Citrus Sinensis ID: 005422

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
MGYNNSRSVRFQDDLELSEKPPAMNGDGVIKFKYKFDGKQVPEKEVSGKPVKSLKAKVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAKENIPAEPDSPQPPSGLSIYAARLSASTRRANKHSRSDSGVVTTLQKPAEPDFSVDEE
cccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHEEEEccEEEEEcccccEEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHcEEccccccccccEEEEcHHHHHHHHHHccHHHHHHHccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEEccccccEEEEEEEEEEEEEEEccccccEEEEEEEccccEEccccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHccccHHHHHHHccccccccccccccccccccccccccc
cccccccEEEEcccccccccccccccccccccEEEEcccEEcccccEEEEEccccccccccccccccccccccEcccccHHHHHHHHHHHHHHHHHHHHccHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccEccccEEEccHHHHHHHHHHcccEHHHHHHccccHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHHccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHcccccccccEEEEEcccHHEEEEEEEccEEEEEcccccccEEEEEEEccccccHHHHHHHHcccccccccccccccEEEEEHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
mgynnsrsvrfqddlelsekppamngdgvikfkykfdgkqvpekevsgkpvkslKAKVLSRVFSEDYERVKKkildprgpairRWNKIFLVACLVSLfvdplffylpvvrhevcidigIPLEVILTIIRTLGDAFYIIQIYIRFRtayvapssrvfgrgelvidpsKIASRYLkkgfwidfvaalplpqvLIWFiipnlrgstmrnTKNVLRFIIIFQYlprlflifplSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRsvcnsekpscqygyfdchkvedpnreswfkfsnitslcdpnnvssykfgiyadaitfdvttapffnKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTeqwmhhrqlppelrqsvrkydqykwvatrgvdeevllkglptdlrrDIKRHICLDlvrrvplfdqMDERMLDAICERLkpalctegtflvregdpvnEMLFIIRGHLdsyttnggrtgffnscrigpgdfcgeelltwaldprpsvilpsstrtvkSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRakenipaepdspqppsglSIYAARLSASTrrankhsrsdsgvvttlqkpaepdfsvdee
mgynnsrsvrfqddlelsekppamngdGVIKFKYKFDGkqvpekevsgkpvkslkakvlsrvfsedyervkkkildprgpairrWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVapssrvfgrgelvidPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTdteqwmhhrqlppelrqsvrkYDQYKWvatrgvdeevllkglptdlrrdikrhicldlvrrvplfdQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDprpsvilpsstrtvkSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFrfyshqwrtWAACFIQAAWRRYKKRKEAAElrakenipaepdspqppsGLSIYAARLSASTrrankhsrsdsgvvttlqkpaepdfsvdee
MGYNNSRSVRFQDDLELSEKPPAMNGDGVIKFKYKFDGKQVPEKEVSGKPVKSLKAKVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQaawrrykkrkeaaelrakeNIPAEPDSPQPPSGLSIYAARLSASTRRANKHSRSDSGVVTTLQKPAEPDFSVDEE
****************************VIKFKYKF********************KVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYK********************************************************************
*****SR**************************************************************VKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWAL************RTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFI****************************************************************************
*********RFQDDLELSEKPPAMNGDGVIKFKYKFDGKQ**************KAKVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAKENI**********SGLSIYAARLS*******************LQKPAEPDFSVDEE
****************************VIKFKYKFDGKQVPEKEVSGKPVKSLKAKVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAK************PSGLSIYAARLSASTRRANKH************************
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MGYNNSRSVRFQDDLELSEKPPAMNGDGVIKFKYKFDGKQVPEKEVSGKPVKSLKAKVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAKENIPAEPDSPQPPSGLSIYAARLSASTRRANKHSRSDSGVVTTLQKPAEPDFSVDEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query697 2.2.26 [Sep-21-2011]
Q9SL29678 Putative cyclic nucleotid yes no 0.969 0.997 0.758 0.0
Q9SJA4726 Probable cyclic nucleotid no no 0.988 0.949 0.545 0.0
Q8L7Z0720 Probable cyclic nucleotid no no 0.896 0.868 0.567 0.0
Q9M0A4733 Putative cyclic nucleotid no no 0.921 0.875 0.559 0.0
Q9LEQ3706 Putative cyclic nucleotid no no 0.899 0.888 0.528 0.0
O65717716 Cyclic nucleotide-gated i no no 0.991 0.965 0.522 0.0
O82226747 Probable cyclic nucleotid no no 0.923 0.862 0.544 0.0
Q9SU64705 Probable cyclic nucleotid no no 0.816 0.807 0.584 0.0
Q8RWS9717 Probable cyclic nucleotid no no 0.921 0.895 0.550 0.0
Q9S9N5738 Putative cyclic nucleotid no no 0.929 0.878 0.525 0.0
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function desciption
 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/697 (75%), Positives = 594/697 (85%), Gaps = 21/697 (3%)

Query: 1   MGYNNSRSVRFQDDLELSEKPPAMNGDGVIKFKYKFDGKQVPEKEVSGKPVKSLKAKVLS 60
           MGY NSRSVRFQ+D E+        G+  +K K+K +G Q+   ++  K  K LKAKVLS
Sbjct: 1   MGYGNSRSVRFQEDQEVVH-----GGESGVKLKFKINGTQINNVKMMSKG-KFLKAKVLS 54

Query: 61  RVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIP 120
           RVFSED ERVK KILDPRG  IRRWNKIFL+ACLVSLFVDPLFF+LPV+R+E CI IG+ 
Sbjct: 55  RVFSEDLERVKTKILDPRGQTIRRWNKIFLIACLVSLFVDPLFFFLPVMRNEACITIGVR 114

Query: 121 LEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWID 180
           LEV+LT+IR+L DAFYI QI IRFRTAY+AP SRVFGRGELVID  KIA RYL K FWI 
Sbjct: 115 LEVVLTLIRSLADAFYIAQILIRFRTAYIAPPSRVFGRGELVIDSRKIAWRYLHKSFWIH 174

Query: 181 FVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVV 240
            VAALPLPQVLIW IIPNLRGS M NTKNVLRFIIIFQY+PR+FLIFPLS+QII ATGVV
Sbjct: 175 LVAALPLPQVLIWIIIPNLRGSPMTNTKNVLRFIIIFQYVPRMFLIFPLSRQIIKATGVV 234

Query: 241 TETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVE 300
           TETAWAGAAYNL+L+MLASHVLGACWYLL++ERQEACWR  CN EK  CQY +F+C ++E
Sbjct: 235 TETAWAGAAYNLMLYMLASHVLGACWYLLAVERQEACWRHACNIEKQICQYRFFECRRLE 294

Query: 301 DPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSS 360
           DP R SWF++SNIT++C P +   Y+FGI+ DA+T  VT++ F NKYFYCLWWGLKNLSS
Sbjct: 295 DPQRNSWFEWSNITTICKPAS-KFYEFGIFGDAVTSTVTSSKFINKYFYCLWWGLKNLSS 353

Query: 361 VGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWM 420
           +GQNLATSTY GEI+FAIIIATLGLVLFALLIGNMQTYLQSTT+RLEEWRI+RTDTEQWM
Sbjct: 354 LGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTEQWM 413

Query: 421 HHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFD 480
           HHRQLPPELRQ+VRKYDQYKW+ATRGVDEE LL  LP DLRRDIKRH+C DLVRRVPLFD
Sbjct: 414 HHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFD 473

Query: 481 QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCR 540
           QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSC 
Sbjct: 474 QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCL 533

Query: 541 IGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSK 600
           IGPGDFCGEELLTWALDPRP VILPSSTRTVK+I EVEAFAL+A+DL+FVASQFRRLH+K
Sbjct: 534 IGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFRRLHTK 593

Query: 601 QLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAKENIPAEPDSPQPPSGLSIYA 660
           QLRHKFRFYSHQWRTWAACFIQAAWRR++KRK   ELRAKE      ++           
Sbjct: 594 QLRHKFRFYSHQWRTWAACFIQAAWRRHRKRKYKTELRAKEEFHYRFEAA---------T 644

Query: 661 ARLSASTRRANKHSR--SDSGVVTTLQKPAEPDFSVD 695
           ARL+ +     K++R  SDSG+++++QKP EPDFS +
Sbjct: 645 ARLAVN---GGKYTRSGSDSGMMSSIQKPVEPDFSSE 678
Putative cyclic nucleotide-gated ion channel.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q9LEQ3|CNG18_ARATH Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=3 SV=1 Back     alignment and function description
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
225435347713 PREDICTED: putative cyclic nucleotide-ga 0.997 0.974 0.818 0.0
449456140720 PREDICTED: putative cyclic nucleotide-ga 0.995 0.963 0.792 0.0
224106780745 predicted protein [Populus trichocarpa] 0.997 0.932 0.768 0.0
297746274697 unnamed protein product [Vitis vinifera] 0.925 0.925 0.838 0.0
356547171 803 PREDICTED: putative cyclic nucleotide-ga 0.944 0.819 0.767 0.0
356541918 813 PREDICTED: putative cyclic nucleotide-ga 0.967 0.829 0.775 0.0
356544646692 PREDICTED: putative cyclic nucleotide-ga 0.989 0.997 0.767 0.0
15226370678 cyclic nucleotide-gated channel 15 [Arab 0.969 0.997 0.758 0.0
297826113678 ATCNGC15 [Arabidopsis lyrata subsp. lyra 0.969 0.997 0.753 0.0
147834995650 hypothetical protein VITISV_037545 [Viti 0.916 0.983 0.748 0.0
>gi|225435347|ref|XP_002282455.1| PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1172 bits (3033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/715 (81%), Positives = 640/715 (89%), Gaps = 20/715 (2%)

Query: 1   MGYNNSRSVRFQDDLELSEKPPAMNGDGVIKFKYKFDGKQVPE-------KEVSGKPVKS 53
           M Y NSRSV+FQDDLEL+ K PA NGDG IK KYK DG Q+ E       KEVSGK  +S
Sbjct: 1   MAYENSRSVKFQDDLELA-KFPATNGDGKIKMKYKIDGTQIQEASYKKAGKEVSGKSGRS 59

Query: 54  LKAKVLSRVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEV 113
           LKAKVLSRVFSEDYERVK+KILDPRG +IRRWNKIFLVACL+SLFVDPLFFYLP VR +V
Sbjct: 60  LKAKVLSRVFSEDYERVKQKILDPRGKSIRRWNKIFLVACLISLFVDPLFFYLPDVRDKV 119

Query: 114 CIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYL 173
           C+DI IPLEV+LTIIR++ D FY+IQI++RFRTAYVAPSSRVFGRGELVID SKIA RYL
Sbjct: 120 CMDIEIPLEVVLTIIRSIADIFYMIQIFVRFRTAYVAPSSRVFGRGELVIDTSKIALRYL 179

Query: 174 KKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQI 233
            KGFWID +AALPLPQVLIW IIPNLRGSTM NTKN+LRFI+I QYLPRL+LIFPLS QI
Sbjct: 180 GKGFWIDLIAALPLPQVLIWIIIPNLRGSTMTNTKNMLRFILICQYLPRLYLIFPLSCQI 239

Query: 234 INATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGY 293
           + ATGVVTETAWAGAAYNL+L+MLASHVLGACWYLLSIERQEACWR+VCN EK SCQ GY
Sbjct: 240 VKATGVVTETAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRTVCNLEKSSCQDGY 299

Query: 294 FDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWW 353
           FDCHKV+DP RE+WFK SN+T LCDPNN + Y+FGIYAD++  +VT++ FF KYFYCLWW
Sbjct: 300 FDCHKVKDPGREAWFKSSNVTKLCDPNN-TFYQFGIYADSVISEVTSSAFFEKYFYCLWW 358

Query: 354 GLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKR 413
           GL+NLSS+GQNL+TSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTT+RLEEWRIKR
Sbjct: 359 GLRNLSSLGQNLSTSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTVRLEEWRIKR 418

Query: 414 TDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLV 473
           TDTEQWMHHRQLP EL+QSVRKYDQYKWVATRGVDEE LLKGLP DLRRDIKRH+C DLV
Sbjct: 419 TDTEQWMHHRQLPAELKQSVRKYDQYKWVATRGVDEEALLKGLPMDLRRDIKRHLCFDLV 478

Query: 474 RRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRT 533
           RRVPLFDQMDERMLDAICERLKPAL TEGTFLVREGDPVNEMLF+IRG+LDSYTTNGGRT
Sbjct: 479 RRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFVIRGNLDSYTTNGGRT 538

Query: 534 GFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQ 593
           GFFNSCRIGPGDFCGEELLTWAL+PRPS+ILPSSTRTVKSISEVEAFAL A+DLKFVASQ
Sbjct: 539 GFFNSCRIGPGDFCGEELLTWALEPRPSIILPSSTRTVKSISEVEAFALIAEDLKFVASQ 598

Query: 594 FRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAKEN-IPAEPDS--- 649
           FRRLHSKQLRHKFRFYS  WRTWAACFIQAAWRR+K+RKEAAEL+A+E+ + AEP     
Sbjct: 599 FRRLHSKQLRHKFRFYSPHWRTWAACFIQAAWRRFKRRKEAAELKAREHPVAAEPQPSFD 658

Query: 650 ------PQPPSGLSIYAARLSASTRRAN-KHSRSDSGVVTTLQKPAEPDFSVDEE 697
                 P P SGL++YAARL+AS RR   KHS SDS VV++LQKPAEPDFSVDEE
Sbjct: 659 RFDVVMPAPGSGLAVYAARLAASARRGPLKHSGSDSSVVSSLQKPAEPDFSVDEE 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449456140|ref|XP_004145808.1| PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Cucumis sativus] gi|449516804|ref|XP_004165436.1| PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224106780|ref|XP_002314283.1| predicted protein [Populus trichocarpa] gi|222850691|gb|EEE88238.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297746274|emb|CBI16330.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547171|ref|XP_003541990.1| PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356541918|ref|XP_003539419.1| PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356544646|ref|XP_003540759.1| PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Glycine max] Back     alignment and taxonomy information
>gi|15226370|ref|NP_180393.1| cyclic nucleotide-gated channel 15 [Arabidopsis thaliana] gi|38503241|sp|Q9SL29.1|CNG15_ARATH RecName: Full=Putative cyclic nucleotide-gated ion channel 15; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 15 gi|4803955|gb|AAD29827.1| putative cyclic nucleotide and calmodulin-regulated ion channel protein [Arabidopsis thaliana] gi|330253003|gb|AEC08097.1| cyclic nucleotide-gated channel 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297826113|ref|XP_002880939.1| ATCNGC15 [Arabidopsis lyrata subsp. lyrata] gi|297326778|gb|EFH57198.1| ATCNGC15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147834995|emb|CAN61379.1| hypothetical protein VITISV_037545 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.969 0.997 0.741 2.8e-279
TAIR|locus:2046703726 CNGC14 "cyclic nucleotide-gate 0.885 0.849 0.587 6.2e-205
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.789 0.763 0.612 1.7e-202
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.921 0.875 0.541 2.8e-189
TAIR|locus:2185510706 CNGC18 "AT5G14870" [Arabidopsi 0.791 0.781 0.570 1.5e-188
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.991 0.965 0.511 3.8e-188
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.921 0.895 0.535 5.9e-187
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.921 0.859 0.530 5.9e-187
TAIR|locus:2097860705 CNGC16 "cyclic nucleotide-gate 0.794 0.785 0.578 6.4e-186
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.830 0.784 0.563 6e-185
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2684 (949.9 bits), Expect = 2.8e-279, P = 2.8e-279
 Identities = 514/693 (74%), Positives = 576/693 (83%)

Query:     1 MGYNNSRSVRFQDDLELSEKPPAMNGDGVIKFKYKFDGKQVPEKEVSGKPVKSLKAKVLS 60
             MGY NSRSVRFQ+D E+        G+  +K K+K +G Q+   ++  K  K LKAKVLS
Sbjct:     1 MGYGNSRSVRFQEDQEVVH-----GGESGVKLKFKINGTQINNVKMMSKG-KFLKAKVLS 54

Query:    61 RVFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIP 120
             RVFSED ERVK KILDPRG  IRRWNKIFL+ACLVSLFVDPLFF+LPV+R+E CI IG+ 
Sbjct:    55 RVFSEDLERVKTKILDPRGQTIRRWNKIFLIACLVSLFVDPLFFFLPVMRNEACITIGVR 114

Query:   121 LEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWID 180
             LEV+LT+IR+L DAFYI QI IRFRTAY+AP SRVFGRGELVID  KIA RYL K FWI 
Sbjct:   115 LEVVLTLIRSLADAFYIAQILIRFRTAYIAPPSRVFGRGELVIDSRKIAWRYLHKSFWIH 174

Query:   181 FVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVV 240
              VAALPLPQVLIW IIPNLRGS M NTKNVLRFIIIFQY+PR+FLIFPLS+QII ATGVV
Sbjct:   175 LVAALPLPQVLIWIIIPNLRGSPMTNTKNVLRFIIIFQYVPRMFLIFPLSRQIIKATGVV 234

Query:   241 TETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVE 300
             TETAWAGAAYNL+L+MLASHVLGACWYLL++ERQEACWR  CN EK  CQY +F+C ++E
Sbjct:   235 TETAWAGAAYNLMLYMLASHVLGACWYLLAVERQEACWRHACNIEKQICQYRFFECRRLE 294

Query:   301 DPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSS 360
             DP R SWF++SNIT++C P +   Y+FGI+ DA+T  VT++ F NKYFYCLWWGLKNLSS
Sbjct:   295 DPQRNSWFEWSNITTICKPAS-KFYEFGIFGDAVTSTVTSSKFINKYFYCLWWGLKNLSS 353

Query:   361 VGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWM 420
             +GQNLATSTY GEI+FAIIIATLGLVLFALLIGNMQTYLQSTT+RLEEWRI+RTDTEQWM
Sbjct:   354 LGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTEQWM 413

Query:   421 HHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFD 480
             HHRQLPPELRQ+VRKYDQYKW+ATRGVDEE LL  LP DLRRDIKRH+C DLVRRVPLFD
Sbjct:   414 HHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFD 473

Query:   481 QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCR 540
             QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSC 
Sbjct:   474 QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCL 533

Query:   541 IGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSK 600
             IGPGDFCGEELLTWALDPRP VILPSSTRTVK+I EVEAFAL+A+DL+FVASQFRRLH+K
Sbjct:   534 IGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFRRLHTK 593

Query:   601 QLRHKFRFYSHQWRTWAACFIQXXXXXXXXXXXXXXXXXXXNIPAEPDSPQPPSGLSIYA 660
             QLRHKFRFYSHQWRTWAACFIQ                         ++           
Sbjct:   594 QLRHKFRFYSHQWRTWAACFIQAAWRRHRKRKYKTELRAKEEFHYRFEAA---------T 644

Query:   661 ARLSASTRRANKHSRSDSGVVTTLQKPAEPDFS 693
             ARL+ +  +  + S SDSG+++++QKP EPDFS
Sbjct:   645 ARLAVNGGKYTR-SGSDSGMMSSIQKPVEPDFS 676
GO:0005216 "ion channel activity" evidence=IEA
GO:0005249 "voltage-gated potassium channel activity" evidence=IEA
GO:0005261 "cation channel activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006811 "ion transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185510 CNGC18 "AT5G14870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097860 CNGC16 "cyclic nucleotide-gated channel 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SL29CNG15_ARATHNo assigned EC number0.75890.96980.9970yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00091531
hypothetical protein (745 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 2e-16
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 6e-10
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 5e-09
pfam00520194 pfam00520, Ion_trans, Ion transport protein 5e-08
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 1e-07
COG0664214 COG0664, Crp, cAMP-binding proteins - catabolite g 4e-06
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 3e-04
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 17/132 (12%)

Query: 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFN 537
           LF  +D+  L+ + + L+      G  ++R+GDP + +  ++ G ++ Y  +        
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDG-REQI 59

Query: 538 SCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRL 597
              +GPGD  GE  L   L   P       + TV+++++ E   L   D       FRRL
Sbjct: 60  VGFLGPGDLFGELAL---LGNGP------RSATVRALTDSELLVLPRSD-------FRRL 103

Query: 598 HSKQLRHKFRFY 609
             +      R  
Sbjct: 104 LQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 697
KOG0498727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 100.0
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.64
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.51
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.49
cd00038115 CAP_ED effector domain of the CAP family of transc 99.44
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.39
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.38
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.38
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.38
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.37
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.36
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.29
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.26
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.21
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.21
PLN02868 413 acyl-CoA thioesterase family protein 99.18
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.16
COG2905 610 Predicted signal-transduction protein containing c 99.15
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.15
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.07
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 98.99
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.86
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.86
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.72
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.59
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.37
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 98.22
PRK10537393 voltage-gated potassium channel; Provisional 97.81
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.7
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.7
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.58
PF04831153 Popeye: Popeye protein conserved region; InterPro: 97.32
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.28
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.0
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 96.29
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 95.98
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.65
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 95.12
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 94.47
PLN032231634 Polycystin cation channel protein; Provisional 93.56
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 91.17
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 90.86
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 88.55
KOG0498727 consensus K+-channel ERG and related proteins, con 80.02
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-117  Score=996.02  Aligned_cols=569  Identities=52%  Similarity=0.874  Sum_probs=514.1

Q ss_pred             ccceeECCCChhHHHHHHHHHHHHHHHHHhhhhhccccccc-cceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEE
Q 005422           70 VKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVR-HEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAY  148 (697)
Q Consensus        70 ~~~~ii~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y  148 (697)
                      ...+|+||+|+++..||++++++|+|+++++|++||||..+ ...|  +|..+...++++|+++|+||++||+++|||||
T Consensus        65 ~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay  142 (727)
T KOG0498|consen   65 SRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY  142 (727)
T ss_pred             ccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence            34679999999999999999999999999999999999997 5567  89999999999999999999999999999999


Q ss_pred             EcCCCcccCCCeEeeChHHHHHHHhhhhHHHHhhhccCchhhhhheeccCCCCchhhh-hhHHHHHHHHHHhhhHHHHHh
Q 005422          149 VAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRN-TKNVLRFIIIFQYLPRLFLIF  227 (697)
Q Consensus       149 ~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~-~~~~Lr~i~l~q~l~Rl~ri~  227 (697)
                      ++++|+     ++|.||++||+||+++||++|++|++|+||+++|.++    ++.... ....|..+.++||||||.|++
T Consensus       143 v~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~  213 (727)
T KOG0498|consen  143 VDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVI  213 (727)
T ss_pred             ECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999964     7999999999999999999999999999999999887    233333 334778888899999999999


Q ss_pred             HhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccc
Q 005422          228 PLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESW  307 (697)
Q Consensus       228 ~l~~~i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W  307 (697)
                      |+++++.++.+++.+|||++++++|++|||++||.||+||+++.++++.||+++|-   .+|...+++|++         
T Consensus       214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw---~~~l~~~~~~~~---------  281 (727)
T KOG0498|consen  214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATW---LGSLGRLLSCYN---------  281 (727)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc---ccccccccccCc---------
Confidence            99999999999999999999999999999999999999999999999999987532   111111333322         


Q ss_pred             cccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHH
Q 005422          308 FKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVL  387 (697)
Q Consensus       308 ~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l  387 (697)
                                     ..|+||+|.++           .+|++|+|||++||||+|||+++|+|.+|++|+|++|++|+++
T Consensus       282 ---------------~~~~fg~~s~~-----------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL  335 (727)
T KOG0498|consen  282 ---------------LSFTFGIYSLA-----------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLL  335 (727)
T ss_pred             ---------------ccccccchhHH-----------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHH
Confidence                           34678887664           5999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHH
Q 005422          388 FALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH  467 (697)
Q Consensus       388 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~  467 (697)
                      ||++||||++++|+++.|.++||.|++|+++||+||+||++||+||++|+||+|..++|+||+++|++||++||+||++|
T Consensus       336 ~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~h  415 (727)
T KOG0498|consen  336 FAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRH  415 (727)
T ss_pred             HHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422          468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC  547 (697)
Q Consensus       468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f  547 (697)
                      +|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|++..  ...+++||+|
T Consensus       416 L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~--~~~L~~Gd~~  493 (727)
T KOG0498|consen  416 LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFV--VAILGPGDFF  493 (727)
T ss_pred             HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEE--EEEecCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999988885544  8999999999


Q ss_pred             cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 005422          548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRR  627 (697)
Q Consensus       548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~  627 (697)
                      ||+.++|+++ .|      +++||+|+|.|+++.|+++||++++++||++++++++|++++|+++|++|++|++|++|++
T Consensus       494 GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~  566 (727)
T KOG0498|consen  494 GEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR  566 (727)
T ss_pred             chHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence            9888888884 22      5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC---CCCCCCCCCchhHHHHHHHHHHHhhcccCCCCCC---CccCCCCCCCCCCCCCC
Q 005422          628 YKKRKEAAELRAKENIPA---EPDSPQPPSGLSIYAARLSASTRRANKHSRSDSG---VVTTLQKPAEPDFSVDE  696 (697)
Q Consensus       628 ~~~r~~~~~~~~~eery~---~~~~~~~~l~~~i~~~~~a~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~  696 (697)
                      +.+|+....+...++.-.   +..+....+..+.+++++|+|+.+.++.+++...   .+..++||.+|||+.++
T Consensus       567 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~  641 (727)
T KOG0498|consen  567 HIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAE  641 (727)
T ss_pred             HHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCccccc
Confidence            999998887776543322   4445556789999999999999998877644333   57788999999999654

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 6e-50
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 3e-11
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 4e-10
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 6e-10
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 1e-09
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 1e-09
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 1e-09
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 1e-09
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 2e-09
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-09
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 2e-09
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 7e-09
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 4e-08
1q43_A207 Hcn2i 443-640 In The Presence Of Camp, Selenomethio 1e-07
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 3e-06
2k0g_A142 Solution Structure Of A Bacterial Cyclic Nucleotide 5e-05
1u12_A138 M. Loti Cyclic Nucleotide Binding Domain Mutant Len 5e-05
1vp6_A138 M.Loti Ion Channel Cylic Nucleotide Binding Domain 6e-05
3cl1_A140 M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm 6e-05
3clp_A140 M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L 3e-04
3co2_A140 Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai 7e-04
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 108/124 (87%)
Query: 473 VRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGR 532
           VRRVPLF+ MDER+LDAICERLKP L TE ++LVREGDPVNEMLFIIRG L+S TT+GGR
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 533 TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVAS 592
           +GF+N   +  GDFCG+ELLTWALDP+    LPSSTRTVK+++EVEAFAL AD+LKFVAS
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 593 QFRR 596
           QFRR
Sbjct: 128 QFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 Back     alignment and structure
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 Back     alignment and structure
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 Back     alignment and structure
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 Back     alignment and structure
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 Back     alignment and structure
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
3ukn_A212 Novel protein similar to vertebrate potassium VOL 5e-77
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 1e-70
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 6e-66
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 2e-52
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 5e-52
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 2e-16
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 2e-13
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 6e-05
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 2e-13
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 1e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 4e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 1e-07
2pqq_A149 Putative transcriptional regulator; APC7345, strep 1e-11
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 2e-11
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 5e-09
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 2e-11
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 2e-11
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 3e-11
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 8e-11
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 7e-08
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 8e-11
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-10
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 5e-10
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 9e-10
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 1e-09
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 1e-09
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 2e-09
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 2e-09
1ft9_A222 Carbon monoxide oxidation system transcription reg 2e-09
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 3e-09
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 4e-09
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 3e-09
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 4e-09
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 4e-09
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 5e-09
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 3e-08
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 5e-08
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 3e-07
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 4e-07
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 5e-07
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 1e-06
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 2e-06
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 4e-05
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 4e-05
3b02_A195 Transcriptional regulator, CRP family; structural 1e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  244 bits (626), Expect = 5e-77
 Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 17/213 (7%)

Query: 399 LQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPT 458
            Q    R   +  +  D + ++   +LP  L Q + +  Q  W    G+D   LLK  P 
Sbjct: 4   DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63

Query: 459 DLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFI 518
           +LR DI  H+  +L+ ++PLF+      L ++   +K + C  G FL+R+GD +  + F+
Sbjct: 64  ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122

Query: 519 IRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVE 578
             G ++    N           +G GD  G + LT     +       +   VK+++  +
Sbjct: 123 CSGSMEVLKDNTVL------AILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169

Query: 579 AFALRADDLKFVAS---QFRRLHSKQLRHKFRF 608
              +    L+ V     ++ +    +++H   +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 100.0
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.97
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.86
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.81
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.77
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.75
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.74
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.73
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.73
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.72
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.71
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.71
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.71
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.68
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.67
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.67
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.67
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.66
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.66
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.65
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.64
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.63
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.63
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.62
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.62
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.61
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.61
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.6
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.59
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.59
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.58
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.57
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.56
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.56
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.54
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.53
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.53
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.52
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.52
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.5
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.48
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.47
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.46
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.46
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.45
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.45
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.44
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.43
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.42
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.41
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.33
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.32
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.29
3b02_A195 Transcriptional regulator, CRP family; structural 99.26
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.21
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.18
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.17
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.14
2q67_A114 Potassium channel protein; inverted teepee, helix 99.07
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.97
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.93
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.88
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.76
1xl4_A301 Inward rectifier potassium channel; integral membr 98.62
3um7_A309 Potassium channel subfamily K member 4; potassium 98.54
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.47
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.45
3sya_A340 G protein-activated inward rectifier potassium CH; 98.39
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.27
3um7_A309 Potassium channel subfamily K member 4; potassium 98.25
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.15
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.1
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.08
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.98
1lnq_A336 MTHK channels, potassium channel related protein; 97.83
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 97.64
1ors_C132 Potassium channel; voltage-dependent, voltage sens 97.33
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-33  Score=301.99  Aligned_cols=343  Identities=19%  Similarity=0.259  Sum_probs=129.9

Q ss_pred             ECCCChhHHHHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCc
Q 005422           75 LDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSR  154 (697)
Q Consensus        75 i~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~  154 (697)
                      ..|.|+..   +.++++++++++++.-+..+ |..        .......+..++.++-++|.+|+++++...   +.  
T Consensus         3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~-~~~--------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~--   65 (355)
T 3beh_A            3 VLPFLRIY---APLNAVLAAPGLLAVAALTI-PDM--------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA--   65 (355)
T ss_dssp             ----CCSS---SSHHHHHHHHHHHHHHHHTS-SSC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS--
T ss_pred             CCchhHHH---HHHHHHHHHHHHHHHHHHcc-cch--------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc--
Confidence            46777754   55556666666665555522 211        111122334445555566899999987421   11  


Q ss_pred             ccCCCeEeeChHHHHHHHhhh-hHHHHhhhc-cCchhhhhheeccCCCCchhhhhhHHHHHHHHHHhhhHHHHHhHhHHH
Q 005422          155 VFGRGELVIDPSKIASRYLKK-GFWIDFVAA-LPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQ  232 (697)
Q Consensus       155 ~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~-lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~  232 (697)
                           .         .+|.++ |.++|++++ +|+..+..    +   +...+...|++|       +.|+.|..+..+.
T Consensus        66 -----~---------~~~~~~~~~i~Dl~~i~~p~~~~~~----~---~~~~~r~lr~~R-------~lrl~r~~~~~~~  117 (355)
T 3beh_A           66 -----G---------VVRDRTPKIAIDVLAVLVPLAAFLL----D---GSPDWSLYCAVW-------LLKPLRDSTFFPV  117 (355)
T ss_dssp             -----C---------SSCCCHHHHHHHHHHHHHHHHHHHS----C---CSGGGGGGGGGG-------GSHHHHTCSSHHH
T ss_pred             -----c---------ceeccCcchHHHHHHHHHHHHHHHh----c---cchhHHHHHHHH-------HHHHHHHHHHHHH
Confidence                 0         124444 899999999 68754421    1   111222222222       3444444444444


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCccccccccc
Q 005422          233 IINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSN  312 (697)
Q Consensus       233 i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~  312 (697)
                      +.+...   . .....+..++++++..|+.||++|.+..                                   |.    
T Consensus       118 l~~~l~---~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~-----------------------------------~~----  154 (355)
T 3beh_A          118 LGRVLA---N-EARNLIGVTTLFGVVLFAVALAAYVIER-----------------------------------DI----  154 (355)
T ss_dssp             HHHHHH---H-THHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------------------------TT----
T ss_pred             HHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------------------CC----
Confidence            333321   1 1112233344455678999999998742                                   10    


Q ss_pred             ccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 005422          313 ITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLI  392 (697)
Q Consensus       313 l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~li  392 (697)
                                                 +.+.+..|..|+||++.|+||+||||++|.+..|++++++++++|++++++++
T Consensus       155 ---------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~  207 (355)
T 3beh_A          155 ---------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA  207 (355)
T ss_dssp             ---------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence                                       01113357899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhH
Q 005422          393 GNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDL  472 (697)
Q Consensus       393 g~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~  472 (697)
                      |.+.+.++....+                            +++.                              ...+.
T Consensus       208 ~~i~~~~~~~~~~----------------------------~~~~------------------------------~~~~~  229 (355)
T 3beh_A          208 GILATGFYQEVRR----------------------------GDFV------------------------------RNWQL  229 (355)
T ss_dssp             HHHHHHHHHHHHH----------------------------HHHH------------------------------HHHC-
T ss_pred             HHHHHHHHHHHHH----------------------------Hhhc------------------------------ccchh
Confidence            9998876532110                            0000                              02467


Q ss_pred             hcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhH
Q 005422          473 VRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELL  552 (697)
Q Consensus       473 l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l  552 (697)
                      ++++|+|+++++++++.++..++.+.++|||.|++|||+++++|+|.+|.|+++..+   +     ..+++|++|||.++
T Consensus       230 l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~  301 (355)
T 3beh_A          230 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMAL  301 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHH
Confidence            888999999999999999999999999999999999999999999999999998654   1     47899999999987


Q ss_pred             hhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422          553 TWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR  607 (697)
Q Consensus       553 ~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r  607 (697)
                         +.+.+      ++++++|.++|+++.+++++|.++++++|++..+..+...+
T Consensus       302 ---l~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~  347 (355)
T 3beh_A          302 ---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE  347 (355)
T ss_dssp             -------------------------------------------------------
T ss_pred             ---hCCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence               34444      78999999999999999999999999999887766554443
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 697
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 6e-26
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 6e-17
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 5e-13
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 7e-10
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 7e-10
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 4e-09
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 1e-08
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 6e-07
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 2e-06
d2gaua2142 b.82.3.2 (A:10-151) Transcriptional regulator PG03 3e-05
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 9e-05
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 3e-04
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 8e-04
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 0.002
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (252), Expect = 6e-26
 Identities = 93/128 (72%), Positives = 108/128 (84%)

Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNG 530
             VRRVPLF+ MDER+LDAICERLKP L TE ++LVREGDPVNEMLFIIRG L+S TT+G
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 531 GRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFV 590
           GR+GF+N   +  GDFCG+ELLTWALDP+    LPSSTRTVK+++EVEAFAL AD+LKFV
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125

Query: 591 ASQFRRLH 598
           ASQFRR  
Sbjct: 126 ASQFRRSG 133
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.97
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.81
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.79
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.76
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.74
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.72
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.71
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.7
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.7
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.67
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.65
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.65
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.63
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.62
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.58
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.54
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.42
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.15
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.03
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.92
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.53
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 97.17
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 94.85
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 88.38
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 83.13
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.4e-30  Score=248.80  Aligned_cols=187  Identities=24%  Similarity=0.419  Sum_probs=169.6

Q ss_pred             hHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhHhcCCccCCcc
Q 005422          403 TIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQM  482 (697)
Q Consensus       403 ~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l  482 (697)
                      +++.++|+++++.+++||+.+++|++|+.||++|++|.|.. ++.+++.+++.||++|+.++..+++.++++++|+|.++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~   79 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA   79 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence            35678999999999999999999999999999999999974 78899999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCC
Q 005422          483 DERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSV  562 (697)
Q Consensus       483 ~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~  562 (697)
                      ++.++..|+..++...|.||++|+++||+++.+|||.+|.|+++..+ +.     ...+++|++|||.+++.   +.+  
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~-~~-----~~~l~~G~~fGe~~~~~---~~~--  148 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NK-----EMKLSDGSYFGEICLLT---RGR--  148 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C-CC-----EEEECTTCEECHHHHHH---CSB--
T ss_pred             hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC-cc-----eeeeccceeeeeeeccC---CCc--
Confidence            99999999999999999999999999999999999999999997543 22     45789999999999853   333  


Q ss_pred             CCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005422          563 ILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHK  605 (697)
Q Consensus       563 ~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~  605 (697)
                          ++++++|.++|+++.|++++|.+++.++|++..+..+.+
T Consensus       149 ----~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~  187 (193)
T d1q3ea_         149 ----RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA  187 (193)
T ss_dssp             ----CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred             ----ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence                789999999999999999999999999998776554443
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure