++.+|+.++..+         +.|
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~---------~~f  101 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---------EKC  101 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS---------SCE
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc---------Cce
Confidence            67899999999999988755 5753   6899999988777666544432211 22456777765321         457


Q ss_pred             cEEEe
Q 005421          642 DFVIC  646 (697)
Q Consensus       642 DLVIG  646 (697)
                      |+|+.
T Consensus       102 D~v~~  106 (245)
T d1nkva_         102 DVAAC  106 (245)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            77763

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=88.29  E-value=0.48  Score=44.17  Aligned_cols=84  Identities=18%  Similarity=0.058  Sum_probs=57.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      ..+||+=||.|...+.+.+..=. ..+++||+++...........+.+-....++.+|+..+.. .+     ..+.+|.|
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~-~~-----~~~~~d~v  103 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD-VF-----EPGEVKRV  103 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH-HC-----CTTSCCEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc-cc-----Cchhhhcc
Confidence            45899999999999988877422 3578999999887666555444433334456788876531 11     23678988


Q ss_pred             EecCCCCcccc
Q 005421          645 ICQNSVPQIPN  655 (697)
Q Consensus       645 IGGpPCQ~FS~  655 (697)
                      .=-+|+.-+..
T Consensus       104 ~i~fp~P~~k~  114 (204)
T d2fcaa1         104 YLNFSDPWPKK  114 (204)
T ss_dssp             EEESCCCCCSG
T ss_pred             ccccccccchh
Confidence            88888766543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=87.48  E-value=0.24  Score=47.31  Aligned_cols=75  Identities=16%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||+=||+|.++..|-..++.  .|.+||+++......+....+.  +...++.+|+.+++..        .+.+|
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~fD  160 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP--------PNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC--------SSCEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccC--------CCccc
Confidence            4578999999999999886655553  5789999999888877654321  1122445677666431        25789


Q ss_pred             EEEecCC
Q 005421          643 FVICQNS  649 (697)
Q Consensus       643 LVIGGpP  649 (697)
                      +|+....
T Consensus       161 ~I~~~~v  167 (254)
T d1xtpa_         161 LIVIQWT  167 (254)
T ss_dssp             EEEEESC
T ss_pred             eEEeecc
Confidence            8885443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=87.25  E-value=0.21  Score=47.40  Aligned_cols=44  Identities=16%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      +.+-+|||.|+|.|...++.+++|-.   .+++|+++....+.+..+
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~---~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCc---EEEEeCCHHHHHHHHHHH
Confidence            34567999999999999999999954   688999998887776533

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.13  E-value=0.18  Score=38.77  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=25.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421          138 IEKRASLLMMNFSVNEVDFALDKLGKDA  165 (697)
Q Consensus       138 ~~~~~~lv~MGF~eeev~~AI~~~G~da  165 (697)
                      .+.+.+|+.||||.+.|..++.|+|-..
T Consensus        10 ~~~V~~f~~mGF~rdKvI~VLrrlgik~   37 (55)
T d1ttea1          10 HDLIDEFESQGFEKDKIVEVLRRLGVKS   37 (55)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHhCcCC
Confidence            4578999999999999999999999863

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.77  E-value=0.73  Score=43.70  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=54.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      ..|.+||||-||.|++..-|.+. |-. -.|++||+++...+.++..-..  ......+..|......     +......
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~~-----~~~~~~~  143 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE-----YRALVPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG-----GTTTCCC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCccc-----ccccccc
Confidence            45899999999999999888753 322 2489999999998887764322  1122223455544332     1112367


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      +|+|+--.||..
T Consensus       144 vD~i~~d~~~~~  155 (227)
T d1g8aa_         144 VDVIFEDVAQPT  155 (227)
T ss_dssp             EEEEEECCCSTT
T ss_pred             eEEEEEEccccc
Confidence            899998888765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.27  E-value=0.58  Score=45.19  Aligned_cols=79  Identities=20%  Similarity=0.151  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC-ccccccccccChhhHHHhhhccCC
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~-li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+|||+=||.|++++.|-++ |-. -.|+++|+++...+..+.++........ .+..+|+.+.-.         -+.
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~---------~~~  154 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---------DQM  154 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------SCC
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc---------cce
Confidence            4789999999999999998865 422 2578999999988887777654322121 234567655422         146


Q ss_pred             ccEEEecCCCC
Q 005421          641 IDFVICQNSVP  651 (697)
Q Consensus       641 ~DLVIGGpPCQ  651 (697)
                      ||.|+=..|..
T Consensus       155 fD~V~ld~p~p  165 (250)
T d1yb2a1         155 YDAVIADIPDP  165 (250)
T ss_dssp             EEEEEECCSCG
T ss_pred             eeeeeecCCch
Confidence            89888666643

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.54  Score=44.89  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=49.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||+=||.|.+...|.+++-.. .++++|+++.+.+..+..     .+...+..+|+.++.-.        -+.||
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~--------~~sfD  149 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS--------DTSMD  149 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC--------TTCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCC-EEEEecchHhhhhhhhcc-----cccccceeeehhhccCC--------CCCEE
Confidence            46789999999999999999886543 468999999987766542     12233456788877532        24688


Q ss_pred             EEE
Q 005421          643 FVI  645 (697)
Q Consensus       643 LVI  645 (697)
                      +|+
T Consensus       150 ~v~  152 (268)
T d1p91a_         150 AII  152 (268)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            887

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.33  E-value=1  Score=43.88  Aligned_cols=86  Identities=10%  Similarity=0.099  Sum_probs=58.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+.+|||++||-||=+..+..++-+ -.|+|+|+++.-.+.++..-...+.....+...|-      ..... ...+.||
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~------~~~~~-~~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR------YPSQW-CGEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT------CTHHH-HTTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeecccc------ccchh-ccccccc
Confidence            3678999999999999998887755 35789999998888887765444322111111111      11111 1235799


Q ss_pred             EEEecCCCCccccC
Q 005421          643 FVICQNSVPQIPNS  656 (697)
Q Consensus       643 LVIGGpPCQ~FS~a  656 (697)
                      .|.-=+||.+....
T Consensus       174 ~IL~DaPCSg~G~~  187 (284)
T d1sqga2         174 RILLDAPCSATGVI  187 (284)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeccccccCcc
Confidence            99999999998765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.03  E-value=0.47  Score=44.19  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      .+=.|||.|+|.|...++.+++|-+   .+++|+++....+.+...
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~lgR~---~ig~El~~~y~~~a~~Ri  249 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQL  249 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHH
T ss_pred             CCCEEEecCCCCcHHHHHHHHhCCe---EEEEeCCHHHHHHHHHHH
Confidence            3456999999999999999999954   688999999887776543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.03  E-value=1.6  Score=43.03  Aligned_cols=86  Identities=10%  Similarity=0.023  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  642 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D  642 (697)
                      .+-+|||++||.||=+..+..+--+--.++++|+++.-.+.++..-...+.....+...|-..+.        ...+.||
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~--------~~~~~fD  187 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG--------ELNVEFD  187 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG--------GGCCCEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc--------ccccccc
Confidence            46789999999999877775443222247899999887777766544443322222233333221        1236799


Q ss_pred             EEEecCCCCccccC
Q 005421          643 FVICQNSVPQIPNS  656 (697)
Q Consensus       643 LVIGGpPCQ~FS~a  656 (697)
                      .|.-=+||.+-...
T Consensus       188 ~ILvDaPCSg~G~~  201 (313)
T d1ixka_         188 KILLDAPCTGSGTI  201 (313)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEccccccCCce
Confidence            99999999987654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=82.84  E-value=0.55  Score=43.11  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  606 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~  606 (697)
                      .+=+|||.|+|.|...++.+++|-   ..+++|+++....+.+.
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANF  252 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHH
Confidence            355799999999999999999995   46889999887766544

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=82.78  E-value=0.69  Score=44.37  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  638 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~  638 (697)
                      .++.+|||+=||.|.+..-|...   |.   .|.++|+++......+......+. ...+..+|+.++..         .
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~---------~   92 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL---------N   92 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---------S
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccc-cccccccccccccc---------c
Confidence            45789999999999988777653   33   368899999987777665443321 22245677776642         1


Q ss_pred             CCccEEEecCCCC
Q 005421          639 GSIDFVICQNSVP  651 (697)
Q Consensus       639 g~~DLVIGGpPCQ  651 (697)
                      +.+|+|+...-++
T Consensus        93 ~~fD~v~~~~~l~  105 (281)
T d2gh1a1          93 DKYDIAICHAFLL  105 (281)
T ss_dssp             SCEEEEEEESCGG
T ss_pred             CCceEEEEehhhh
Confidence            4699998665443

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=2.2  Score=44.68  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=48.6

Q ss_pred             CCcccccCCCCChhHHHHHHc----CC-------------ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccccccccc
Q 005421          564 GLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL  626 (697)
Q Consensus       564 ~itvLSLFSGiGGlslGL~~a----Gf-------------~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~L  626 (697)
                      +.+|+|-+||.|||-++..+.    +-             ....++++|+++.+.++.+.+.--+..... +..++....
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~-i~~~~~~~~  243 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGAIRL  243 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBSEEE
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccc-ccccchhhh
Confidence            578999999999997765321    10             012478999999988776654322222222 222222111


Q ss_pred             ChhhHHHhhhccCCccEEEecCCCCc
Q 005421          627 TTKKFESLIHKLGSIDFVICQNSVPQ  652 (697)
Q Consensus       627 t~~~I~~l~~~~g~~DLVIGGpPCQ~  652 (697)
                      .. .+..-......||+|+|=||=..
T Consensus       244 ~~-~l~~d~~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         244 GN-TLGSDGENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             SC-TTSHHHHTSCCEEEEEECCCCTT
T ss_pred             hh-hhhhcccccccceeEEecCCccc
Confidence            11 01000113367999999999643

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.74  E-value=0.59  Score=47.76  Aligned_cols=45  Identities=18%  Similarity=0.078  Sum_probs=37.0

Q ss_pred             CCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421          563 GGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  609 (697)
Q Consensus       563 ~~itvLSLFSGiGGlsl-GL~~aGf~~k~VvaVEid~~ar~t~~~~~~  609 (697)
                      ++.+|||+|||.|+.++ ....+|.  +.|+++|+|+.+....+.+-.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~   90 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVM   90 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHH
Confidence            35789999999999988 4455675  468999999999999988654

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.01  E-value=0.87  Score=31.52  Aligned_cols=26  Identities=38%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421          139 EKRASLLMMNFSVNEVDFALDKLGKD  164 (697)
Q Consensus       139 ~~~~~lv~MGF~eeev~~AI~~~G~d  164 (697)
                      .++.+|+.|||.+-|+..|++...-|
T Consensus         4 skiaqlvsmgfdpleaaqaldaangd   29 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANGD   29 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcCc
Confidence            36899999999999999999876544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.00  E-value=1.5  Score=40.68  Aligned_cols=84  Identities=11%  Similarity=0.010  Sum_probs=53.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421          561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  640 (697)
Q Consensus       561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~  640 (697)
                      .+.+.+||||=||.|+...-+...-=+ ..|++||+++...+.++..-...  .....+..|+......     ...+..
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~-----~~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY-----SGIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-----TTTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCcccc-----ccccce
Confidence            445889999999999999888764212 35899999999888776543322  1222345666543321     112356


Q ss_pred             ccEEEecCCCCc
Q 005421          641 IDFVICQNSVPQ  652 (697)
Q Consensus       641 ~DLVIGGpPCQ~  652 (697)
                      +|+|..-.++..
T Consensus       126 vd~v~~~~~~~~  137 (209)
T d1nt2a_         126 VDLIYQDIAQKN  137 (209)
T ss_dssp             EEEEEECCCSTT
T ss_pred             EEEEEecccChh
Confidence            788876655543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.00  E-value=0.56  Score=43.60  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421          562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  610 (697)
Q Consensus       562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~  610 (697)
                      +.+.+|||+=||.|+.+..+.+.+.  ..|++||+++...+..+.+...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhh
Confidence            4678999999999999998888763  4578999999998888876543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.92  E-value=1.3  Score=41.03  Aligned_cols=82  Identities=20%  Similarity=0.059  Sum_probs=54.9

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421          565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  644 (697)
Q Consensus       565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV  644 (697)
                      ..+||+=||-|.+.+.+.+..=. ..+++||+++...........+.+-....+..+|+.++.. .+     ..+.+|.|
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~-~~-----~~~~~~~i  105 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEIDRL  105 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCSEE
T ss_pred             CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh-hc-----cCCceehh
Confidence            45999999999999998877433 3578999998755544444444333334456788877642 22     23578988


Q ss_pred             EecCCCCcc
Q 005421          645 ICQNSVPQI  653 (697)
Q Consensus       645 IGGpPCQ~F  653 (697)
                      .--+|..=+
T Consensus       106 ~i~fPdPw~  114 (204)
T d1yzha1         106 YLNFSDPWP  114 (204)
T ss_dssp             EEESCCCCC
T ss_pred             ccccccccc
Confidence            887876544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.75  E-value=1.1  Score=40.83  Aligned_cols=48  Identities=13%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHH----cCCceeeEEEeeCCHHHHHHHHHHH
Q 005421          558 KSMFPGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWW  608 (697)
Q Consensus       558 K~~fp~~itvLSLFSGiGGlslGL~~----aGf~~k~VvaVEid~~ar~t~~~~~  608 (697)
                      +.+.+.+-+||||=||.|.++..+.+    .|.   -|.++|+++...+..+..-
T Consensus        34 ~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_          34 ERFVTADSNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHh
Confidence            44455677899999999999988875    354   3688999999877776543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=81.48  E-value=0.86  Score=46.41  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=46.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc----CCc--------eeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccCh
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRL----GIK--------LKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  628 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~a----Gf~--------~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~  628 (697)
                      .+.+|+|-+||.|||-+.+.+.    +..        -..++++|+++.+.++.+.+..-+...  ...+..+|.-.-  
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence            3578999999999998776431    100        123789999999887766533222111  011222222110  


Q ss_pred             hhHHHhhhccCCccEEEecCCC
Q 005421          629 KKFESLIHKLGSIDFVICQNSV  650 (697)
Q Consensus       629 ~~I~~l~~~~g~~DLVIGGpPC  650 (697)
                             .....+|+|+|=||=
T Consensus       240 -------~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         240 -------EPSTLVDVILANPPF  254 (425)
T ss_dssp             -------CCSSCEEEEEECCCS
T ss_pred             -------hcccccceEEecCCC
Confidence                   123579999999995

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=80.72  E-value=1.4  Score=42.63  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421          563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  641 (697)
Q Consensus       563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~  641 (697)
                      .+.+|||+-||.|+++..|-++.-+--.|+++|+++...+..+.+....+... ..+..+|+..-.         ....+
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~---------~~~~~  173 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKDV  173 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCSE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc---------cccce
Confidence            47899999999999999997652221247899999988887777665543211 112334442211         12468


Q ss_pred             cEEEecCCCC
Q 005421          642 DFVICQNSVP  651 (697)
Q Consensus       642 DLVIGGpPCQ  651 (697)
                      |.|+-.-|..
T Consensus       174 D~V~~d~p~p  183 (266)
T d1o54a_         174 DALFLDVPDP  183 (266)
T ss_dssp             EEEEECCSCG
T ss_pred             eeeEecCCCH
Confidence            8887776654