Citrus Sinensis ID: 005423
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 697 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUU9 | 730 | ABC transporter G family | yes | no | 0.994 | 0.949 | 0.776 | 0.0 | |
| Q8RXN0 | 703 | ABC transporter G family | no | no | 0.793 | 0.786 | 0.367 | 1e-106 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.830 | 0.837 | 0.351 | 1e-104 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.843 | 0.855 | 0.341 | 1e-100 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.842 | 0.865 | 0.333 | 7e-92 | |
| P45843 | 666 | Protein scarlet OS=Drosop | yes | no | 0.842 | 0.881 | 0.255 | 1e-45 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.829 | 0.879 | 0.262 | 5e-45 | |
| Q9H222 | 651 | ATP-binding cassette sub- | yes | no | 0.703 | 0.752 | 0.274 | 4e-44 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | no | no | 0.723 | 0.769 | 0.263 | 1e-43 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.835 | 0.885 | 0.25 | 2e-43 |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/729 (77%), Positives = 626/729 (85%), Gaps = 36/729 (4%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN------------ 220
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 221 --------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
GL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 267 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 327 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 386
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 387 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 446
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 447 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 506
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 507 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 566
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 567 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 626
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 627 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 686
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA GYRLL++VLL + KN +
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGR 718
Query: 687 FKCDHDTNN 695
H NN
Sbjct: 719 LLLSHKKNN 727
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/588 (36%), Positives = 345/588 (58%), Gaps = 35/588 (5%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN--- 220
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP + +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 221 ------------------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256
G+ GE+RRV IA E++MRP +LF+DEP LDS S
Sbjct: 168 VERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSAS 227
Query: 257 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 316
A + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+ A
Sbjct: 228 AFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQA 287
Query: 317 GFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEATY 373
GFPCP +++PSDHFLR IN+DFD++ A K + D + TA AIR L Y
Sbjct: 288 GFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYY 347
Query: 374 QSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRLI 432
+S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL+
Sbjct: 348 HTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLL 407
Query: 433 LCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKTYASEE 491
+ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++K + E
Sbjct: 408 IYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRER 466
Query: 492 SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVN 551
N H G F++ LS+ PFL +I+ S + YF+VGL F+ ++FVL + + V
Sbjct: 467 LNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVV 526
Query: 552 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSI 611
E LM+ +ASI + I+ + + ML +G+FR+ N +P P W YP+SY++FH +++
Sbjct: 527 ESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWAL 586
Query: 612 KGLLENEYLGTSFP-VGQVRTISGYQALQSAYDISSKSNSKWGNLLVL 658
+G +N+ G +F G I G L++ + I SKW NL V+
Sbjct: 587 QGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLH-RSKWINLSVI 633
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Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 221/629 (35%), Positives = 366/629 (58%), Gaps = 50/629 (7%)
Query: 91 LPEGAAVARKIAGASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAK 146
LP ++R GA + W+DLTV I +SD ++++ NGYA PG + IMGP+
Sbjct: 13 LPSKLEMSR---GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSG 66
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206
SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E L+G+LTVRE + YS
Sbjct: 67 SGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYS 126
Query: 207 ALLQLPGFFCQRK---------------------------NGLPCGERRRVRIARELVMR 239
A L+LP + + G+ GER+RV IA E++ R
Sbjct: 127 AHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTR 186
Query: 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
P +LF+DEP LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G
Sbjct: 187 PQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGE 246
Query: 300 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS-- 357
+++FGE + ++ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q ++
Sbjct: 247 SVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSD 306
Query: 358 --VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVL 412
+N+ T+V L Y+ S A + ++ I L+ EG ++ + K S AT ++ L
Sbjct: 307 PLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRTL 365
Query: 413 TWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLL 472
T RS + M R+ YYW R+I +++++ VGT+F +G+S +S++ RV+ F + +
Sbjct: 366 TARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFM 425
Query: 473 NIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRD 532
+I G P+ ++E+K + E + + G V++L +SS PFL IS+ + + Y LV R
Sbjct: 426 SIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRP 485
Query: 533 EFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNAL 592
FS +F LN F + V E LM+VVAS+ + ++T + ++M+++G+FR+ L
Sbjct: 486 GFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDL 545
Query: 593 PGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PV--GQVRTISGYQALQSAYDISSKSN 649
P W YP+SY+++ +++I+G +N++LG F P+ G+ + ++G + ++ + + +
Sbjct: 546 PKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPK-MTGEEVIEKVFGVKV-TY 603
Query: 650 SKWGNLLVLFLMAIGYRLLLFVLLYLRVK 678
SKW +L + + + YRLL FV+L LR +
Sbjct: 604 SKWWDLAAVVAILVCYRLLFFVVLKLRER 632
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 220/644 (34%), Positives = 361/644 (56%), Gaps = 56/644 (8%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-----KRRYSDKVVKSSNGY 132
L ++G P PP A + R GA + W+DLTV I RR D + NG+
Sbjct: 3 LESTSNGRRPPPP----AEIGR---GAYLAWEDLTVVIPNFSGGPTRRLLDGL----NGH 51
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT 192
A PG + IMGP+ SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E
Sbjct: 52 AEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDI 111
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRK---------------------------NGLPCG 225
L+G+LTVRE + YSA L+L + + G+ G
Sbjct: 112 LMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGG 171
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTE 284
ER+RV +A E++ RP +LF+DEP LDS SA ++ L+ +A G T++ +I+Q S+E
Sbjct: 172 ERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSE 231
Query: 285 VFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAM 344
VF LFD + LLS+G T++FGE+ ++ F+ AGFPCP ++PSDHFLR IN+DFD + A
Sbjct: 232 VFALFDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTAT 291
Query: 345 CKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSK 400
K Q ++ +N+ T+ L Y+ S A + ++ I L EG
Sbjct: 292 LKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEV 351
Query: 401 GKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVT 457
K S AT ++ LT RS + M R+ YYW R+++ ++++ CVGT+F +GHS +S++
Sbjct: 352 RKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILA 411
Query: 458 RVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLIS 517
RV+ F + ++I G P+ ++E+K + E + + G V+++ +SS PFL I+
Sbjct: 412 RVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIA 471
Query: 518 ISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHV 577
+ + + Y +V R S +F LN F + V E LM+VVAS+ + ++T +
Sbjct: 472 LITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIG 531
Query: 578 VMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFP---VGQVRTISG 634
++M+++G+FR+ LP W YPIS++++ +++I+G +N++LG F G+ + ++G
Sbjct: 532 IIMMTSGFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPK-MTG 590
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 678
Q + + + ++SKW +L + L+ + YR+L F++L L+ +
Sbjct: 591 EQVINKIFGVQV-THSKWWDLSAIVLILVCYRILFFIVLKLKER 633
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 214/642 (33%), Positives = 349/642 (54%), Gaps = 55/642 (8%)
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKS 150
PEGA V W+DLTV I + +++ NG P + IMGP+ SGKS
Sbjct: 4 PEGAMY--------VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKS 55
Query: 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
TLL A+AGRL + M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+
Sbjct: 56 TLLDALAGRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLR 115
Query: 211 LPGFFCQRK---------------------------NGLPCGERRRVRIARELVMRPHVL 243
LP + + G+ GE++R+ IA E++ +P +L
Sbjct: 116 LPSKLTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLL 175
Query: 244 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303
F+DEP LDS SA ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++F
Sbjct: 176 FLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYF 235
Query: 304 GETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIA-MCKSWQDDHGDFS------ 356
GE + + F AGFPCP ++PSDHFLR +N+DFD + A + +S + + FS
Sbjct: 236 GEAESATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHE 295
Query: 357 SVN-------MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSA--T 407
+ N + TA TL ++ S AAA I + G + K + +
Sbjct: 296 TTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWK 355
Query: 408 RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVS 467
++ +LT RS + MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A
Sbjct: 356 QLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAG 415
Query: 468 FNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFL 527
F + ++I G + ++E+K ++ E N H G V+ + LLSS+PF+ L+ +S+S + ++
Sbjct: 416 FMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYM 475
Query: 528 VGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFR 587
V + S Y L+ + E M+++AS+ + ++ +M+LSAG+FR
Sbjct: 476 VRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFR 535
Query: 588 IRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF--PVGQVRTISGYQALQSAYDIS 645
LP W YP+SY+ + ++++G +NE +G + P+ V + G LQ+ I+
Sbjct: 536 FFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGIN 595
Query: 646 SKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLF 687
+S SKW +L V+ ++ IGYR+ F +L R K IH L+
Sbjct: 596 PES-SKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIHMLY 636
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 174/681 (25%), Positives = 305/681 (44%), Gaps = 94/681 (13%)
Query: 57 EVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV--T 114
E++V G +I + ++P LSK NS S S PL + + GA++VW+DL V
Sbjct: 21 ELQVMPVGSTIEVPSLDSTPKLSKRNS-SERSLPLRSYSKWSPTEQGATLVWRDLCVYTN 79
Query: 115 IKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174
+ G + +++ +S G PGT+ +MG + SGK+TL+ +A R P + G++ +NG
Sbjct: 80 VGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING 139
Query: 175 AK-SEMPYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGF 214
+ + G+V ++ +GSLTV E+L + A LL+ G
Sbjct: 140 RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGL 199
Query: 215 FC---------QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265
K L GER+R+ A EL+ P +LF DEP LDS SA ++ TL
Sbjct: 200 LSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLY 259
Query: 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 325
+LA G T+L TI+Q S+++F F+ + LL++G F G L F+N G+ CP +
Sbjct: 260 ELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYN 319
Query: 326 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETM 385
P+D + + TD A +S Q F + + AA M
Sbjct: 320 PADFLIGVLATDPGYEQASQRSAQHLCDQF-------------------AVSSAAKQRDM 360
Query: 386 ILRLT---EKEGPF-----LKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMIL 437
++ L + G F ++S + R V+ R+ L + R+ WLR I + +
Sbjct: 361 LVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAM 420
Query: 438 TLCVGTVFSGLGHSLSSVVTRV-AAIFVFVSFN------SLLNI--AGVPALMKEIKTYA 488
+G F+G V V A+F+ +S N S+LN+ G P M+E ++
Sbjct: 421 AFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGL 480
Query: 489 SEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCL 548
++ ++ LL ++ P +F+I + Y+L GLR F + + +
Sbjct: 481 YSTGQYYAANILALLPGMIIE-PLIFVI------ICYWLTGLRSTFYAFGVTAMCVVLVM 533
Query: 549 LVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHT 608
V ++ + V ++ L+ + + M+++G F N+LP W ++++
Sbjct: 534 NVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWW--TQFLSWML 591
Query: 609 YSIKGLLENEYLGTSFPVGQVRTISGYQ------ALQSAYDISSK----SNSKWGNLLVL 658
Y+ + + ++ G V+ I+ +Q + D+ K ++ + NLL +
Sbjct: 592 YANEAMTAAQWSG-------VQNITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAM 644
Query: 659 FLMAIGYRLLLFVLLYLRVKK 679
+ G+ LL + L+ R +K
Sbjct: 645 VGLYFGFHLLGYYCLWRRARK 665
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 174/664 (26%), Positives = 290/664 (43%), Gaps = 86/664 (12%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGK-----RRYSDKVVKSS-N 130
+S+ N LP + AR +A V+ + +T +K K R+ ++K + S N
Sbjct: 12 MSQRNKNGLPG----MSSRGARTLAEGDVLSFHHITYRVKVKSGFLVRKTAEKEILSDIN 67
Query: 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG-SYGFVER 189
G PG + I+GP GKS+LL +A R + G+V +NGA + S G+V +
Sbjct: 68 GIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPRGLSGDVLINGAPQPANFKCSSGYVVQ 125
Query: 190 ETTLIGSLTVREYLYYSALLQLP-GFFCQRKN--------------------------GL 222
+ ++G+LTVRE L +SA L+LP KN G+
Sbjct: 126 DDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGI 185
Query: 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282
GER+R I EL+ P +LF+DEP LDS +A +++ LK+++ G T++F+I+Q
Sbjct: 186 SGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPR 245
Query: 283 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRII 342
+F LFD + LL++G +F G L++F++AG+ C +P+D FL IN D +
Sbjct: 246 YSIFKLFDSLTLLASGKLMFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAV- 304
Query: 343 AMCKSWQDDH--GDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSK 400
M + DH + I L Y +S + + +L + K
Sbjct: 305 -MLNRGEQDHEANKTEEPSKREKPIIENLAEFYINSTIYGETKAELDQLP------VAQK 357
Query: 401 GKASSATRVAV--------LTW---RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG 449
K SSA R V L W RS + + +LI+ +IL L +G ++ GL
Sbjct: 358 KKGSSAFREPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGALYFGLK 417
Query: 450 HSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSS 509
+ + + R F + +++ V + E K + E + + + G+L+S
Sbjct: 418 NDPTGMQNRAGVFFFLTTNQCFTSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKLVSD 477
Query: 510 -IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWS 568
+P FL S+ + + YF++GL+ + M + L +A+ V +
Sbjct: 478 LLPMRFLPSVIYTCILYFMLGLKRTVEAFFIMMFTLIMVAYTASSMALAIAAGQSVVSVA 537
Query: 569 ILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVG 627
L + V MML +G +R P W + Y + Y L NE+LG F G
Sbjct: 538 TLLMTISFVFMMLFSGLLVNLRTIGP---WLSWLQYFSIPRYGFTALQHNEFLGQEFCPG 594
Query: 628 QVRTISGYQALQSAYDISSKSN---------SKWG--------NLLVLFLMAIGYRLLLF 670
T++ ++Y I + ++ S WG +++ + I Y LLF
Sbjct: 595 LNVTMN--STCVNSYTICTGNDYLINQGIDLSPWGLWRNHVALACMIIIFLTIAYLKLLF 652
Query: 671 VLLY 674
+ Y
Sbjct: 653 LKKY 656
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q9H222|ABCG5_HUMAN ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 155/565 (27%), Positives = 268/565 (47%), Gaps = 75/565 (13%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+T +++++ +++K + Y G + I+G + SGK+TLL A++GRL +
Sbjct: 54 WWDIT---SCRQQWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFL 110
Query: 168 GEVFVNGA--KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRK-- 219
GEV+VNG + E + +V + TL+ SLTVRE L+Y+ALL + PG F Q+K
Sbjct: 111 GEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSF-QKKVE 169
Query: 220 ---------------------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
G+ GERRRV IA +L+ P V+ DEP LD ++A
Sbjct: 170 AVMAELSLSHVADRLIGNYSLGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTAN 229
Query: 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGF 318
++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G L F++ G+
Sbjct: 230 QIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFNDCGY 289
Query: 319 PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSAD 378
PCP +P D ++ + D +S + + ++T+ ++ +E+ Y+ SA
Sbjct: 290 PCPEHSNPFDFYMDLTSVD-------TQSKERE--------IETSKRVQMIESAYKKSAI 334
Query: 379 AAAVETMILRLTE-KEGPFLKSKGKASSA--TRVAVLTWR--------SLLIMSREWKYY 427
I R+ K P + K K S +++ VL R L +++R +
Sbjct: 335 CHKTLKNIERMKHLKTLPMVPFKTKDSPGVFSKLGVLLRRVTRNLVRNKLAVITRLLQNL 394
Query: 428 WLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVS---FNSLLNIAGVPALMKEI 484
+ L L + V G ++ RV ++ FV + +LN + +++ +
Sbjct: 395 IMGLFLLFFVLRVRSNVLKG------AIQDRVGLLYQFVGATPYTGMLNAVNLFPVLRAV 448
Query: 485 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNF 544
S++ + +L L +PF + ++ S V Y+ +GL E + YF
Sbjct: 449 SDQESQDGLYQKWQM--MLAYALHVLPFSVVATMIFSSVCYWTLGLHPEVARFGYFSAAL 506
Query: 545 FMCLLVNEGLMLVVASIWK--DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPIS 602
L+ E L LV+ I + ++ S++ L+S+ V ++ +G+ R +P P IS
Sbjct: 507 LAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGV-LVGSGFLRNIQEMPIPFKI--IS 563
Query: 603 YVAFHTYSIKGLLENEYLGTSFPVG 627
Y F Y + L+ NE+ G +F G
Sbjct: 564 YFTFQKYCSEILVVNEFYGLNFTCG 588
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Homo sapiens (taxid: 9606) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/546 (26%), Positives = 253/546 (46%), Gaps = 42/546 (7%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
++ +++ + NG PG + I+GP GKS+LL +A R PH + G+V +NGA
Sbjct: 55 RKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHG--LSGDVLINGAP 111
Query: 177 SEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKN---------- 220
+ + G+V ++ ++G+LTVRE L +SA L+LP +R N
Sbjct: 112 RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDK 171
Query: 221 ------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
G+ GER+R IA EL+ P +LF+DEP LDS +A +++ LK+++
Sbjct: 172 VADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMS 231
Query: 269 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 328
G T++F+I+Q +F LFD + LL++G +F G L +F GF C +P+D
Sbjct: 232 KQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPAD 291
Query: 329 HFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 388
FL IN D ++ + D+ + + I L Y +S+ + + +
Sbjct: 292 FFLDIINGDSSAVVLNREDIGDEANETEEPSKKDTPLIEKLAEFYVNSSFFKETKVELDK 351
Query: 389 LT----EKEGPFLKSKGKASS-ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGT 443
+ K+ P K A+S ++ ++ RS + + +LI+ + L L +G
Sbjct: 352 FSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGNPQASIAQLIVTVFLGLVIGA 411
Query: 444 VFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLL 503
+F L + + + R +F + +++ V L+ E K + E + + +
Sbjct: 412 IFYDLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFF 471
Query: 504 GQLLSS-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIW 562
G+LLS +P L SI + + YFL+GL+ + +L M + L +A+
Sbjct: 472 GKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAAGQ 531
Query: 563 KDVYWSILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLG 621
V + L + V MM+ +G ++ +P W + Y++ Y L NE+LG
Sbjct: 532 SVVSIATLLMTISFVFMMIFSGLLVNLKTVVP---WLSWLQYLSIPRYGYAALQHNEFLG 588
Query: 622 TSFPVG 627
+F G
Sbjct: 589 QNFCPG 594
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 165/660 (25%), Positives = 288/660 (43%), Gaps = 78/660 (11%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGK-----RRYSDKVVKSS-N 130
+S+ N+ LP + R +A V+ + +T +K K R+ +K + S N
Sbjct: 12 MSQRNNNGLPR----TNSRAVRTLAEGDVLSFHHITYRVKVKSGFLVRKTVEKEILSDIN 67
Query: 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS-YGFVER 189
G PG + I+GP GKS+LL +A R + G+V +NGA + G+V +
Sbjct: 68 GIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPKGLSGDVLINGAPQPAHFKCCSGYVVQ 125
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFF-CQRKN--------------------------GL 222
+ ++G+LTVRE L +SA L+LP KN G+
Sbjct: 126 DDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGI 185
Query: 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282
GER+R I EL+ P +LF+DEP LDS +A +++ LK+++ G T++F+I+Q
Sbjct: 186 SGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPR 245
Query: 283 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRII 342
+F LFD + LL++G +F G L++F++AG+ C +P+D FL IN D ++
Sbjct: 246 YSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAVM 305
Query: 343 AMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGK 402
+ ++ + I L Y +SA + + +L + + KG
Sbjct: 306 LNREEQDNEANKTEEPSKGEKPVIENLSEFYINSAIYGETKAELDQLPGAQ----EKKGT 361
Query: 403 ASSATRVAVLTWRSLL--IMSREWKYYW-------LRLILCMILTLCVGTVFSGLGHSLS 453
++ V V ++ L I R +K +LI+ +IL L +G ++ L + +
Sbjct: 362 SAFKEPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGAIYFDLKYDAA 421
Query: 454 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSS-IPF 512
+ R +F + +++ V + E K + E + + + G+++S +P
Sbjct: 422 GMQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKVMSDLLPM 481
Query: 513 LFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTL 572
FL S+ + V YF++GL+ + M + L +A+ V + L +
Sbjct: 482 RFLPSVIFTCVLYFMLGLKKTVDAFFIMMFTLIMVAYTASSMALAIATGQSVVSVATLLM 541
Query: 573 ISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRT 631
V MML +G +R P W + Y + Y L NE+LG F G
Sbjct: 542 TIAFVFMMLFSGLLVNLRTIGP---WLSWLQYFSIPRYGFTALQYNEFLGQEFCPG--FN 596
Query: 632 ISGYQALQSAYDISSKSN---------SKWG--------NLLVLFLMAIGYRLLLFVLLY 674
++ ++Y I + + S WG +++ + I Y LLF+ Y
Sbjct: 597 VTDNSTCVNSYAICTGNEYLINQGIELSPWGLWKNHVALACMIIIFLTIAYLKLLFLKKY 656
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 697 | ||||||
| 255565401 | 722 | ATP-binding cassette transporter, putati | 0.998 | 0.963 | 0.847 | 0.0 | |
| 225436522 | 722 | PREDICTED: ABC transporter G family memb | 0.998 | 0.963 | 0.839 | 0.0 | |
| 356550154 | 724 | PREDICTED: ABC transporter G family memb | 0.997 | 0.959 | 0.824 | 0.0 | |
| 449501234 | 721 | PREDICTED: ABC transporter G family memb | 0.997 | 0.963 | 0.815 | 0.0 | |
| 449459100 | 721 | PREDICTED: ABC transporter G family memb | 0.997 | 0.963 | 0.815 | 0.0 | |
| 356543496 | 724 | PREDICTED: ABC transporter G family memb | 0.997 | 0.959 | 0.822 | 0.0 | |
| 358348033 | 725 | White-brown-complex ABC transporter fami | 0.997 | 0.958 | 0.809 | 0.0 | |
| 297826143 | 730 | abc transporter family protein [Arabidop | 0.994 | 0.949 | 0.777 | 0.0 | |
| 30683745 | 730 | ABC-2 type transporter-like protein [Ara | 0.994 | 0.949 | 0.776 | 0.0 | |
| 4063751 | 705 | putative ABC transporter [Arabidopsis th | 0.952 | 0.941 | 0.744 | 0.0 |
| >gi|255565401|ref|XP_002523691.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536995|gb|EEF38631.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/723 (84%), Positives = 664/723 (91%), Gaps = 27/723 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRM 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN A TPASPSLSKLNSGSLPSPPLP+ VARKIAGASVVWKDLTVTIKGKR+
Sbjct: 61 EEGGDSINLAVTPASPSLSKLNSGSLPSPPLPDSTVVARKIAGASVVWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSS+GYALPGTMTVIMGPAKSGKSTLLRAIAGRL HSA+MYGEVFVNGAKS +P
Sbjct: 121 YSDKVVKSSSGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHHSAKMYGEVFVNGAKSRLP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------- 220
YGSYGFVERETTLIGSLTV+EYLYYSALLQLPGFFC++K+
Sbjct: 181 YGSYGFVERETTLIGSLTVQEYLYYSALLQLPGFFCKKKSVVEDAIHAMSLTDYANKLIG 240
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GL GERRRV +ARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLRNGERRRVSMARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETL+CLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 335 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 394
NTDFDRIIAMCK+WQDD GDFSSVNMDTAVAIRTLEATY+SSADAAAVETM LRLTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDD-GDFSSVNMDTAVAIRTLEATYKSSADAAAVETMTLRLTEKEG 419
Query: 395 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 454
P+LKSKGKASSATR+AVLTWRSLLIMSREWKYYWLRLILCM+LTLC+GTVFSGLGHSLSS
Sbjct: 420 PYLKSKGKASSATRIAVLTWRSLLIMSREWKYYWLRLILCMLLTLCIGTVFSGLGHSLSS 479
Query: 455 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 514
VVTRVAAIFVFVSF SL+ IAGVP+L KEIK YASEESN HSGALVFLLGQLLSSIPFLF
Sbjct: 480 VVTRVAAIFVFVSFTSLIGIAGVPSLQKEIKIYASEESNRHSGALVFLLGQLLSSIPFLF 539
Query: 515 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 574
LISISSSLVFYFL+GLRDEFSLLMYFVLNFF+ LLVNEGLML++ S+W+ V+WSILT++S
Sbjct: 540 LISISSSLVFYFLIGLRDEFSLLMYFVLNFFISLLVNEGLMLLITSLWQHVFWSILTMVS 599
Query: 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 634
+HVVMMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+GLLENEYLGTSF VG+VRTISG
Sbjct: 600 IHVVMMLSAGYFRIRNALPGPVWTYPVSYIAFHTYSIQGLLENEYLGTSFAVGEVRTISG 659
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 694
+QAL+SAYDISS SNSKW N+L+LFLMAIGYR+L+F++L+ RV K+ + K +C+ DTN
Sbjct: 660 FQALRSAYDISSDSNSKWENILILFLMAIGYRILVFIVLHFRVGKSESVLKFCRCNQDTN 719
Query: 695 NHR 697
N R
Sbjct: 720 NPR 722
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436522|ref|XP_002273792.1| PREDICTED: ABC transporter G family member 3 [Vitis vinifera] gi|297734935|emb|CBI17169.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1237 bits (3201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/723 (83%), Positives = 660/723 (91%), Gaps = 27/723 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSI+ AT PASPSLSKLNSGSLPSPPLPE A ARKIAGAS+VWKDLTVTIKGKR+
Sbjct: 61 EEGGDSIHIAT-PASPSLSKLNSGSLPSPPLPESAIFARKIAGASIVWKDLTVTIKGKRK 119
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGY LPGTMTVIMGPAKSGKSTLLRA+AGRL +SA+MYGEVFVNG K +P
Sbjct: 120 YSDKVVKSSNGYTLPGTMTVIMGPAKSGKSTLLRALAGRLHNSAKMYGEVFVNGTKRHLP 179
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------- 220
YGSYGFVERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+
Sbjct: 180 YGSYGFVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDSIHAMSLGDYANKLIG 239
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GLP GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 240 GHCYMKGLPSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 299
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 300 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 359
Query: 335 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 394
NTDFDRIIAMCK+WQDDHGDFSSVNMDTAVAIRTLEATY+SS DAAAVE+MI++LT+KEG
Sbjct: 360 NTDFDRIIAMCKNWQDDHGDFSSVNMDTAVAIRTLEATYKSSVDAAAVESMIIKLTDKEG 419
Query: 395 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 454
P LKSKGKASSATR+AVLTWRSLLIMSREWKY+WLRL+LCM+ TLCVGTVFSGLGHSLSS
Sbjct: 420 PLLKSKGKASSATRIAVLTWRSLLIMSREWKYFWLRLVLCMLFTLCVGTVFSGLGHSLSS 479
Query: 455 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 514
VVTRVAAIFVFVSF SLL+IAGVPA +KEIK YA EESN HSGALVFLLGQLL+SIPFLF
Sbjct: 480 VVTRVAAIFVFVSFTSLLSIAGVPAHLKEIKIYACEESNQHSGALVFLLGQLLASIPFLF 539
Query: 515 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 574
LIS+SSSL+FYFL+GLRDEFSLLMYFVLNFF CLLVNEGL LVVASIW+D +WSILTL+
Sbjct: 540 LISVSSSLIFYFLIGLRDEFSLLMYFVLNFFTCLLVNEGLTLVVASIWQDAFWSILTLVC 599
Query: 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 634
+HV+MMLSAGYFR+R+ALPGPVWTYP+SY+AFHTY+I+GLLENEY+GTSF VGQVR+ISG
Sbjct: 600 IHVLMMLSAGYFRLRSALPGPVWTYPLSYIAFHTYAIQGLLENEYIGTSFAVGQVRSISG 659
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 694
YQAL+SAYDIS SNSKWGNLLVLFLMA+GYR+L+FVLL RV+KN + F+C+ +TN
Sbjct: 660 YQALRSAYDISPNSNSKWGNLLVLFLMAVGYRILVFVLLRFRVRKNVSACRFFQCNQNTN 719
Query: 695 NHR 697
+ R
Sbjct: 720 DAR 722
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550154|ref|XP_003543454.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/722 (82%), Positives = 647/722 (89%), Gaps = 27/722 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPRLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYALPGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------- 220
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GLP GERR V IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 335 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 394
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 395 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 454
P LKSKGKAS+ATR+AVLTWRSLL++SREW YYWL L L M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVLTWRSLLVVSREWNYYWLHLTLYMLLTLCIGTVFSGLGHSLSS 480
Query: 455 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 514
VVTRVAAIFVFVSF SLL+IA VPAL+KEIK YA EESN HS LVFLL QLLSSIPFLF
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALLKEIKIYACEESNQHSSTLVFLLAQLLSSIPFLF 540
Query: 515 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 574
LISISSSLVFYFLVGL D+FSLLMYFVLNFFM LLVNEGLMLVVA++W+DV+WS+LTL+
Sbjct: 541 LISISSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLVNEGLMLVVATLWQDVFWSVLTLLC 600
Query: 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 634
+HV MML AGYFR+RNALPGP+W YP+SY+AFHTYSI+GLLENEYLGTSF VGQVRTISG
Sbjct: 601 IHVAMMLPAGYFRVRNALPGPMWVYPMSYIAFHTYSIQGLLENEYLGTSFAVGQVRTISG 660
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDH-DT 693
+QALQ+ Y+IS +NSKW NLLVLFLMAIGYR+ +F+LL+ V + + K FKC++ DT
Sbjct: 661 FQALQNVYNISPDTNSKWKNLLVLFLMAIGYRIFVFILLFFSVGRKISLRKCFKCNNRDT 720
Query: 694 NN 695
+
Sbjct: 721 TD 722
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501234|ref|XP_004161314.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/721 (81%), Positives = 650/721 (90%), Gaps = 26/721 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------- 220
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KN
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 335 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 394
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 395 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 454
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 455 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 514
VVTRVAA+FVFVSF SLL++AGVPALM+E+K Y SEESN HSGA VFLLGQLLSSIPFLF
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKIYNSEESNYHSGAFVFLLGQLLSSIPFLF 540
Query: 515 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 574
LISISSSLVFYFL+GLRDEF LLMYFVLNFFMCLLVNEGL+LV+AS+W++++W +LTL+S
Sbjct: 541 LISISSSLVFYFLIGLRDEFKLLMYFVLNFFMCLLVNEGLILVMASLWRNIFWIVLTLVS 600
Query: 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 634
HV+MMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+GLLENEYLG+SF VG+VR I+G
Sbjct: 601 AHVLMMLSAGYFRIRNALPGPVWTYPLSYIAFHTYSIQGLLENEYLGSSFAVGEVRNITG 660
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 694
YQAL SAY+ISS ++SKW NLLVLFLM + YR+++F+LL RV K + K F+C+ D
Sbjct: 661 YQALHSAYEISSNTHSKWKNLLVLFLMVVAYRIIVFILLRFRVGKFMSLRKGFRCNRDMK 720
Query: 695 N 695
+
Sbjct: 721 D 721
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459100|ref|XP_004147284.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1194 bits (3090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/721 (81%), Positives = 650/721 (90%), Gaps = 26/721 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------- 220
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KN
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 335 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 394
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 395 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 454
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 455 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 514
VVTRVAA+FVFVSF SLL++AGVPALM+E+K Y SEESN HSGA VFLLGQLLSSIPFLF
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKIYNSEESNYHSGAFVFLLGQLLSSIPFLF 540
Query: 515 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 574
LISISSSLVFYFL+GLRDEF LLMYFVLNFFMCLLVNEGL+LV+AS+W++++W +LTL+S
Sbjct: 541 LISISSSLVFYFLIGLRDEFKLLMYFVLNFFMCLLVNEGLILVMASLWRNIFWIVLTLVS 600
Query: 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 634
HV+MMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+GLLENEYLG+SF VG+VR I+G
Sbjct: 601 AHVLMMLSAGYFRIRNALPGPVWTYPLSYIAFHTYSIQGLLENEYLGSSFAVGEVRNITG 660
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 694
YQAL SAY+ISS ++SKW NLLVLFLM + YR+++F+LL RV K + K F+C+ D
Sbjct: 661 YQALHSAYEISSNTHSKWKNLLVLFLMVVAYRIIVFILLRFRVGKFMSLRKGFRCNRDIK 720
Query: 695 N 695
+
Sbjct: 721 D 721
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543496|ref|XP_003540196.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/722 (82%), Positives = 645/722 (89%), Gaps = 27/722 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLR PISFEDSPEWEDTD++ RV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRHPISFEDSPEWEDTDIDARV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPHLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYA+PGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYAIPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------- 220
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GLP GERR V IARELVMRP +LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
+ TI QSSTEVFGLFD ICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDHICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 335 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 394
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 395 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 454
P LKSKGKAS+ATR+AV TWRSLL++SREWKYYWL LIL M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVSTWRSLLVVSREWKYYWLHLILYMLLTLCIGTVFSGLGHSLSS 480
Query: 455 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 514
VVTRVAAIFVFVSF SLL+IA VPALMKEIK YA EESN HS LVFLL QLLSSIPFLF
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALMKEIKIYACEESNQHSSTLVFLLAQLLSSIPFLF 540
Query: 515 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 574
LISISSSLVFYFLVGL D+FSLLMYFVLNFFM LLVNEGLMLVVA++W+DV+WS+LTL+
Sbjct: 541 LISISSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLVNEGLMLVVATLWQDVFWSVLTLLC 600
Query: 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 634
+HV MMLSAGYFR+RNALPGPVW YP+SY+AFHTYSI+GLLENEYLGTSF VGQVRTISG
Sbjct: 601 IHVAMMLSAGYFRVRNALPGPVWMYPMSYIAFHTYSIQGLLENEYLGTSFAVGQVRTISG 660
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDH-DT 693
+QALQ+ Y+IS SNSKW NLLVLFLMAIGYR+ +F+LL+ + + + K FKC++ DT
Sbjct: 661 FQALQNVYNISPDSNSKWKNLLVLFLMAIGYRIFVFILLFFFMGRKISLRKCFKCNNRDT 720
Query: 694 NN 695
+
Sbjct: 721 TD 722
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348033|ref|XP_003638054.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355503989|gb|AES85192.1| White-brown-complex ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/723 (80%), Positives = 645/723 (89%), Gaps = 28/723 (3%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEW+DT D++VR
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWDDTTDIDVR 60
Query: 60 VEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR 119
+EGGDSINAATTPASPSLSKLNSGSLPSP +P+GA + RKIAGASV WKDLTVTIKGKR
Sbjct: 61 ADEGGDSINAATTPASPSLSKLNSGSLPSPHIPDGAVIPRKIAGASVAWKDLTVTIKGKR 120
Query: 120 RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
+YSDKV+KSS GYALPGT+TVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+M
Sbjct: 121 KYSDKVIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQM 180
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN------------------- 220
PYGSYG+V+RETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+
Sbjct: 181 PYGSYGYVDRETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLI 240
Query: 221 -------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 273
GLP GERR V IARELVMRP +LF+DEPLYHLDSVSALLMMVTL++LASTGCT
Sbjct: 241 GGHCYMKGLPSGERRLVSIARELVMRPRILFLDEPLYHLDSVSALLMMVTLRRLASTGCT 300
Query: 274 LLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 333
L+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA
Sbjct: 301 LIITIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 360
Query: 334 INTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE 393
INTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAA+VETMIL+LTEKE
Sbjct: 361 INTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAASVETMILKLTEKE 420
Query: 394 GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLS 453
GP LKSKGKAS+ATRVAVLTWRSLL++SREWKYYWL L+L M+LTLC+GTVFSGLGHSL
Sbjct: 421 GPALKSKGKASNATRVAVLTWRSLLVVSREWKYYWLHLVLYMLLTLCIGTVFSGLGHSLY 480
Query: 454 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFL 513
SV RVAAIF FVSF SLL+IA VPALMKEIK YA EESN HS VFLL QLLSSIPFL
Sbjct: 481 SVSARVAAIFAFVSFCSLLSIARVPALMKEIKVYACEESNQHSSTFVFLLAQLLSSIPFL 540
Query: 514 FLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLI 573
FLISI+SSLVFYFLVGL D+FSLLMYFVLNFFM LL+NEG+MLVVA++W+DV+WS+LTL+
Sbjct: 541 FLISITSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLLNEGIMLVVATLWQDVFWSVLTLL 600
Query: 574 SVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTIS 633
+HVVMMLSAGYFRIR+ LPGPVW YP+SY+AFHTYSI+GLLENEYLGTSFPVGQVR+IS
Sbjct: 601 CIHVVMMLSAGYFRIRSTLPGPVWMYPMSYIAFHTYSIQGLLENEYLGTSFPVGQVRSIS 660
Query: 634 GYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDH-D 692
G+ ALQ+ Y+IS S SKW NLLVLFLMAIGYR+ +F+LL+L V K + K FKC++ D
Sbjct: 661 GFLALQNVYNISPDSGSKWKNLLVLFLMAIGYRIFVFILLFLFVGKKISLLKSFKCNNRD 720
Query: 693 TNN 695
T +
Sbjct: 721 TTD 723
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826143|ref|XP_002880954.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297326793|gb|EFH57213.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/729 (77%), Positives = 627/729 (86%), Gaps = 36/729 (4%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQ D YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT +V++R
Sbjct: 1 MEEIQSQPDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPNVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEVGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGAGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN------------ 220
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 221 --------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
GL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 267 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 327 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 386
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VETMI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVETMI 420
Query: 387 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 446
L+LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 LKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 447 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 506
GLGHSLSSV TRV+A+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVSAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 507 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 566
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLSIACIWRDVY 600
Query: 567 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 626
WS LTLISVHV+MML+AG+FRIRNALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRNALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 627 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 686
G+VR+ISGYQA+Q Y IS +NSKW N+LVL MA GYRLL++VLL + KN +
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNSKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGC 718
Query: 687 FKCDHDTNN 695
H NN
Sbjct: 719 LLLSHKKNN 727
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683745|ref|NP_850111.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] gi|334302769|sp|Q9ZUU9.2|AB3G_ARATH RecName: Full=ABC transporter G family member 3; Short=ABC transporter ABCG.3; Short=AtABCG3; AltName: Full=White-brown complex homolog protein 3; Short=AtWBC3 gi|330252981|gb|AEC08075.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/729 (77%), Positives = 626/729 (85%), Gaps = 36/729 (4%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN------------ 220
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 221 --------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
GL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 267 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 327 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 386
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 387 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 446
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 447 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 506
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 507 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 566
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 567 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 626
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 627 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 686
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA GYRLL++VLL + KN +
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGR 718
Query: 687 FKCDHDTNN 695
H NN
Sbjct: 719 LLLSHKKNN 727
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4063751|gb|AAC98459.1| putative ABC transporter [Arabidopsis thaliana] gi|20197954|gb|AAM15328.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/729 (74%), Positives = 599/729 (82%), Gaps = 65/729 (8%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN------------ 220
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 221 --------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
GL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 267 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 327 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 386
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 387 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 446
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 447 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 506
GLGHSLSSV Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVA-----------------------------IYRSEASNQHSGAFVFLLGQF 511
Query: 507 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 566
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 512 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 571
Query: 567 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 626
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 572 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 631
Query: 627 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 686
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA GYRLL++VLL + KN +
Sbjct: 632 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGR 689
Query: 687 FKCDHDTNN 695
H NN
Sbjct: 690 LLLSHKKNN 698
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 697 | ||||||
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.651 | 0.621 | 0.775 | 1.8e-262 | |
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.632 | 0.627 | 0.360 | 2.3e-97 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.631 | 0.636 | 0.326 | 9e-90 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.632 | 0.641 | 0.328 | 5.6e-88 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.578 | 0.594 | 0.313 | 1.5e-77 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.213 | 0.257 | 0.327 | 3.1e-40 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.213 | 0.257 | 0.327 | 3.1e-40 | |
| DICTYBASE|DDB_G0270826 | 615 | abcG22 "ABC transporter G fami | 0.175 | 0.198 | 0.385 | 8.7e-37 | |
| UNIPROTKB|F1N3L2 | 649 | ABCG5 "Uncharacterized protein | 0.559 | 0.600 | 0.265 | 1.4e-36 | |
| UNIPROTKB|E3LWM9 | 654 | Cre-wht-1 "CRE-WHT-1 protein" | 0.675 | 0.720 | 0.267 | 1.9e-36 |
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1819 (645.4 bits), Expect = 1.8e-262, Sum P(2) = 1.8e-262
Identities = 353/455 (77%), Positives = 389/455 (85%)
Query: 210 QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 269
+L G C K GL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLAS
Sbjct: 245 KLIGGHCYMK-GLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLAS 303
Query: 270 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDH 329
GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDH
Sbjct: 304 MGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDH 363
Query: 330 FLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRL 389
FLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI++L
Sbjct: 364 FLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMIIKL 423
Query: 390 TEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG 449
TE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++SGLG
Sbjct: 424 TEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYSGLG 483
Query: 450 HSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQXXXX 509
HSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 484 HSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGS 543
Query: 510 XXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSI 569
VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVYWS
Sbjct: 544 IPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWST 603
Query: 570 LTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQV 629
LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F VG+V
Sbjct: 604 LTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEV 663
Query: 630 RTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIG 664
R+ISGYQA+Q Y IS +N+KW N+LVL MA G
Sbjct: 664 RSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFG 698
|
|
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 162/449 (36%), Positives = 256/449 (57%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
G+ GE+RRV IA E++MRP +LF+DEP LDS SA + TL+ L+ G T++ +I+Q
Sbjct: 192 GISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIASIHQ 251
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 340
S+EVF LFDR+ LLS G T++FG+ + F+ AGFPCP +++PSDHFLR IN+DFD+
Sbjct: 252 PSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDK 311
Query: 341 IIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFL 397
+ A K + D + TA AIR L Y +S + + +++ +G L
Sbjct: 312 VRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTIL 371
Query: 398 KSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVV 456
S G +AS + LT RS + MSR++ YYWLRL++ +++T+C+GT++ +G S S+++
Sbjct: 372 DSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAIL 431
Query: 457 TRVA-AIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQXXXXXXXXXX 515
R + A FVF F + ++I G P+ ++++K + E N H G F++
Sbjct: 432 ARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIM 490
Query: 516 XXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISV 575
VGL F+ ++FVL + + V E LM+ +ASI + I+ +
Sbjct: 491 ITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGI 550
Query: 576 HVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV-GQVRTISG 634
+ ML +G+FR+ N +P P W YP+SY++FH ++++G +N+ G +F G I G
Sbjct: 551 QGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPG 610
Query: 635 YQALQSAYDISSKSNSKWGNLLVLFLMAI 663
L++ + I SKW NL V+ M I
Sbjct: 611 EYVLENVFQIDLH-RSKWINLSVILSMII 638
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 148/453 (32%), Positives = 260/453 (57%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
G+ GER+RV IA E++ RP +LF+DEP LDS SA ++ L+ +A G T++ +++Q
Sbjct: 168 GVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQ 227
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 340
S+EVF LFD + LLS+G +++FGE + ++ F+ +GFPCP ++PSDHFLR IN+DFD
Sbjct: 228 PSSEVFALFDDLFLLSSGESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDT 287
Query: 341 IIAMCKSWQD-DHGDFSS---VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPF 396
+ A K Q +S +N+ T+V L Y+ S A + ++ I L+ EG
Sbjct: 288 VTATLKGSQRIQETPATSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLE 347
Query: 397 LKSKGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLS 453
++ + K S AT ++ LT RS + M R+ YYW R+I +++++ VGT+F +G+S +
Sbjct: 348 MEIR-KGSEATWWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYT 406
Query: 454 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQXXXXXXXX 513
S++ RV+ F + ++I G P+ ++E+K + E + + G V++L
Sbjct: 407 SILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFL 466
Query: 514 XXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLI 573
V R FS +F LN F + V E LM+VVAS+ + ++T
Sbjct: 467 VAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGA 526
Query: 574 SVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PV--GQVR 630
+ ++M+++G+FR+ LP W YP+SY+++ +++I+G +N++LG F P+ G+ +
Sbjct: 527 GLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPK 586
Query: 631 TISGYQALQSAYDISSKSNSKWGNLLVLFLMAI 663
++G + ++ + + + SKW +L + + +
Sbjct: 587 -MTGEEVIEKVFGVKV-TYSKWWDLAAVVAILV 617
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| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 149/454 (32%), Positives = 256/454 (56%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTIN 279
G+ GER+RV +A E++ RP +LF+DEP LDS SA ++ L+ +A G T++ +I+
Sbjct: 167 GVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIH 226
Query: 280 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFD 339
Q S+EVF LFD + LLS+G T++FGE+ ++ F+ AGFPCP ++PSDHFLR IN+DFD
Sbjct: 227 QPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFD 286
Query: 340 RIIAMCKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGP 395
+ A K Q ++ +N+ T+ L Y+ S A + ++ I L EG
Sbjct: 287 TVTATLKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGH 346
Query: 396 FLKSKGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL 452
K S AT ++ LT RS + M R+ YYW R+++ ++++ CVGT+F +GHS
Sbjct: 347 HGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSY 406
Query: 453 SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQXXXXXXX 512
+S++ RV+ F + ++I G P+ ++E+K + E + + G V+++
Sbjct: 407 TSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPF 466
Query: 513 XXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTL 572
V R S +F LN F + V E LM+VVAS+ + ++T
Sbjct: 467 LVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITG 526
Query: 573 ISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PV--GQV 629
+ ++M+++G+FR+ LP W YPIS++++ +++I+G +N++LG F P+ G+
Sbjct: 527 AGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEP 586
Query: 630 RTISGYQALQSAYDISSKSNSKWGNLLVLFLMAI 663
+ ++G Q + + + ++SKW +L + L+ +
Sbjct: 587 K-MTGEQVINKIFGVQV-THSKWWDLSAIVLILV 618
|
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| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 132/421 (31%), Positives = 224/421 (53%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
G+ GE++R+ IA E++ +P +LF+DEP LDS SA ++ L+ +AS+G T++ +I+Q
Sbjct: 153 GISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQ 212
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 340
S EVF LFD + LLS G T++FGE + + F AGFPCP ++PSDHFLR +N+DFD
Sbjct: 213 PSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDN 272
Query: 341 IIA-MCKSWQDDHGDFS------SVN----MD---TAVAIRTLEATYQSSADAAAVETMI 386
+ A + +S + + FS + N +D TA TL ++ S AAA I
Sbjct: 273 VTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARI 332
Query: 387 LRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGT 443
+ G + K K S ++ +LT RS + MSR+ YYW+R+ + ++L++CVG+
Sbjct: 333 QEIASIVGIVTERK-KGSQTNWWKQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGS 391
Query: 444 VFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLL 503
+F +G + ++V++ A F + ++I G + ++E+K ++ E N H G V+ +
Sbjct: 392 IFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTV 451
Query: 504 GQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK 563
V + S Y L+ + E M+++AS+
Sbjct: 452 SNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVP 511
Query: 564 DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTS 623
+ ++ +M+LSAG+FR LP W YP+SY+ + ++++G +NE +G
Sbjct: 512 NFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVE 571
Query: 624 F 624
+
Sbjct: 572 Y 572
|
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| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 52/159 (32%), Positives = 90/159 (56%)
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 277
+ G+ G++RRV IA +++ P +LF+DEP LDSV++ ++ T+KK+A ++ +
Sbjct: 142 QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVASREVISTIKKIAKRENMVIICS 201
Query: 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 337
I+Q ST F LFD++ LS G T++ G +++F++ G P +P+++ L INTD
Sbjct: 202 IHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSIGHTMPPYINPAEYVLDLINTD 261
Query: 338 F--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 372
F D + + W GD V ++ ++ EAT
Sbjct: 262 FQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
|
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| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 52/159 (32%), Positives = 90/159 (56%)
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 277
+ G+ G++RRV IA +++ P +LF+DEP LDSV++ ++ T+KK+A ++ +
Sbjct: 142 QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVASREVISTIKKIAKRENMVIICS 201
Query: 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 337
I+Q ST F LFD++ LS G T++ G +++F++ G P +P+++ L INTD
Sbjct: 202 IHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSIGHTMPPYINPAEYVLDLINTD 261
Query: 338 F--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 372
F D + + W GD V ++ ++ EAT
Sbjct: 262 FQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
|
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| DICTYBASE|DDB_G0270826 abcG22 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 8.7e-37, Sum P(3) = 8.7e-37
Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
LPG R GL GE+RRV I LV P ++ +DEP LD+ SA+ +M TL +L
Sbjct: 169 LPGGIVLR--GLSGGEKRRVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQ 226
Query: 271 -GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDH 329
T++ TI+Q +E+F LF +I +L+ G +++G ++HF+ GFP P +P+D+
Sbjct: 227 KSVTVICTIHQPRSEIFKLFTKIMVLAEGRLVYYGNRP--VEHFTEIGFPFPDQTNPADY 284
Query: 330 FLRAINT 336
L A+ T
Sbjct: 285 ILDAVTT 291
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| UNIPROTKB|F1N3L2 ABCG5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 110/414 (26%), Positives = 188/414 (45%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
G+ GERRRV IA +L+ P V+ DEP LD ++A ++V L +LA ++ TI+Q
Sbjct: 190 GISHGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLAELARRDRIVILTIHQ 249
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 340
+E+F LFD+I +LS G +F G + L FS G+PCP +P D ++ + D
Sbjct: 250 PRSELFQLFDKIAILSCGELVFCGTPVEMLDFFSGCGYPCPEHSNPFDFYMDLTSVD--- 306
Query: 341 IIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSK 400
+S + + + V M VA R A Y + +A T L+ K PF K++
Sbjct: 307 ----TQSKEREIETYRRVQM-IEVAYRE-SAMYHKTMEAIE-RTKHLKTLPKI-PF-KTR 357
Query: 401 GKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL--SSVVTR 458
+ +++ VL R + + R +RL +I+ L + LG + +V R
Sbjct: 358 DSPGALSKLCVLLRRVMRNLLRNKLAVTMRLTQNLIMGLFIIFFLLRLGKDVLKGAVQDR 417
Query: 459 VAAIFVFVS---FNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQXXXXXXXXXX 515
V ++ FV + +LN + +++ + S++ H + LL
Sbjct: 418 VGLLYQFVGAMPYTGMLNAVTLFPVLRAVSDQESQDGLYHKWQM--LLAYMLHVLPFSVT 475
Query: 516 XXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD--VYWSILTLI 573
+ L E + YF + L+ E L LV+ + ++ V S++ L+
Sbjct: 476 ATLVCCSVCYWTLALYPEAARFAYFSVALLAPHLIGEFLSLVLLGVIQNPNVVNSVVALL 535
Query: 574 SVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVG 627
S+ V+M +G+ +RN P+ + Y F Y + L+ NE+ G +F G
Sbjct: 536 SIAGVLM-GSGF--VRNIQEMPIPFKILGYFTFQKYCSEILVVNEFYGQNFTCG 586
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| UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 136/508 (26%), Positives = 235/508 (46%)
Query: 175 AKSEMPYGSYGFVERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNGLPCGERRRVRIA 233
A+ M Y ERET + LT + ++ +P Q K GL CGE++R+ A
Sbjct: 149 ARLRMGSEYYSEEERETRVNQVLTQMGLQKCADTVIGIPN---QLK-GLSCGEKKRLAFA 204
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293
E++ P +LF DEP LD+ A ++ L++LA G T++ TI+Q S++V+ LF+ +C
Sbjct: 205 SEILTCPKILFCDEPTSGLDAFMAGHVVQALRRLADNGMTVIITIHQPSSQVYSLFNNVC 264
Query: 294 LLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINT-DFDRIIAMCKSWQDDH 352
L++ G ++ G + F GFPCP +P+DH +R + D DR +M K+
Sbjct: 265 LMACGRVIYLGPGDQAVPLFERCGFPCPAYYNPADHLIRTLAVIDSDRATSM-KTISKIR 323
Query: 353 GDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVL 412
F S ++ +V ++++ A + ET +EK F AS T+ L
Sbjct: 324 QGFLSTDLGQSVLAIGNANKLRAASFATSSET-----SEKTKTFFNQDYNASFWTQFRAL 378
Query: 413 TWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFV-SFNSL 471
WRS L + R+ +RL+ +I L G VF + +++++ +F + + N +
Sbjct: 379 FWRSYLTVIRDPNLLSVRLLQIIITALITGLVFFQTPVTPATIISVNGIMFNHIRNMNFM 438
Query: 472 LNIAGVPALMKEIKTYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLR 531
L VP + E+ E +N + L + GL
Sbjct: 439 LQFPNVPVITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPVLYNTIVYWLSGLY 498
Query: 532 DEFSLLMYFVLNFFMCLLVNEGLML--VVASIWKDVYWSILTLISVHVV-MMLSAGYFRI 588
F Y + L+ N + + VA+I+ + + +T++ + VV +M G+F
Sbjct: 499 PNF--WNYCFASLVTILITNVAISISYAVATIFANTDVA-MTVLPIFVVPIMAFGGFFIT 555
Query: 589 RNALPGP-VWTYPISY-------VAFHTY-SIKGLLE--NEYLGTSFPV-GQVRTISGYQ 636
+A+P W +SY +A + + SIK + E N + T+F + G R +GY+
Sbjct: 556 FDAIPSYFTWLSSLSYFKYGYEALAINEWESIKVIPECFNSSV-TAFALNGCPR--NGYE 612
Query: 637 ALQSAYDISSKSNSKWGNLLVLFLMAIG 664
L+S D S+ + K ++ +LF+M IG
Sbjct: 613 VLESI-DFSA--SHKIFDIAILFVMFIG 637
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUU9 | AB3G_ARATH | No assigned EC number | 0.7764 | 0.9942 | 0.9493 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.4__764__AT2G28070.1 | annotation not avaliable (730 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 697 | |||
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-78 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-65 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-45 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-43 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-43 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-41 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-41 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-32 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-24 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-18 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-18 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-17 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-15 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-14 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-12 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-11 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-11 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-10 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-09 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-09 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-08 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-08 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-08 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-07 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-06 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-06 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-06 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-05 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-04 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.001 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.001 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.001 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.002 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.002 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.003 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.003 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.003 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.003 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.004 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.004 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.004 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.004 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.004 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.004 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.004 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 3e-78
Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 14/205 (6%)
Query: 103 GASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ +++LTVT+K + +++K+ +G A PG +T IMGP+ +GKSTLL A+AGR
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 162 HSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ GEV +NG + G+V ++ L +LTVRE L ++A L+
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--------- 110
Query: 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 279
GL GER+RV IA ELV P +LF+DEP LDS SAL +M L++LA TG T++ +I+
Sbjct: 111 -GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
Query: 280 QSSTEVFGLFDRICLLSNGNTLFFG 304
Q S+E+F LFD++ LLS G ++FG
Sbjct: 170 QPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 1e-65
Identities = 147/618 (23%), Positives = 267/618 (43%), Gaps = 91/618 (14%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ R ++K+ +G A PG + +MG + +GK+TL+ A+A R P + G V +NG
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI 92
Query: 175 AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF------------------- 215
EM S +V+++ I +LTVRE+L + A L++P
Sbjct: 93 DAKEMRAIS-AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 216 -CQ--------RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
C R GL GER+R+ A EL+ P +LF DEP LDS A ++ LK
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211
Query: 267 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326
LA G T++ TI+Q S+E+F LFD+I L++ G + G + FS+ G PCP +P
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
Query: 327 SDHFLRAI-------NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADA 379
+D +++ + N +RI +C S+ S + D V
Sbjct: 272 ADFYVQVLAVIPGSENESRERIEKICDSFAV-----SDIGRDMLVNTNLWSGKAGGLVKD 326
Query: 380 AAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTL 439
+ AS T+ L RS L + R+ +RLI M+ +
Sbjct: 327 SENME-------------GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 440 CVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV--------PALMKEIKTYASEE 491
+G ++ G G + V A+F+F++ + N+ V P ++E ++
Sbjct: 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433
Query: 492 SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVN 551
S + L + ++ +P ++ + + Y+++GLR + + F+ + V
Sbjct: 434 SA-------YFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVA 486
Query: 552 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSI 611
+++ + ++ + +L G+F +++ PV+ +SY+++ Y
Sbjct: 487 TSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSI--PVYFKWLSYLSWFRYGN 544
Query: 612 KGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSK---------SNSK-WGNLLVLFLM 661
+GLL N++ V I A + SS N+ + +L+ L ++
Sbjct: 545 EGLLINQW-------SDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVIL 597
Query: 662 AIGYRLLLFVLLYLRVKK 679
+RLL + L +R+++
Sbjct: 598 IFFFRLLAYFALRIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-45
Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 18/206 (8%)
Query: 103 GASVVWKDL--TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160
G+ + WK+L TV +KG +R +++ + +GY PGT+T +MG + +GK+TLL +AGR
Sbjct: 1 GSVLTWKNLNYTVPVKGGKR---QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR- 56
Query: 161 PHSARMYGEVFVNGAKSEMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ + GE+ +NG + + G+VE++ +LTVRE L +SALL+
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--------- 107
Query: 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 279
GL +R+R+ I EL +P +LF+DEP LDS +A ++ LKKLA +G +L TI+
Sbjct: 108 -GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
Query: 280 QSSTEVFGLFDRICLL-SNGNTLFFG 304
Q S +F FDR+ LL G T++FG
Sbjct: 167 QPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 6e-43
Identities = 137/559 (24%), Positives = 233/559 (41%), Gaps = 79/559 (14%)
Query: 108 WKDLTVTI---KGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
W++LT + K KR + V +G+ PGT+T +MG + +GK+TLL +A R+
Sbjct: 762 WRNLTYEVKIKKEKRVILNNV----DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV 817
Query: 165 RMYGEVFVNGAKSEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKN-- 220
G+ VNG + + S G+V+++ + + TVRE L +SA L+ P K
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 221 ------------------GLP-CG----ERRRVRIARELVMRPHVL-FIDEPLYHLDSVS 256
G+P G +R+R+ I ELV +P +L F+DEP LDS +
Sbjct: 878 VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
Query: 257 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGE------TLAC 309
A + ++KLA G +L TI+Q S +F FDR+ LL G T++FG+ T+
Sbjct: 938 AWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI-- 995
Query: 310 LQHFSNAGFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRT 368
+ +F G P CP +P++ L I + N D R
Sbjct: 996 INYFEKHGAPKCPEDANPAEWMLEVIGA----------------APGAHANQDYHEVWRN 1039
Query: 369 LEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYW 428
+ +E + + + P SK AS + ++ WR+ R Y +
Sbjct: 1040 SSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLY 1099
Query: 429 LRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYA 488
+ L + L +G F +G SL + ++ A+F+ + L +P + + Y
Sbjct: 1100 SKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYE 1159
Query: 489 SEE--SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS---------LL 537
E S S L F+ Q+ IP+ + ++Y+ VG S +L
Sbjct: 1160 VRERPSRTFS-WLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVL 1218
Query: 538 MYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGP-V 596
+ + F G M++ + D + +L+ + + G + +PG +
Sbjct: 1219 FWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLL--FTMCLSFCGVLAPPSRMPGFWI 1276
Query: 597 WTYPISYVAFHTYSIKGLL 615
+ Y S TY ++ LL
Sbjct: 1277 FMYRCSPF---TYLVQALL 1292
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 7e-43
Identities = 158/630 (25%), Positives = 270/630 (42%), Gaps = 92/630 (14%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
++I G D T I+ + ++ G A PG + ++GP+ SGKSTLL A+AG
Sbjct: 62 KRILGHKPKISDETRQIQER-----TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
Query: 159 RLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217
R+ G + N K GFV ++ L LTVRE L + +LL+LP +
Sbjct: 117 RI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175
Query: 218 RKN---------------------------GLPCGERRRVRIARELVMRPHVLFIDEPLY 250
++ G+ GER+RV IA E+++ P +L +DEP
Sbjct: 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235
Query: 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310
LD+ +A +++TL LA G T++ +++Q S+ V+ +FD + +LS G LFFG+ +
Sbjct: 236 GLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
Query: 311 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLE 370
+F + GF +P+D L N +C++ + +V + TL
Sbjct: 296 AYFESVGFSPSFPMNPADFLLDLAN-------GVCQTDGVSEREKPNVKQSLVASYNTLL 348
Query: 371 ATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLL--IMSREWK--- 425
A AA+E S + S+ R+++ TW + ++ R K
Sbjct: 349 APKVK----AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERK 404
Query: 426 ---YYWLRLILCMILTLCVGTVFSGL--GHS-LSSVVTRVAAIF-------VFVSFNSLL 472
+ LR + + + +GL HS V R+ +F VF SFNS+
Sbjct: 405 HESFNTLR-----VFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVF 459
Query: 473 NIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRD 532
A+ +K AS + S + + +++ +P ++ V Y++ GL+
Sbjct: 460 VFPQERAIF--VKERASGMYTLSS----YFMARIVGDLPMELILPTIFLTVTYWMAGLKP 513
Query: 533 EFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNAL 592
E + +L +LV++GL L + + D + T+++V ++ + G F +
Sbjct: 514 ELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKAS-TIVTVTMLAFVLTGGFYVHKLP 572
Query: 593 PGPVWTYPISYVAFHTYSIKGLLENEY---------LGTSFPVGQVRTISGYQALQSAYD 643
W I Y++ YS + L+ +Y LG S P G R + A
Sbjct: 573 SCMAW---IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQ 629
Query: 644 ISSKSNSKWGNLLVLFLMAIGYRLLLFVLL 673
IS ++ VL M +GYRLL ++ L
Sbjct: 630 ISP-----ATSVSVLIFMFVGYRLLAYLAL 654
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-41
Identities = 145/621 (23%), Positives = 238/621 (38%), Gaps = 89/621 (14%)
Query: 106 VVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ K LT + +++ D ++K +G PG +TV++G SG STLL+ IA
Sbjct: 53 ALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD 112
Query: 162 HSARMY-GEVFVNG-AKSEMPYGSYGFV----ERETTLIGSLTVREYLYYSALLQLPGFF 215
G + +G E+ G V E + LTV E L ++A + P
Sbjct: 113 GFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF-PHLTVGETLDFAARCKTPQ-- 169
Query: 216 CQRKNGL-----------------------------------PCGERRRVRIARELVMRP 240
R +G+ GER+RV IA +
Sbjct: 170 -NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228
Query: 241 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
+ D LDS +AL + LK A+ T L I Q S + + LFD++ +L G
Sbjct: 229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288
Query: 300 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVN 359
++FG Q+F GF CP Q+ +D FL ++ + +R I
Sbjct: 289 QIYFGPADKAKQYFEKMGFKCPDRQTTAD-FLTSLTSPAERQI-----KPGYEKKVPRTP 342
Query: 360 MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVA--------- 410
+ R Q + KE K S TR +
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSM 402
Query: 411 ---VLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF---V 464
R+ L M + + +I+ L + +VF L + S +R A+F +
Sbjct: 403 QVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAIL 462
Query: 465 FVSFNSLLNIA----GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISS 520
F +F+SLL IA P + K + YA H A + ++S IPF + S+
Sbjct: 463 FNAFSSLLEIASMYEARPIVEKH-RKYAL----YHPSA--DAIASIISEIPFKIIESVVF 515
Query: 521 SLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMM 580
+++ YF+V R +++L F+C L L + ++ K + S + +++
Sbjct: 516 NIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL--SEAMTPAAILLLA 573
Query: 581 LS--AGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ-VRTISGYQA 637
LS G+ R ++ G W+ I YV Y+ + L+ NE+ G F Q V + GY
Sbjct: 574 LSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDN 631
Query: 638 LQSAYDISSKSNSKWGNLLVL 658
L + + ++ G V
Sbjct: 632 LGVTNKVCTVVGAEPGQDYVD 652
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 28/223 (12%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+ + K +Y+ +++ + + G + I+G + SGK+TLL AI+GR+
Sbjct: 6 WWDVGLKAKNWNKYA-RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 168 GEVFVNGAKS---EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK----- 219
G++ NG + +V ++ L+ LTVRE L Y+A+L+LP
Sbjct: 65 GQILFNGQPRKPDQFQK-CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Query: 220 ------------------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261
G+ GERRRV IA +L+ P VL +DEP LDS +AL ++
Sbjct: 124 EDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183
Query: 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
TL +LA ++ TI+Q +++F LFDRI LLS+G ++ G
Sbjct: 184 STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-32
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ W++++ T GK R ++K +G PG M +++G SG STLL+A+A R +
Sbjct: 4 LSWRNISFT-TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS 62
Query: 166 MYGEVFVNGAKS----EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNG 221
+ G++ NG E G +V E +LTVRE L ++ + F G
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFV----RG 118
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQ 280
+ GER+RV IA LV R VL D LDS +AL ++ ++ +A T ++ Q
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178
Query: 281 SSTEVFGLFDRICLLSNGNTLFFG 304
+S E++ LFD++ +L G +++G
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 30/236 (12%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ ++LT G + + + PG + ++GP +GK+TLL+ +AG L ++
Sbjct: 5 IEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS- 59
Query: 166 MYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL-QLPGFFCQRK- 219
GE+ V G + G+V +E +L LTVRE L + A L L + +
Sbjct: 60 --GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI 117
Query: 220 -----------------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262
L G ++R+ IA L+ P +L +DEP LD S +
Sbjct: 118 EELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE 177
Query: 263 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGF 318
L++LA G + E L DR+ +L++G + G + F G
Sbjct: 178 LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 6e-24
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 31/187 (16%)
Query: 112 TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ R + + + G + ++GP SGKSTLLRAIAG L ++ GE+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEIL 57
Query: 172 VNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVR 231
++G ++ + +R + Y + QL G G+R+RV
Sbjct: 58 IDG--------------KDIAKLPLEELRRRIGY--VPQLSG-----------GQRQRVA 90
Query: 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291
+AR L++ P +L +DEP LD S ++ L++LA G T++ + DR
Sbjct: 91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADR 149
Query: 292 ICLLSNG 298
+ +L +G
Sbjct: 150 VIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-23
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Query: 411 VLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 469
L R L R+ RLI +++ L GTVF L S + R +F + FN
Sbjct: 5 ALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS-LGGLNRPGLLFFSILFN 63
Query: 470 SLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLV 528
+ ++ G+ P ++E E ++ ++L ++L +P L +I L+ YF+V
Sbjct: 64 AFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMV 123
Query: 529 GLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRI 588
GL L VL + L GL L +A++ + + + ++L +G+F
Sbjct: 124 GLPVSRFFLFLLVL--LLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIP 181
Query: 589 RNALPGPVWTYPISYVAFHTYSIKGLLENEY 619
+++PG W I Y+ TY+I+ L NE+
Sbjct: 182 VDSMPG--WLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 3e-22
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 36/197 (18%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ K + + G + ++GP +GK+TL++ I G L + G
Sbjct: 4 RNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---G 55
Query: 169 EVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPC 224
E+ V G + E G++ E +L +LTVRE L S
Sbjct: 56 EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG----------------- 98
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS-- 282
G ++R+ +A+ L+ P +L +DEP LD S L++L G T+L SS
Sbjct: 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL----SSHI 154
Query: 283 -TEVFGLFDRICLLSNG 298
E L DR+ +L+NG
Sbjct: 155 LEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-21
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------SEMPYGSYGFVE 188
G + ++GP+ SGKSTLLR IAG + G + ++G G V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248
++ L LTV E + GL G+++RV +AR L M P VL +DEP
Sbjct: 83 QDFALFPHLTVLENIAL---------------GLSGGQQQRVALARALAMDPDVLLLDEP 127
Query: 249 LYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
LD ++ + LK L A G T++ + E L DR+ +L +G
Sbjct: 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 9e-20
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA--KSEMPY-GSYGFVERET 191
PG ++GP+ GK+TLLR IAG + GE+ ++G P + G V ++
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERRNIGMVFQDY 81
Query: 192 TLIGSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRVRI 232
L LTV E + + L+ L G + + L G+++RV +
Sbjct: 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVAL 141
Query: 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFD 290
AR L P +L +DEPL LD+ + LK+L G T ++ T +Q E L D
Sbjct: 142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE--EALALAD 199
Query: 291 RICLLSNGNTLFFG 304
RI +++ G + G
Sbjct: 200 RIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY 167
++LTV+ + V++ + G +T ++GP +GKSTLL+AI G L P S
Sbjct: 8 ENLTVSYGNRP-----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---- 58
Query: 168 GEVFVNG--AKSEMPYGSYGFVERETTLIGS--LTVREYLYYSALLQLPGFFCQRKNG-- 221
GE+ + G + G+V +++++ S +TV++ + G+F +
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL-LGRYGKKGWFRRLNKKDK 117
Query: 222 ----------------------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259
L G+++RV +AR L P +L +DEP +D
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177
Query: 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
+ LK+L G T+L + V FDR+ L N + + G L
Sbjct: 178 IYDLLKELRQEGKTVL-MVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228
|
Length = 254 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G I+GP+ GKSTLLR IAG ++ GEV ++G P G+V +E L+
Sbjct: 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDIGYVFQEDALL 84
Query: 195 GSLTVRE----------------------YLYYSALLQLPGF---FCQRKNGLPCGERRR 229
LTV + L L+ L GF + + +G G R+R
Sbjct: 85 PWLTVLDNVALGLELRGKSKAEARERAKELL---ELVGLAGFEDKYPHQLSG---GMRQR 138
Query: 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGL 288
V IAR L RP +L +DEP LD+++ + L +L T T+L + E L
Sbjct: 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL-VTHDVDEAVYL 197
Query: 289 FDRICLLSNG 298
DR+ +LSN
Sbjct: 198 ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-18
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 48/211 (22%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V G+ V+ + G + I+GP +GKSTLL+ +AG L S+ G
Sbjct: 3 ENLSVGYGGRT-----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---G 54
Query: 169 EVFVNGAKSEMPYGSYGFVER-----------ETTLIGSLTVREYLYYSALLQLPGFFCQ 217
E+ ++G S E E + L R + +L G
Sbjct: 55 EILLDG----KDLASLSPKELARKIAYVPQALELLGLAHLADRPFN------ELSG---- 100
Query: 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 276
GER+RV +AR L P +L +DEP HLD + ++ L++LA G T++
Sbjct: 101 -------GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153
Query: 277 T---INQSSTEVFGLFDRICLLSNGNTLFFG 304
+N DR+ LL +G + G
Sbjct: 154 VLHDLNL----AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 3e-18
Identities = 79/320 (24%), Positives = 132/320 (41%), Gaps = 45/320 (14%)
Query: 32 YLRKPGSLRQPISFEDSPEWEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPL 91
YL G + IS E + E E + + N A +S S
Sbjct: 787 YLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKGKRRYSD---------------KVVKSSNGYALPG 136
E A G + + L ++ + D ++++ G PG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLI 194
+T +MG + +GK+TL+ +AGR + G++ ++G K E G+ E+
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKN---------------------------GLPCGER 227
+TVRE L YSA L+LP + + GL +R
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
+R+ IA ELV P ++F+DEP LD+ +A ++M T++ TG T++ TI+Q S ++F
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 288 LFDRICLLSNGNTLFFGETL 307
FD + L+ G + + L
Sbjct: 1086 AFDELLLMKRGGQVIYSGPL 1105
|
Length = 1470 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 4e-18
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 48/201 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV V+G SE ++ G
Sbjct: 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKELAAFRRRHIG 85
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN--------------GLP-------- 223
FV + L+ LT E ++LP GL
Sbjct: 86 FVFQSFNLLPDLTALEN------VELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139
Query: 224 ---CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TI 278
G+++RV IAR L P ++ DEP +LDS + +M L++L G T++ T
Sbjct: 140 ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
Query: 279 NQSSTEVFGLFDRICLLSNGN 299
+ E+ DRI L +G
Sbjct: 200 DP---ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 1e-17
Identities = 59/225 (26%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 109 KDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
+DLTV Y V++ + PG I+GP +GKSTLL+AI G L ++
Sbjct: 3 EDLTV------SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS--- 53
Query: 168 GEVFVNGAKSEMPYGSYGFV-ERETTLIGS-LTVREYLYYSALLQLPGFFCQRKNG---- 221
G + V G E G+V +R + ++VR+ + F K
Sbjct: 54 GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 222 -------------------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262
L G+++RV +AR LV P +L +DEP +D + +
Sbjct: 114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 263 TLKKLASTGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 304
L++L G T+L + V FDR+ LL N + G
Sbjct: 174 LLRELRREGMTILVVTHDLGL----VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 35/202 (17%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA-------KSEMPYG 182
+ L +T I G + +GKSTLLR IAG + G + +NG K +P
Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQ 73
Query: 183 --SYGFVERETTLIGSLTVREYLYY-----------------SALLQLPGFFCQRKNGLP 223
G V ++ L L VRE L + LL L + L
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLS 133
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSS 282
GE++RV +AR L +P +L +DEP LD L ++ LK++ ++F +
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF-VTHDL 192
Query: 283 TEVFGLFDRICLLSNGNTLFFG 304
+E L DRI ++ +G + G
Sbjct: 193 SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 43/206 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY------GFVE 188
G +T I+GP SGKSTLL+ +AG L + GEV ++G K +V
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDG-KDIASLSPKELAKKLAYVP 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRK-----------------------NGLPCG 225
+ + LTV E + L F K + L G
Sbjct: 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGG 142
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT---INQS 281
ER+RV IAR L +L +DEP HLD + ++ L+ L G T++ +N +
Sbjct: 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA 202
Query: 282 STEVFGLF-DRICLLSNGNTLFFGET 306
+ + D + LL +G + G
Sbjct: 203 A-----RYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 57/186 (30%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++GP+ GKSTLLR IAG ++ GEV V+G P G+V ++ L+
Sbjct: 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRGYVFQQDALL 85
Query: 195 GSLTVRE----------------------YLYYSALLQLPGFFCQRKNGLPCGERRRVRI 232
LTV + L L+ L GF + L G R+RV +
Sbjct: 86 PWLTVLDNVALGLELQGVPKAEARERAEELL---ELVGLSGFENAYPHQLSGGMRQRVAL 142
Query: 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDR 291
AR L + P VL +DEP LD+++ + L + TG T+L + E L DR
Sbjct: 143 ARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL-VTHDIDEAVFLADR 201
Query: 292 ICLLSN 297
+ +LS
Sbjct: 202 VVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 57/199 (28%), Positives = 79/199 (39%), Gaps = 49/199 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVER---- 189
G +I+GP SGKSTLLR + G L P S GEV V+G E
Sbjct: 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS----GEVLVDG----KDLTKLSLKELRRKV 77
Query: 190 -------ETTLIGSLTVREYLYYS----------------ALLQLPGFFCQRK---NGLP 223
+ G TV E + + L+L G R L
Sbjct: 78 GLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLS 136
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+++RV IA L M P +L +DEP LD ++ LKKL + G T++ T
Sbjct: 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII-----VT 191
Query: 284 ----EVFGLFDRICLLSNG 298
+ L DR+ +L +G
Sbjct: 192 HDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 42/219 (19%)
Query: 119 RRYSD-----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173
+R+ D + V + PG +T ++GP +GK+T LR +AG L A G V+
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVD 65
Query: 174 G---------AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSAL--------------- 208
G A+ + GFV T L LT RE L Y++ L
Sbjct: 66 GFDVVKEPAEARRRL-----GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 209 ---LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265
L + +R G G R++V IAR LV P VL +DEP LD ++ + ++
Sbjct: 121 ADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
+L + G +LF+ + EV L DR+ +L G ++ G
Sbjct: 181 QLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 44/232 (18%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ T + K +K + PG ++GP+ +GKSTLLR + G + ++ G
Sbjct: 4 ENLSKTYPNGK----KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---G 56
Query: 169 EVFVNG---------------AKSEMPYGSYGFVERET-----------------TLIGS 196
V ++G + M + + +ER + +L G
Sbjct: 57 SVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGL 116
Query: 197 LTVREYLYYSALLQ---LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253
E A L+ L QR + L G+++RV IAR L+ +P ++ DEP+ LD
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 254 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
S+ +M LK++ G T++ +++Q DRI L +G +F G
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 30/207 (14%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
+R+ +P G++ ++GP+ SGKSTLLR IAG L G + +NG
Sbjct: 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDS--GRIRLNGQD 63
Query: 177 -SEMPYG--SYGFVERETTLIGSLTVREYLYYS-------------------ALLQLPGF 214
+ + GFV + L LTVR+ + + L+QL G
Sbjct: 64 ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL 123
Query: 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS--TGC 272
+ N L G+R+RV +AR L + P VL +DEP LD+ + L+KL
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183
Query: 273 TLLFTINQSSTEVFGLFDRICLLSNGN 299
T+ T +Q E + DRI ++SNG
Sbjct: 184 TVFVTHDQE--EAMEVADRIVVMSNGK 208
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 49/230 (21%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V K + + ++ G + I+GP+ SGKSTLLR I G L
Sbjct: 11 GGRTVLKGVDLDVR------------------RGEILAIIGPSGSGKSTLLRLIVGLLRP 52
Query: 163 SARMYGEVFVNGAK----SEMPYGS----YGFVERETTLIGSLTV--------REYLYYS 206
+ GEV ++G SE G + + L SLTV RE+ S
Sbjct: 53 DS---GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLS 109
Query: 207 ------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
+ L G L G ++RV +AR L + P +L DEP LD
Sbjct: 110 EEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169
Query: 255 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
+++ ++ ++ L + F + DRI +L +G + G
Sbjct: 170 IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 7e-16
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 42/175 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG I+GP+ SGKSTLL+ + ++ GE+ ++G ++ S +V +
Sbjct: 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESLRKNIAYVPQ 83
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249
+ L S T+RE N L G+R+R+ IAR L+ P +L +DE
Sbjct: 84 DPFLF-SGTIRE------------------NILSGGQRQRIAIARALLRDPPILILDEAT 124
Query: 250 YHLDSVSALLMMVTLKKLASTGCTLLF------TINQSSTEVFGLFDRICLLSNG 298
LD + L++ L+ LA G T++ TI DRI +L +G
Sbjct: 125 SALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD--------ADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 7e-16
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 52/238 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-----RLPHS------------ARMYGEVFVNGAKSE 178
G M ++GP+ SGKSTLLR ++G + S R+ ++ + A +
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG 89
Query: 179 MPYGSYGFVER----ETTLIGSL--------------TVREYLYYSALLQ--LPGFFCQR 218
+ + V R E LIG+L ++ AL + + F QR
Sbjct: 90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR 149
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 277
+ L G+++RV IAR L+ + V+ DEP+ LD SA ++M TL+ + G T++ T
Sbjct: 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209
Query: 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAIN 335
++Q +RI L G+ + G Q F N F DH R+IN
Sbjct: 210 LHQVDY-ALRYCERIVALRQGHVFYDG----SSQQFDNERF---------DHLYRSIN 253
|
Length = 262 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 54/233 (23%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V+ + + + G + I+G + SGKSTLLR I G L
Sbjct: 19 GDRVILDGVDLDVP------------------RGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 163 SARMYGEVFVNGAKSEMPYGS----------YGFVERETTLIGSLTVRE--YLYYSALLQ 210
GE+ ++G ++P S G + ++ L SLTV E +
Sbjct: 61 DK---GEILIDGE--DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 211 LPGFFCQR-------KNGLPC------------GERRRVRIARELVMRPHVLFIDEPLYH 251
LP + GL G R+RV +AR + + P +LF+DEP
Sbjct: 116 LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 252 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
LD +SA ++ +++L + + + + DR+ +L++G + G
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ +K ++ + V+K N G V++GP+ GKSTLLR IAG ++ GE
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GE 59
Query: 170 VFVNGAK-SEMP--YGSYGFVERETTLIGSLTVREYLYYS-------------------A 207
+ ++G +++P V + L +TV E + +
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 208 LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
LL L ++ L G+R+RV +AR LV +P V +DEPL +LD+ +LM +KKL
Sbjct: 120 LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179
Query: 268 -ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307
G T ++ + E L DRI ++++G G L
Sbjct: 180 HERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
|
Length = 338 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 37/220 (16%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ ++ +RY K L M ++GP +GK+TL+R +A P S+ G +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSS---GTIR 57
Query: 172 VNGAK-SEMP---YGSYGFVERETTLIGSLTVREYLYYSALL------------------ 209
++G + P G++ +E + + TVRE+L Y A L
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117
Query: 210 -QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
L ++ L G RRRV IA+ LV P +L +DEP LD + L +L
Sbjct: 118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177
Query: 269 STGCTLLFTINQSST----EVFGLFDRICLLSNGNTLFFG 304
+L ST +V L +++ +L+ G +F G
Sbjct: 178 EDRIVIL------STHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 8e-15
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 38/216 (17%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ + + D V + G ++GP+ GK+TLLR IAG S+ GE+
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEI 62
Query: 171 FVNGAKSEMPYGSYGFVERET-------TLIGSLTVREYLYYS----------------- 206
++G +R L +TV E + +
Sbjct: 63 LLDG----EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 207 ---ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 263
L+ L GF ++ + L G+++RV +AR LV P VL +DEPL LD+ M
Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178
Query: 264 LKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 298
LK+L G T ++ + E + DRI ++++G
Sbjct: 179 LKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 120 RYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-S 177
RY + K V N G V++GP+ SGK+T L+ I + ++ GE+ ++G S
Sbjct: 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDIS 66
Query: 178 EMP----YGSYGFVERETTLIGSLTVREYLYY----------------SALLQL----PG 213
++ G+V ++ L LTV E + LL L P
Sbjct: 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS 126
Query: 214 FFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 271
+ R + L G+++RV +AR L P +L +DEP LD ++ + +K+L G
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG 186
Query: 272 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315
T++F + E L DRI ++ G + + L + +N
Sbjct: 187 KTIVF-VTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
|
Length = 309 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-15
Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 31/212 (14%)
Query: 119 RRYSDKV--VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG- 174
+ Y KV V+ + A G +T ++G +GK+TLLR IA L P S G+V ++G
Sbjct: 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS----GKVTIDGV 64
Query: 175 ---AKSEMPYGSYGFVERETTLIGSLTVREYLYY-------------------SALLQLP 212
G + E L LT RE L Y S LQL
Sbjct: 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL 124
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
+ +R G +++V IAR LV P +L +DEP LD + +K+L + G
Sbjct: 125 EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR 184
Query: 273 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
++F+ + EV L DR+ +L G + G
Sbjct: 185 AVIFS-SHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------------AKSEM 179
G M I+GP+ +GKSTLLR++ G + + GE+ NG M
Sbjct: 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGM 85
Query: 180 PYGSYGFVER----ETTLIGSL----TVR----------EYLYYSAL--LQLPGFFCQRK 219
+ + V R E L+G L T R + AL + + QR
Sbjct: 86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA 145
Query: 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTI 278
+ L G+++RV IAR LV +P ++ DEP+ LD SA +M LK + G T++ +
Sbjct: 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL 205
Query: 279 NQSSTEVFGLFDRICLLSNGNTLFFG 304
+Q DRI L G +F G
Sbjct: 206 HQVDL-AKKYADRIIGLKAGRIVFDG 230
|
Length = 258 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 134 LPGT-MTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKS-EMP--YGSYGF 186
LPG +T I G + SGK+TL+R IAG P + G + K +P G+
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 187 VERETTLIGSLTVREYLYYS-----------------ALLQLPGFFCQRKNGLPCGERRR 229
V +E L L+VR L Y LL + + L GE++R
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQR 139
Query: 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGL 288
V I R L+ P +L +DEPL LD ++ L++L A G +L+ ++ S EV L
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY-VSHSLQEVLRL 198
Query: 289 FDRICLLSNGNTLFFG 304
DR+ +L +G G
Sbjct: 199 ADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 37/195 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV +NG SE G
Sbjct: 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKELAKLRRKKIG 86
Query: 186 FVERETTLIGSLTVRE----YLYYS------------ALLQLPGFFCQRKNGLPC----G 225
FV + L+ LTV E L + LL++ G + P G
Sbjct: 87 FVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGG 146
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TINQSST 283
+++RV IAR L+ P ++ DEP +LDS +A ++ L++L G T++ T +
Sbjct: 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--- 203
Query: 284 EVFGLFDRICLLSNG 298
E+ DR+ L +G
Sbjct: 204 ELAKYADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 31/199 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG--------SYGF 186
G +++GP SGKSTLL+ + G L + GEV V+G + F
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVF 85
Query: 187 VERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRK---NGLPCGER 227
+ L G TV + + + L+L G L G++
Sbjct: 86 QNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQK 144
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
+RV IA L M P +L +DEP LD ++ LKKL G + + V
Sbjct: 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE 204
Query: 288 LFDRICLLSNGNTLFFGET 306
DR+ +L +G L G+
Sbjct: 205 YADRVVVLDDGKILADGDP 223
|
Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L++ G + + + + G I+G + SGKSTL R +AG S+ G
Sbjct: 7 RNLSIVYGGGKFAF-HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---G 62
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYS------------- 206
+ ++G P R ++ SL TV L
Sbjct: 63 SILLDGKPLA-PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 207 ----ALLQLPGFFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALL- 259
+ LP F R+ + L G+R+R+ IAR L+ P +L +DEP LD SV A +
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181
Query: 260 -MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 316
+++ LKK G T LF I+ V + DRI ++ NG + G T L H S+
Sbjct: 182 NLLLELKK--ERGLTYLF-ISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG + S G + +NG + E P G V + L+
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAERGVVFQNEALL 86
Query: 195 GSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRVRIARE 235
L V + + + AL+ L G + L G R+RV IAR
Sbjct: 87 PWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARA 146
Query: 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295
L + P +L +DEP LD+++ M L L + I E L R+ +L
Sbjct: 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVL 206
Query: 296 SNG 298
S G
Sbjct: 207 SPG 209
|
Length = 259 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 42/242 (17%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY--GEVFVN 173
K+ K V ++ G + VIMG + SGKST +R + RL P + +++ GE +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMK 59
Query: 174 GAKSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQ-------------------L 211
+ E+ G V ++ L +T+ + L L
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL 119
Query: 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 270
+ + + L G ++RV +AR L P +L +DE LD + M LKKL +T
Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 271 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 330
T++F I E + DRI ++ G + G P I+++P++ +
Sbjct: 180 QKTIVF-ITHDLDEAIRIGDRIVIMKAGEIV-------------QVGTPDEILRNPANEY 225
Query: 331 LR 332
+
Sbjct: 226 VE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 34/193 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEMPYGS--YGFVER 189
G + ++GP+ +GKSTLLR IAG L G + +NG S + GFV +
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAG-LETPDA--GRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84
Query: 190 ETTLIGSLTVREYLYY------------------SALL---QLPGFFCQRKNGLPCGERR 228
L +TV + + + LL QL G + L G+R+
Sbjct: 85 HYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ 144
Query: 229 RVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLF-TINQSSTEVF 286
RV +AR L + P VL +DEP LD+ V L K G T +F T +Q E
Sbjct: 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE--EAL 202
Query: 287 GLFDRICLLSNGN 299
L DR+ +L+ G
Sbjct: 203 ELADRVVVLNQGR 215
|
Length = 345 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 27/199 (13%)
Query: 140 VIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMP--YGSYGFVERETTLIG 195
VI+GP SGKS LL IAG + P S G++ +NG + +P +V + L
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDS----GKILLNGKDITNLPPEKRDISYVPQNYALFP 84
Query: 196 SLTVREYLYYSALLQLP------------------GFFCQRKNG-LPCGERRRVRIAREL 236
+TV + + Y + RK L GE++RV IAR L
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL 144
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
V+ P +L +DEP LD + + LKK+ + + E + L D++ ++
Sbjct: 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML 204
Query: 297 NGNTLFFGETLACLQHFSN 315
NG + G+ + N
Sbjct: 205 NGKLIQVGKPEEVFKKPKN 223
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 50/236 (21%), Positives = 87/236 (36%), Gaps = 42/236 (17%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA+ V DL++ I+ G + ++G + GK+TLLRAIAG
Sbjct: 16 GANTVLDDLSLEIE------------------AGELLALIGKSGCGKTTLLRAIAG-FVK 56
Query: 163 SARMYGEVFVNGAKSEM--PYG-SYGFVERETTLIGSLTVREYLYYS------------- 206
+A + G + + P+ + + L L V + + +
Sbjct: 57 AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE 116
Query: 207 ------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260
L+ L L G ++R+ IAR + + P VL +DEPL LD+ M
Sbjct: 117 RVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176
Query: 261 MVTLKKLASTGCTL-LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315
+ L L + + + L D+ ++ +G GE A ++
Sbjct: 177 REEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 7e-13
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 42/226 (18%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G D++ +++ G + ++GP +GK+T +R I G
Sbjct: 7 TKRFGRVTALDDISFSVE------------------KGEIFGLLGPNGAGKTTTIRMILG 48
Query: 159 RLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------- 210
+ + GEV +G G++ E L + V + L Y A L+
Sbjct: 49 IILPDS---GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA 105
Query: 211 ------------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
L + +R L G +++V+ ++ P +L +DEP LD V+
Sbjct: 106 RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVE 165
Query: 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
L+ +++LA G T++ + +Q V L DR+ LL+ G + +G
Sbjct: 166 LLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-13
Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 42/187 (22%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYG 182
+V+K N A G + ++G +GKSTLL + G L P S G V ++G + Y
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS----GAVLIDGE--PLDYS 59
Query: 183 SYGFVERETTL---------------------IGSLT-----------VREYLYYSALLQ 210
G +ER + G L VRE L +
Sbjct: 60 RKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREAL---TAVG 116
Query: 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
G + + L GE++RV IA + MRP VL +DEP LD M+ L++L +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 271 GCTLLFT 277
G T++ +
Sbjct: 177 GMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++LT T K + V + G + ++G +GK+T L+ + G L ++ G
Sbjct: 4 RNLTKTYKKGTKP---AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---G 57
Query: 169 EVFVNGA--KSEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQ-------------- 210
++NG +++ S G+ + L LTVRE+L + A L+
Sbjct: 58 TAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL 117
Query: 211 -----LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265
L +R L G +R++ +A L+ P VL +DEP LD S + +
Sbjct: 118 LRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177
Query: 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307
++ G +++ T S E L DRI ++S+G G
Sbjct: 178 EVRK-GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 65/227 (28%), Positives = 96/227 (42%), Gaps = 51/227 (22%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G V +++ IK G ++GP+ GK+TLLR IAG
Sbjct: 7 SKFYGGFVALDGVSLDIK------------------EGEFFTLLGPSGCGKTTLLRLIAG 48
Query: 159 -RLPHSARMYGEVFVNGAKSEMPYGSY----GFVERETTLIGSLTVREYLYYS------- 206
P S GE+ ++G K + V + L LTV E + +
Sbjct: 49 FETPTS----GEILLDG-KDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103
Query: 207 ------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
L+QL G+ ++ + L G+++RV IAR LV P VL +DEPL LD
Sbjct: 104 KAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163
Query: 255 VSALLMMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 299
M + LK+L G T +F T +Q E + DRI +++ G
Sbjct: 164 KLRKDMQLELKRLQKELGITFVFVTHDQE--EALTMSDRIAVMNKGK 208
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 43/196 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G ++GP+ +GKSTLL+ I LP S G + VNG +PY G
Sbjct: 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDLRGRAIPYLRRKIGV 82
Query: 187 VERETTLIGSLTVREYLYYS----------------ALLQLPGFFCQRKNGLPC----GE 226
V ++ L+ V E + ++ A L+L G + LP GE
Sbjct: 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL-SHKHRALPAELSGGE 141
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286
++RV IAR +V P +L DEP +LD + +M LKK+ G T++ +
Sbjct: 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE---- 197
Query: 287 GLFD----RICLLSNG 298
L D R+ L G
Sbjct: 198 -LVDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS----YGFV 187
A PG++T ++GP SGKSTLLR +AG L A G V + G + + V
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRARARRVALV 80
Query: 188 ERETTLIGSLTVREYL-----------------------YYSALLQLPGFFCQRKNGLPC 224
E+++ LTVR+ + A +L + + L
Sbjct: 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSG 140
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
GER+RV +AR L P +L +DEP HLD + L + +++LA+TG T++
Sbjct: 141 GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 35/199 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYGSYGFV 187
G + I+GP+ +GKSTLL IAG P S GE+ +NG +E P +
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETPAS----GEILINGVDHTASPPAERPVSM---L 76
Query: 188 ERETTLIGSLTVREY--------LYYSALLQ-----------LPGFFCQRKNGLPCGERR 228
+E L LTV + L +A + L GF + L G+R+
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQ 136
Query: 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFG 287
RV +AR LV +L +DEP LD M+ + +L TLL + +
Sbjct: 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAAR 195
Query: 288 LFDRICLLSNGNTLFFGET 306
+ DR+ L NG G T
Sbjct: 196 IADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 35/208 (16%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFVNGA 175
KR + + N G V++GP+ GK+T LR IAG P S R+Y G V
Sbjct: 8 KRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67
Query: 176 KSE-----MPYGSYGFVERETTLIGSLTVREYLYY-------------------SALLQL 211
+ M + +Y L +TV + + + + LLQ+
Sbjct: 68 PPKDRDIAMVFQNYA-------LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI 120
Query: 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-AST 270
++ L G+R+RV + R +V P V +DEPL +LD+ + M LK+L
Sbjct: 121 EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180
Query: 271 GCTLLFTINQSSTEVFGLFDRICLLSNG 298
G T ++ + E + DRI ++++G
Sbjct: 181 GTTTIY-VTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 65/223 (29%), Positives = 104/223 (46%), Gaps = 36/223 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERETT 192
G V +GP+ GKSTLLR IAG ++ G++F+ + +++P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIA 233
L L+V E + + + +LQL ++ L G+R+RV I
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRI 292
R LV P V +DEPL +LD+ + M + + +L G T+++ + E L D+I
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKI 204
Query: 293 CLLSNGNTLFFGETLACLQHF-SN---AGFPCPIMQSPSDHFL 331
+L G G+ L L H+ +N AGF + SP +FL
Sbjct: 205 VVLDAGRVAQVGKPLE-LYHYPANRFVAGF----IGSPKMNFL 242
|
Length = 369 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 7e-12
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 46/221 (20%)
Query: 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG------ 174
+ +K+ N PG I+GP+ +GKSTLLR I RL P S G + + G
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSS----GSILLEGTDITKL 69
Query: 175 ---------AKSEMPYGSYGFVER----ETTLIGSL----TVREYLY----------YSA 207
+ M + Y +ER E L G L T R L SA
Sbjct: 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129
Query: 208 L--LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265
L + L QR + L G+++RV IAR L +P ++ DEP+ LD ++ +M LK
Sbjct: 130 LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 266 KLAST-GCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 304
++ G T++ ++Q ++ + DRI L G +F G
Sbjct: 190 RINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDG 228
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERET 191
G + ++GP+ SGK+TLLR IAG L G + G +++P + GFV +
Sbjct: 27 SGELVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 192 TLIGSLTVREYLYY--------------------SALL---QLPGFFCQRKNGLPCGERR 228
L +TV + + + LL QL + L G+R+
Sbjct: 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQ 143
Query: 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVF 286
RV +AR L + P VL +DEP LD+ + L++L T +F T +Q E
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE--EAL 201
Query: 287 GLFDRICLLSNGN 299
+ DR+ +++ G
Sbjct: 202 EVADRVVVMNKGR 214
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 53/206 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I+G L ++ G V +G + +P +
Sbjct: 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLP--PHEIARLGIGR 79
Query: 190 ---ETTLIGSLTVREYLYYSALLQLPGFFCQRKN-------------------------- 220
L LTV E + +A + +
Sbjct: 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR 139
Query: 221 ---GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 277
L G++RR+ IAR L P +L +DEP L+ + +++L G T+L
Sbjct: 140 PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL- 198
Query: 278 INQSSTE-----VFGLFDRICLLSNG 298
E V L DR+ +L G
Sbjct: 199 -----VEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
L K R S + V+ + G + +G +GKST L+ + G L ++ G+V
Sbjct: 26 LNHFFHRKER-SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKV 81
Query: 171 FVNG-----------AKSEMPYGSYGFVERETTLIGSLTVREYLY-------------YS 206
VNG + G + + + SL V + +Y +
Sbjct: 82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLT 141
Query: 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
+L L GF L G+R R +A L+ P VLF+DEP LD + + LK+
Sbjct: 142 EILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 267 LAST-GCTLLFTINQSSTEVFG----LFDRICLLSNGNTLFFGETLACLQHFSN 315
T+L T T +F L DR+ L+ G +F G + F
Sbjct: 202 YNEERQATVLLT-----THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250
|
Length = 325 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 26/217 (11%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ I+G + + DK V + + PG + ++GP +GK+T R I G L + GE
Sbjct: 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GE 58
Query: 170 VFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------------------ 210
+ NG S+ G++ E L +TV + L Y A L+
Sbjct: 59 ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERL 118
Query: 211 -LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 269
+ G ++ L G +++++ ++ P +L +DEP LD V+ L+ + +L
Sbjct: 119 EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 270 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
G T++F+ + V L DR+ +L G T+ +G
Sbjct: 179 EGATIIFS-SHRMEHVEELCDRLLMLKKGQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 60/193 (31%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERE---- 190
G + ++GP +GK+TLLRAI G +P + G V V GA + G+V +
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 191 ---------------TTLIGSL---------TVREYLYYSALLQLPGFFCQRKNG-LPCG 225
T IG L VR+ L L +L R G L G
Sbjct: 62 WDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL----ADRPVGELSGG 117
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285
+R+RV +AR L RP VL +DEP LD + L+ +LA G +L T +
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT-THDLAQA 176
Query: 286 FGLFDRICLLSNG 298
DR+ LL NG
Sbjct: 177 MATCDRVVLL-NG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 27/212 (12%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DLT T KR V+ + + G + +GP +GK+T ++ I G + + G
Sbjct: 4 NDLTKTYGKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---G 55
Query: 169 EVFVNG---AKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQ------- 217
E+ +G K+ G + +LT RE L A LL +
Sbjct: 56 EITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG 115
Query: 218 -------RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
+ G G ++R+ IA L+ P +L +DEP LD + + L
Sbjct: 116 LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 271 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302
G T+L + + S E+ + DRI +++ G +
Sbjct: 176 GITVLISSHLLS-EIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 65/246 (26%), Positives = 94/246 (38%), Gaps = 60/246 (24%)
Query: 74 ASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV---TIKGKRRYSDKVVKSSN 130
A P L P A + ++L+ + KG VK+ +
Sbjct: 257 AVPRLGD-EKIIRLPRRGPLRAEPLLSV-------RNLSKRYGSRKGLFVRERGEVKAVD 308
Query: 131 GYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS---- 183
+ G ++G + SGKSTL R +AG LP S+ G + +G ++ G
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRL 365
Query: 184 -----YGFVERETTLIGSLTVREYL--------YYSA---------LLQLPGF---FCQR 218
F + ++L +TV + L S LL+L G F R
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR 425
Query: 219 K-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL----LMMVT--LKKL-AST 270
+ L G+R+RV IAR L + P +L +DEP VSAL V LK L
Sbjct: 426 YPHELSGGQRQRVAIARALALEPKLLILDEP------VSALDVSVQAQVLNLLKDLQEEL 479
Query: 271 GCTLLF 276
G T LF
Sbjct: 480 GLTYLF 485
|
Length = 539 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 53/227 (23%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+L+ ++ G+R + PG + I+GP +GKSTLL+A++G L + GE
Sbjct: 6 NLSYSLAGRRLLDGVSLD-----LRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GE 57
Query: 170 VFVNG-AKSEMPYG---------------SYGFVERETTLIGSL-------------TVR 200
V +NG + P ++ F +E +G +
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 201 EYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL------VMRPHVLFIDEPLYHLDS 254
+ L + L L G + +G GE++RV++AR L V LF+DEP LD
Sbjct: 118 QALAATDLSGLAGRDYRTLSG---GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
Query: 255 VSALLMMVTLKKLASTG---CTLLFTINQSSTEVFGLFDRICLLSNG 298
+ ++LA G +L +N ++ DRI LL G
Sbjct: 175 AHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA----DRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+GP+ SGKSTL R I G L ++ G V ++GA + +
Sbjct: 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGA--------------DISQW 69
Query: 195 GSLTVREYLYYSALLQ----LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
+ +++ Y L Q G +N L G+R+R+ +AR L P +L +DEP
Sbjct: 70 DPNELGDHVGY--LPQDDELFSGSI--AENILSGGQRQRLGLARALYGNPRILVLDEPNS 125
Query: 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
HLD + + L + G T + ++ T DRI +L +G
Sbjct: 126 HLDVEGERALNQAIAALKAAGATRIVIAHRPET--LASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-11
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERET 191
G + GP SGK+TLLR +AG P A G V +NG + S ++
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIARGLLYLGHAP 82
Query: 192 TLIGSLTVREYLYY-----------SALLQ--LPGFFCQRKNGLPCGERRRVRIARELVM 238
+ +L+V E L + AL + L GF + L G++RRV +AR L+
Sbjct: 83 GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS 142
Query: 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
+ +DEP LD + + G ++ T +Q
Sbjct: 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 33/189 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
G + IMGP+ +GKSTLL IAG + P S G + VN A + P S F
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPAS----GSIKVNDQSHTGLAPYQRPV-SMLF-- 76
Query: 189 RETTLIGSLTVREY--------LYYSALLQ-----------LPGFFCQRKNGLPCGERRR 229
+E L LTVR+ L +A Q + + + L G+R+R
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136
Query: 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289
V +AR LV +L +DEP LD + M+ +K+L S L + ++ +
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196
Query: 290 DRICLLSNG 298
+I ++S G
Sbjct: 197 SQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-11
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 24/120 (20%)
Query: 150 STLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSY-----GFVERETTLIGSLTVREYL 203
STLL+ I G L ++ G + ++G + + G V ++ L LTVRE L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 204 YYSAL--------------LQLPGFFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEP 248
++ + LP F + L G+++RV IAR L+ +P +L +DEP
Sbjct: 58 FFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 40/213 (18%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT 198
++GP+ GK+TLLR +AG + + M V + + V + L +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH--INMVFQSYALFPHMT 58
Query: 199 VREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMR 239
V E + + L+QL F ++ + L G+++RV +AR LV +
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFK 118
Query: 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLFDRICLLSN 297
P +L +DEPL LD M + LK + G T +F T +Q E + DRI ++
Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--EAMTMSDRIAIMRK 176
Query: 298 GNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 330
G + G P I + P++ F
Sbjct: 177 GK-------------IAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVF---VNGAKSEMPYG---SYGFV 187
PG + ++ GP+ SGK+TLL I G R + +V + GA + + G++
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL--KVLGQELYGASEKELVQLRRNIGYI 87
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKN---------------------GLPCGE 226
+ L+G LT R+ + + LQ P Q L G+
Sbjct: 88 FQAHNLLGFLTARQNVQMALELQ-PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQ 146
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEV 285
++RV IAR LV RP ++ DEP LDS S ++ ++KLA GCT+L + + +
Sbjct: 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN--RI 204
Query: 286 FGLFDRICLLSNG 298
+ DRI + +G
Sbjct: 205 LDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 4e-11
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 48/204 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY-------GF 186
G + ++G +GK+TLL+ I G LP G + +G + +P + G+
Sbjct: 25 EGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLP--PHERARAGIGY 79
Query: 187 V--ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNG----------------------- 221
V R + LTV E L L + +R
Sbjct: 80 VPEGRR--IFPELTVEENL------LLGAYARRRAKRKARLERVYELFPRLKERRKQLAG 131
Query: 222 -LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
L GE++ + IAR L+ RP +L +DEP L + +++L G T+L + Q
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL-VEQ 190
Query: 281 SSTEVFGLFDRICLLSNGNTLFFG 304
++ + DR +L G + G
Sbjct: 191 NARFALEIADRAYVLERGRVVLEG 214
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 36/217 (16%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNG----A 175
+K + G +T ++GP+ GKSTLLR + L A GEV ++G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 176 KSEMPYG---SYGFVERETTLIGSLTVREYLYYSALLQ--------------------LP 212
G V ++ ++ + + Y L L
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW 130
Query: 213 GFFCQRKNGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
R + L G+++R+ +AR L P VL +DEP LD +S + + +L
Sbjct: 131 DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE 190
Query: 271 GCTLLFTIN-QSSTEVFGLFDRICLLSNGNTLFFGET 306
++ T N Q + V DR L NG + FG T
Sbjct: 191 YTIVIVTHNMQQAARV---ADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 20/196 (10%)
Query: 131 GYALPGT-MTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEM--PYG-S 183
+ LP +T + GP+ SGK++L+ IAG P R+ G V V+ K P
Sbjct: 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77
Query: 184 YGFVERETTLIGSLTVREYLYYS-------------ALLQLPGFFCQRKNGLPCGERRRV 230
G+V ++ L TVR L Y ALL + + L GE++RV
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRV 137
Query: 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290
I R L+ P +L +DEPL LD ++ L++L + ++ S EV L D
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLAD 197
Query: 291 RICLLSNGNTLFFGET 306
R+ +L NG G
Sbjct: 198 RVVVLENGKVKASGPL 213
|
Length = 352 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-11
Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK------SEMPYGSYGFVE 188
G +T I+GP+ SGKSTLL IAG P S G V +NG ++ P +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS----GRVLINGVDVTAAPPADRPVSM---LF 76
Query: 189 RETTLIGSLTVREYL-----------------YYSALLQ--LPGFFCQRKNGLPCGERRR 229
+E L LTV + + AL + L G + L GER+R
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQR 136
Query: 230 VRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288
V +AR LV VL +DEP LD ++ A ++ + L A T T+L +Q + L
Sbjct: 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRL 195
Query: 289 FDRICLLSNG 298
R+ L NG
Sbjct: 196 AQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-----K 176
+ N G +T ++G + +GKSTLL + G L + GE+ VNG
Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLS 389
Query: 177 SEMPYGSYGFVE----------RETTLIGSLTVREYLYYSALLQ--LPGFFCQRK----- 219
E +V RE L+ + +AL Q L F +
Sbjct: 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTV 449
Query: 220 -----NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
GL G+ +R+ +AR L+ +L +DEP HLD+ + +++ L++LA L
Sbjct: 450 IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVL 509
Query: 275 LFT 277
+ T
Sbjct: 510 VIT 512
|
Length = 559 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 9e-11
Identities = 54/210 (25%), Positives = 79/210 (37%), Gaps = 68/210 (32%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ IK + + D V+K + G + VI+GP+ SGKSTLLR I + G +
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTI 57
Query: 171 FVNG--------------AKSEMPYGSYGFVERETTL----IGSLTVR------------ 200
++G K M + + T L + + V+
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 201 EYL----------YYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
E L Y A QL G G+++RV IAR L M P V+ DEP
Sbjct: 118 ELLEKVGLADKADAYPA--QLSG-----------GQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 251 HLDSVSALLMMV-----TLKKLASTGCTLL 275
LD +V +K LA G T++
Sbjct: 165 ALDP-----ELVGEVLDVMKDLAEEGMTMV 189
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 50/229 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYG------SYGFV 187
G V++GP+ SGK+T ++ I RL P S GE+F++G + G+V
Sbjct: 27 GEFLVLIGPSGSGKTTTMKMI-NRLIEPTS----GEIFIDG-EDIREQDPVELRRKIGYV 80
Query: 188 ERETTLIGSLTVRE-------YLYYSA---------LLQL----PGFFCQRKNG-LPCGE 226
++ L +TV E L + LL L P F R L G+
Sbjct: 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQ 140
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEV 285
++RV +AR L P +L +DEP LD ++ + K+L G T++F + E
Sbjct: 141 QQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF-VTHDIDEA 199
Query: 286 FGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 334
F L DRI ++ NG + G P I++SP++ F+
Sbjct: 200 FRLADRIAIMKNGEIVQVGT-------------PDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPY--GSYGF 186
G + GP+ +GKSTLL+ I G + G++ VNG E+P+ G
Sbjct: 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGV 83
Query: 187 VERETTLIGSLTVREYLYY----------------SALLQLPGFFCQRKNGLPC----GE 226
V ++ L+ TV E + S +L L G + LP GE
Sbjct: 84 VFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGE 142
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
++RV IAR +V +P VL DEP +LD + +M +++ G T+L
Sbjct: 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191
|
Length = 223 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 40/221 (18%)
Query: 87 PSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAK 146
PL A V A S+ + ++V G+ ++ + PG ++GP+
Sbjct: 304 APRPLAGKAPVTAAPA-PSLEFSGVSVAYPGR----RPALRPVSFTVPPGERVALVGPSG 358
Query: 147 SGKSTLLRAIAG-RLPHSARMYGEVFVNGAK----------------SEMPYGSYGFVER 189
+GKSTLL + G P G + VNG + P+ G +
Sbjct: 359 AGKSTLLNLLLGFVDPTE----GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI-A 413
Query: 190 ETTLIG-----SLTVREYLYYSALLQ----LPGFFC----QRKNGLPCGERRRVRIAREL 236
E + +RE L + L + LP + GL G+ +R+ +AR
Sbjct: 414 ENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAF 473
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 277
+ +L +DEP HLD+ + ++ L+ LA LL T
Sbjct: 474 LRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 84 GSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMG 143
GS P LP AR IA +++ + I ++ ++K ++G P MT+++G
Sbjct: 146 GSRALPTLPN---AARNIAESALG----MLGINLAKKTKLTILKDASGIIKPSRMTLLLG 198
Query: 144 PAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVRE 201
P SGK+TLL A+AG+L S ++ GE+ NG + +P + ++ + +G +TV+E
Sbjct: 199 PPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258
Query: 202 YLYYSALLQ 210
L +SA Q
Sbjct: 259 TLDFSARCQ 267
|
Length = 1470 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-10
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 52/154 (33%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY 167
++L+ T GK ++K + PG ++G +GKSTLL+ IAG L P
Sbjct: 4 ENLSKTYGGK-----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---- 54
Query: 168 GEVFVNGAKSEMPYGSYGFVER-ETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGE 226
G V T IG Y+ QL G GE
Sbjct: 55 -----------------GIVTWGSTVKIG--------YFE---QLSG-----------GE 75
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 258
+ R+ +A+ L+ P++L +DEP HLD S+ AL
Sbjct: 76 KMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS--YGFVERET 191
G + +MGP+ GKSTLL + G L GE+++N + +M P G + ++
Sbjct: 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86
Query: 192 TLIGSLTV----------------REYLYYSALLQ--LPGFFCQRKNGLPCGERRRVRIA 233
L L+V R +AL + L G F Q L G+R RV +
Sbjct: 87 LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALL 146
Query: 234 RELVMRPHVLFIDEPLYHLD 253
R L+ +P L +DEP LD
Sbjct: 147 RALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 8e-10
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 40/232 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + GKSTLL I+G P S G V + G + P V + +L
Sbjct: 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTS----GGVILEGKQITEPGPDRMVVFQNYSL 65
Query: 194 IGSLTVREYLYYS---------------------ALLQLPGFFCQRKNGLPCGERRRVRI 232
+ LTVRE + + AL+ L +R L G ++RV I
Sbjct: 66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAI 125
Query: 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDR 291
AR L +RP VL +DEP LD+++ + L ++ T+L + E L DR
Sbjct: 126 ARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVDEALLLSDR 184
Query: 292 ICLLSNGNTLFFGETLACLQHFSNAGFPCP-----IMQSPSDHFLRAINTDF 338
+ +L+NG G+ L FP P +++ PS + LR F
Sbjct: 185 VVMLTNGPAANIGQIL-------EVPFPRPRDRLEVVEDPSYYDLRNEALYF 229
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 49/201 (24%), Positives = 69/201 (34%), Gaps = 37/201 (18%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L+V+ K + + G ++G + SGKSTL RAI G G
Sbjct: 5 KNLSVSFPTGGGSV-KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG---LLKPTSG 60
Query: 169 EVFVNG-----AKSEM--------------PYGSYGFVER-ETTLIGSLTVREYLYYSAL 208
+ +G + P S + L + L
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 209 LQLPGFFCQRKNGLPC------------GERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256
+ GLP G+R+RV IAR L + P +L DEP LD
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 257 ALLMMVTLKKLAS-TGCTLLF 276
++ LKKL G TLLF
Sbjct: 181 QAQILDLLKKLQEELGLTLLF 201
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERE 190
G + ++GP +GK+T ++ + L ++ G V G + G V ++
Sbjct: 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVRRRIGIVFQD 81
Query: 191 TTLIGSLTVREYLYYSALLQ-LPG------------FF--CQRKNGLPC----GERRRVR 231
++ LT E LY A L +PG F + + L G RRR+
Sbjct: 82 LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLE 141
Query: 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFD 290
IAR LV RP VLF+DEP LD + + ++KL G T+L T E L D
Sbjct: 142 IARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCD 200
Query: 291 RICLLSNG 298
R+ ++ +G
Sbjct: 201 RVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 40/170 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL- 193
PG +I GP+ +GKS+L RA+AG P +G G G E E L
Sbjct: 26 PGDRLLITGPSGTGKSSLFRALAGLWP-----WGS------------GRIGMPEGEDLLF 68
Query: 194 ------IGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247
+ T+RE L Y L G GE++R+ AR L+ +P +F+DE
Sbjct: 69 LPQRPYLPLGTLREQLIYPWDDVLSG-----------GEQQRLAFARLLLHKPKFVFLDE 117
Query: 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297
LD S + LK+L G T++ ++ S F DR+ L
Sbjct: 118 ATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWKF--HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TL 193
G I+GP +GKSTLL+ +AG L + G V G ++ G+ ++ L
Sbjct: 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTV-KVGETVKI-----GYFDQHRDEL 397
Query: 194 IGSLTVREYL----------YYSALLQLPGF----FCQRKNGLPCGERRRVRIARELVMR 239
TV E L A L GF + L GE+ R+ +A+ L+
Sbjct: 398 DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 240 PHVLFIDEPLYHLD--SVSAL 258
P++L +DEP HLD S+ AL
Sbjct: 458 PNLLLLDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-----------------RLPHSARMYGEVFVNGA--- 175
G ++GP+ GK+TLLR IAG RLP R YG VF + A
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFP 89
Query: 176 ----KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NGLPCGERRR 229
+ YG + V E L L+ LPG +RK L G+++R
Sbjct: 90 NLTVADNIAYGLKN-RGMGRAEVAE-RVAELL---DLVGLPG--SERKYPGQLSGGQQQR 142
Query: 230 VRIARELVMRPHVLFIDEPLYHLDS-VSALL---MMVTLKKLASTGCTLLFTINQSSTEV 285
V +AR L P +L +DEPL LD+ V L + ++L T T++ T +Q E
Sbjct: 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT--TIMVTHDQE--EA 198
Query: 286 FGLFDRICLLSNG 298
+ DRI ++++G
Sbjct: 199 LSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++++ + K ++ + G + + G +GK+TL + +AG + S+ G
Sbjct: 3 ENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---G 55
Query: 169 EVFVNG--AKSEMPYGSYGFVERETTL-IGSLTVREYLYYSA---------------LLQ 210
+ +NG K++ S G+V ++ + + +VRE L L
Sbjct: 56 SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP-----LYHLDSVSALLMMVTLK 265
L + L G+++R+ IA L+ +L DEP +++ V L ++
Sbjct: 116 LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL-----IR 170
Query: 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
+LA+ G + I + + DR+ LL+NG
Sbjct: 171 ELAAQG-KAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G + GP+ +GK+TLL+ + G L S G+V + G ++P G
Sbjct: 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQLPLLRRRIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNG------------------LPCGER 227
V ++ L+ TV E + ++ QR+ G L GE+
Sbjct: 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQ 143
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 277
+RV IAR +V P +L DEP +LD + ++ LK+L G T++
Sbjct: 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 52/209 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G + ++G +GK+TLL+ I G + + G + +G A+ +
Sbjct: 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHERARLGI---- 80
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNG---------------------- 221
+V + LTV E L L + + K
Sbjct: 81 -AYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 222 ---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFT 277
L GE++ + IAR L+ RP +L +DEP L + +K+L G T+L
Sbjct: 134 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL- 192
Query: 278 INQSSTEVFGLFDRICLLSNGNTLFFGET 306
+ Q++ + DR +L NG + G
Sbjct: 193 VEQNARFALEIADRGYVLENGRIVLSGTA 221
|
Length = 237 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 61/254 (24%)
Query: 90 PLPEGAAVARKIAGAS--VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKS 147
P P+ I + K+++V GK K++ + PG I+GP +
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGA 68
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG------------ 195
GK+TLL + G P S+ G+V + G G F R+ IG
Sbjct: 69 GKTTLLSLLTGEHPPSS---GDVTLLG--RRFGKGETIFELRKR--IGLVSSELHERFRV 121
Query: 196 SLTVREY----------LYY-----------SALLQLPGF-------FCQRKNGLPCGER 227
TVR+ +Y LL+L G F L GE+
Sbjct: 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS----LSQGEQ 177
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEV 285
RRV IAR LV P +L +DEP LD ++ ++ L++LA++ LLF + + E+
Sbjct: 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF-VTHHAEEI 236
Query: 286 FGLFDRICLLSNGN 299
F LL G
Sbjct: 237 PPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-09
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + ++G +GKSTL++ ++G + GE+ V+G + I
Sbjct: 25 RGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGK----EVSFASPRDARRAGI 77
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
V QL GER+ V IAR L +L +DEP L
Sbjct: 78 A--MV---------YQLSV-----------GERQMVEIARALARNARLLILDEPTAALTP 115
Query: 255 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
+ +++L + G ++F I+ EVF + DR+ +L +G
Sbjct: 116 AEVERLFKVIRRLRAQGVAVIF-ISHRLDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 46/235 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYG--------SYG 185
G + VIMG + SGKSTLLR I + ++ G+V ++G + M
Sbjct: 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELRELRRKKIS 105
Query: 186 FVERETTLIGSLTVREYLYYSALLQ-------------------LPGFFCQRKNGLPCGE 226
V + L+ TV E + + +Q L G+ + + L G
Sbjct: 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGM 165
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEV 285
++RV +AR L + P +L +DE LD + M L +L A T++F I E
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF-ITHDLDEA 224
Query: 286 FGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 340
L DRI ++ +G + G P I+ +P++ ++R DR
Sbjct: 225 LRLGDRIAIMKDGRLV-------------QVGTPEEILTNPANDYVREFFRGVDR 266
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
YSD +K N G +T I+G +GKSTL + + G L S+ G + +G
Sbjct: 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDG--K 68
Query: 178 EMPYGSYGFVE-RETTLIG-----------SLTVREYLYYSAL-LQLPGFFCQRK----- 219
+ Y G ++ RE+ +G S +V + + + A+ L+LP +++
Sbjct: 69 PIDYSRKGLMKLRES--VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNAL 126
Query: 220 -------------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
+ L G+++RV IA LVM P VL +DEP LD + +M L +
Sbjct: 127 KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 267 LAS-TGCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 304
+ G T++ I ++ L+ D + ++ G + G
Sbjct: 187 MQKELGLTII--IATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 48/173 (27%), Positives = 64/173 (36%), Gaps = 40/173 (23%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G I GP +GK+TLLR +AG L A GEV+ G + SY +
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY---HQALLY 79
Query: 194 IG-------SLTVREYL-YYSALLQ---------------LPGFFCQRKNGLPC-----G 225
+G LT E L ++ L G LP G
Sbjct: 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-----EDLPVGQLSAG 134
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 277
++RRV +AR + + +DEP LD ALL + A G LL T
Sbjct: 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTT 187
|
Length = 209 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 66/228 (28%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 95 AAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLL 153
A A S V DL K Y DK V + + + G ++GP +GKST+
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKS---YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA 84
Query: 154 RAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYL-----Y 204
R I G A G++ V G A++ + G V + L TVRE L Y
Sbjct: 85 RMILGMTSPDA---GKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 141
Query: 205 Y-----------SALLQLPGFFCQ---RKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
+ +LL+ + R + L G +RR+ +AR L+ P +L +DEP
Sbjct: 142 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
Query: 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
LD + L+ L+ L + G T+L T E L DR+C+L G
Sbjct: 202 GLDPHARHLIWERLRSLLARGKTILLT-THFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 5e-09
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G V+ GP SGK+TLLR IAG LP +A G + ++G + P V +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPD-----VAEACHYL 78
Query: 195 G-------SLTVREYL-YYSALL--------------QLPGFFCQRKNGLPCGERRRVRI 232
G +LTV E L +++A L L L G++RRV +
Sbjct: 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVAL 138
Query: 233 ARELVMRPHVLFIDEPLYHLDS 254
AR LV + +DEP LD+
Sbjct: 139 ARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 44/146 (30%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G +T ++G GK+TLL+ + G LP + G + ++G A++ + Y
Sbjct: 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHERARAGIAYVP 81
Query: 184 YGFVERETTLIGSLTVRE--------------------YLYYSALLQLPGFFCQRKNG-L 222
G RE + LTV E Y + L + R+ G L
Sbjct: 82 QG---RE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE----MLGRRGGDL 132
Query: 223 PCGERRRVRIARELVMRPHVLFIDEP 248
G+++++ IAR LV RP +L +DEP
Sbjct: 133 SGGQQQQLAIARALVTRPKLLLLDEP 158
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 45/191 (23%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK-SEMP---------YGSYGFVER 189
++GP+ GK+T+LR IAG P S G + ++G + +P + SY
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDS----GRIMLDGQDITHVPAENRHVNTVFQSYA---- 96
Query: 190 ETTLIGSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRV 230
L +TV E + + ++QL F ++ + L G+++RV
Sbjct: 97 ---LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRV 153
Query: 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLF-TINQSSTEVFGL 288
IAR +V +P VL +DE L LD M LK L G T +F T +Q E +
Sbjct: 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE--EALTM 211
Query: 289 FDRICLLSNGN 299
DRI ++ +G
Sbjct: 212 SDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 60/242 (24%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----------------KSEM 179
G + VIMG + SGKSTL+R + + + GE+ V+G K M
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTR---GEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ-------------------LPGFFCQRKN 220
+ S+ L+ TV E + + +Q L G+ + N
Sbjct: 111 VFQSFA-------LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTIN 279
L G ++RV +AR L P +L +DE LD + M L +L A T++F I
Sbjct: 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF-IT 222
Query: 280 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFD 339
E + DRI ++ +G +Q G P I+ +P++ ++R + D
Sbjct: 223 HDLDEALRIGDRIAIMKDGEI---------VQV----GTPEEILLNPANDYVRDFVRNVD 269
Query: 340 RI 341
R
Sbjct: 270 RS 271
|
Length = 386 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 39/220 (17%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
S+ LT K + + + A G + +GP +GKST ++ I G LP +
Sbjct: 2 SIRVSSLT-----KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS 56
Query: 165 RMYGEVFVNG------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSA----------- 207
G V V G K + G++ L + VREYL + A
Sbjct: 57 ---GSVQVCGEDVLQNPKEVQR--NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK 111
Query: 208 -----LLQLPGFFC-QRK--NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259
+++L G Q K L G R+RV +A+ L+ P VL +DEP LD +
Sbjct: 112 QRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE 171
Query: 260 MMVTLKKLASTGCTLLFT-INQSSTEVFGLFDRICLLSNG 298
+ +K + +L T I Q EV + DR+ +++ G
Sbjct: 172 IRNVIKNIGKDKTIILSTHIMQ---EVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 29/187 (15%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YG----SYGFVERETTLIGS 196
GP +GK+T I G + + G++ ++G +++P + G++ +E ++
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 197 LTVR-------EYLYYS---------ALLQLPGFFCQRKN---GLPCGERRRVRIARELV 237
LTV E S LL+ RK+ L GERRRV IAR L
Sbjct: 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALA 149
Query: 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297
P L +DEP +D ++ + +K L G +L T + + E + DR ++
Sbjct: 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT-DHNVRETLSITDRAYIIYE 208
Query: 298 GNTLFFG 304
G L G
Sbjct: 209 GKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V++ GK ++K N G + +MGP SGKSTL + I G P G
Sbjct: 4 KDLHVSVGGKE-----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEG 57
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE------YLYYSALLQLPG----FFCQR 218
E+ G I L E +L + ++PG F +
Sbjct: 58 EILFKG-----------------EDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100
Query: 219 KN-GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLL 275
N G GE++R I + L++ P + +DEP LD + AL ++ + KL G ++L
Sbjct: 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVAEVINKLREEGKSVL 158
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 28/155 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG +P+ G + ++G E P G V + L+
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERGVVFQNEGLL 82
Query: 195 GSLTV----------------------REYLYYSALLQLPGFFCQRKNGLPCGERRRVRI 232
V + L + L G + L G+R+RV I
Sbjct: 83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQML---KKVGLEGAEKRYIWQLSGGQRQRVGI 139
Query: 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
AR L P +L +DEP LD+ + M L KL
Sbjct: 140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 29/214 (13%)
Query: 110 DLTVTIKGKRR-YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
++ + + G + Y DKVV + + + G ++GP +GKST+ R + G +
Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR--- 58
Query: 168 GEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYL-----YYS-----------A 207
G++ V G +++ + + G V + L TVRE L Y+ +
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS 118
Query: 208 LLQLPGFFCQ---RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 264
LL+ + R L G +RR+ +AR L+ P +L +DEP LD + L+ L
Sbjct: 119 LLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178
Query: 265 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
+ L + G T+L T E L DR+C+L +G
Sbjct: 179 RSLLARGKTILLT-THFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 102/477 (21%), Positives = 200/477 (41%), Gaps = 46/477 (9%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTIN 279
G+ G+++RV +V LF+DE LDS + ++ L+++ T T+L ++
Sbjct: 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLL 395
Query: 280 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFD 339
Q + E F LFD I LLS G ++ G L+ F + GF CP + +D FL+ + + D
Sbjct: 396 QPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTAD-FLQEVTSKKD 454
Query: 340 RIIAMCKSWQDDHGDFSSVNM-DTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLK 398
+ + W D + + +++ + A ++ Q + + PF K
Sbjct: 455 QE----QYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSV-------------PFDK 497
Query: 399 SKG-KAS------SATRVAVL--TW-RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL 448
S+ KA+ S ++ +L W + L+M R Y + + +I+ TVF L
Sbjct: 498 SQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVF--L 555
Query: 449 GHSLSSVVTRVAAIFV-FVSFNSLLNI----AGVPALMKEIKTYASEESNMHSGALVFLL 503
+ + A+++ + F+ ++N+ A + +++ + + + + F L
Sbjct: 556 RTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTL 615
Query: 504 GQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK 563
L IP + S+ ++ Y+ +G E S +L F+ + G+ ++AS+ +
Sbjct: 616 PTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCR 675
Query: 564 DVYWSILTLISVHVVMMLSAGYFRIRNALP-GPVWTYPISYVAFHTYSIKGLLENEYLGT 622
+ + V +++ L G+ + +P W Y +S + +Y L NE
Sbjct: 676 TMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPL---SYGFNALAVNEMFAP 732
Query: 623 SF---PVGQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLL-FVLLYL 675
+ T G L +D+ + N W + L I + +L L YL
Sbjct: 733 RWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
|
Length = 1470 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERET 191
G + +GP +GK+T +R + L ++ G V G + S G V +
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 192 TLIGSLTVREYLY-YSALLQLP-----------------GFFCQRKNG-LPCGERRRVRI 232
++ LT RE L L LP G R G G RRR+ I
Sbjct: 76 SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDI 135
Query: 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292
A L+ +P VLF+DEP LD + + ++ L G T+L T E L DRI
Sbjct: 136 AASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT-THYMEEADKLCDRI 194
Query: 293 CLLSNGNTLFFG 304
++ +G + G
Sbjct: 195 AIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 38/159 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G I+GP+ SGKSTLL +AG P S GEV + G A++ +
Sbjct: 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLHKLDEDARAALRARHV 90
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGF---------------FCQRKNGLPC----G 225
GFV + LI +LT E + L+ +R P G
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGG 150
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALL 259
E++RV +AR RP VLF DEP +LD ++ LL
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 67/244 (27%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARM 166
DL+V K K + S + P +T ++GP+ SGKSTLLR+I L +
Sbjct: 9 SDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 167 YGEVFVNGA------------KSEM----------PYGSY----------GFVER----- 189
G + NG + E+ P Y G ++
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE 123
Query: 190 --ETTLIGSLT---VREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244
E +L G+ V++ L+ SAL GL G+++RV IAR L P ++
Sbjct: 124 AVEKSLKGASIWDEVKDRLHDSAL------------GLSGGQQQRVCIARVLATSPKIIL 171
Query: 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT--INQSSTEVFGLFDRICLLSNGNTLF 302
+DEP LD +SA + TL L LL T + Q+S + DR +G+ +
Sbjct: 172 LDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASR----ISDRTGFFLDGDLIE 227
Query: 303 FGET 306
+ +T
Sbjct: 228 YNDT 231
|
Length = 252 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 422 REWKYYW-------LRLILCMILTLCVGTVFSGLG---HSLSSVVTRVAAIFVFVSFNSL 471
++W YW +R + L VGT+F +G + + + + A++ V F +
Sbjct: 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGI 1260
Query: 472 LNIAGVPALMKEIKT--YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVG 529
N + V ++ +T Y + M+S AL + + Q++ IP++ + + +L+ Y +V
Sbjct: 1261 NNCSTVQPMVAVERTVFYRERAAGMYS-ALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319
Query: 530 LRDEFSLLMYFV-LNFFMCL-LVNEGLMLV-------VASIWKDVYWSILTLISVHVVMM 580
+ +F ++FF L G+M V VA+I+ ++ + L S
Sbjct: 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS------ 1373
Query: 581 LSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKGLLENEY 619
G+F R +P VW Y I VA+ Y GL+ ++Y
Sbjct: 1374 ---GFFIPRPKIPKWWVWYYWICPVAWTVY---GLIVSQY 1407
|
Length = 1470 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + SGKSTLL+ + G L P GE+ ++G P L
Sbjct: 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ----GEITLDGV----PVSDLEKALSS--L 76
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253
I L R YL+ + L G +R +G GER+R+ +AR L+ ++ +DEP LD
Sbjct: 77 ISVLNQRPYLFDTTLRNNLG---RRFSG---GERQRLALARILLQDAPIVLLDEPTVGLD 130
Query: 254 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
++ ++ + ++ + T + + E D+I L NG + G
Sbjct: 131 PITERQLLSLIFEVLKDKTLIWITHHLTGIEH---MDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 23/163 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERE 190
G + GP GK+TLLR +AG L + GEV NG ++
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPHRNILYLGHL 81
Query: 191 TTLIGSLTVREYL-YYSALLQ--------------LPGFFCQRKNGLPCGERRRVRIARE 235
L L+ E L +++A+ L GF L G++RR+ +AR
Sbjct: 82 PGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARL 141
Query: 236 LVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 277
+ R + +DEP LD ALL + LA G LL T
Sbjct: 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 34/180 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG +I G + +GK++LLRA+AG P +G + MP S + +
Sbjct: 418 PGERLLITGESGAGKTSLLRALAGLWP-----WGS-----GRISMPADSALLFLPQRPYL 467
Query: 195 GSLTVREYLYY------------SALLQLPGF--FCQRKNG-------LPCGERRRVRIA 233
T+RE L Y A+L G +R + L GE++R+ A
Sbjct: 468 PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293
R L+ +P +F+DE LD + + LK+ T++ ++ + F R
Sbjct: 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPTLWNF--HSRQL 584
|
Length = 604 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 63/248 (25%), Positives = 103/248 (41%), Gaps = 40/248 (16%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L P E K S+ +++++ + GK+ V+K + PG I+GP+
Sbjct: 309 LDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK----PVLKDISFSIEPGEKVAIVGPS 364
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVR 200
SGKSTL++ + ++ GE+ ++G ++ S G V ++ L S T+R
Sbjct: 365 GSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLDSLRKRIGIVSQDPLLF-SGTIR 420
Query: 201 EYLYYSA-------------LLQLPGFFCQRKNGL--PCGE---------RRRVRIAREL 236
E + L F +G GE R+R+ IAR L
Sbjct: 421 ENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
+ P +L +DE LD+ + L+ LKKL TL+ S+ + DRI +L
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIK---NADRIIVLD 537
Query: 297 NGNTLFFG 304
NG + G
Sbjct: 538 NGRIVERG 545
|
Length = 567 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 60/231 (25%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAG-RLPHS 163
VV K++T +R+ V + + GTM ++GP+ GK+T+LR +AG P
Sbjct: 7 VVLKNIT------KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 164 ARMYGEVFVNG---AKSE-------MPYGSYGFV---------------------ERETT 192
G++F++G M + SY ER+
Sbjct: 61 ----GQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR 116
Query: 193 LIGSLTVREYLYYSALLQLPGF---FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249
V+E L L+ L GF + + +G G+++RV +AR L+++P VL DEPL
Sbjct: 117 ------VKEAL---ELVDLAGFEDRYVDQISG---GQQQRVALARALILKPKVLLFDEPL 164
Query: 250 YHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
+LD+ M +++L T L+ + +E F + D + +++ G
Sbjct: 165 SNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGK 214
|
Length = 351 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM--PY---GSYGFVE 188
G I+G SGKSTLL+ +AG P S G V ++G P + G+V
Sbjct: 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTS----GSVLLDGTDIRQLDPADLRRNIGYVP 84
Query: 189 RETTLIGSLTVREYLYYSALL--------------------QLP-GFFCQ---RKNGLPC 224
++ TL T+R+ + A L + P G Q R GL
Sbjct: 85 QDVTLF-YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284
G+R+ V +AR L+ P +L +DEP +D S + L++L ++ T S
Sbjct: 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS--- 200
Query: 285 VFGLFDRICLLSNG 298
+ L DRI ++ +G
Sbjct: 201 LLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 44/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I G S+ G V G + +P +
Sbjct: 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLP--PHRIARLGIAR 83
Query: 190 ---ETTLIGSLTVRE--------YLYYSALLQLPGFFCQRKN------------------ 220
T L LTV E L S LL P + +
Sbjct: 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA 143
Query: 221 -----GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
L G++RR+ IAR L +P +L +DEP L+ + +++L G +
Sbjct: 144 DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTI 203
Query: 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 305
I V GL DRI +L+ G + G
Sbjct: 204 LLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 5e-08
Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 74/238 (31%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V + G+ ++ + PG + I+GP +GKSTLLRA++G L + G
Sbjct: 6 RNLSVRLGGRT-----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---G 57
Query: 169 EVFVNGAKSEMPYGSYGFVER---------ETTLIGSLTVRE------------------ 201
EV +NG P + E ++L TV E
Sbjct: 58 EVRLNGR----PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA 113
Query: 202 ----YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV------MRPHVLFIDEPLYH 251
L L L G + +G GE++RV++AR L P L +DEP
Sbjct: 114 LVAAALAQVDLAHLAGRDYPQLSG---GEQQRVQLARVLAQLWEPDGPPRWLLLDEP--- 167
Query: 252 LDSVSAL------LMMVTLKKLASTG----CTLLFTINQSSTEVFGLF-DRICLLSNG 298
SAL ++ ++LA +L +N ++ + DRI LL G
Sbjct: 168 ---TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 46/176 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G ++G + SGKSTLL +AG S+ GEV + G A++++ G
Sbjct: 35 RGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEARAKLRAKHVG 91
Query: 186 FVERETTLIGSLTVREYLYYSALL-----------------QLPGFFCQRKNGLPC---- 224
FV + LI +L E + ALL QL +R + LP
Sbjct: 92 FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLG--LGKRLDHLPAQLSG 149
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
GE++RV +AR RP VLF DEP +LD T K+A LLF++N+
Sbjct: 150 GEQQRVALARAFNGRPDVLFADEPTGNLDR-------QTGDKIAD----LLFSLNR 194
|
Length = 228 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 32/164 (19%)
Query: 117 GKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
G RR D V + + PG ++GP +GKSTL ++ RL + G++ V G
Sbjct: 12 GARRALDDV-----SFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQE--GQISVAGH 63
Query: 176 --KSEMP--YGSYGFVERETTLIGSLTVREYL-YYSAL------------------LQLP 212
+ G V ++ TL L+VR+ L Y++AL L L
Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLA 123
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256
+ L G RRRV IAR L+ RP +L +DEP LD S
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 36/193 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG I+G + SGKSTLL+ + G G + ++G +++ S G+V +
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLASLRRQVGYVLQ 554
Query: 190 ETTLIGSLTVREYLYYSA----------LLQLPG---FFCQRKNG-----------LPCG 225
+ L ++RE + QL G F G L G
Sbjct: 555 DPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285
+R+R+ +AR L+ +P +L +DE LD + +++ L ++ G T++ ++ ST
Sbjct: 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLST-- 670
Query: 286 FGLFDRICLLSNG 298
DRI +L G
Sbjct: 671 IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 26/204 (12%)
Query: 118 KRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVN 173
++RY DK+V + + G ++GP +GK+T LR + G A + GE +
Sbjct: 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73
Query: 174 GAKSEMPYGSYGFVERETTLIGSLTVREYL-----YY-----SALLQLPGF--FCQRKN- 220
A+ G V + L TVRE L Y+ +A +P F + +N
Sbjct: 74 RAR--HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK 131
Query: 221 ------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
L G +RR+ +AR LV P VL +DEP LD + LM L+ L + G T+
Sbjct: 132 ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTI 191
Query: 275 LFTINQSSTEVFGLFDRICLLSNG 298
L T E L DR+C++ G
Sbjct: 192 LLT-THFMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 38/217 (17%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGA 175
KR+Y + + + G + +GP +GK+T L+ ++G L P S GEV V G
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS----GEVRVAG- 82
Query: 176 KSEMPYG-SYGFVER-------ETTLIGSLTVREYLYY-------------------SAL 208
+P+ F+ R +T L L V + Y S L
Sbjct: 83 --LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
Query: 209 LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL- 267
L L L G+R R IA L+ P +LF+DEP LD V+ + LK+
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 268 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
G T+L T + ++ L R+ ++ G L+ G
Sbjct: 201 RERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 41/212 (19%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
Y D + +K N A G M ++GP +GKSTL G L P S GEV + G
Sbjct: 10 SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS----GEVLIKGE- 64
Query: 177 SEMPYGSYGFVERETTL----------IGSLTVREYLYYSAL-LQLP------------- 212
+ Y +E T+ + + TV E + + L L L
Sbjct: 65 -PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALK 123
Query: 213 -----GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
GF + + L G+++RV IA L M+P ++ +DEP LD + A +M L L
Sbjct: 124 AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183
Query: 268 ASTGCTLLFTINQSSTEVFGLF-DRICLLSNG 298
G T++ I+ ++ ++ D++ ++S+G
Sbjct: 184 NKEGITII--ISTHDVDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 44/225 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----------------KSEM 179
G + VIMG + SGKST++R + RL R G+V ++G K M
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLL-NRLIEPTR--GQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 180 PYGSYGFVERETTLIGSL----------TVREYLYYSALLQ--LPGFFCQRKNGLPCGER 227
+ S+ + T L + R AL Q L + + L G R
Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMR 170
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
+RV +AR L + P +L +DE LD + M L KL + + I+ E
Sbjct: 171 QRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230
Query: 288 LFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLR 332
+ DRI ++ NG + G P I+ +P++ ++R
Sbjct: 231 IGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 39/229 (17%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A++ K+L KG+R D + ++G + ++GP +GK+T + G +P
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSG-----EIVGLLGPNGAGKTTTFYMVVGIVPRD 56
Query: 164 ARMYGEVFVNGAK-SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQLPGFFC- 216
A G + ++ S +P + G++ +E ++ L+V + L A+LQ+
Sbjct: 57 A---GNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSA 111
Query: 217 -QRKN--------------------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 255
QR++ L GERRRV IAR L P + +DEP +D +
Sbjct: 112 EQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
Query: 256 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
S + + ++ L +G +L T + + E + +R ++S G+ + G
Sbjct: 172 SVIDIKRIIEHLRDSGLGVLIT-DHNVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-07
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 37/158 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG + +I+GP SGK+TL RA+A L G ++++G E L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDI-----------LEEVLD 47
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHL 252
L + ++ R+R+A L + VL +DE L
Sbjct: 48 QLLLIIVGGKKASGSG----------------ELRLRLALALARKLKPDVLILDEITSLL 91
Query: 253 DSVSALLMM------VTLKKLASTGCTLLFTINQSSTE 284
D+ L++ + L + T++ T N
Sbjct: 92 DAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-07
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGS--YG--FVE 188
PG + ++G +GKSTL++ ++G P + GE+ ++G P + G V
Sbjct: 33 PGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIATVH 89
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRK-----------------------NGLPCG 225
+E +L+ +L+V E ++ RK L
Sbjct: 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIA 149
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDS--VSALLMMVTLKKLASTGCTLLFTINQSST 283
+R+ V IAR L VL +DEP L L ++ ++L + G +++ I+
Sbjct: 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI--RRLKAQGVAIIY-ISHRLD 206
Query: 284 EVFGLFDRICLLSNG 298
EVF + DRI +L +G
Sbjct: 207 EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSE 178
Y D+ + + LP G + + G +GK+TLL+ IAG L P GE+ +
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK----GEILFERQSIK 66
Query: 179 MPYGSYG----FVERETTLIGSLTVREYLYY-----SALLQLPG----FFCQRKNGLPCG 225
+Y FV + + LT+RE Y + + F + PCG
Sbjct: 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCG 126
Query: 226 -----ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
++R+V + R + + + +DEPL LD +S L ++ +++ + G +L T +Q
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 20/158 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL---------PHSARMYGEVFVNGAKSEMPYGSYG 185
PG + ++G + +GK+TLLR I G P S ++ EV N + +P G Y
Sbjct: 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNTVSALIP-GEYE 464
Query: 186 FVERETTLI-------GSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVM 238
E T++ G L + A L + ++ + L G++ R ++A+ L
Sbjct: 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE 524
Query: 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLL 275
RP+VL IDE HLD ++A+ + + +LA G TL+
Sbjct: 525 RPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
|
Length = 593 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 52/202 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG-------------AKSEMP 180
G + I+G + +GKSTL+R I G P S G V V+G A+ +
Sbjct: 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTS----GSVLVDGTDLTLLSGKELRKARRRI- 84
Query: 181 YGSYGFVERETTLIGSLTVREYLYY----------------SALLQLPGFFCQRKN---G 221
G + + L+ S TV E + LL+L G +
Sbjct: 85 ----GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLASTGCTLLF 276
L G+++RV IAR L P VL DE LD S+ ALL + ++L G T++
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN-REL---GLTIVL 196
Query: 277 TINQSSTEVFGLFDRICLLSNG 298
++ V + DR+ ++ G
Sbjct: 197 ITHEMEV-VKRICDRVAVMEKG 217
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 44/198 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVE--RET 191
G + I+G + +GKSTLLR I P S G VFV+G + + ++
Sbjct: 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTS----GSVFVDG-QDLTALSEAELRQLRQKI 85
Query: 192 TLI-------GSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCG 225
+I S TV E + + L+ L + L G
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGG 145
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLASTGCTLLFTINQ 280
+++RV IAR L P +L DE LD S+ LL + ++L G T++ I
Sbjct: 146 QKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN-REL---GLTIVL-ITH 200
Query: 281 SSTEVFGLFDRICLLSNG 298
V + DR+ +L G
Sbjct: 201 EMEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 53/203 (26%), Positives = 80/203 (39%), Gaps = 47/203 (23%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V ++GK+ +++K N G + IMGP SGKSTL I G P G
Sbjct: 7 KDLHVEVEGKK----EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEG 61
Query: 169 EVFVNGAK-SEMPYGSYGFVER----------ETTLIGSLTVREYL-------------- 203
E+ +G E+ ER I +T ++L
Sbjct: 62 EILFDGEDILELSPD-----ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGIL 116
Query: 204 --------YYSALLQLPGFFCQR--KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253
+ LL L F +R G GE++R I + L++ P + +DEP LD
Sbjct: 117 PEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
Query: 254 SVSALLMMV-TLKKLASTGCTLL 275
+ AL ++ + L G +L
Sbjct: 177 -IDALKIVAEGINALREEGRGVL 198
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 33/207 (15%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--------AK 176
V+K + G + ++G +GKSTL++ IAG +P + G + + G AK
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYY------------SALLQLPGFFCQRKNGLPC 224
+ G Y V +E L +L+V+E + + LL G CQ
Sbjct: 83 AHQ-LGIY-LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG--CQLDLDSSA 138
Query: 225 G-----ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 279
G +R+ V I R L+ +L +DEP L + +++L + G ++F I+
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF-IS 197
Query: 280 QSSTEVFGLFDRICLLSNGNTLFFGET 306
E+ L DRI ++ +G G+T
Sbjct: 198 HKLPEIRQLADRISVMRDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 75/203 (36%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
G + +++++T+ R G ++G +GKSTLL+ +AG
Sbjct: 10 SLAYGDRPLLENVSLTLNPGERI--------------G----LVGRNGAGKSTLLKILAG 51
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL-------------YY 205
L + GEV G++ +E L TV +Y+
Sbjct: 52 ELEPDS---GEVTRPKGLRV------GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102
Query: 206 SALLQLPGFFCQR-----------------------KNGLPC------------GERRRV 230
A L + GL G RRRV
Sbjct: 103 EAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV 162
Query: 231 RIARELVMRPHVLFIDEPLYHLD 253
+AR L+ P +L +DEP HLD
Sbjct: 163 ALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 33/185 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS---------YGF 186
G M I+G + SGKSTLL I + G+V++NG ++ G+
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGQETPPLNSKKASKFRREKLGY 80
Query: 187 VERETTLIGSLTVREYL-----------------YYSALLQLPGFFCQRKN--GLPCGER 227
+ + LI + TV E L AL ++ ++ L GE+
Sbjct: 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQ 140
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
+RV +AR ++ P ++ DEP LD + ++ L +L G T++ I EV
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTII--IVTHDPEVAK 198
Query: 288 LFDRI 292
DR+
Sbjct: 199 QADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 40/196 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G + I+G + SGKSTLL + G P S GEV NG ++++
Sbjct: 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS----GEVLFNGQSLSKLSSNERAKLRNKKL 85
Query: 185 GFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCG 225
GF+ + L+ T E + L+ L R + L G
Sbjct: 86 GFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGG 145
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKLASTGCTLLFTINQSS 282
ER+RV IAR LV +P ++ DEP +LD+ +A + +M+ L + +T F +
Sbjct: 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS----FLVVTHD 201
Query: 283 TEVFGLFDRICLLSNG 298
E+ DR+ + +G
Sbjct: 202 LELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 42/196 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG-----AKSEMPYGSYG 185
PG + I+G + SGKSTL + I R Y G V V+G A G
Sbjct: 27 PGEVVGIVGRSGSGKSTLTKLIQ-------RFYVPENGRVLVDGHDLALADPAWLRRQVG 79
Query: 186 FVERETTLIG------------SLTVREYLYYSALLQLPGFFCQ-----------RKNGL 222
V +E L +++ + + L F + + GL
Sbjct: 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139
Query: 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282
G+R+R+ IAR L+ P +L DE LD S +M + + G T++ ++ S
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLS 198
Query: 283 TEVFGLFDRICLLSNG 298
T DRI ++ G
Sbjct: 199 TVKNA--DRIIVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 23/191 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----------------EM 179
G + I+GP+ +GKSTL++ I RL G + ++G +
Sbjct: 29 GAIYTIVGPSGAGKSTLIKLI-NRLIDPT--EGSILIDGVDIKTIDVIDLRRKIGMVFQQ 85
Query: 180 PYGSYGFVERETTLIGSLTVR---EYLYYSALLQLPGFFCQRK-NGLPCGERRRVRIARE 235
P+ G V+ L + YY +++ L + R L GE +RV IAR
Sbjct: 86 PHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145
Query: 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295
L P VL +DEP LD S ++ + KL + + I + + + D L
Sbjct: 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL 205
Query: 296 SNGNTLFFGET 306
+ G + + +T
Sbjct: 206 NKGILVEYAKT 216
|
Length = 241 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 41/198 (20%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPH 162
+++ K+L G+ V+ + PG + I+GP+ SGK+TLLR I P
Sbjct: 2 SAIEVKNLVKKFHGQT-----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56
Query: 163 SARM-YGEVFVNGAKSEMPYGSY--------GFVERETTLIGSLTV-------------- 199
+ + G++ ++ A+S GFV + L TV
Sbjct: 57 AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE 116
Query: 200 ---------REYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
RE L L + +R +G G+++RV IAR L MRP V+ DEP
Sbjct: 117 PKEEATARARELLAKVGLAGKETSYPRRLSG---GQQQRVAIARALAMRPEVILFDEPTS 173
Query: 251 HLDSVSALLMMVTLKKLA 268
LD ++ T+++LA
Sbjct: 174 ALDPELVGEVLNTIRQLA 191
|
Length = 250 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 59/190 (31%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNG------- 174
+ +K+ N +T ++GP+ GKSTLLR++ L R+ G+V +G
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 175 --------------------AKSEMPYGSYG-----------FVER-ETTLIGSL---TV 199
S +YG E E +L + V
Sbjct: 75 IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV 134
Query: 200 REYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL- 258
++ L+ SAL GL G+++R+ IAR L + P VL +DEP LD ++
Sbjct: 135 KDRLHDSAL------------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGK 182
Query: 259 --LMMVTLKK 266
++ LKK
Sbjct: 183 IEELIQELKK 192
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 38/179 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPY----GSYGFVER 189
PG ++G + SGKST+ + +AG + GE+ +G + E+P S V++
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 190 ETTLIGSLTVREYL--------------------YYSALLQLPGFFCQR-----KNGLPC 224
+ L TVR+ L + + PG + N L
Sbjct: 561 DIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN-LSG 618
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L +DE LD + ++ L++ GCT + ++ ST
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST 674
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 51/202 (25%), Positives = 77/202 (38%), Gaps = 54/202 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++GP+ SGKSTL+ I R Y G + ++G + S G
Sbjct: 27 AGETVALVGPSGSGKSTLVNLI-------PRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNG----------- 221
V ++ L + TV E + Y F + G
Sbjct: 80 LVSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK 138
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LF 276
L G+R+R+ IAR L+ P +L +DE LD+ S L+ L++L T L
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198
Query: 277 TINQSSTEVFGLFDRICLLSNG 298
TI + DRI +L +G
Sbjct: 199 TIENA--------DRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 37/186 (19%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y DK VK+ N GT+ ++GP+ GK+T LRAI L AR+ G + ++G
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 178 EMP-------YGSYGFVERETTLIGSLTV---------------REYLYYSALLQLPG-- 213
P G V ++ +++V R++L A L G
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 214 FFCQRKN-------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVT 263
+ + K+ GL G+++R+ IAR L + P +L +DEP LD S +M
Sbjct: 134 LWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193
Query: 264 LKKLAS 269
LKK+ +
Sbjct: 194 LKKVTT 199
|
Length = 252 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 30/168 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPY--GSYGF 186
PG M + G + +GKSTLL+ I G SA G+++ +G E+P+ G
Sbjct: 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREVPFLRRQIGM 83
Query: 187 VERETTLIGSLTVREYL----------------YYSALLQLPGFFCQRKN---GLPCGER 227
+ ++ L+ TV + + SA L G + KN L GE+
Sbjct: 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQ 143
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
+RV IAR +V +P VL DEP +LD + ++ ++ G T+L
Sbjct: 144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVL 191
|
Length = 222 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 61/248 (24%), Positives = 93/248 (37%), Gaps = 48/248 (19%)
Query: 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGK 118
RV + I A P P AV ++ +DL+ G
Sbjct: 299 RVRAAAERIVEVLDAAGPV---------AEGSAPAAGAVGLG--KPTLELRDLSAGYPG- 346
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
+ V+ + PG I+GP+ SGKSTLL +AG L GEV ++G
Sbjct: 347 ---APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVS 400
Query: 179 MPYGSY-----GFVERETTLIGSLTVREYL-----------YYSAL--LQLPGFFCQRKN 220
++ L + TVRE L ++AL + L + +
Sbjct: 401 SLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEELWAALERVGLADWLRALPD 459
Query: 221 GLPC-----------GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 269
GL GER+R+ +AR L+ +L +DEP HLD+ +A ++ L S
Sbjct: 460 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519
Query: 270 TGCTLLFT 277
+L T
Sbjct: 520 GRTVVLIT 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVN------GAKSEMPYGS 183
PG + I+G + SGK+TLL+ I+GRL A RM + + +
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQ-------RKNGLP 223
+GFV R G + E L +Y + + + R + LP
Sbjct: 91 WGFVHQNPRDGLRMQVSAGG-NIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP 149
Query: 224 C----GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 260
G ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 46/218 (21%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+D + T + + +K N G + I+GP SGKS+LL A+ G L + G
Sbjct: 4 EDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---G 60
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE----------YLY-----YSALL---- 209
V V GS +V +E + + T+RE Y AL
Sbjct: 61 SVSVP--------GSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLE 111
Query: 210 QLP-------GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLM- 260
LP G ++ L G+++R+ +AR + + +D+PL +D+ V +
Sbjct: 112 ILPDGDLTEIG---EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168
Query: 261 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
L L + +L T ++ D+I +L NG
Sbjct: 169 NCILGLLLNNKTRILVT---HQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
RR + + VK + G I+G SGKSTL + +AG + ++ GE+ ++
Sbjct: 22 RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHP-- 76
Query: 179 MPYGSYG---------FVERETTL-----IGSL-------------TVREYLYYSALLQ- 210
+ +G Y F + T+L I + RE L Q
Sbjct: 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV 136
Query: 211 --LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253
LP + L G+++R+ +AR L++RP V+ DE L LD
Sbjct: 137 GLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 43/197 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-------AKSEMPYGSYGFVE 188
G M ++GP+ SGK+TLLR IAG ++ G + +G A+ GFV
Sbjct: 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARDR----KVGFVF 80
Query: 189 RETTLIGSLTV-------------REYLYYSAL----------LQLPGFFCQRKNGLPCG 225
+ L +TV RE +A+ +QL + L G
Sbjct: 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGG 140
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT---INQSS 282
+++RV +AR L + P +L +DEP LD+ + L++L L FT +
Sbjct: 141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE---ELKFTSVFVTHDQ 197
Query: 283 TEVFGLFDRICLLSNGN 299
E + DR+ ++S GN
Sbjct: 198 EEAMEVADRVVVMSQGN 214
|
Length = 353 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 37/162 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----------- 183
PG + I+G + SGKSTLL +AGRL + +GA+ E+ S
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQ-------RKNGLP 223
+GFV R G+ + E L +Y + + + R + LP
Sbjct: 88 WGFVHQNPRDGLRMRVSAGA-NIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLP 146
Query: 224 C----GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 260
G ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 47/144 (32%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKSEMPYGSYGFVERET 191
G I+GP+ +GKSTLL IAG L P S + G+ S P S F +E
Sbjct: 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV-SMLF--QEN 80
Query: 192 TLIGSLTVREYLYYSALLQLPGF---FCQRK---------------NGLPC----GERRR 229
L LTV + + L PG QR+ LP G+R+R
Sbjct: 81 NLFSHLTVAQNI---GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR 137
Query: 230 VRIARELVMRPHVLFIDEPLYHLD 253
V +AR LV +L +DEP LD
Sbjct: 138 VALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 36/203 (17%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS 183
V+K N PG I+GP +GK+TL+ + G++ ++G ++ S
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74
Query: 184 Y----GFVERETTLIGSLTVREYLYYS-------------ALLQLPGFFCQRKNG----- 221
G V ++T L S T+ E + F + NG
Sbjct: 75 LRSMIGVVLQDTFLF-SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVL 133
Query: 222 ------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
L GER+ + IAR ++ P +L +DE ++D+ + L+ L+KL G T +
Sbjct: 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSI 192
Query: 276 FTINQSSTEVFGLFDRICLLSNG 298
++ ST D+I +L +G
Sbjct: 193 IIAHRLSTIKNA--DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----VNGAKSEMPYGSYGFVER 189
G I GP+ GKSTLL+ +A + ++ G + V+ K E + +
Sbjct: 28 AGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQ-----------------LPGFFCQRK-NGLPCGERRRVR 231
L G TV + L + ++ LP + L GE++R+
Sbjct: 85 TPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIA 143
Query: 232 IARELVMRPHVLFIDEPLYHLDSVSA 257
+ R L P +L +DE LD +
Sbjct: 144 LIRNLQFMPKILLLDEITSALDESNK 169
|
Length = 223 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 61/240 (25%), Positives = 92/240 (38%), Gaps = 55/240 (22%)
Query: 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ ++++ T G+ K +K+ N G I+G + SGKSTLL+ +AG
Sbjct: 333 TGQALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTL---IGSLTVREYLYYSALLQ-------- 210
G + +NG + S E L I LT R +L+ L
Sbjct: 390 PQQ---GSITLNG----VEIASL----DEQALRETISVLTQRVHLFSGTLRDNLRLANPD 438
Query: 211 --------------LPGFFCQRKNGLPC-----------GERRRVRIARELVMRPHVLFI 245
L +GL GERRR+ +AR L+ + +
Sbjct: 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498
Query: 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFG 304
DEP LD ++ ++ L + A G TLL T E DRI +L NG + G
Sbjct: 499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLER---MDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 4e-06
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 34/177 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GF 186
G + I G +G++ L A+ G P ++ GE+ ++G + S +
Sbjct: 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDG--KPVTRRSPRDAIRAGIAY 79
Query: 187 V--ER-ETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243
V +R L+ L+V E + + L G G +++V +AR L P VL
Sbjct: 80 VPEDRKREGLVLDLSVAENI--ALSSLLSG-----------GNQQKVVLARWLARDPRVL 126
Query: 244 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST--EVFGLFDRICLLSNG 298
+DEP +D + + +++LA G +L SS E+ GL DRI ++ G
Sbjct: 127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI---SSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 33/152 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G M I+G + SGKSTLL + G P S G+V NG AK+E+
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTS----GDVIFNGQPMSKLSSAAKAELRNQKL 89
Query: 185 GFVERETTLIGSLTVREYLYYSAL----------------LQLPGF---FCQRKNGLPCG 225
GF+ + L+ T E + L L G R + L G
Sbjct: 90 GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGG 149
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257
ER+RV IAR LV P ++ DEP +LD+ +A
Sbjct: 150 ERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 33/144 (22%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP---------YGSYG 185
G + ++G + GKSTLLR +AG +A G++ ++G S +P + SY
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQRPINMMFQSYA 101
Query: 186 F-----VERETTL-----------IGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRR 229
VE+ I S V E L L+ + F ++ + L G+R+R
Sbjct: 102 LFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEML---GLVHMQEFAKRKPHQLSGGQRQR 157
Query: 230 VRIARELVMRPHVLFIDEPLYHLD 253
V +AR L RP +L +DEP+ LD
Sbjct: 158 VALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 58/213 (27%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAK------------------- 176
+T ++GP+ GKST LR+I L SAR GE+ G
Sbjct: 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVF 108
Query: 177 ---SEMPYGSYGFV--------ERETTLIG-----SLT-------VREYLYYSALLQLPG 213
+ P Y + ER +++ SLT V++ L+ SAL
Sbjct: 109 QKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL----- 163
Query: 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 273
L G+++R+ IAR L M+P VL +DEP LD +S + + +L
Sbjct: 164 -------SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSI 216
Query: 274 LLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
++ T N + + DR NG+ + + +T
Sbjct: 217 IIVTHNMQ--QALRVSDRTAFFLNGDLVEYDQT 247
|
Length = 268 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGS-YGFVERE 190
G++ ++GP +GK+TLLRAI G L +A G V V G A S V ++
Sbjct: 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAASRRVASVPQD 85
Query: 191 TTLIGSLTVREYLYY---------------------SALLQ--LPGFFCQRKNGLPCGER 227
T+L VR+ + A+ + + F + L GER
Sbjct: 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGER 145
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
+RV +AR L VL +DEP LD + + +++L G T + I+ ++
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAA 203
Query: 288 LF-DRICLLSNG 298
+ D + LL++G
Sbjct: 204 RYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYG--------SY 184
G V++GP+ +GKS+LLR + L R G + + G S+ P +
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPC 224
G V ++ L LTV+E L + L+L + + L
Sbjct: 85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSG 144
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 273
G+++RV IAR L+M P VL DEP LD ++ +K+LA TG T
Sbjct: 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
|
Length = 242 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 41/239 (17%)
Query: 109 KDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
++L+ T + + RR + + VK + G I+G SGKSTL + +AG + ++
Sbjct: 8 RNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 165 RMYGEVFVNGAKSEMPYGSYG---------FVERETTL-----IGSL------------- 197
GE+ +N + +G Y F + T+L IG +
Sbjct: 68 ---GEILIND--HPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122
Query: 198 TVREYLYYSALLQ---LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD- 253
R + L LP + L G+++RV +AR L++RP ++ DE L LD
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
Query: 254 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
S+ + L+ + L+ G + ++ + Q + + D++ ++ G + G T L
Sbjct: 183 SMRSQLINLMLELQEKQGISYIY-VTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGA-------------K 176
PG +T ++G +GKSTLL+A+AG L P AR+ G+V +NG +
Sbjct: 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLR 85
Query: 177 SEMPYGS---YGFVERETTLI---------GSLTVREYLYYSALLQLPG---FFCQRKNG 221
+ +P + + F RE L+ G+LT R+ L L G +
Sbjct: 86 AVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT 145
Query: 222 LPCGERRRVRIAREL---------VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
L GE RV+ AR L P L +DEP LD ++ T+++LA
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 273 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
+ I DRI +L++G + G
Sbjct: 206 LGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 48/206 (23%), Positives = 79/206 (38%), Gaps = 50/206 (24%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V+++ K ++K N G + IMGP SGKSTL + IAG P G
Sbjct: 4 KDLHVSVEDKE-----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSG 57
Query: 169 EVFVNGAK-SEMP---------YGSYGFVERETTLIGSLTVREYLYYS------------ 206
+ G E+ + ++ + E I ++ E+L +
Sbjct: 58 TILFKGQDLLELEPDERARAGLFLAFQYPEE----IPGVSNLEFLRSALNARRSARGEEP 113
Query: 207 --------------ALLQLPGFFCQR--KNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
ALL + F R G GE++R I + ++ P + +DE
Sbjct: 114 LDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173
Query: 251 HLDSVSALLMMV-TLKKLASTGCTLL 275
LD + AL ++ + +L + L
Sbjct: 174 GLD-IDALKIVAEGINRLREPDRSFL 198
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 119 RRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ Y KVV +P G +T I+GP +GKSTLL ++ L + GE+ ++G
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLEL 65
Query: 175 --AKSEMPYGSYGFVERETTLIGSLTVREYLY-----YS--------------AL--LQL 211
S+ +++E + LTVR+ + YS A+ L L
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL 125
Query: 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-- 269
+ + L G+R+R IA L + +DEPL +LD ++ +M L++LA
Sbjct: 126 EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 270 --TGCTLLFTINQSS 282
T +L IN +S
Sbjct: 186 GKTIVVVLHDINFAS 200
|
Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 34/151 (22%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI---- 194
+MGP+ GKSTLLR L AR+ GEV + G P V RE ++
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 195 ---GSLTVREY----LYYSALLQLPGFFCQR--------------KN-------GLPCGE 226
LT+ + + + L++ +R K+ L G+
Sbjct: 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQ 154
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257
R+R+ IAR L M+P +L +DEP ++D V
Sbjct: 155 RQRLVIARALAMKPKILLMDEPTANIDPVGT 185
|
Length = 253 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 48/180 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI-AGRLPHSARMYGEVFVNGAKSEMPYGS---------- 183
G + GP+ +GKSTLL+++ A LP S R+ V GA ++ S
Sbjct: 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL--VRHEGAWVDLAQASPREVLEVRRK 90
Query: 184 -YGFVE-------RETTL---------------IGSLTVREYLYYSALLQLPGFFCQRKN 220
G+V R + L RE L A L +P +R
Sbjct: 91 TIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELL---ARLNIP----ERLW 143
Query: 221 GLP-----CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
LP GE++RV IAR + +L +DEP LD+ + +++ + + + G L+
Sbjct: 144 HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-05
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 37/165 (22%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSA 164
V + DLT D ++ G G + I+GP GK+T + +AG L P
Sbjct: 341 VEYPDLTKK------LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
Query: 165 RMYGEVFVNGAKSEMPYGSYG--FVERETTLIGSLTVREYL-----------YYSAL--- 208
+ E+ + SY +++ + TV + L Y S +
Sbjct: 395 EVDPELKI----------SYKPQYIKPDY----DGTVEDLLRSITDDLGSSYYKSEIIKP 440
Query: 209 LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253
LQL + L GE +RV IA L + +DEP HLD
Sbjct: 441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALLMMVTLKKLASTGCTLLFTINQSS 282
GERRRV IAR L P + +DEP +D +V + ++ K L G +L T + +
Sbjct: 143 GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII--KHLKDRGIGVLIT-DHNV 199
Query: 283 TEVFGLFDRICLLSNGNTLFFG 304
E + DR ++S+G L G
Sbjct: 200 RETLDICDRAYIISDGKVLAEG 221
|
Length = 243 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G + GKSTL R I G ++ GE+ G ER V
Sbjct: 44 LVGESGCGKSTLGRLILGLEEPTS---GEILFEG----KDITKLSKEERRE------RVL 90
Query: 201 EYLYYSALLQLPGFFCQRK----NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SV 255
E L + LP F R +G G+R+R+ IAR L + P ++ DEP+ LD SV
Sbjct: 91 ELL---EKVGLPEEFLYRYPHELSG---GQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 256 SA--LLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 299
A L ++ L++ G T LF + + S DRI ++ G
Sbjct: 145 QAQILNLLKDLQE--ELGLTYLFISHDLSVVRYIS--DRIAVMYLGK 187
|
Length = 268 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 51/200 (25%), Positives = 78/200 (39%), Gaps = 49/200 (24%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK 176
KR +V+K + A G + I+G + SGKST LR I P + G + VNG +
Sbjct: 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEE 69
Query: 177 SEMPYGSYG------------------FVERETTLIGSLTVREYLYYS------------ 206
+ G V + L +TV E + +
Sbjct: 70 IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEA 129
Query: 207 -----ALLQLPGFFCQRKNGLPC----GERRRVRIARELVMRPHVLFIDEPLYHLDS--V 255
L G ++ + P G+++RV IAR L M P V+ DEP LD V
Sbjct: 130 IERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188
Query: 256 SALLMMVTLKKLASTGCTLL 275
+L ++ + LA G T++
Sbjct: 189 GEVLKVM--QDLAEEGRTMV 206
|
Length = 256 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 38/195 (19%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
Y V + +P G T I+GP GKSTLLR ++ RL A +G V+++G +
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPA--HGHVWLDGEHIQH 73
Query: 180 PYGS------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK-------------- 219
Y S G + + T G +TV+E + P F RK
Sbjct: 74 -YASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132
Query: 220 ---------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
+ L G+R+R IA L ++ +DEP LD + ++ L +L
Sbjct: 133 ITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 271 -GCTL---LFTINQS 281
G TL L +NQ+
Sbjct: 193 KGYTLAAVLHDLNQA 207
|
Length = 265 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 51/217 (23%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKS 177
Y K + + +LP G +T ++GP GKSTLL+ A RL P S G VF+
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQS----GTVFLGDK-- 64
Query: 178 EMPYGSYG---------FVERETTLIGSLTVREYLYY--SALLQLPG------------- 213
P + + +TVRE + Y S L L G
Sbjct: 65 --PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
Query: 214 --------FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMV 262
+R L G+R+R +A L V+ +DEP +LD V + +M
Sbjct: 123 MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182
Query: 263 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
L T T+L +NQ+S D + +L+NG+
Sbjct: 183 ELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 56/211 (26%)
Query: 97 VARKIAGASVVWKDLTVTIK---------GKRRYS-DK-VVKSSNGYAL---PGTMTVIM 142
VA + G S V K+ V + KR S D+ VVK+ + +L G + I+
Sbjct: 257 VAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIV 316
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFV--------------NGAKSEMPYGSYGFVE 188
G + +GK+TL + IAG L ++ GEV V +G Y G +
Sbjct: 317 GTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKPGPDGRGRAKRY--IGILH 371
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRK-----------------------NGLPCG 225
+E L TV + L + L+LP + K + L G
Sbjct: 372 QEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEG 431
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256
ER RV +A+ L+ P ++ +DEP +D ++
Sbjct: 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS--------YGF 186
G + ++G +GKSTL++ + G + GE+ V+G E+ S G
Sbjct: 29 KGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGK--EVRIKSPRDAIRLGIGM 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGF------------FCQRKN----------GLPC 224
V + L+ +LTV E + G +R L
Sbjct: 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSV 143
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284
GE++RV I + L +L +DEP L A + L++LA+ G T++F I E
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF-ITHKLKE 202
Query: 285 VFGLFDRICLLSNG 298
V + DR+ +L G
Sbjct: 203 VMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 36/193 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY---GSYGFVER 189
PG I+G SGKSTLL+ + G + G V ++G P + G+V +
Sbjct: 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPADLRRNIGYVPQ 546
Query: 190 ETTLIGSLTVREYLYYSAL----------LQLPG---FFCQRKNGL--PCGERRR----- 229
+ L T+R+ + A +L G F + +GL GER R
Sbjct: 547 DPRLF-YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605
Query: 230 ----VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285
V +AR L+ P +L +DEP +D+ S LK+ + G TL+ +++S +
Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--L 662
Query: 286 FGLFDRICLLSNG 298
L DRI ++ NG
Sbjct: 663 LDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 136 GTMTVIMGPAKSGKSTLL-------RAIAGRLP---------HSARMYGEVFVNGAKSEM 179
G + ++G +GK+TLL RA +GR+ +A++ E A + +
Sbjct: 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE-----AVAIV 85
Query: 180 PYGSYGF----VERETTLIGSLTVREYLYYSALLQLPGFF-------CQRKNGLPCGERR 228
P G F VE E +G + + + F QR + GE++
Sbjct: 86 PEGRRVFSRMTVE-ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ 144
Query: 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288
+ I R L+ +P +L +DEP L + + T+++L G T +F + Q++ + L
Sbjct: 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT-IFLVEQNANQALKL 203
Query: 289 FDRICLLSNG 298
DR +L NG
Sbjct: 204 ADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 30/183 (16%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G +GKSTLLR +AG P + G V V G S + GF LT R
Sbjct: 53 LIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLLGLGGGFN-------PELTGR 102
Query: 201 EYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241
E +Y + L +L F G + R+ A + P
Sbjct: 103 ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPD 162
Query: 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301
+L IDE L D+ L++L G T++ ++ + + L DR +L G
Sbjct: 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL-VSHDPSSIKRLCDRALVLEKGKIR 221
Query: 302 FFG 304
F G
Sbjct: 222 FDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
L G+R+R+ +AR L P ++ +DEP +LD + +K L + G T++ ++
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313
S + G D+I +L +G FGE L
Sbjct: 514 PS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK------ 176
VK+ +G L PG + G +GKSTL++ ++G PH GE++ +G+
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNI 72
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---------CQR--------- 218
+ + +E TL+ L+V E ++ + LPG +
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 219 -KNGLPCGE-----RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
P G+ ++ V IA+ L + +L +DEP L +++ ++ L + G
Sbjct: 133 DNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 273 TLLFTINQSSTEVFGLFDRICLLSNG 298
++ I+ EV + D IC++ +G
Sbjct: 193 ACVY-ISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 50/201 (24%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + V ++ + I G + VI+GP+ SGKSTLLR I
Sbjct: 12 GPTQVLHNIDLNID------------------QGEVVVIIGPSGSGKSTLLRCINKLEEI 53
Query: 163 SARMYGEVFVNGAKSEMPYGSY-------GFVERETTLIGSLTVREYLYY---------- 205
++ G++ V+G K P G V ++ L LT E + +
Sbjct: 54 TS---GDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASK 110
Query: 206 -------SALLQLPGFFCQRKNGLPC----GERRRVRIARELVMRPHVLFIDEPLYHLDS 254
LL G +R + P G+++RV IAR L ++P ++ DEP LD
Sbjct: 111 EEAEKQARELLAKVG-LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
Query: 255 VSALLMMVTLKKLASTGCTLL 275
++ ++ LA G T++
Sbjct: 170 ELRHEVLKVMQDLAEEGMTMV 190
|
Length = 240 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 205 YSALLQLPGFFCQRKN-GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 263
Y L+ L + QR L G++RRV +A L M P L DEP LD ++
Sbjct: 148 YIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI 207
Query: 264 LKKLASTGCTLL 275
L G T++
Sbjct: 208 FDNLNKQGKTII 219
|
Length = 305 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 53/228 (23%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRA---IAGRLPHSARMYGEVFVNGA- 175
Y +K VK+ +T I+GP+ GK+TLLR+ + +P R+ G+++ G
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP-GFRVEGKIYFKGQD 71
Query: 176 -------------------KSEMPYG-------SYGF----VERETTLIGSLTVREYLYY 205
+ P+ ++G V+ + L V E L
Sbjct: 72 IYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKL--DRIVEESLKK 129
Query: 206 SAL-------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
+AL L PG L G+++R+ IAR L + P V+ +DEP LD ++
Sbjct: 130 AALWDEVKSELNKPGT------RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
+ L++L+ ++ T N + + D I + G + +G T
Sbjct: 184 RIEKLLEELSENYTIVIVTHNIG--QAIRIADYIAFMYRGELIEYGPT 229
|
Length = 250 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
Y V+K+ + G + + G SGKS+LL I G L S G++ +G S P
Sbjct: 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSGRISFSP 493
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
S+ G + ++ + G L+ EY Y S + QL F ++ L
Sbjct: 494 QTSWIMPGTI-KDNIIFG-LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSG 551
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMVTLKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P HLD V+ + L KL S +L T S
Sbjct: 552 GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVT---SKL 608
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I LL G F+G T + LQ
Sbjct: 609 EHLKKADKILLLHEGVCYFYG-TFSELQ 635
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174
G + VI+GP+ SGKSTLLR + G + G + V+G
Sbjct: 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDG 63
|
Length = 240 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-05
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 53/209 (25%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYAL---------PGTMTVIMGPAKSGKSTLLRAIAGRL 160
+ VTI+ + D + S +G L G ++GP+ +GK++LL A+ G L
Sbjct: 345 NDPVTIEAE----DLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400
Query: 161 PHSARMYGEVFVNGAK-------------------SEMPYGSYGFVERETTLIGSLTVRE 201
P+ G + +NG + ++P+G+ R+ L+G+ +
Sbjct: 401 PYQ----GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL----RDNVLLGNPDASD 452
Query: 202 YLYYSALLQ--LPGFFCQRKNGL--PCGER---------RRVRIARELVMRPHVLFIDEP 248
AL + F GL P G++ +R+ +AR L+ +L +DEP
Sbjct: 453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEP 512
Query: 249 LYHLDSVSALLMMVTLKKLASTGCTLLFT 277
LD+ S L+M L + TL+ T
Sbjct: 513 TASLDAHSEQLVMQALNAASRRQTTLMVT 541
|
Length = 588 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 33/168 (19%)
Query: 124 KVVKSSNGYAL---PGTMT-----VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
+ K+ + L G+++ I+GP GK+T ++ +AG L
Sbjct: 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD----------EG 54
Query: 176 KSEMPYGSYGFVERETTLIGSLTVREYL-----------YYSA----LLQLPGFFCQRKN 220
E+ + + + TVR+ L Y+ LQ+ +
Sbjct: 55 DIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP 114
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
L GE +RV IA L + +DEP +LD L+ +++ A
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGF--VERETTL 193
G++ I+G GK++L+ A+ G L H+ V + G+ + +P S+ F RE L
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAET--SSVVIRGSVAYVPQVSWIFNATVRENIL 700
Query: 194 IGSLTVREYLYYSAL----LQ-----LPGF----FCQRKNGLPCGERRRVRIARELVMRP 240
GS E Y+ A+ LQ LPG +R + G+++RV +AR +
Sbjct: 701 FGSDFESER-YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
+ D+PL LD+ A + + K G T + NQ L DRI L+S G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 208 LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
L+ F Q L G+++RV IA LV++ L +DEP LD M+ ++++
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 268 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF---GETLACLQHFSNAGFPCP 321
+ G ++ + + ++ + D + +L G L GE AC + AG P
Sbjct: 183 VAQGNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 45/201 (22%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP------YGSYGFVERETTL 193
++GP +GKSTLL +AG LP S G + G + +Y +++T
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARHRAY-LSQQQTPP 81
Query: 194 IGSLTVREYL------------------YYSALLQLPGFFCQRKNGLPCGERRRVRIARE 235
++ V +YL + L L + N L GE +RVR+A
Sbjct: 82 F-AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAV 140
Query: 236 L-----VMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT---INQSSTEV 285
+ + P +L +DEP+ LD + L +L G ++ + +N +
Sbjct: 141 VLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA 200
Query: 286 FGLFDRICLLSNGNTLFFGET 306
DR+ LL G L G
Sbjct: 201 ----DRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAK------------------- 176
+T I+GP+ GKSTLLRA+ + AR+ G V ++
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 177 ---SEMPYGSYGFVERETTLIGSLT-------VREYLYYSALL-QLPGFFCQRKNGLPCG 225
+ P + V ++G+ V + L +AL ++ + L G
Sbjct: 92 QQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
+++R+ IAR L + P V+ +DEP LD VS + + +++L
Sbjct: 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
|
Length = 251 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 56/210 (26%), Positives = 79/210 (37%), Gaps = 48/210 (22%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY- 167
++LTV V+ + PG + I+G + SGKSTL A+ G LP R+
Sbjct: 9 ENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 168 GEVFVNGA------KSEM--------------PYGSY------GFVERETTLIGSLTVRE 201
GEV ++G + EM P S G RE + R
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA 127
Query: 202 YLYYSALLQLPGFFCQRKNGLP-------------CGERRRVRIARELVMRPHVLFIDEP 248
A+ L + GLP G R+RV IA L ++P +L DEP
Sbjct: 128 EARKRAVELL------EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181
Query: 249 LYHLDSVSALLMMVTLKKLAS-TGCTLLFT 277
LD + ++ LK L G +LF
Sbjct: 182 TTALDVTTQAQILDLLKDLQRELGMAVLFI 211
|
Length = 539 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALLMMVTLKKLASTGCTLL 275
G+++RV IAR L M P V+ DEP LD V +L +K LA G T++
Sbjct: 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAEEGMTMI 190
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 59/179 (32%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA---KSEM---------- 179
+T ++GP+ GKST LR + L S ++ GEV ++G KS++
Sbjct: 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVG 87
Query: 180 -----------------PYG--SYGFVER-------ETTLIGSL---TVREYLYYSALLQ 210
YG ++G ++ E +L G+ V++ L SAL
Sbjct: 88 MVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL-- 145
Query: 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 266
GL G+++R+ IAR L + P VL +DEP LD +S L ++ LKK
Sbjct: 146 ----------GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 39/167 (23%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSA 164
V + DL T Y D ++ G G + I+GP GK+T ++ +AG + P
Sbjct: 343 VEYPDLKKT------YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--- 393
Query: 165 RMYGEVFVNGAKSEMPYGSYG--FVERETTLIGSLTVREYL------------YYSAL-- 208
G++ ++ SY ++ + TV + L + + +
Sbjct: 394 -------DEGSEEDLKV-SYKPQYISPDYDG----TVEDLLRSAIRSAFGSSYFKTEIVK 441
Query: 209 -LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
L L + + L GE +RV IA L + +DEP +LD
Sbjct: 442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 40/204 (19%)
Query: 138 MTVIMGPAKSGKSTLLRA------------IAGRLP------HSARM--------YGEVF 171
+T ++GP+ GKST LR I G + + ++M G VF
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVF 91
Query: 172 VNGAKSEMPYGSYGFVERETTLIG-------SLTVREYLYYSALLQLPGFFCQRK-NGLP 223
+ P+ Y V + G V E L +A+ + R
Sbjct: 92 QQ--PTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFS 149
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSS 282
G+++R+ IAR L +RP V+ +DEP LD +S+ + TL +L ++ T N Q +
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQA 209
Query: 283 TEVFGLFDRICLLSNGNTLFFGET 306
+ D+ L NG+ + G T
Sbjct: 210 GRI---SDQTAFLMNGDLIEAGPT 230
|
Length = 251 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
L G+R+R+ +AR L P ++ +DEP +LDS + + + G T++ ++
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAG 317
S D+I +L +G FG L
Sbjct: 532 PS--ALASVDKILVLQDGRIAAFGPREEVLAKVLRPP 566
|
Length = 580 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYG-EVFVNGAKSE 178
VK+ +G AL PG + ++G +GKST+++ + G A G EV NG KS
Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76
Query: 179 MPYGSYGFVERETTLIGSLTV-------REY-----------LYYSA--LLQLPG--FFC 216
G G + +E LI LT+ RE+ +Y A LL F
Sbjct: 77 QEAG-IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS 135
Query: 217 QRKNG-LPCGERRRVRIARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTL 274
+ G L GE++ V IA+ L V+ +DEP L D+ + L V +++L S G +
Sbjct: 136 DKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-IRELKSQGRGI 194
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305
++ I+ E+F + D + + +G F E
Sbjct: 195 VY-ISHRLKEIFEICDDVTVFRDGQ--FIAE 222
|
Length = 501 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 34/222 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + G + + + + N A + ++GP +GKSTL R G L ++ G
Sbjct: 7 RDLCYSYSGSK----EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---G 59
Query: 169 EVFVNGAK--SEMPYGSYGFV----ERETTLIGSLTVREYLYY----------------S 206
V + G E FV + I S TV + + + S
Sbjct: 60 SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVS 119
Query: 207 ALLQLPGFFCQRK---NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 263
+ L + G R + L GE++RV IA + M P VL +DEP LD ++
Sbjct: 120 SALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 264 LKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
L L T G T++F+ +Q V + D I ++ G + +G
Sbjct: 180 LNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCT 273
G+++RV IAR L+M P VL DEP LD ++A ++ + +++LA TG T
Sbjct: 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAETGIT 193
|
Length = 242 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 68/269 (25%), Positives = 108/269 (40%), Gaps = 63/269 (23%)
Query: 89 PPLPEGAAVARKIAGASVVWKDLTVTIKGK----RRYSD--KVVKSSNGYALPGTMTVIM 142
PPLPE A V ++ +DL V K RR D + V + G ++
Sbjct: 267 PPLPEDAPVLLEV-------EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMY--GEVFVNGAKSEM-------------PYGSY--- 184
G + SGKSTL A+ +P + G+ ++ EM PYGS
Sbjct: 320 GESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379
Query: 185 ---GFVERETTLIGSLTV----REYLYYSALLQLPGFFCQRKNGLP------------CG 225
G + E + + R+ AL + GL G
Sbjct: 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEAL---------EEVGLDPATRNRYPHEFSGG 430
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKL-ASTGCTLLFTINQSST 283
+R+R+ IAR L+++P ++ +DEP LD SV A ++ + L+ L G + LF I+
Sbjct: 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQKHGLSYLF-ISHDLA 488
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQH 312
V L R+ ++ +G + G T A +
Sbjct: 489 VVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSST 283
G+++RV +AR L+ RP +L +DEPL LD+++ + M ++ L G T+L + S
Sbjct: 137 GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS- 195
Query: 284 EVFGLFDRICLLSNGN 299
E + DR+ L+ G
Sbjct: 196 EAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L G+ RRV IA L M P VL +DEP LD + + MM + + +G T++ +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL-VTHL 203
Query: 282 STEVFGLFDRICLLSNGNTLFFG 304
+V D + LL G+ + G
Sbjct: 204 MDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 5e-04
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 35/145 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPY-GSY 184
G + I GP +GK++LLR +AG A GEV G ++ Y G
Sbjct: 26 AGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYHQDLLYLGHQ 82
Query: 185 GFVERETTLIGSLTVREYL-YYSALLQLPG----FFCQRKNGL------PC-----GERR 228
++ E LT E L +Y L + + GL P G++R
Sbjct: 83 PGIKTE------LTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQR 136
Query: 229 RVRIARELVMRPHVLFIDEPLYHLD 253
RV +AR + R + +DEP +D
Sbjct: 137 RVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
Q L G+++R+ IAR L ++P +L +DEP LD +S+ ++ LK+L+ ++
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMV 197
Query: 277 TINQSSTEVFGLFDRICLLSNGNTLFFGET 306
T N + D G + FGE+
Sbjct: 198 THNMQQGKRVA--DYTAFFHLGELIEFGES 225
|
Length = 246 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 30/146 (20%)
Query: 142 MGPAKSGKSTLLRA------------IAGRLPHSARMYGEVFVNGAK------------S 177
+GP+ GKSTLLR + GRL + R + +N K +
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111
Query: 178 EMP---YGSYGFVERETTLIGSLT--VREYLYYSALL-QLPGFFCQRKNGLPCGERRRVR 231
P Y + F R G+L V + L +A+ ++ ++ L G+++R+
Sbjct: 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171
Query: 232 IARELVMRPHVLFIDEPLYHLDSVSA 257
IAR + M+P VL +DEP LD +S
Sbjct: 172 IARAIAMKPDVLLMDEPCSALDPIST 197
|
Length = 274 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 258
GERRRV + R L+ +P +L +DEP HLD SV+ L
Sbjct: 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWL 200
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
L G+++RV IAR L M P VL DEP LD ++ +++LA G T++
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
|
Length = 257 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 42/196 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA-----KSEMPYGSYG 185
G I+G + +GKST+LR + R Y G + ++G + + G
Sbjct: 288 LGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 186 FVERETTLIGS------------LTVREYLYYSALLQLPGFFCQRKNG-----------L 222
V ++T L T E + Q+ F G L
Sbjct: 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400
Query: 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282
GE++RV IAR ++ P +L +DE LD+ + + L+++++ G T L ++ S
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLS 459
Query: 283 TEVFGLFDRICLLSNG 298
T + D I +L NG
Sbjct: 460 TIIDA--DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284
GE++RV IAR ++ P +L +DE LD+ + + L+ + S G T + ++ ST
Sbjct: 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGRTTIVIAHRLSTI 199
Query: 285 VFGLFDRICLLSNG 298
V D+I +L +G
Sbjct: 200 VNA--DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 69/260 (26%)
Query: 81 LNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR-RY---SDKVVKSSNGYALPG 136
LNS P+ P G A ++ GA +T + R RY S +V+ + N PG
Sbjct: 435 LNS---PTEPRSAGLAALPELRGA--------ITFENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA----------KSEMPYG 182
I+GP+ SGKSTL + + R+Y G+V V+G + +M
Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQ-------RLYTPQHGQVLVDGVDLAIADPAWLRRQM--- 533
Query: 183 SYGFVERETTLIGSLTVR------------EYLYYSALL--------QLP-GFFCQ---R 218
G V +E L S ++R E++ ++A L +LP G+ + +
Sbjct: 534 --GVVLQENVLF-SRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278
L G+R+R+ IAR LV P +L DE LD S L+M ++++ G T++
Sbjct: 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIA 649
Query: 279 NQSSTEVFGLFDRICLLSNG 298
++ ST V DRI +L G
Sbjct: 650 HRLST-VRAC-DRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 31/139 (22%)
Query: 141 IMGPAKSGKSTLLRAIAGRLP-------HSARMYGEVF----VNG---AKSEMPYGSYGF 186
++GP GKST+L+ I+G L SA++ VF V+G + + + Y F
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCF 599
Query: 187 V----ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242
++ +GS V L + L G G++ RV A+ +PH+
Sbjct: 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-----------GQKSRVAFAKITFKKPHI 648
Query: 243 LFIDEPLYH--LDSVSALL 259
L +DEP H LD+V AL+
Sbjct: 649 LLLDEPSNHLDLDAVEALI 667
|
Length = 718 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 266
L G+++R+ IAR + ++P V+ +DEP LD +S L +MV LKK
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK 195
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGE--VFVNGAKS--EMPYGSYGFVERETTLIGSLT 198
+ + + + IA L + +YG+ V N ++ E+ Y V R LI +
Sbjct: 98 NLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157
Query: 199 VREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
+ + + A L GE++RV +AR+L P + DEP LD +A
Sbjct: 158 LSHRITHIA------------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAK 205
Query: 259 LMMVTLKKLA-STGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACLQHF 313
L+ L++ ++G +++ T EV L D+ L NG G + F
Sbjct: 206 LVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 45/179 (25%), Positives = 70/179 (39%), Gaps = 51/179 (28%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA--RMYGEVFV---NGAKSEMPYGSYGFV 187
G M I+G + SGKSTL+ I G L P S R+ G+ A +++ +GF+
Sbjct: 33 AGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFI 91
Query: 188 -------------------------------ERETTLIGSLTVREYLYYSALLQLPGFFC 216
R L+ L + + + Y
Sbjct: 92 FQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY----------- 140
Query: 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
+ + L G+++RV IAR L+ V+ DEP LDS S +M L +L G T++
Sbjct: 141 -QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI 198
|
Length = 648 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNG 174
+V+ N T+T +MGP+ SGKSTLLR L AR+ GEV+++G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 29/143 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMPYGSY----GFVE 188
G +I GP+ GKSTLL+ +A + P S G + G S + Y +
Sbjct: 32 AGEFKLITGPSGCGKSTLLKIVASLISPTS----GTLLFEGEDISTLKPEIYRQQVSYCA 87
Query: 189 RETTLIGSLTVREYLYYS-----------------ALLQLPGFFCQRK-NGLPCGERRRV 230
+ TL G TV + L + LP + L GE++R+
Sbjct: 88 QTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRI 146
Query: 231 RIARELVMRPHVLFIDEPLYHLD 253
+ R L P VL +DE LD
Sbjct: 147 SLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.001
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 258
GERRRV + R L+ +P +L +DEP HLD SV+ L
Sbjct: 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWL 202
|
Length = 556 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
GL G++RRV IA L ++P +L DEP LD MM + + T +F I
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKT-VFVITH 234
Query: 281 SSTEVFGLFDRICLLSNGNTLFFG 304
+ V + D + ++ G L G
Sbjct: 235 TMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L ++ +++K N G + IMGP SGKSTL + IAG P + G
Sbjct: 11 KNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEG 64
Query: 169 EVFVNG 174
++ G
Sbjct: 65 DILFKG 70
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
L G+ RRV IA L M P +L +DEP LD +M KKL +G T++
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
|
Length = 280 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLF 276
L G++R I R LV P +L +DEPL LD ++ L+ + L S G T LLF
Sbjct: 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457
|
Length = 490 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L G+++RV IA L M P V+ +DEP+ +LD +M L +L + G T++
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV----- 193
Query: 282 STEVFGLF----DRICLLSNGNTLFFG--ETLACLQHFSNAGFPCPIM 323
+T L D++ +L G L G L AG P++
Sbjct: 194 ATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLPLV 241
|
Length = 274 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 59/171 (34%)
Query: 136 GTMTVIMGPAKSGKSTLLR-------------AIAGR----LPHSARMYGEVFVNGAKSE 178
G V++GP+ GKSTLLR I GR L + R VF N A
Sbjct: 30 GEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYA--- 86
Query: 179 MPYGSYGFVERETTLIGSLTVREYLYYS-------------------ALLQLPGFFCQRK 219
L ++VRE + Y +L+L ++
Sbjct: 87 --------------LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP 132
Query: 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL 267
L G+R+RV + R +V P V DEPL +LD A L M + +++L
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD---AKLRVQMRLEIQRL 180
|
Length = 356 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 47/165 (28%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS----ARMYGEVFVNGAKSEMPYGS------ 183
P ++T +GP+ GKST+LR + R+ H AR+ GEV ++G E YG
Sbjct: 28 EPRSVTAFIGPSGCGKSTVLRTL-NRM-HEVIPGARVEGEVLLDG---EDLYGPGVDPVA 82
Query: 184 ----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK-------------------- 219
G V + ++++R+ + A L+L G ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140
Query: 220 ------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
GL G+++R+ IAR + + P VL +DEP LD +S L
Sbjct: 141 RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 31/192 (16%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS-----YGFVERETTLIG 195
++GP +GKSTLL +AG S G + G E + ++ ++ T
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATELARHRAYLSQQQTPPF 85
Query: 196 SLTVREYL--------------YYSALLQLPGFFCQRKNGLPCGERRRVRIAREL----- 236
++ V YL + L L + N L GE +RVR+A +
Sbjct: 86 AMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145
Query: 237 VMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 294
P +L +DEP+ LD + L L G ++ + + R L
Sbjct: 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS-SHDLNHTLRHAHRAWL 204
Query: 295 LSNGNTLFFGET 306
L G L G
Sbjct: 205 LKRGKLLASGRR 216
|
Length = 248 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 58/215 (26%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAK----------------- 176
+T ++GP+ GKST LR + L + G V + G
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 177 -----SEMPYGSYGFV-----------------ERETTLIGSLT---VREYLYYSALLQL 211
+ P+ Y V ET+L + V+++L+ SAL
Sbjct: 91 VFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL--- 147
Query: 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 271
L G+++RV IAR L ++P V+ +DEP LD +S+ + L +L
Sbjct: 148 ---------SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 272 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
+L T + D+ GN + F +T
Sbjct: 199 TIILVTHSMHQASRIS--DKTAFFLTGNLIEFADT 231
|
Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQ 280
L G+++RV IAR L MRP V+ DE LD ++ +++LAS T+L ++
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206
Query: 281 SSTEVFG--LFDRICLLSNG 298
F DR+C G
Sbjct: 207 MG---FAREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLAST-GCTLLFTINQSS 282
GER+RV IA L+ RP +L DEP LD SV A ++ + L++L LLF I +
Sbjct: 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLF-ITHNL 217
Query: 283 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFP 319
+ V L DR+ ++ NG + E FS P
Sbjct: 218 SIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251
|
Length = 529 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174
G +T IMGP+ GK+TLLR I G++ GE+ +G
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDG 68
|
Length = 269 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ N PG + IMGP SGKSTL +AGR
Sbjct: 5 KDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 56/166 (33%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNG----AKSEM--------- 179
++ +GP+ GKST LR L + R+ GE+ ++G K
Sbjct: 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVG 87
Query: 180 -------PYG-------SYG----------FVER--ETTLIGSL---TVREYLYYSALLQ 210
P+ +YG F+ + E TL G+ V++ L SA
Sbjct: 88 MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAF-- 145
Query: 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256
L G+++R+ IAR + + P VL +DEP LD +S
Sbjct: 146 ----------ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
|
Length = 250 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 20/174 (11%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTV 199
++GP +GKSTLL+ I G L ++ GE+ +G + G + L +LT
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTA 87
Query: 200 REYLYYSALL---------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244
RE L L L ++ G ++R+ IA L+ P +L
Sbjct: 88 RENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147
Query: 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
+DEP LD + + ++ G T++ + + S EV L D I ++S G
Sbjct: 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEG 200
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 35/196 (17%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA------ 175
++K+ N ++T ++GP+ GKST +R + L R G ++++G
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 176 ---------------------KSEMPYGSYGFV---ERETTLIGSLTVREYLYYSALL-Q 210
KS +YG E + I V E L +AL +
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER-VEESLKAAALWDE 135
Query: 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
+ + GL G+++R+ IAR + + P V+ +DEP LD +S + + KL
Sbjct: 136 VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED 195
Query: 271 GCTLLFTIN-QSSTEV 285
++ T N Q +T V
Sbjct: 196 YTIVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 57/182 (31%)
Query: 120 RYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA- 175
Y D +T ++GP+ GKST LR + L AR+ GE+ ++G
Sbjct: 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74
Query: 176 --------------------------KSEMPYGSYGF-----------VER-ETTLIGSL 197
KS +YG ER E +L +
Sbjct: 75 IYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA 134
Query: 198 ---TVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
V++ L+ SAL GL G+++R+ IAR L + P VL +DEP LD
Sbjct: 135 LWDEVKDRLHESAL------------GLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 255 VS 256
++
Sbjct: 183 IA 184
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 50/171 (29%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNG---------AKSEMPYG---- 182
+T ++GP+ GKSTLLR + L ++ G++ ++G A + G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ 90
Query: 183 -------------SYGF----VERETTLIGSLTVREYLYYSAL-------LQLPGFFCQR 218
+YG ++ + L V L +AL L+ F
Sbjct: 91 KPNPFPMSIYENVAYGLRAQGIKDKKVL--DEVVERSLRGAALWDEVKDRLKSHAF---- 144
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 266
GL G+++R+ IAR + M P V+ +DEP LD ++ +M LKK
Sbjct: 145 --GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
|
Length = 249 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNG 174
Y DK +K N +T ++GP+ GKSTLLR + R L AR+ GEV ++G
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG 73
|
Length = 253 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---LMMVTLKK 266
GL G+++R+ IAR L ++P VL +DEP LD +S L ++ LKK
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 266
L G+++R+ IAR L P VL +DEP LD VS +++ LK+
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
|
Length = 259 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 28/147 (19%), Positives = 42/147 (28%), Gaps = 33/147 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G++T+I GP SGKST+L AI G G
Sbjct: 20 EGSLTIITGPNGSGKSTILDAIG-------------LALGGAQSATRRRSGVKAGCIV-- 64
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL----VMRPHVLFIDEPLY 250
LQL G GE+ +A L + + +DE
Sbjct: 65 ---AAVSAELIFTRLQLSG-----------GEKELSALALILALASLKPRPLYILDEIDR 110
Query: 251 HLDSVSALLMMVTLKKLASTGCTLLFT 277
LD + + + G ++
Sbjct: 111 GLDPRDGQALAEAILEHLVKGAQVIVI 137
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 43/177 (24%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMP------------- 180
G +T ++GP+ GKST+LR++ L + G V +G P
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 181 ------------YGSYGFVERETTLIGSLT--VREYLYYSALLQLPGFFCQRK-----NG 221
Y + F R G + V L +A+ C+ K
Sbjct: 99 VFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE----CKDKLNESGYS 154
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278
L G+++R+ IAR + + P V+ +DEP LD +S L + T+ +L FTI
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-----FTI 206
|
Length = 269 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 56/187 (29%)
Query: 139 TVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA--------------------- 175
T ++GP+ GKSTLLR L R+ G++ NG
Sbjct: 35 TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQ 94
Query: 176 ------KS---EMPYGS--YGFVER-------ETTLIGSL---TVREYLYYSALLQLPGF 214
KS + YG +G + E +L G+ V++ L+ SAL
Sbjct: 95 RPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL------ 148
Query: 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
L G+++R+ IAR L + P V+ +DEP LD ++ + ++ L +
Sbjct: 149 ------SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVI 202
Query: 275 LFTINQS 281
+ T N
Sbjct: 203 IVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSAL---LMM 261
G+R+R+ IAR L++ P V+ DEP+ LD SV A LMM
Sbjct: 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
|
Length = 327 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN- 279
GL G+++R+ IAR L ++P VL +DEP LD ++ + + + L S + T N
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
Query: 280 QSSTEV 285
Q +T V
Sbjct: 210 QQATRV 215
|
Length = 259 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
V+K+ N G M I G SGK++LL I G L S G++ +G S
Sbjct: 48 VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSGRISFSS 104
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
S+ G + +E + G ++ EY Y S + QL F ++ N L
Sbjct: 105 QFSWIMPGTI-KENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD + + + + KL + +L T S
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT---SKM 219
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I +L G++ F+G T + LQ
Sbjct: 220 EHLKKADKILILHEGSSYFYG-TFSELQ 246
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 58/196 (29%)
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GFV--ERETT-LIG 195
+G++ L RA+ G P S+ GE+ ++G + S +V +R++ L+
Sbjct: 296 AGRTELARALFGARPASS---GEILLDG--KPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350
Query: 196 SLTVREYLYYSALLQL-PGFFCQRKNGLPCGERRRVR----------------------- 231
+++ E + ++L + R+ ER
Sbjct: 351 DMSIAENITLASLRRFSRRGLIDRRK-----ERALAERYIRRLRIKTPSPEQPIGTLSGG 405
Query: 232 ------IARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLASTGCTLLFTINQSST- 283
+AR L P VL +DEP +D V A + +++LA+ G +L SS
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMI---SSEL 461
Query: 284 -EVFGLFDRICLLSNG 298
E+ GL DRI ++ G
Sbjct: 462 PELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLP-----------HSARMYGEVFVNGAKSEMPYGSYGFVE 188
+G SGKS L RA+AG LP H R+ E E +
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE-------WQR 85
Query: 189 RETTLIG------SLTVREY-----------LYYSALLQLPGFFCQRKNGLPCGERRRVR 231
T ++ T E + + +R L GE R+
Sbjct: 86 NNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145
Query: 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 279
+ + L+ P +L +DEP LD S + L L +G TL+ +N
Sbjct: 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLN 193
|
Length = 490 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD 253
G++RRV IA + M P +L +DEP LD
Sbjct: 148 GQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
Length = 287 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
GL G+++R+ IAR L + P V+ +DEP LD +S L
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
|
Length = 271 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG----SYGFVERETTL 193
+T +G +GK+T L + G LP ++ G V V G E S G + L
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 194 IGSLTVREY-LYYS---------------ALLQLPGFFCQRK---NGLPCGERRRVRIAR 234
LTV E+ L+Y+ A+L+ G +R L G +R++ +A
Sbjct: 1015 FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074
Query: 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 294
V V+ +DEP +D S + L K S ++ T + ++ G DRI +
Sbjct: 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAI 1132
Query: 295 LSNG 298
+S G
Sbjct: 1133 ISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
G+++R+ IAR + ++P +L +DEP LD +S + + T+ +L
Sbjct: 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209
|
Length = 267 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 260
G ++R++IAR LV P ++F+DEP LD SV A L+
Sbjct: 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 53/156 (33%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYGSYGFVERETT 192
PG + V++GP +GK+TL+ I G+ GEV +G +++P E
Sbjct: 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLP-------EHRIA 79
Query: 193 LIG------------SLTVREYLYYSALLQLPGFF---CQRKNG---------------- 221
G +LTVRE L AL + F R
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLEL-ALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 222 ---------LPCGERRRVRIARELVMRPHVLFIDEP 248
L G+++ + I L P +L +DEP
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
|
Length = 249 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 697 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.98 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.98 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.98 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.98 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.98 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.91 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.9 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.9 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.89 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.88 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.88 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.88 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.87 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.87 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.86 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.85 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.85 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.84 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.82 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.81 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.81 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.79 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.77 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.77 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.76 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.75 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.74 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.74 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.74 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.73 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.72 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.71 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.7 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.65 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.64 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.64 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.63 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.62 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.61 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.59 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.53 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.49 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.48 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.41 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.38 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.36 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.31 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.3 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.3 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.26 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.25 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.25 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.24 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.24 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.23 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.23 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.23 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.23 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.22 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.22 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.21 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.2 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.18 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.18 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.16 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.15 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.15 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.15 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.1 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.1 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.09 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.02 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.02 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.01 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.98 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.98 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.94 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.89 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.89 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.8 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.77 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.77 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.76 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.74 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.73 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.7 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.68 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.67 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.62 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.58 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.56 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.55 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.41 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.32 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.32 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.32 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.3 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.28 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.26 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.25 | |
| PRK13764 | 602 | ATPase; Provisional | 98.23 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.22 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.18 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.13 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.11 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.08 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.08 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.07 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.06 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 98.05 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.04 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.02 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.0 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 98.0 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 97.99 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.98 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.97 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.95 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 97.95 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.91 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.89 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.88 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-101 Score=889.25 Aligned_cols=553 Identities=32% Similarity=0.532 Sum_probs=479.3
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~ 180 (697)
+..+.|+|++++.+.+....+++|+||||+++|||++||||||||||||||++|+|+.+.+...+|+|.+||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 4579999999998755334688999999999999999999999999999999999999876568899999996543 34
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccccc---------------------------CCCCCHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR---------------------------KNGLPCGERRRVRIA 233 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~---------------------------~~~LSGGqrqRv~IA 233 (697)
++.+|||.|+|.+++++||+|+|.|++.+++|...++. .+++||||||||+||
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 56799999999999999999999999999998642211 168999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
.+|++||.||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff 262 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFF 262 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCchHHHHHHhccc--hhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHh-cCHHHHHHHHHHHHhh
Q 005423 314 SNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQ-SSADAAAVETMILRLT 390 (697)
Q Consensus 314 ~~~g~~~p~~~~pad~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~~~~~~~~~~~~~~ 390 (697)
+++|+|||+..||+||++++++.+ .+.. ....+.....+.++ .....+..........
T Consensus 263 ~~~G~~~P~~~Npadf~l~l~s~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (613)
T KOG0061|consen 263 SSLGFPCPELENPADFLLDLLSVDSGTREL-------------------EEAVRIAKLINKFSQTDNLKKTLEALEKSLS 323 (613)
T ss_pred HhCCCCCCCcCChHHHHHHHHccCCCchhH-------------------HhHHHHHHHhhhccccchhhhhHHHHhhhcc
Confidence 999999999999999999998853 1110 00011111222222 1111111100000000
Q ss_pred hccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 005423 391 EKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNS 470 (697)
Q Consensus 391 ~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~ 470 (697)
+ ....+....++||.|+++|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||++.++.
T Consensus 324 ~--~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 401 (613)
T KOG0061|consen 324 T--SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMT 401 (613)
T ss_pred c--ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHH
Confidence 0 11111122789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH-HHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHH
Q 005423 471 LLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLL 549 (697)
Q Consensus 471 ~~~~~-~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~ 549 (697)
|.++. .++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..+
T Consensus 402 f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~ 481 (613)
T KOG0061|consen 402 FLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSL 481 (613)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 88876 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCC-
Q 005423 550 VNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ- 628 (697)
Q Consensus 550 ~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~- 628 (697)
+++++++++++++||...|++++++++++|++|+|||++.++||+ |++|++|+|+++|++||+++|||.+....|..
T Consensus 482 ~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~ 559 (613)
T KOG0061|consen 482 VAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhccccccccC
Confidence 999999999999999999999999999999999999999999996 45679999999999999999999973333422
Q ss_pred ---CccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 005423 629 ---VRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNT 681 (697)
Q Consensus 629 ---~~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~~~ 681 (697)
.+..+|+++++. .++ ...++|.|+.++++++++|++++|++|+++.|++.
T Consensus 560 ~~~~~~~~~~~~l~~-~~~--~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGEDVLKQ-LGF--EDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHHHHHh-cCC--cccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 226799999998 888 35789999999999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-99 Score=872.79 Aligned_cols=537 Identities=24% Similarity=0.404 Sum_probs=469.9
Q ss_pred cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccEEEEcCccccCCCCC
Q 005423 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (697)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (697)
..+.+|+|+|+++++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35679999999999999999999999999999999999988754457999999987542 2457899999999999999
Q ss_pred HHHHHHHHHHcCCCcc----------------------cccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 199 VREYLYYSALLQLPGF----------------------FCQR------KNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 199 V~e~l~~~~~l~l~~~----------------------~~~~------~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
|+|||.|++.++++.. .+.. .++|||||||||+|||||+.+|+||+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999887665431 1111 14799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCchHHH
Q 005423 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 330 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~pad~~ 330 (697)
|||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc-----C--CCcCCCCCC
Q 005423 331 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE-----G--PFLKSKGKA 403 (697)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~ 403 (697)
+++++.+.+. ..+..+..+++.+.|+.++.+++..+........+ . .....++..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 9887644211 01112344566777777766555444333211110 0 011234678
Q ss_pred CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005423 404 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 482 (697)
Q Consensus 404 s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~-~~v~~~~~ 482 (697)
+|++|+.+|++|+++++||||.++++|+++++++|+++|++||++++++.++++|.|++|+++++++|.++ ..++.++.
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988875 55789999
Q ss_pred hHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005423 483 EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIW 562 (697)
Q Consensus 483 er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~ 562 (697)
||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~ 497 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF 497 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcc-CCCCC-----ccccHHH
Q 005423 563 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PVGQV-----RTISGYQ 636 (697)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~-~~~~~-----~~~~G~~ 636 (697)
|+..+|+.+++++++++++|+||++++++||+ |+.|++|+||++|++||++.|||.|..+ +|... +..+|++
T Consensus 498 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~--~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~ 575 (617)
T TIGR00955 498 SSTSMALTVGPPFVIPFLLFGGFFINSDSIPV--YFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEV 575 (617)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccChhhccH--HHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHH
Confidence 99999999999999999999999999999995 5567999999999999999999999876 55432 2467999
Q ss_pred HHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 005423 637 ALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKN 680 (697)
Q Consensus 637 ~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~~ 680 (697)
+|+. ||++ ..+.|.|+++|++++++|++++|++||++.+++
T Consensus 576 ~l~~-~g~~--~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 576 ILET-LSFR--NADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred HHHh-cCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9997 9993 467899999999999999999999999987664
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-97 Score=857.55 Aligned_cols=549 Identities=24% Similarity=0.380 Sum_probs=449.1
Q ss_pred CceEEEEeEEEEEeccc------------------------ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+..++|.|++++.+..+ ...+.+|+|||+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 45788888888875221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc----------------------c
Q 005423 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF----------------------F 215 (697)
Q Consensus 159 ~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~----------------------~ 215 (697)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+.+.++++.. .
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 23569999999999999999999998765544311 0
Q ss_pred -----cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 216 -----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 216 -----~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
++..++|||||||||+||++|+.+|+||||||||+|||+.++.++++.|++++++|+|||+++|||+.+++++||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 112468999999999999999999999999999999999999999999999998899999999999878899999
Q ss_pred EEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHH
Q 005423 291 RICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLE 370 (697)
Q Consensus 291 ~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (697)
++++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+.+. ..... .+.....+.+.
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~~~---------~~~~~~~~~l~ 341 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGVSE---------REKPNVKQSLV 341 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCccc---------cccchHHHHHH
Confidence 99999999999999999999999999999999999999999988654211 00000 00001112344
Q ss_pred HHHhcCHHHHHHHHHHHH--hhh----------ccCC-CcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 005423 371 ATYQSSADAAAVETMILR--LTE----------KEGP-FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMIL 437 (697)
Q Consensus 371 ~~~~~s~~~~~~~~~~~~--~~~----------~~~~-~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ 437 (697)
+.|++... ++..+..+. ... .+.. ..+..+.++||+|+.+|++|++++ |||+.+.++|+++++++
T Consensus 342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~ 419 (659)
T PLN03211 342 ASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAA 419 (659)
T ss_pred HHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHH
Confidence 44532111 111111000 000 0000 011234578999999999999988 89999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHH
Q 005423 438 TLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLI 516 (697)
Q Consensus 438 al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~-~~~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~ 516 (697)
|+++|++||+++ +.++++|.|++||++++..+.+ +..++.|+.||++|+||+++|+|++++|++|++++|+|+.++.
T Consensus 420 ~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~ 497 (659)
T PLN03211 420 ALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497 (659)
T ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 6789999999999988877654 4678999999999999999999999999999999999999999
Q ss_pred HHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccc
Q 005423 517 SISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPV 596 (697)
Q Consensus 517 ~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~ 596 (697)
+++|++|+|||+||++++.+|++|+++++++.++++++|+++++++||+.+|+.+++++++++++|+||+++ +||+
T Consensus 498 ~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-- 573 (659)
T PLN03211 498 PTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-- 573 (659)
T ss_pred HHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 7885
Q ss_pred ccccccccCHhHHHHHHHHHHHhCCCc-----cCCCCCc--cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHH
Q 005423 597 WTYPISYVAFHTYSIKGLLENEYLGTS-----FPVGQVR--TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLL 669 (697)
Q Consensus 597 W~~w~~yiSp~~Ya~e~l~~nef~g~~-----~~~~~~~--~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~ 669 (697)
|+.|++|+||++|++||+++|||.+.. ++|..+. ...+..++.. ..++ ..+.|.|+++|++++++|++++
T Consensus 574 ~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~l~ 650 (659)
T PLN03211 574 CMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE-DVAG--QISPATSVSVLIFMFVGYRLLA 650 (659)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh-hhhc--ccchHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999998643 3454221 1111223332 3342 3468999999999999999999
Q ss_pred HHHHHhhc
Q 005423 670 FVLLYLRV 677 (697)
Q Consensus 670 ~i~L~~~~ 677 (697)
|++|++.+
T Consensus 651 ~~~L~~~~ 658 (659)
T PLN03211 651 YLALRRIK 658 (659)
T ss_pred HHHHHhcc
Confidence 99998643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-96 Score=909.05 Aligned_cols=548 Identities=21% Similarity=0.314 Sum_probs=476.9
Q ss_pred CceEEEEeEEEEEeccc--------ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005423 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (697)
+..++|+||+|.++.+. ...+++|+|||+.++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999996321 13457999999999999999999999999999999999997643 3679999999
Q ss_pred EeCCC--CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc----------------------ccccC-----CCCCHH
Q 005423 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF----------------------FCQRK-----NGLPCG 225 (697)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~----------------------~~~~~-----~~LSGG 225 (697)
.+... .++.+|||+|++.+++.+||+|||.|++.++++.. .++.. ++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 23568999999999999999999999876654321 11221 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEEEEe
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 304 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv~~G 304 (697)
|||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999998788999999999996 8999999
Q ss_pred Cc----hhhHHhhhhc-CCC-CCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHH
Q 005423 305 ET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSAD 378 (697)
Q Consensus 305 ~~----~~~~~~f~~~-g~~-~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 378 (697)
++ +++.+||+++ |.+ ||+..|||||++++++.+.+. ....++.+.|+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-----------------------~~~~d~~~~~~~s~~ 1160 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-----------------------KLGIDFAEHYKSSSL 1160 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-----------------------cccchHHHHHhccHH
Confidence 96 5889999997 675 999999999999887543110 001247788998888
Q ss_pred HHHHHHHHHHhhhcc----CCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH--
Q 005423 379 AAAVETMILRLTEKE----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL-- 452 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~-- 452 (697)
++...+.+++..... .....+++++++++|+++|++|+++++||||.++++|+++++++|+++|++||++++++
T Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~ 1240 (1470)
T PLN03140 1161 YQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSN 1240 (1470)
T ss_pred HHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcch
Confidence 777665554332211 11123568899999999999999999999999999999999999999999999999765
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccc
Q 005423 453 -SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGL 530 (697)
Q Consensus 453 -~~i~~r~g~lff~~~~~~~~~~~-~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl 530 (697)
.++++|.|++|+++++.++.++. .+|.+..||++|+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||
T Consensus 1241 ~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl 1320 (1470)
T PLN03140 1241 ANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAF 1320 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 57888999999999998887654 4699999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHH
Q 005423 531 RDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYS 610 (697)
Q Consensus 531 ~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya 610 (697)
++++.+||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++++++||+ +| .|++|+||++|+
T Consensus 1321 ~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~-~W~~~isp~~y~ 1398 (1470)
T PLN03140 1321 EWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WW-VWYYWICPVAWT 1398 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HH-HHHHHcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996 35 579999999999
Q ss_pred HHHHHHHHhCCCccCCCCCc---cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005423 611 IKGLLENEYLGTSFPVGQVR---TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 678 (697)
Q Consensus 611 ~e~l~~nef~g~~~~~~~~~---~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~ 678 (697)
++||+.|||.|.+++|..++ ..++++++...||+ ..++.|++++++++|+++|++++++++++...
T Consensus 1399 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1399 VYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGY--DPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCc--CcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887665443 35788998777999 35689999999999999999999999987653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-96 Score=907.88 Aligned_cols=539 Identities=22% Similarity=0.343 Sum_probs=468.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCccEEEEcCccccCCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (697)
.+++|+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||++... .++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999997421 1246999999987531 23469999999999999
Q ss_pred CCHHHHHHHHHHcCCCc---------------------------ccc-----ccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 197 LTVREYLYYSALLQLPG---------------------------FFC-----QRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~~---------------------------~~~-----~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
+||+|+|.|++.++.+. ..+ +..++|||||||||+||++|+.+|+||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999987654321 000 1236899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCC
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIM 323 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 323 (697)
|||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999996 499999999999889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc-----------
Q 005423 324 QSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK----------- 392 (697)
Q Consensus 324 ~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~----------- 392 (697)
.||+||++++.+.+.+. ....... ......+++++.|++|+.++++.+.+++....
T Consensus 313 ~n~aDfl~~~~~~~~~~---~~~~~e~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQ---IKPGYEK----------KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYR 379 (1394)
T ss_pred CChHHHHHhccChhhhh---ccccccc----------cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHH
Confidence 99999988876543211 1111000 00112356788898888776655544321100
Q ss_pred --------cCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005423 393 --------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFV 464 (697)
Q Consensus 393 --------~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff 464 (697)
......+.+..|+++|+++|++|+++++||||.++++|+++++++|+++|++||+++++++++++|.|++||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~ 459 (1394)
T TIGR00956 380 ESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFF 459 (1394)
T ss_pred HHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Confidence 001112457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHH
Q 005423 465 FVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNF 544 (697)
Q Consensus 465 ~~~~~~~~~~~~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~ 544 (697)
++++.+|+++..++.++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++
T Consensus 460 ~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~ 539 (1394)
T TIGR00956 460 AILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLIL 539 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcc
Q 005423 545 FMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF 624 (697)
Q Consensus 545 ~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~ 624 (697)
+++.++++++++++++++||+.+|+.+++++++++++|+||++++++||+ |+.|++|+||++|++||++.|||+|..+
T Consensus 540 ~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~~~~~ 617 (1394)
T TIGR00956 540 FICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRRF 617 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999995 6677999999999999999999999888
Q ss_pred CCCC------------------------C--ccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005423 625 PVGQ------------------------V--RTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 677 (697)
Q Consensus 625 ~~~~------------------------~--~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~ 677 (697)
+|.. + +.++|+++|+..|++ ...++|+|+++|++|+++|+++.++++.+..
T Consensus 618 ~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 618 ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8741 0 146999999976888 3578999999999999999999999998876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-95 Score=897.15 Aligned_cols=562 Identities=22% Similarity=0.333 Sum_probs=480.3
Q ss_pred CCceEEEEeEEEEEe-c----------------------------ccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHH
Q 005423 102 AGASVVWKDLTVTIK-G----------------------------KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~-~----------------------------~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTL 152 (697)
+...++|+||++.-. . +++..+.+|+||||.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 345689999988764 0 01234569999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCC--CCccEEEEcCccccCCCCCHHHHHHHHHHcCCC------------------
Q 005423 153 LRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLP------------------ 212 (697)
Q Consensus 153 l~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~------------------ 212 (697)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+|||.|++.++.+
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998764467999999987532 246799999999999999999999998654310
Q ss_pred -----------------------------------ccc-----cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005423 213 -----------------------------------GFF-----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 252 (697)
Q Consensus 213 -----------------------------------~~~-----~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL 252 (697)
+.. ++..++|||||||||+||++|+.+|++|||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 000 1233799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCchHHHH
Q 005423 253 DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 331 (697)
Q Consensus 253 D~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~pad~~l 331 (697)
|+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999986 58999999999988999999999999999999999999999999999999999999999888
Q ss_pred HHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhh----ccCCCcCCCCCCCHHH
Q 005423 332 RAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTE----KEGPFLKSKGKASSAT 407 (697)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~ 407 (697)
++.+...... .+... +.+.. ....+++.+.|+++..++++.+.+..... .......+++..+++.
T Consensus 448 ~v~s~~~~~~-----~~~~~--~~p~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~ 516 (1470)
T PLN03140 448 EVTSKKDQEQ-----YWADR--NKPYR----YISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKME 516 (1470)
T ss_pred HhcCchhhhh-----hhhcc--CCccc----cCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHH
Confidence 8766432211 11110 00000 01235688899998877666555432111 1111122458899999
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005423 408 RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL---SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEI 484 (697)
Q Consensus 408 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~---~~i~~r~g~lff~~~~~~~~~~~~v~~~~~er 484 (697)
|++.|++|+++.++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||++++.+|.++..++.++.||
T Consensus 517 q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r 596 (1470)
T PLN03140 517 LLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRL 596 (1470)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999997542 35677889999999999999999999999999
Q ss_pred HHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005423 485 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 564 (697)
Q Consensus 485 ~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~ 564 (697)
+||+|||++++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+
T Consensus 597 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~ 676 (1470)
T PLN03140 597 PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRT 676 (1470)
T ss_pred chhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCC---CCCccccHHHHHhhh
Q 005423 565 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV---GQVRTISGYQALQSA 641 (697)
Q Consensus 565 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~---~~~~~~~G~~~L~~~ 641 (697)
+.+|+.+++++++++++|+||++++++||+ |+.|++|+||++||+||+++|||.+..+.+ .....++|+++|+.
T Consensus 677 ~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~--w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~- 753 (1470)
T PLN03140 677 MIIANTGGALVLLLVFLLGGFILPKGEIPN--WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI- 753 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHccceechHhCch--HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-
Confidence 999999999999999999999999999995 556799999999999999999998876542 22236899999987
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005423 642 YDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 677 (697)
Q Consensus 642 ~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~ 677 (697)
+|+.....++|+|+++|++|+++|+++++++|++..
T Consensus 754 ~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 754 FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999554557899999999999999999999999866
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-93 Score=887.68 Aligned_cols=546 Identities=25% Similarity=0.376 Sum_probs=471.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYG 182 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~ 182 (697)
..++|+||+++++.+ +..+.+|+|||+++++||++||+||||||||||||+|+|+.+++...+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 358999999998532 234679999999999999999999999999999999999987533345999999998642 346
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHHcCCCcc----------------------ccccCC----CCCHHHHHHHHHHHHH
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGF----------------------FCQRKN----GLPCGERRRVRIAREL 236 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~----------------------~~~~~~----~LSGGqrqRv~IA~aL 236 (697)
.++||+|++.+++.+||+|||.+++.++++.. .++..+ +|||||||||+||+||
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 79999999999999999999999876654321 111222 7999999999999999
Q ss_pred hhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC-eEEEEeCc----hhhH
Q 005423 237 VMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LACL 310 (697)
Q Consensus 237 ~~~P~-iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~~~ 310 (697)
+.+|+ ||||||||+|||+.++..|++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ ++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 999999999999999999999999999889999999999987788899999999987 99999997 5689
Q ss_pred HhhhhcCC-CCCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 005423 311 QHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRL 389 (697)
Q Consensus 311 ~~f~~~g~-~~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~ 389 (697)
+||+++|+ +||++.|||||++++++.+... + ..+++.+.|+.|...++..+.+++.
T Consensus 997 ~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------~---~~~~~~~~~~~s~~~~~~~~~~~~~ 1053 (1394)
T TIGR00956 997 NYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------H---ANQDYHEVWRNSSEYQAVKNELDRL 1053 (1394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------c---hhccHHHHHhcCHHHHHHHHHHHHh
Confidence 99999996 9999999999999988643211 0 0123567788777766655544432
Q ss_pred hhcc----C---CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005423 390 TEKE----G---PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAI 462 (697)
Q Consensus 390 ~~~~----~---~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~l 462 (697)
.... . ....+++++||++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.+++||+|++
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~ 1133 (1394)
T TIGR00956 1054 EAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAV 1133 (1394)
T ss_pred hcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 2110 0 01114578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHh-HhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHH-----
Q 005423 463 FVFVSFNSLLNIAGVPALMKEIKTY-ASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSL----- 536 (697)
Q Consensus 463 ff~~~~~~~~~~~~v~~~~~er~vf-~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~----- 536 (697)
|+++.+..++....+|.|+.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1134 f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~ 1213 (1394)
T TIGR00956 1134 FMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVH 1213 (1394)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccccccc
Confidence 9998888777667789998988885 8999999999999999999999999999999999999999999988866
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHH
Q 005423 537 --LMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGL 614 (697)
Q Consensus 537 --f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l 614 (697)
|++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||++++++||. +|+ |++|+||++|+++|+
T Consensus 1214 ~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l 1291 (1394)
T TIGR00956 1214 ERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQAL 1291 (1394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 465 699999999999999
Q ss_pred HHHHhCCCccCCCCC------------------------------------c----cccHHHHHhhhcCccccCCCchhH
Q 005423 615 LENEYLGTSFPVGQV------------------------------------R----TISGYQALQSAYDISSKSNSKWGN 654 (697)
Q Consensus 615 ~~nef~g~~~~~~~~------------------------------------~----~~~G~~~L~~~~~~~~~~~~~w~~ 654 (697)
+.|||.|.++.|... + +.+|+++|+. +++ ...++|+|
T Consensus 1292 ~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~--~~~~~w~~ 1368 (1394)
T TIGR00956 1292 LSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISS--KYSGRWRN 1368 (1394)
T ss_pred HHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCC--cccccccc
Confidence 999999987655321 1 3599999997 888 35689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 005423 655 LLVLFLMAIGYRLLLFVLLYLRVKK 679 (697)
Q Consensus 655 ~~iL~~~~v~~~~l~~i~L~~~~~~ 679 (697)
++++++|++++ +++++.|+++.|+
T Consensus 1369 ~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1369 FGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred hhhhhHHHHHH-HHHHHhhheEEEc
Confidence 99999999999 8888888877553
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-94 Score=844.60 Aligned_cols=547 Identities=24% Similarity=0.365 Sum_probs=476.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCC
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPY 181 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~ 181 (697)
....|+|+.++++.++ +++++|+||+|.++||.++||||+|||||||||++|+||...+ .++|+|.+||.+.. ...
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 3578999999886543 6789999999999999999999999999999999999997654 68999999999864 335
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccc--------------------------cCCCCCHHHHHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--------------------------RKNGLPCGERRRVRIARE 235 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~--------------------------~~~~LSGGqrqRv~IA~a 235 (697)
+.+|||.|+|.|.+.+||+|.|+|++.+|+|...+. ...|||.+||||++||.+
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 789999999999999999999999999998765322 127899999999999999
Q ss_pred HhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe-CCeEEEEeCchh----h
Q 005423 236 LVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA----C 309 (697)
Q Consensus 236 L~~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~----~ 309 (697)
|+.+| .||+|||||||||+.++..|++.||++++.|+||+||||||+.++++.||++++|+ +|++||+|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 89999999999999999999999999999999999999999999999999999996 789999999754 5
Q ss_pred HHhhhhc-CCCCCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005423 310 LQHFSNA-GFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 388 (697)
Q Consensus 310 ~~~f~~~-g~~~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~ 388 (697)
++||+++ |.+||...|||||+|++++...+. . .-.++.+.|++|++++++.+.+++
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~------~-----------------~~~D~a~~w~~S~e~k~~~e~v~~ 1080 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA------S-----------------LSVDFAEIWKNSEEYKRNKELVKE 1080 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc------c-----------------cCccHHHHHhccHHHHHHHHHHHH
Confidence 6799999 599999999999999998754221 0 012578899999999999888876
Q ss_pred hhhccC-----CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005423 389 LTEKEG-----PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 463 (697)
Q Consensus 389 ~~~~~~-----~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lf 463 (697)
+.+... ...++++++|+|.|++.++||+++.+||+|.|+++|++++++.||++|+.||+.|++.+++||.+|++|
T Consensus 1081 l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~y 1160 (1391)
T KOG0065|consen 1081 LSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAY 1160 (1391)
T ss_pred HhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHH
Confidence 544321 123456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHH
Q 005423 464 VFVSFNSLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVL 542 (697)
Q Consensus 464 f~~~~~~~~~~~~v-~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l 542 (697)
+.+++......+.+ +....||.+++||+++|+||+.+|++|++++|+|+.++++.+|.+|+|+|+|+.+++.+|++|++
T Consensus 1161 ma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~ 1240 (1391)
T KOG0065|consen 1161 MATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLL 1240 (1391)
T ss_pred HHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHH
Confidence 99988877666544 56677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCC
Q 005423 543 NFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGT 622 (697)
Q Consensus 543 ~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~ 622 (697)
.++++.++.+.+|+++.+++||.++|.++.+.+..++.+|+|+++|+..||+ +|+ |+||+||++|.+++|+..++++.
T Consensus 1241 ~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~ 1318 (1391)
T KOG0065|consen 1241 FMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDV 1318 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999997 465 79999999999999999999998
Q ss_pred ccCCCCCc--------cccHHHHHhhhcC----ccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005423 623 SFPVGQVR--------TISGYQALQSAYD----ISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 679 (697)
Q Consensus 623 ~~~~~~~~--------~~~G~~~L~~~~~----~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~ 679 (697)
+-.|...+ ..+-.++++..+| +-. +..-....+.+.+.+++.+++.+..++..+-
T Consensus 1319 ~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~--n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~w 1385 (1391)
T KOG0065|consen 1319 EVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLH--NPLATTACVYCAYTVADAFLAAFNIKYLNFW 1385 (1391)
T ss_pred ceeeecCCccccCCCCCcCHHHHHHHHhccCcceec--cCcceeEEEEeeeehHHHHHHHHHHHHHHHH
Confidence 77664332 2344567777677 411 1112223455667888888888888776543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-85 Score=765.33 Aligned_cols=541 Identities=26% Similarity=0.434 Sum_probs=478.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCccEEEEcCccccCCCCCH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV 199 (697)
...+|+|++|.++|||++.++||.||||||||++|+|.++......|+|.+||.+.+ .+++.++|+.|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 357999999999999999999999999999999999998765555789999998643 235789999999999999999
Q ss_pred HHHHHHHHHcCCCccc----cc----------------------------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 200 REYLYYSALLQLPGFF----CQ----------------------------RKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 200 ~e~l~~~~~l~l~~~~----~~----------------------------~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+|+|.|++.++.+... .| -.+|+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9999999998876321 11 128999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCc
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~p 326 (697)
+|+|||+.++.++++.||++++ .+.|++++++||+++++++||+|++|.+|++||+||.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 9999999999999999999995 589999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc----cCCCcCCCCC
Q 005423 327 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK----EGPFLKSKGK 402 (697)
Q Consensus 327 ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~ 402 (697)
|||+.++.+ ..+. .+.+..+.... ......++.+.|.+++.++++...++..... +.....+++.
T Consensus 367 ADfLt~vts-~k~~----~~~~~~~~~~~------~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~ 435 (1391)
T KOG0065|consen 367 ADFLTEVTS-KKDQ----EQYWNKRSKPY------PYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYS 435 (1391)
T ss_pred HHHHHHhhc-Cccc----cccccccCCCc------ccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCcee
Confidence 997766555 2111 11111111111 1112357889999999998887776543221 1223346789
Q ss_pred CCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005423 403 ASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPALM 481 (697)
Q Consensus 403 ~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~-~~~~~i~~r~g~lff~~~~~~~~~~~~v~~~~ 481 (697)
.++|.|++.|+.|.++.+.||..++..++++.+++|+++|++|++.+ .+..+...|.|++||++++.+|++++.++..+
T Consensus 436 v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~ 515 (1391)
T KOG0065|consen 436 VPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTF 515 (1391)
T ss_pred ccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 88888999999999999999999999999999
Q ss_pred HhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005423 482 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 561 (697)
Q Consensus 482 ~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~ 561 (697)
+.||||+|||...+|+++||.++.++.++|+.++.+++|.+|+||++||.+++++||+++++++++.+|+.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCC------------C
Q 005423 562 WKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ------------V 629 (697)
Q Consensus 562 ~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~------------~ 629 (697)
+++...|+.++++.++++.+++||+||.++||+ |+.|++|+||+.|++|+|+.|||++.+++|.+ .
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~ 673 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENK 673 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccc
Confidence 999999999999999999999999999999985 77789999999999999999999999998861 0
Q ss_pred ---------c--cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005423 630 ---------R--TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 677 (697)
Q Consensus 630 ---------~--~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~ 677 (697)
| ++.|.++++..|++ ...+.|+|++|++||.++|.++..+++-+.+
T Consensus 674 ~c~~~~~~~G~~~v~g~~~l~~~~~y--~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 674 VCAATGATLGNDYVSGRDYLKVQYQY--EYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cchhhccccCceEEeccccccccccc--ccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 1 45777777776776 4689999999999999999999999988766
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=394.51 Aligned_cols=198 Identities=27% Similarity=0.358 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|. ...+|+|||+++++||+++|+||||||||||||||+|+.++++ |+|.++|.+...
T Consensus 2 mi~i~~l~K~fg-----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSFG-----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEeC-----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 478999999983 5689999999999999999999999999999999999999886 999999975422
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+|+|+|+..|||++||.||+.++- .+++.+..+.+|.+|||||||||||||||+.
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 2467999999999999999999997752 3456777788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+++++|||||+|||+...+|++.+++|+++|.|.||+||.. ..+.+.+|||+.|++|+++..|++++++.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999988875 58889999999999999999999887653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=384.91 Aligned_cols=202 Identities=24% Similarity=0.304 Sum_probs=181.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|..++.....+|+|||++|++||+.+|+|.||||||||+|++.++..|++ |+|.++|+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 68999999997543334679999999999999999999999999999999999999986 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.||+++|+..|+...||.||+.|.. ..++++..+++|.+|||||||||+|||||+.
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 2467999999999999999999998853 3456777788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+||++|||||+|||.+...|+++|+++.+ .|.||++++|+. +.+.++||||.||++|++|+.|++.+++.
T Consensus 159 ~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 159 NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999999999999999999999999999985 599999988886 68999999999999999999999988764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=370.99 Aligned_cols=208 Identities=25% Similarity=0.434 Sum_probs=185.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++||++.|. .+.+++|+|++|++||+++++|||||||||+||+|.++++|++ |+|.+||+++.. .
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999984 5679999999999999999999999999999999999999986 999999998654 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCC--ccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLP--GFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~--~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.+|||-|+..|||++||.||+.+.- .++++ ++.+++|++|||||+|||.+||||+.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 568999999999999999999997632 33454 367899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCC
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGF 318 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~ 318 (697)
|+||++|||+++|||.++.++-+.++++++ -|+|||++||+ .+|+++++|||++|++|+++.+++|++++.
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~------- 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA------- 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh-------
Confidence 999999999999999999999999999985 59999998776 579999999999999999999999999875
Q ss_pred CCCCCCCchHHHHHHhc
Q 005423 319 PCPIMQSPSDHFLRAIN 335 (697)
Q Consensus 319 ~~p~~~~pad~~l~~~~ 335 (697)
||++-|+..+.
T Consensus 226 ------~Pan~FV~~f~ 236 (309)
T COG1125 226 ------NPANDFVEDFF 236 (309)
T ss_pred ------CccHHHHHHHh
Confidence 67766766543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=365.66 Aligned_cols=199 Identities=27% Similarity=0.408 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..+++++|++++ +.+.+++|||++|++||+++||||||||||||||+|.|+++|+. |+|.++|+++..
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHH
Confidence 469999999998 45689999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcc-ccccCCCCCHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGF-FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~-~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++++|+++|+..||..+||+||+.|.. ..+|++. .+..|.+|||||+||++|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 2357999999999999999999998732 2345555 67789999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+||++||||+||||.++..+.+++++|++ -|.|+++++|+. .+++.+|||+++|.+|+|+++|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999985 489999988875 58999999999999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=375.24 Aligned_cols=198 Identities=27% Similarity=0.381 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|.. |+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 488999999994 5689999999999999999999999999999999999999876 999999997643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.++||||.......+||+|.+.++.. +++.+...+...+|||||||||.|||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 23579999999888888999999977532 2233334556689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+||+||||||+||...+.++++++++++ ++|+|||+++|++ ..+..+||++++|++|++++.|+++++++
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 99999999999999999999999999999999 5699999998887 47889999999999999999999998863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=364.45 Aligned_cols=189 Identities=30% Similarity=0.415 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|..+.. ...+|++||+.+++||++||+|||||||||||++|.|+..|++ |+|.++|++...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 568999998864332 2679999999999999999999999999999999999999876 999999986532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCcccc-ccCCCCCHHHHHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFC-QRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~-~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+|||+|+..|+|.+||.||+.+... +++.+... +++.+|||||||||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 23579999999999999999999986422 23443344 67899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+.+|++|++||||.+||+.++.+|+++|++++++ |+|||++||++ ++...|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999865 89999999986 57889999999999993
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=365.47 Aligned_cols=185 Identities=32% Similarity=0.427 Sum_probs=169.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+.++++++.|. ...+|+|||+++.+||+++|+||||||||||||+|+|+.+|++ |+|.++|++...+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 588999999985 3689999999999999999999999999999999999999986 99999999887777889
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+||+|++.|+|.+||.||+.++.. .+|.+..+++|++|||||||||+|||||+.+|+||+|
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999977542 3466677889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
|||+++||+.|+.++.+.|.++. +.++||+++||+. +|+..++|||++|.++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999997 5689999988765 6888999999999984
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=359.87 Aligned_cols=199 Identities=31% Similarity=0.418 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+ ..+++|+|||+.+++||++||+||||||||||||+|+|+.+++. |+|.+||.++..
T Consensus 3 ~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 3 MIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGKE 75 (258)
T ss_pred eEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchHH
Confidence 689999999997 35689999999999999999999999999999999999998876 999999976422
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH---------cCCC------------------ccccccCCCCCHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL---------LQLP------------------GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------l~l~------------------~~~~~~~~~LSGGqrqR 229 (697)
.++.+||++|++.|.+.++|.+|+..+.. +++. +..-.+...|||||+||
T Consensus 76 lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQR 155 (258)
T COG3638 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQR 155 (258)
T ss_pred HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHH
Confidence 24679999999999999999999976532 1221 11223447999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|+||+.|||+++|||.++.+||+.|++++ ++|.|||++.|+- +.+.++||||+-|++|++||+|++++
T Consensus 156 VaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhh
Confidence 999999999999999999999999999999999999998 5689999999986 57889999999999999999999988
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+-+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=378.18 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.+.++||++.|.. .+.+|+||||++++||++||+||||||||||+|+|+|+.+|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 4788999999841 4689999999999999999999999999999999999999875 999999987543 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCC-------------------ccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLP-------------------GFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~-------------------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+||++|++.+++.+||+|+|.|.+.++.. +..+++.++||+||||||+||+||+.+|+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999997655432 21234568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
+|||||||+|||+.++.++.+.|++++++| +||++++|++ .++..+||+|++|++|+++++|+++++...+..
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 999999999999999999999999999887 7999988876 588899999999999999999999887665543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=384.43 Aligned_cols=199 Identities=28% Similarity=0.429 Sum_probs=180.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (697)
..++++||++.|. ...+|+|+|+.|++||+++|+||||||||||||+|+|+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4689999999983 5689999999999999999999999999999999999999986 999999998643 3
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
++.+|+|+|+..|||++||+||+.|+.. +++.+...+++++|||||||||+|||||+.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 5789999999999999999999999754 23445567788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|+||||.|+||..-+.++..-|+++++ .|.|.|++||+. .|+..++|||++|++|+|...|+++++..
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999999984 599999988875 68999999999999999999999999854
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=379.26 Aligned_cols=199 Identities=30% Similarity=0.460 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|.+ ..+|+|+|+++++||+++|+||||||||||||+|||+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 5899999999842 129999999999999999999999999999999999999986 999999998654 24
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+++|+|+..|+|++||+||+.|+.. +++.+.+++++.+|||||||||||||||+.+|++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 789999999999999999999998753 4556677889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
++||||+|+||+..+..+...|+++.+ .|.|+|.+||+. .|+..++|||++|++|++...|++.++.++
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999985 488999987775 689999999999999999999999998653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=366.96 Aligned_cols=199 Identities=29% Similarity=0.414 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (697)
.+.++|+++.+. ...+++|||+.|+.||++||+||||||||||||+|+|+..|+. |+|.+||+ +...
T Consensus 2 ~i~i~~~~~~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhccc
Confidence 467888887763 4578999999999999999999999999999999999999987 99999998 4332
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..++||||+|+..+|+++||.+|+.|+..+ ++.+..+++|.+||||||||||+||||+
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 236899999999999999999999998633 3444557888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
.+|++|+||||+++||...+.++.+.|+++.++ |.|+++++|++ ++++++||||++|++|+|...|+++++.+.
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 999999999999999999999999999999865 99999977765 699999999999999999999999998764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=352.80 Aligned_cols=203 Identities=29% Similarity=0.394 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+.++ ....+|+|||+++.+||+++|+|+||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 3 ~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 3 LLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRAK 78 (252)
T ss_pred eEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccch
Confidence 589999999996432 22369999999999999999999999999999999999999976 999999976432
Q ss_pred -CCccEEEEcCcc--ccCCCCCHHHHHHHHH-----------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERET--TLIGSLTVREYLYYSA-----------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-----------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+.+|+||+ .+-|..||++.|.-.. .++++. ...++|++||||||||++|||||+.
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 256799999997 5778889998885432 234443 4678999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+|++||||||||+||+..+.+|+++|.++++ .|.|.|+++|+ ...+..+||||+||++|++|+.++++++.+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999985 47899986655 6789999999999999999999999988753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=358.63 Aligned_cols=197 Identities=27% Similarity=0.395 Sum_probs=170.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~ 181 (697)
..++++|+++.|.+ . ++|+|||+.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 36899999999952 2 59999999999999999999999999999999999999875 9999999875443 3
Q ss_pred ccEEEEcCcc---ccCCCCCHHHHHHHHH-----------------------HcCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 182 GSYGFVERET---TLIGSLTVREYLYYSA-----------------------LLQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 182 ~~~~yv~Q~~---~l~~~lTV~e~l~~~~-----------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
..||||||.. .-|| .||+|.+..+. .+++.+..++...+|||||+|||-||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 6899999954 3344 69999987642 1233445567779999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|+|||||+|+|+.++..++++|++++++|+||++++|+ ...+.+.||+|+.| ++++++.|+++++.+
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD-L~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD-LGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-cHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999999999999889999996665 46899999999999 478899999998764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=371.86 Aligned_cols=200 Identities=23% Similarity=0.300 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|..++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 78999999995321 13479999999999999999999999999999999999999876 999999987632
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|+..+++..||+||+.+... +++.+..++++.+|||||||||+|||||+.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 13579999999999999999999987532 233444566779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++||||||||+||+.++..++++|++++++ |.|||+++|+. ..+.++||++++|++|++++.|++++++
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999865 89999988875 5788999999999999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=341.43 Aligned_cols=200 Identities=25% Similarity=0.367 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~~- 180 (697)
..++++||++.|. .+++|+|||+.+++++++|||||||||||||||+|..+.. ++.+++|+|.++|+++..+
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 3589999999984 5689999999999999999999999999999999998754 3456889999999986432
Q ss_pred ------CccEEEEcCccccCCCCCHHHHHHHHHHcCC-----------------------CccccccCCCCCHHHHHHHH
Q 005423 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------------------PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l-----------------------~~~~~~~~~~LSGGqrqRv~ 231 (697)
++++|+|+|.+.-|| +|++||+.|+..++- .+.+++...+|||||+||++
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 468999999999998 899999999854321 12234556799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||+++|.+ ..+.+..|+..++..|++|++|++++++.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 9999999999999999999999999999999999999 457888877765 68889999999999999999999998864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=372.22 Aligned_cols=199 Identities=26% Similarity=0.445 Sum_probs=177.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYDG----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeCC----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 4899999999831 3469999999999999999999999999999999999999876 999999987643 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|++.+++++||+||+.|... +++.+..++.+++|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l 155 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV 155 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999987632 2344455677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||+.++..+.+.|+++.++ |+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 156 FLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999999999999999999999865 89999988876 57899999999999999999999998754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=380.35 Aligned_cols=249 Identities=26% Similarity=0.315 Sum_probs=200.4
Q ss_pred EEEeCccccchhcCCCCcchhhhcCCCCCCCCCCCch--hhhhccCCceEEEEeEEEEEeccc------ccCcceeeeee
Q 005423 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGA--AVARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSSN 130 (697)
Q Consensus 59 ~v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~vs 130 (697)
+++|.|++.++...|.|||++.+.++.+......... ........+.++++||++.|..++ .....+++|||
T Consensus 232 ~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VS 311 (539)
T COG1123 232 EIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVS 311 (539)
T ss_pred EEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeee
Confidence 3799999999999999999999976533211100000 000000345689999999997432 23467999999
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------CCCccEEEEcCcc--ccCCCCCHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------MPYGSYGFVERET--TLIGSLTVRE 201 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------~~~~~~~yv~Q~~--~l~~~lTV~e 201 (697)
|.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+.. ..++.+-+|+|++ .|.|.+||.+
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~ 388 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGD 388 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHH
Confidence 9999999999999999999999999999999976 99999997621 1124566666664 7889999999
Q ss_pred HHHHHH--------------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 202 YLYYSA--------------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 202 ~l~~~~--------------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.... ..+++. ..++++++||||||||++|||||+.+|++|+||||||+||+..+.+|
T Consensus 389 ~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 389 ILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred HHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 985432 123444 46789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 261 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 261 ~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|++++++ |.|.|+++|+ ...+.++||||+||++|++|+.|+.+++++
T Consensus 469 lnLl~~lq~e~g~t~lfISHD-l~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCC-HHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 9999999954 9999996655 678999999999999999999998888764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=366.15 Aligned_cols=198 Identities=28% Similarity=0.368 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHHH
Confidence 589999999984 3469999999999999999999999999999999999999876 999999987532 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+||++|++.+++.+||+||+.+.+.+ ++.+..++..++|||||||||+||+||+.+|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 35799999999999999999999864322 23333445668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++.+
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999988899999988876 58889999999999999999999988764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=371.01 Aligned_cols=198 Identities=26% Similarity=0.409 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999876 999999987642 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+||++||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999988632 2344555678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||..++.++.+.|+++.++ |.|+|+++|++ .++..+||++++|++|++++.|+++++.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 156 LLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864 89999988876 58899999999999999999999988764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=330.65 Aligned_cols=195 Identities=29% Similarity=0.427 Sum_probs=170.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC-Cc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP-YG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~-~~ 182 (697)
+.+++|.+.|.. .==..+.++.+||++||+|||||||||||++|+|+..|.. |+|.+||++.. .+ .+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 456677777642 2234578889999999999999999999999999998876 99999999743 22 36
Q ss_pred cEEEEcCccccCCCCCHHHHHHHH-------------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~-------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
-++.++|+..||.++||.+|+.++ +..++.++.++.|.+|||||||||+|||.|+.+-+||
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 699999999999999999999664 2345667778889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+||||+|+||+.-+.+++.++.+++ +++.|+++++|||. ++.+++|+++++++|+|.+.|+.++.+.
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 9999999999999999999999998 56899999999995 7889999999999999999999987653
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=350.89 Aligned_cols=196 Identities=29% Similarity=0.400 Sum_probs=170.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 46889999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 13469999999999999999999976422 12333345566899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999999999987 489999988876 4788899999999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=337.25 Aligned_cols=198 Identities=31% Similarity=0.389 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
+++++++++|+. ..++++||||.++.||+++|+|||||||||+||+|++++.|+. |+|.++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678899988853 3459999999999999999999999999999999999999986 999999987432 35
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|.++.+..++..+|++|||.|.+.+ ++.+..+++..++|.|+||||+|||||+++|++
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 7899999888999999999999886532 334455677799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|||||||||..+...+.+.+++++++|++||+++|. ..++.++||+|++|++|++|+.|+.+++..
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999997776 579999999999999999999999987654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=368.98 Aligned_cols=198 Identities=27% Similarity=0.458 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+. |+|.++|+++.. .+
T Consensus 6 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999876 999999987643 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+++++||+||+.|... +++.+..++.+++|||||||||+|||||+.+|++
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l 157 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 679999999999999999999988632 2334445677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||+.++.++.+.|+++.++ |+|+|+++|++ .++..+||+|++|++|+++..|+++++..
T Consensus 158 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 158 LLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999865 89999988876 58889999999999999999999998754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=328.92 Aligned_cols=192 Identities=25% Similarity=0.336 Sum_probs=171.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------- 178 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------- 178 (697)
++|+||++.|++ .+.+|+||||.+++||++-|+||||||||||||+|.+...|+. |+|.+||++..
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999963 3679999999999999999999999999999999999999876 99999998742
Q ss_pred -CCCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 179 -MPYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
..+++||.|+||..|+++.||+||+.|... .+|.+....-|.+|||||||||+||||++.
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 125789999999999999999999988632 344455556778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+|++||.||||-+||+..+.+|++++.++.+.|+||++++|+ ...+..+-.|++.|++|+++....
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999998776 467888899999999999987653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=366.72 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=177.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999998862 23999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+++++||+||+.|... +++.+..++.+++|||||||||+|||||+.+|++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999987532 2344455678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++.++.+.|++++++ |+|+|+++|++ .++..+||+|++|++|+++..|+++++.+
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999876 78999988876 57899999999999999999999998864
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=367.54 Aligned_cols=198 Identities=26% Similarity=0.384 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 14 ~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 14 LVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAEN 85 (375)
T ss_pred eEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 999999997632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|++.+++++||+||+.|+.. +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l 165 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999987532 2344455677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||..++..+.+.|++++++ |+|+|+++|++ .++..++|+|++|++|+++..|+++++.+
T Consensus 166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864 89999988876 58899999999999999999999988754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=338.39 Aligned_cols=195 Identities=31% Similarity=0.497 Sum_probs=170.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.+.|+|+++.|+.++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 579999999997543 45679999999999999999999999999999999999998321134999999987532 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.++|++|++.+++.+||+||+.+..... .++....||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 157 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH
Confidence 356999999999999999999998875433 4567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 261 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 261 ~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
.+.|++++++ +.|+|+++||+..++.++||++++|++|++++.|
T Consensus 158 ~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999865 6788887888777888999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=363.79 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=177.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||++.|. .+.+|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 4699999999984 3469999999999999999999999999999999999999876 999999987542
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.+||++|++.+++.+||.||+.+... +++++..+++.++|||||||||+||+||+.+|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23579999999999999999999976432 12333345667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++.+.
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999988899999988875 588999999999999999999999987653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=365.00 Aligned_cols=198 Identities=26% Similarity=0.387 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 2 ~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 2469999999999999999999999999999999999999876 999999987632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+.++||+|++.+++++||+||+.|... +++++..++++.+|||||||||+|||||+.
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~ 153 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999987532 123344456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||+|++|++|++++.|+++++.+
T Consensus 154 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999865 89999988776 58899999999999999999999988754
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=346.76 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.+.++|+++.|++. ..+|+++|+.+++||.++|+|+||||||||+++|+|+++|.. |+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhHH
Confidence 47899999999632 589999999999999999999999999999999999999976 99999998743
Q ss_pred CCCccEEEEcCcc--ccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 179 MPYGSYGFVERET--TLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 179 ~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..++.+|||+|++ +++. -||.|.+.|+. .+++.+..++.+..|||||||||+||.+|+
T Consensus 76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred HhhcceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 2357899999986 5664 59999998863 234555567888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
++|++|+|||||||||+..+.++++.+++|.++ |+|+|+++|+ ...+.++||++++|++|+++++|++.++++.
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999977 6899997776 4689999999999999999999998887653
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=355.59 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 68999999995322122469999999999999999999999999999999999999876 999999987531
Q ss_pred ---CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHHH
Q 005423 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++ .+++ .||.||+.|... +++. ...++.++.||||||||++|||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 134699999986 5665 599999987531 1343 2345677999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH---
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ--- 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~--- 311 (697)
+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||+|++|++|++++.|+++++.+
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~ 236 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHH
Confidence 99999999999999999999999999999999988899999988876 57888999999999999999999998753
Q ss_pred hhhhcCCCCCCC
Q 005423 312 HFSNAGFPCPIM 323 (697)
Q Consensus 312 ~f~~~g~~~p~~ 323 (697)
.+...|+.+|..
T Consensus 237 ~~~~~~~~~p~~ 248 (288)
T PRK13643 237 FLKAHELGVPKA 248 (288)
T ss_pred HHHHcCCCCChH
Confidence 344567776654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=340.67 Aligned_cols=197 Identities=30% Similarity=0.389 Sum_probs=169.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.|.+.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|.+ |+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 36889999885211 11479999999999999999999999999999999999998875 999999987654456799
Q ss_pred EEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 186 FVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
|++|++.+++.+||+||+.+... +++....++.+.+||||||||++|||||+.+|++||||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999988999999976432 12333345567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCch
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 307 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 307 (697)
|||+|||+.++..+.+.|+++.+ .|+|||+++|++ .++.++||++++|+ +|++++.++++
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999964 589999988886 46788999999999 79999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=357.24 Aligned_cols=198 Identities=27% Similarity=0.353 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 4 AIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLA 75 (303)
T ss_pred EEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++|++|++.+++.+||+||+.+... +++++..++.+++|||||||||+|||||+.+|+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999999999975321 123333455668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988899999988876 57889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.50 Aligned_cols=198 Identities=23% Similarity=0.388 Sum_probs=176.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+. |+|.++|++... .+
T Consensus 19 ~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 599999999984 2469999999999999999999999999999999999999876 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|++.+|+++||.||+.|... +++.+..++++++|||||||||+|||||+.+|++
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999987632 2334445677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||..++..+.+.|+++.+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999999999999875 589999988876 58899999999999999999999998764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=340.06 Aligned_cols=190 Identities=29% Similarity=0.465 Sum_probs=164.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 36789999884 2469999999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|++||+.+... +++....++.+..|||||||||+|||+|+.+|++|
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~l 152 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLL 152 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988999999976432 12333344566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999986 489999988876 4788899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=331.34 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 48899999988 34689999999999999999999999999999999999999865 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHcCC-------------------CccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-------------------PGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l-------------------~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
+..++||||...+|+.+||+|||..++..+- .+..+++...|||||||.++|||||+.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 3569999999999999999999987653321 1122344578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|+|||||.||-|.-..+|.+.+++++++ |.||++ ++|....+.+++||.+||.+|++++.|+.+++.+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999965 778888 7888889999999999999999999999998764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=340.59 Aligned_cols=188 Identities=25% Similarity=0.327 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6899999998521 2369999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||.||+.+... +++.+..++.+.+|||||||||+|||||+.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12469999999999999999999986421 223334456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999987789999988876 478889999999999974
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=343.00 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=170.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++... .+
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCccc
Confidence 478999999984 2469999999999999999999999999999999999998875 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+.++|++|++.+++.+||+||+.+.... ++....++.+.+|||||||||+|||||+.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 5699999999999889999999865321 12222344568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999865 89999988886 4678899999999999999999887653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=340.53 Aligned_cols=194 Identities=27% Similarity=0.345 Sum_probs=168.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|.+... .+
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46889999884 2469999999999999999999999999999999999998875 999999986532 12
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||+||+.+... +++....++.+..|||||||||+|||||+.+|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999976432 1233333456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999876 89999988876 57888999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=342.30 Aligned_cols=196 Identities=24% Similarity=0.389 Sum_probs=169.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 46889999884 2469999999999999999999999999999999999998875 999999987432
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.++|++|++.+++.+||+||+.+.... ++....++.++.|||||||||+|||||+.+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 124599999999999999999999864321 2222234556899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 99999999999999999999999999988899999988886 4788999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=364.45 Aligned_cols=198 Identities=30% Similarity=0.468 Sum_probs=175.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 489999999984 2469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+++.+||+||+.+... +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l 154 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999999999999987532 2333445667789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|+++..|+++++..
T Consensus 155 LLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864 89999988876 57889999999999999999999988754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=360.73 Aligned_cols=201 Identities=22% Similarity=0.293 Sum_probs=174.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||++.|..++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999985211 13579999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+.
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 3569999999999999999999987532 233344456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. .++.++||++++|++|++++.|+++++..
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999864 89999988876 57888999999999999999999887753
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=350.24 Aligned_cols=203 Identities=23% Similarity=0.341 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+......+.+|+|||+++++||++||+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 378999999985322112479999999999999999999999999999999999999875 999999987632
Q ss_pred --CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCC--ccccccCCCCCHHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLP--GFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~--~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.+|||+|++. .+...||+||+.+... +++. ...++.++.||||||||++||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 1357999999863 2235799999976421 2343 33567789999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999988875 57888999999999999999999988754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=355.15 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=177.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|..+....+.+|+|||+++++||++||+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 4699999999996322123469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCC
Q 005423 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKN 220 (697)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~ 220 (697)
.++.++||+|++ .+++ .||+||+.++.. ++++ ...++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 134699999986 5665 499999977431 2343 33556778
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +++.++||++++|++|++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVIVMDKGKI 254 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999987899999988875 467889999999999999
Q ss_pred EEEeCchhhHH---hhhhcCCCCC
Q 005423 301 LFFGETLACLQ---HFSNAGFPCP 321 (697)
Q Consensus 301 v~~G~~~~~~~---~f~~~g~~~p 321 (697)
++.|+++++.+ .+...|+.+|
T Consensus 255 ~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 255 LKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999987753 2334455544
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=342.94 Aligned_cols=196 Identities=29% Similarity=0.446 Sum_probs=168.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 368899998842 1469999999999999999999999999999999999998865 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH---------------------------cCCCccccccCCCCCHHHHHHH
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL---------------------------LQLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------------l~l~~~~~~~~~~LSGGqrqRv 230 (697)
++.++|++|++.+++.+||+||+.+... +++....++.+.+|||||||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 2469999999999988999999975321 1222233456689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999999986 489999988886 478889999999999999999988775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=341.73 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=171.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.+.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 67899999885210 11279999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
++.++|++|++.+++.+|++||+.+... +++.+..++.+..|||||||||+|||+|+.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 3469999999999998999999976432 123333455678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999865 89999988886 5788899999999999999999877653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=339.60 Aligned_cols=196 Identities=24% Similarity=0.364 Sum_probs=169.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46889999874 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHHc------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSALL------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++|++|++.+++.+|++||+.+.... .+....++..++||||||||++|||||+.+|+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 24699999999999999999999765321 12222345568899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999987889999988876 5788999999999999999999877653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=342.38 Aligned_cols=196 Identities=25% Similarity=0.337 Sum_probs=169.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 36789999884 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------------CCCccccccCCCCCHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------------QLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------------~l~~~~~~~~~~LSGGqrqRv 230 (697)
+..++|++|++.+++.+||+||+.+.... ++....++.+++|||||||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 24599999999999999999999765321 122223445578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999999987889999988876 4788899999999999999999887753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=351.26 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|.......+++|+|||+++++||+++|+||||||||||+|+|+|+.+|+. |+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 378999999995322122469999999999999999999999999999999999999875 999999987631
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHH-------------------HcCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSA-------------------LLQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-------------------~l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++||+|++ .++ ..||.||+.+.. .+++. ...++.++.|||||||||+||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 124699999986 455 469999997652 12343 334567899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|+|+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|+. .++.++||||++|++|++++.|+++++.
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999864 89999988876 5788999999999999999999988875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=343.55 Aligned_cols=196 Identities=29% Similarity=0.410 Sum_probs=168.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|.. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998741 3469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH---------------------------HcCCCccccccCCCCCHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA---------------------------LLQLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------------------~l~l~~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++.+||+||+.+.. .+++....++.+..|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 1346999999999999899999996521 01222333456689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999999975 489999988876 467889999999999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=335.04 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532 234
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++..|++||+.+... +++....++.++.||||||||++|||+|+.+|++|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 152 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988999999976421 12223345566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999986 489999988876 4788899999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=335.66 Aligned_cols=190 Identities=25% Similarity=0.340 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... .++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 36889999884 2469999999999999999999999999999999999998875 999999986532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|++.+++.+||+||+.+... +++.+..++.++.|||||||||+|||+|+.+|++|||||
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 152 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 69999999999999999999976532 122333345668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999988889999988876 4777899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=352.52 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++|+++.|+++......+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 478999999996432223469999999999999999999999999999999999999875 99999986531
Q ss_pred -----------------------CCCccEEEEcCcc--ccCCCCCHHHHHHHHH-------------------HcCCC-c
Q 005423 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSA-------------------LLQLP-G 213 (697)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-------------------~l~l~-~ 213 (697)
..++.+|||+|++ .++ ..||+||+.|.. .+++. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 0124689999985 455 469999998753 12343 3
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
..++.+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. ..+.++||||+
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~adrv~ 236 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVLEWTKRTI 236 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHHHhCCEEE
Confidence 45677899999999999999999999999999999999999999999999999988899999988875 57889999999
Q ss_pred EEeCCeEEEEeCchhhHH
Q 005423 294 LLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 294 vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|++++.|+++++..
T Consensus 237 vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEECCEEEEECCHHHHhc
Confidence 999999999999988753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=359.44 Aligned_cols=186 Identities=27% Similarity=0.376 Sum_probs=166.3
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CccEEEEcCccc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETT 192 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~ 192 (697)
.+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4569999999999999999999999999999999999999876 9999999876421 457999999999
Q ss_pred cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 193 LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 193 l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
+++++||+||+.+... +++....++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999999999987532 234445567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 254 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.++..+.+.|++++++ |+|||+++|+. .++.++||+|++|++|+++..|++++++.
T Consensus 162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 162 PLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999999854 89999988875 57889999999999999999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=336.60 Aligned_cols=196 Identities=27% Similarity=0.397 Sum_probs=168.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .+
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4688999988421 2569999999999999999999999999999999999998875 999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||+||+.+... +++.+..++...+|||||||||+|||+|+.+|++
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999989999999976432 1233333455689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999986 58999988876 477789999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=339.33 Aligned_cols=196 Identities=25% Similarity=0.366 Sum_probs=170.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 67899999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||+||+.+... +++....++.+..||||||||++|||||+.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 13469999999999988999999976421 122223345668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999999999987799999988886 4788899999999999999999887754
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=343.59 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=170.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....++.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 3589999999984 2469999999999999999999999999999999999998875 9999999875444567
Q ss_pred EEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
++|++|++.+++.+||+||+.+.. .+++.+..++.+.+|||||||||+|||+|+.+|++|||||||+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~ 162 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999999999998899999997531 1334444566778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 251 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999964 589999988876 4678899999999999999988754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=354.23 Aligned_cols=204 Identities=23% Similarity=0.282 Sum_probs=174.5
Q ss_pred ceEEEEeEEEEEecccc--------cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
..++++||++.|..++. ....+|+|||+++++||+++|+|+||||||||+++|+|++++.+ |+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 46999999999963211 13579999999999999999999999999999999999998865 99999998
Q ss_pred eCCC--------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH---------------------cCCC-ccccccCCCCC
Q 005423 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSAL---------------------LQLP-GFFCQRKNGLP 223 (697)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~---------------------l~l~-~~~~~~~~~LS 223 (697)
++.. .++.++||+|++ .+++.+||.||+.+... ++++ ...++++++||
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS 163 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence 7532 135699999997 58889999999865321 2232 23467789999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 224 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
|||||||+|||||+.+|++||+||||+|||..++.+|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 89999977775 57888999999999999999
Q ss_pred EeCchhhHH
Q 005423 303 FGETLACLQ 311 (697)
Q Consensus 303 ~G~~~~~~~ 311 (697)
.|+++++++
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 999988753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=345.05 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 4899999999842 2469999999999999999999999999999999999999875 9999999876421
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++. .+...||.||+.+... +++.+..++.+.+|||||||||+|||||+.+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 246999999963 3446799999987422 1233344567789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|++|||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999987799999988876 577889999999999999999998653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=341.28 Aligned_cols=197 Identities=27% Similarity=0.356 Sum_probs=170.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 388999999984 2369999999999999999999999999999999999998875 999999986431
Q ss_pred --------CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHH
Q 005423 180 --------PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++..||.||+.+... +++....++.+++|||||||||+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 12469999999999988999999976321 12333334567899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987799999988876 5788899999999999999999987764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=353.34 Aligned_cols=186 Identities=27% Similarity=0.328 Sum_probs=165.0
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CccEEEEcCccccCCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLT 198 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lT 198 (697)
+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|.+.... ++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 469999999999999999999999999999999999999875 9999999875322 346999999999999999
Q ss_pred HHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005423 199 VREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259 (697)
Q Consensus 199 V~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 259 (697)
|+||+.+.+. +++....+++.++|||||||||+||+||+.+|++|||||||+|||+.++..
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 9999987432 123333456678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 260 i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.+.
T Consensus 163 l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 163 IWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999988899999988876 588899999999999999999999887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=347.81 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+.+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322123469999999999999999999999999999999999999876 999999987532
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.+|||+|++ .+++ .||.||+.+... +++. ...++.++.|||||||||+||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 134699999986 4665 599999987421 2333 234467799999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+|+.+|+||||||||+|||+.++..+.++|+++++ .|+|||+++|+. .++.++||++++|++|++++.|++++++.
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999985 589999988876 47888999999999999999999888654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=337.50 Aligned_cols=192 Identities=27% Similarity=0.365 Sum_probs=164.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-----~~~~~~~G~I~i~G~~~~~- 179 (697)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.+ |+|.++|++...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~---G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE---GEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC---eEEEECCEEhhhc
Confidence 46889999884 246999999999999999999999999999999999998 6654 999999987432
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCcccccc--CCCCCHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPGFFCQR--KNGLPCGERRRVR 231 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~~~~~~--~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.++ .+||+||+.+.... ++.+..++. +.+|||||||||+
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH
Confidence 134699999999888 78999999764321 122222334 4899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999877 8999988876 47888999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=346.74 Aligned_cols=243 Identities=24% Similarity=0.294 Sum_probs=203.2
Q ss_pred EEEeCccccchhcCCCCcchhhhcCCCCCCCCCCCchhhhhccCCceEEEEeEEEEEecccc------cCcceeeeeeeE
Q 005423 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNGY 132 (697)
Q Consensus 59 ~v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~ 132 (697)
+++|.|.+...++.|.|||++.+.++.+...+.+... ..++.++.+|+.+.|+.++. ....++++||++
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~ 309 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLT 309 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEeccceeE
Confidence 3799999999999999999999987643322222111 13457999999999975532 224699999999
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCccEEEEcCcc--ccCCCCCHHHH
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVREY 202 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~ 202 (697)
+++||.++|+|+||||||||-++|.+++++. |+|.++|+++.. .++.+-.|+||+ .|-|.+||.+.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999999875 999999987642 245688999997 57889999998
Q ss_pred HHHHHHc---------------------CC-CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 203 LYYSALL---------------------QL-PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 203 l~~~~~l---------------------~l-~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
+.-+... ++ |...+++|++.|||||||++|||||+.+|++++||||||+||-..+.+|
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQv 465 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQV 465 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHH
Confidence 8665432 22 2345688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 261 MVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 261 ~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|++|+ +.|.+-++++| +...+..+||+|+||++|+||+.|+++++++
T Consensus 466 v~LLr~LQ~k~~LsYLFISH-DL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 466 LDLLRDLQQKHGLSYLFISH-DLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHhCCeEEEEec-cHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 99999998 56899999555 5678999999999999999999999999875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=344.56 Aligned_cols=197 Identities=22% Similarity=0.358 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChhh
Confidence 589999999884 3469999999999999999999999999999999999998875 999999987531
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|+..+++.+||.||+.+... +++.+..++.+..|||||||||+|||+|
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral 158 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 12469999999999998999999976421 1233334556689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988875 5788899999999999999999987764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=333.91 Aligned_cols=190 Identities=26% Similarity=0.446 Sum_probs=164.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCccE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (697)
++++|+++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .++.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 36889999884 2469999999999999999999999999999999999998875 999999986532 23579
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 185 GFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+|++|++.+++.+||+||+.+.... ++....++.+++|||||||||+|||+|+.+|++|||
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999989999999765321 222223455689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 153 DEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999987789999988876 4788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=361.03 Aligned_cols=197 Identities=28% Similarity=0.374 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 589999999984 3579999999999999999999999999999999999999875 999999987543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.++||+|+..++..+||+||+.++.. +++.+..++..++|||||||||+|||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL 154 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL 154 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 13569999999999889999999976421 1222233456689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+++|++|||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++|||+++|++|++++.|++++++
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999988889999988875 5888999999999999999999998754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=349.74 Aligned_cols=197 Identities=25% Similarity=0.349 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHHH
Confidence 478999999984 3469999999999999999999999999999999999999876 9999999875332
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+||++|++.+++.+||.||+.+.+.+ ++.+..++..+.|||||||||+|||||+.+|+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 35699999999999999999999864422 23333456668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+.+++..
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999975 78999988876 58899999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=338.79 Aligned_cols=197 Identities=21% Similarity=0.335 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+++|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 589999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------c-CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------L-QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l-~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.++|++|+..+++.+||.||+.+... + .+.+...+.++.||||||||++|||+|+.+|
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 12469999999999988999999976421 1 1112223456889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999988899999988876 5788999999999999999999988764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=334.40 Aligned_cols=194 Identities=32% Similarity=0.462 Sum_probs=166.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.++++. ...++|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 67899999985321 11269999999999999999999999999999999999998875 999999987542 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||+||+.+... +++.+..++..+.||||||||++|||||+.+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999976432 1223333456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999987899999988876 4788899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=332.57 Aligned_cols=186 Identities=23% Similarity=0.348 Sum_probs=159.3
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccEE
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYG 185 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (697)
++|+++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|.+... .++.++
T Consensus 2 ~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcceE
Confidence 5788888742 1469999999999999999999999999999999999998875 999999987532 235699
Q ss_pred EEcCccc-cCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 186 FVERETT-LIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 186 yv~Q~~~-l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
|++|++. .+..+||+||+.+... +++.+..++.+.+||||||||++|||||+.+|++|||||||
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999974 2346799999976421 23444456677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 250 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999987899999988876 4678899999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=338.24 Aligned_cols=197 Identities=28% Similarity=0.459 Sum_probs=170.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 367899998842 1469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCc--cccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPG--FFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++.+++.+||+||+.+... +++.. ..++.+.+|||||||||+|||||+.+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999976421 23332 34566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999864 89999988886 4778899999999999999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=334.89 Aligned_cols=189 Identities=30% Similarity=0.386 Sum_probs=160.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|.+.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 46889999885311 11479999999999999999999999999999999999998875 999999987532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++.+++.+||+||+.+.... ++....++.++.|||||||||+|||||+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHc
Confidence 124699999999999999999999875321 2233334566899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .||++++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999987 5899999888874 555 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=344.93 Aligned_cols=196 Identities=26% Similarity=0.345 Sum_probs=168.3
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (697)
.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 4556766663 4569999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
..+.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+.
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 12469999999999989999999976421 233334456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999975 489999988876 47889999999999999999999877643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=344.56 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+.. ..+.+|+|+|+++++||++||+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 48999999998521 12459999999999999999999999999999999999999875 999999987642
Q ss_pred CCccEEEEcCcc-ccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 PYGSYGFVERET-TLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++.++|++|++ ..+...||+||+.+... +++.+..++.+..||||||||++|||||+.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 124699999997 36667899999987521 2334445667799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh---hhh
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH---FSN 315 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~---f~~ 315 (697)
|++|||||||+|||+.++..+++.|++++++ |+|||+++|+.. ++ ..||++++|++|+++..|+++++... +..
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 236 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQ 236 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHH
Confidence 9999999999999999999999999999865 999999888864 55 57999999999999999999876532 334
Q ss_pred cCCCCC
Q 005423 316 AGFPCP 321 (697)
Q Consensus 316 ~g~~~p 321 (697)
.|+++|
T Consensus 237 ~~~~~~ 242 (279)
T PRK13650 237 LGLDIP 242 (279)
T ss_pred cCCCCc
Confidence 455433
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=349.94 Aligned_cols=206 Identities=25% Similarity=0.293 Sum_probs=173.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|+++++...+|+|.++|+++...
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3689999999986321 234699999999999999999999999999999999999987522359999999875321
Q ss_pred ------CccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCCc---cccccCCCCCHHHHHH
Q 005423 181 ------YGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLPG---FFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~~---~~~~~~~~LSGGqrqR 229 (697)
.+.++||+|++ .+.+.+|+.+++.... .+++++ ..++.+++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 14699999997 6888899988875421 123332 1345789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|++||+||||+|||..++.+|+++|++++++ |.|+|+++|+. ..+.++||++++|++|++++.|++++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 89999987775 57888999999999999999999988
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+++
T Consensus 249 i~~ 251 (330)
T PRK09473 249 VFY 251 (330)
T ss_pred HHh
Confidence 754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=339.85 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999884 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------------------------------cCCCccccccCCCCCH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------------------------------LQLPGFFCQRKNGLPC 224 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------------------l~l~~~~~~~~~~LSG 224 (697)
+..++|++|++.+++.+||+||+.+... +++....++.+++|||
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAY 156 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCH
Confidence 2358999999999999999999986421 1122223455688999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999875 89999988876 578899999999999999999
Q ss_pred eCchhhH
Q 005423 304 GETLACL 310 (697)
Q Consensus 304 G~~~~~~ 310 (697)
|+++++.
T Consensus 236 ~~~~~~~ 242 (255)
T PRK11300 236 GTPEEIR 242 (255)
T ss_pred CCHHHHh
Confidence 9987754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=331.63 Aligned_cols=186 Identities=25% Similarity=0.340 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 678999998841 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||.||+.+... +++.+..++.+..|||||||||+|||||+.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 13469999999999988999999987521 123333445668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 155 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999987899999988886 57888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=349.31 Aligned_cols=203 Identities=21% Similarity=0.227 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccc-----cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 005423 105 SVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (697)
.++++||++.|..+.. ....+|+|||+++++||++||+|+||||||||+++|+|++++.+ |+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcCc
Confidence 5899999999963211 13579999999999999999999999999999999999998865 999999987532
Q ss_pred --------CCccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCC-ccccccCCCCCHHHHH
Q 005423 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLP-GFFCQRKNGLPCGERR 228 (697)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~-~~~~~~~~~LSGGqrq 228 (697)
.++.++||+|++ .+.+.+||.+++.... .++++ ...++++++|||||||
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 135699999997 5888899998885421 12343 2356778999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|++||+||||++||..++.+|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+++
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 89999977765 5788899999999999999999998
Q ss_pred hhHH
Q 005423 308 ACLQ 311 (697)
Q Consensus 308 ~~~~ 311 (697)
++++
T Consensus 241 ~~~~ 244 (327)
T PRK11308 241 QIFN 244 (327)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=337.18 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=170.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+..
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecccccccc
Confidence 478999999984 2469999999999999999999999999999999999998875 99999998642
Q ss_pred -----CCCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccccccCCCCCHHHHHHHHHH
Q 005423 179 -----MPYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 179 -----~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~~~~~~LSGGqrqRv~IA 233 (697)
..++.++|++|++.+++.+||.||+.+.. .+++....++.+.+||||||||++||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 01346999999999999999999996411 12334444566789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999999987799999988886 477789999999999999999987653
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=324.35 Aligned_cols=188 Identities=46% Similarity=0.732 Sum_probs=165.5
Q ss_pred ceEEEEeEEEEEeccc-ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC-
Q 005423 104 ASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~- 179 (697)
..++++|+++.|+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.. |+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchH
Confidence 3589999999985310 01256999999999999999999999999999999999999 7765 999999987642
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
.++.++|++|++.+++.+|++||+.+...+. .||||||||++|||||+.+|++|||||||+|||+.++.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHhc----------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 2457999999999998999999998765321 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
.+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 149 ~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 149 QVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999998779999999998865788899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=336.68 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=168.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~---- 179 (697)
++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68899999884 236999999999999999999999999999999999999875 0114999999987532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .|+.||+.+.... ++. ...++.+++|||||||||+|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 1356999999998888 9999999864321 222 23345678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999874 8999988876 4788899999999999999999987764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=339.06 Aligned_cols=197 Identities=25% Similarity=0.274 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccccccc
Confidence 489999999984 2469999999999999999999999999999999999998875 999999986531
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc-cccCCCCCHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF-CQRKNGLPCG 225 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~-~~~~~~LSGG 225 (697)
.++.++|++|++.+++.+||+||+.+.. .+++.... ++...+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 1246999999999999899999997632 11233222 4566899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987899999988876 57888999999999999999998
Q ss_pred chhhH
Q 005423 306 TLACL 310 (697)
Q Consensus 306 ~~~~~ 310 (697)
.++..
T Consensus 236 ~~~~~ 240 (257)
T PRK10619 236 PEQLF 240 (257)
T ss_pred HHHhh
Confidence 87754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=344.35 Aligned_cols=202 Identities=21% Similarity=0.274 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|.+.....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999985211112469999999999999999999999999999999999999876 999999987531
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++ .++ .+||.||+.+... +++. ...++.+++|||||||||+||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 124699999996 355 5799999976421 2343 334567789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.+
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987899999987775 57889999999999999999999887653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=337.92 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=167.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 68899999884 2469999999999999999999999999999999999998875 999999987644445689
Q ss_pred EEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 186 FVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
|++|++.+++.+||.||+.+... +++.+..++.+.+|||||||||+|||+|+.+|++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999988999999976421 12223334567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCch
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 307 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 307 (697)
|||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999964 589999988876 47889999999998 59999887654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=333.77 Aligned_cols=195 Identities=23% Similarity=0.346 Sum_probs=169.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999884 2469999999999999999999999999999999999999875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHcC-----------------CCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ-----------------LPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~-----------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
..+.++|++|++.+++.+|+.||+.+..... +....++..++||||||||++|||+|+.+|++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i 152 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL 152 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1246999999999999899999998653211 11223456688999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999874 89999988876 578889999999999999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=336.15 Aligned_cols=197 Identities=24% Similarity=0.434 Sum_probs=170.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||.||+.+.... ++....++..+.|||||||||+|||+|+.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 134699999999999889999999764321 11222234558899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999988899999988876 4788999999999999999999987754
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=323.73 Aligned_cols=186 Identities=41% Similarity=0.671 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-~~ 181 (697)
.++++|+++.|+..+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +|+|.++|++... .+
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHhh
Confidence 589999999985311 12469999999999999999999999999999999999863 44 4999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++|++.+++.+|++||+.+...++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~ 148 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALLR----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHHh----------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH
Confidence 56999999999998899999999865432 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEEEEe
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 304 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv~~G 304 (697)
+.|++++++|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 149 ~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999877999999999875456789999999998 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=330.53 Aligned_cols=187 Identities=26% Similarity=0.328 Sum_probs=161.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.++..
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 367899998842 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+|++||+.+... +++....++.+.+||||||||++|||||+.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 12469999999999999999999976532 122233345668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999987799999988886 577789999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=330.39 Aligned_cols=198 Identities=26% Similarity=0.321 Sum_probs=174.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++.+||++.+ +...+++|||+++++||+++|+||||||||||+|+|+|.++|++ |+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHHH
Confidence 47899999988 45689999999999999999999999999999999999999987 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------------------CCCccccccCCCCCHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-------------------------------QLPGFFCQRKNGLPCGER 227 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------------------~l~~~~~~~~~~LSGGqr 227 (697)
+..++--+|...+|+++||.||+..+... ++.+..++...+||+|||
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 24578889999999999999999876432 223333444578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||+.|||||+++|++|+||||.+||.+....++.+.|+++++ .|.||+++- |+...++.+||||+||+.|+++++|+|
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIE-HdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE-HDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEE-eccHHHhhhccEEEeccCCcCcccCCH
Confidence 999999999999999999999999999999999999999997 568998855 556799999999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
+++.+
T Consensus 235 ~eV~~ 239 (250)
T COG0411 235 EEVRN 239 (250)
T ss_pred HHHhc
Confidence 99864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=339.17 Aligned_cols=204 Identities=25% Similarity=0.320 Sum_probs=171.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~-~~~~~G~I~i~G~~~~----- 178 (697)
++++||++.|.... +..++++||||++++||++||+|+|||||||+.++|+|++| + ....+|+|.++|++..
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 68899999996532 24679999999999999999999999999999999999998 4 3346689999998631
Q ss_pred ----CCCccEEEEcCcc--ccCCCCCHHHHHHHHH---------------------HcCCCc---cccccCCCCCHHHHH
Q 005423 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSA---------------------LLQLPG---FFCQRKNGLPCGERR 228 (697)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~---------------------~l~l~~---~~~~~~~~LSGGqrq 228 (697)
...+.+++++|++ .|.|.+||.+-+.-.. .+++++ ..+.+|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1235799999996 5777788765553221 123333 346788999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++||+ ...+.++||||+||..|++|+.|+++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHD-l~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD-LGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999999999999999999999999999999999996 68999996665 56899999999999999999999999
Q ss_pred hhHH
Q 005423 308 ACLQ 311 (697)
Q Consensus 308 ~~~~ 311 (697)
+++.
T Consensus 240 ~i~~ 243 (316)
T COG0444 240 EIFK 243 (316)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=332.41 Aligned_cols=196 Identities=28% Similarity=0.393 Sum_probs=168.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999884 2469999999999999999999999999999999999998875 999999986532 12
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+|++||+.+... +++....++.+..||||||||++|||||+.+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999988888999999976432 1222333456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++..+.+.|+++++ +|.|+|+++|++. ++. .||++++|++|++++.|+++++.+
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999985 5899999888874 554 499999999999999998877654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=334.85 Aligned_cols=196 Identities=23% Similarity=0.310 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 378999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH---------------------------cCCCccccccCCCCCHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL---------------------------LQLPGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------------l~l~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++.+||+||+.+... +++....++..+.|||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 12359999999999999999999976421 12222334556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999976 68999988876 5788899999999999999999877653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=340.57 Aligned_cols=202 Identities=24% Similarity=0.330 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|++.....+++|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccccccc
Confidence 478999999985321112469999999999999999999999999999999999998875 999999987532
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++ .+++ .||+||+.+... +++. ...++...+|||||||||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 124699999996 4554 699999976421 2232 223556789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987789999988886 47888999999999999999999887643
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=330.74 Aligned_cols=196 Identities=26% Similarity=0.294 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985311 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.+.++|++|++.+++.+||+||+.+... +++.+..++.+.+||||||||++|||+|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1469999999999999999999976421 2233334556789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+.+|+||||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.. +|++++|++|++++.|+.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999975 5899999888874 5554 589999999999988864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=336.35 Aligned_cols=196 Identities=26% Similarity=0.339 Sum_probs=169.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.++..
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 46899999884 2469999999999999999999999999999999999998875 999999986521
Q ss_pred ------------CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHH
Q 005423 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGER 227 (697)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqr 227 (697)
.++.++|++|++.+++..|+.||+.+... +++.+..++.+.+||||||
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 13469999999999999999999976421 1223334456689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 89999988886 478889999999999999999988
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 232 ~~~~ 235 (252)
T TIGR03005 232 DEIF 235 (252)
T ss_pred HHHh
Confidence 7654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=330.02 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=168.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 46889999874 2469999999999999999999999999999999999998875 9999999865322 2479
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
+|++|++.+++.+|++||+.+... +++.+..++.+..||||||||++|||||+.+|++|+|||||
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 999999999988999999976432 22333345566899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 250 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++.+
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999987889999988887 47888999999999999999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=341.36 Aligned_cols=209 Identities=23% Similarity=0.353 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 5899999999842 2469999999999999999999999999999999999999875 999999987631
Q ss_pred --CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 --PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++. .+...||+||+.+... +++.+..++..+.||||||||++|||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1246999999973 2335799999976421 22333445677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH---hh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ---HF 313 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~---~f 313 (697)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. +++.++||++++|++|++++.|++++..+ .+
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 236 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHH
Confidence 999999999999999999999999999999865 89999988876 46778999999999999999999988754 22
Q ss_pred hhcCCCCC
Q 005423 314 SNAGFPCP 321 (697)
Q Consensus 314 ~~~g~~~p 321 (697)
...+.++|
T Consensus 237 ~~~~~~~~ 244 (283)
T PRK13636 237 RKVNLRLP 244 (283)
T ss_pred HHcCCCCC
Confidence 33455544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=383.98 Aligned_cols=202 Identities=27% Similarity=0.329 Sum_probs=177.6
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||++.+.+ +.+.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 36999999999842 23579999999999999999999999999999999999999876 999999987642
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.+||++|++.+++.+||+|++.+.+.+ ++.+..++.+++|||||||||+||+||+.+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 235699999999999999999999875432 2333345567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
+||||||||+|||+.++..+.++|++++ +|+|||+++|+. +++..+||||++|++|+++..|+++++.+.|
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999999999995 689999988876 5888899999999999999999999887655
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=328.94 Aligned_cols=188 Identities=28% Similarity=0.430 Sum_probs=162.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (697)
++++|+++.+. .+.+|+|+|+++++| +++|+||||||||||+++|+|+++|.+ |+|.++|.+.... +
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 46889999884 236999999999999 999999999999999999999998875 9999999765321 3
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||.||+.+... +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999976421 1233334556789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999986 58999987776 5777899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=329.54 Aligned_cols=188 Identities=24% Similarity=0.327 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 688999998842 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++..|++||+.+... +++.+..++.++.||||||||++|||||+.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN 154 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc
Confidence 13469999999988888999999977431 122333455678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++..+||++++|++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 155 KPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999987789999988876 4788899999999999975
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=329.74 Aligned_cols=194 Identities=29% Similarity=0.363 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|.++. ....+|+|+|+++++||+++|+|||||||||||++|+|+++|.. |+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 67899999885211 11369999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCcc--ccCCCCCHHHHHHHHHH---------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 --PYGSYGFVERET--TLIGSLTVREYLYYSAL---------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~---------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++ .+++.+||+||+.+... +++. ...++.+..|||||||||+||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 134699999998 46678999999865321 1222 123456688999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999865 89999988886 4777899999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=346.65 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (697)
.++++||++.|..++ ....+|+||||++++||++||+|+||||||||+++|+|++++.+ ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 22469999999999999999999999999999999999987422 2369999999875321
Q ss_pred ------CccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCCc---cccccCCCCCHHHHHH
Q 005423 181 ------YGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLPG---FFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~~---~~~~~~~~LSGGqrqR 229 (697)
.+.++||+|++ .+.+.+||.+++.... .+++++ ..++++++||||||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 13699999997 4788899887664321 123432 2356789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|+|||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|++++.|++++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999986 589999988875 47888999999999999999999988
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+++
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=337.46 Aligned_cols=199 Identities=27% Similarity=0.427 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+...+|+|.++|.+...
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 589999999884 3469999999999999999999999999999999999998753245999999986531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHH---------------------------cCCCccccccCCCCCHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSAL---------------------------LQLPGFFCQRKNGLPCGER 227 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------------l~l~~~~~~~~~~LSGGqr 227 (697)
.++.++|++|++.+++.+||.||+.+... +++....++.+.+||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence 02468999999999998999999975421 1222333556689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+|||||+.+|+||||||||+|||..++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~ 237 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSS 237 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999985 489999988886 467899999999999999999988
Q ss_pred hhh
Q 005423 307 LAC 309 (697)
Q Consensus 307 ~~~ 309 (697)
++.
T Consensus 238 ~~~ 240 (262)
T PRK09984 238 QQF 240 (262)
T ss_pred HHh
Confidence 763
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=328.33 Aligned_cols=190 Identities=26% Similarity=0.368 Sum_probs=161.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+....
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985321 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.+.++|++|++.+++.+||+||+.+... +++....++.++.|||||||||+|||+|+
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1469999999999988999999976421 12333345667899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++ +.+|++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999986 4899999888874 55 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=322.21 Aligned_cols=198 Identities=25% Similarity=0.426 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (697)
.+..+||.++|+ +++++++||+.+++||+++|+|||||||||.+.++.|+.+|++ |+|.+||.++.. +
T Consensus 4 ~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHH
Confidence 588899998884 5689999999999999999999999999999999999999987 999999988643 1
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHcC---------------------CCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ---------------------LPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~---------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
+..+||+||++..|..+||+||+......+ +.+..+.+...||||||+|+.|||||+
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 246899999999999999999997543222 222233445789999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-| .-.|...+|||..++++|+++++|+++++.+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDH-NVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDH-NVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccc-cHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999999999655 4568899999999999999999999999865
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=327.55 Aligned_cols=186 Identities=28% Similarity=0.372 Sum_probs=161.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+. .+.+|+++|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987531
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+|+.||+.+... +++....++.+++||||||||++|||||+.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 13569999999999988999999976421 123333456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988889999988876 578889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=336.21 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 478999999884 2469999999999999999999999999999999999998875 999999986432
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.++|++|+..+++.+|+.||+.+... +++....++.+..|||||||||+|||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 12469999999988888899999976310 1222233556689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999987799999988886 4788999999999999999999887653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=338.98 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 4899999999842 13469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCcc-ccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERET-TLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++ .++...||.||+.+... +++.....+.+..|||||||||+|||+|+.+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 34699999997 35667899999976421 2344445567789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999875 899999888875 555 599999999999999999887653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=331.98 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (697)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTS---GTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc---ceEEECCEecCCCCHH
Confidence 46899999984 246999999999999999999999999999999999995 5554 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCCc-cccccCC-CCCHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLPG-FFCQRKN-GLPCGERRR 229 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~~-~~~~~~~-~LSGGqrqR 229 (697)
.+..++|++|++.+++.+|+.|++.+... ++++. ..++... +||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 12348999999999999999999865321 11221 1233444 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+... ||++++|++|++++.|++++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999988889999988887 467777 89999999999999999875
Q ss_pred hH
Q 005423 309 CL 310 (697)
Q Consensus 309 ~~ 310 (697)
+.
T Consensus 232 ~~ 233 (243)
T TIGR01978 232 AK 233 (243)
T ss_pred hc
Confidence 43
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=337.12 Aligned_cols=197 Identities=27% Similarity=0.420 Sum_probs=170.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
+.++|+++.+.+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 679999999842 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 -PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 -~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..+.++|++|++ .++ ..||.||+.+... +++.+..++.+++||||||||++|||+|+
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 124699999996 344 4699999976421 23344455677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999987799999988876 57888999999999999999999988753
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=329.05 Aligned_cols=196 Identities=36% Similarity=0.568 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~---~~~~~~G~I~i~G~~~~~-- 179 (697)
.+.|+|+++.+++.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.. |+|.++|++...
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~---G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS---GQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCc---eEEEECCEECChHH
Confidence 367999999986421 13679999999999999999999999999999999999998 654 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHcCC-----------------------CccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQL-----------------------PGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l-----------------------~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++.+||+||+.+...... ....++..+.|||||||||+|||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 24579999999999999999999987532211 1112234578999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998778999999998755788999999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=337.65 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 11 ~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 11 TFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSKA 82 (265)
T ss_pred eEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHHH
Confidence 589999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|+..+++.+||.||+.+... +++.+..++.+++|||||||||+|||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 12469999999888888999999976311 1222223456689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 9999999999999999999999999999999864 89999988886 4788999999999999999999887653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=334.73 Aligned_cols=197 Identities=27% Similarity=0.372 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 378999999884 2469999999999999999999999999999999999998875 999999986532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh---
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV--- 237 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--- 237 (697)
..+.++|++|++.+++.+||+||+.+... +++.+..++.+.+|||||||||+|||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 12468999999988788999999976421 12233335567899999999999999999
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 ---MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ---~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|++|||||||+|||+.++..+.+.|++++ ++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 5999999999999999999999999999998 6789999988876 5788899999999999999999887654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=332.14 Aligned_cols=196 Identities=23% Similarity=0.386 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChHH
Confidence 488999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH---------------HcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA---------------LLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++.++|++|++.+++ .||+||+.+.. .++++ +..++.+..||||||||++|||||+.+|++|
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1356999999998886 69999987532 12343 2345677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|+. .++.++||++++|++|+++..|+++++.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999986 489999988876 4788899999999999999999988764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=330.28 Aligned_cols=187 Identities=29% Similarity=0.435 Sum_probs=157.6
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEE
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv 187 (697)
++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 578888874 2469999999999999999999999999999999999998875 99999998653334579999
Q ss_pred cCccccC--CCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 188 ERETTLI--GSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 188 ~Q~~~l~--~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+|++.+. ..+||+||+.+... +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9998763 23799999976421 1122223456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999987889999988876 4788899999999876 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=352.84 Aligned_cols=184 Identities=27% Similarity=0.370 Sum_probs=163.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CccEEEEcCccccC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETTLI 194 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~l~ 194 (697)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|+++... ++.++|++|+..++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 58999999999999999999999999999999999999876 9999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005423 195 GSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 255 (697)
Q Consensus 195 ~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 255 (697)
+.+||+||+.+... +++.+..++.+++|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 99999999987532 23344456677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 256 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 256 ~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++..+.+.|+++++ .|+|||+++|+. .++.++||++++|++|+++..|+++++..
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999975 589999988875 57889999999999999999999887643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=367.15 Aligned_cols=199 Identities=24% Similarity=0.386 Sum_probs=172.6
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++|+||+|.|+.. ...++|+|+||+++|||++||+||||+||||+.++|..++.|++ |+|.+||.++..
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINHK 538 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCHH
Confidence 369999999999853 45689999999999999999999999999999999999999986 999999998754
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.||+|.|||.||.. ||+|||.|+.. .++|+.+ .++..+||||||||+||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 24689999999999965 99999988521 1234332 3455689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||++||+||||||.||+||+++...|-+.|.++.++ +|||++.|..+ ..+.+|+|+|+++|++++.|+-+|.++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999999999998854 89998677653 347899999999999999998888764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=337.29 Aligned_cols=199 Identities=28% Similarity=0.386 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|.+ .+.+|+|||+++++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++. .+...||.||+.+... +++....++.++.||||||||++|||||+.+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~ 155 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAME 155 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246899999963 2335799999976432 1233345667799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+.||++++|++|++++.|++++..+
T Consensus 156 p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999999999875 89999988886 47888999999999999999999988753
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=326.77 Aligned_cols=185 Identities=29% Similarity=0.414 Sum_probs=157.6
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~ 182 (697)
++|+++.+.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.... ++
T Consensus 2 ~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHHh
Confidence 57888887421 1469999999999999999999999999999999999998875 9999999875321 24
Q ss_pred cEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 183 SYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 183 ~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
.++|++|++. .++.+|++||+.+... +++....++.+..|||||||||+|||||+.+|++
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 6899999974 3567899999976421 1233334567789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999987799999988876 57888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=337.81 Aligned_cols=196 Identities=25% Similarity=0.318 Sum_probs=168.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|++ .+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 678999998842 2459999999999999999999999999999999999998875 9999999875321
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++. .+...|+.||+.+... +++....++.++.|||||||||+|||||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTME 154 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246999999975 3556899999976432 1233334566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|+||||||||+|||+.++..+.+.|++++++|+|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 155 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 155 PECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999888999999888875 56 569999999999999999988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=338.37 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 67899999884 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCccEEEEcCcccc-CCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTL-IGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.. +...|+.||+.+... +++.+..++.+..||||||||++|||+|+.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 12469999999752 334589999876421 123333455678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999987789999988876 5788899999999999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=333.19 Aligned_cols=198 Identities=21% Similarity=0.285 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|.. ..+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 589999999984 2469999999999999999999999999999999999988631 125999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ +||+||+.+.... ++ .+..++.+++|||||||||+
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 1346999999988884 8999999875321 11 11234556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 78999988876 4778899999999999999999988764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=333.50 Aligned_cols=199 Identities=26% Similarity=0.332 Sum_probs=169.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSE---M 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~---~ 179 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ ...+|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999984 246999999999999999999999999999999999998873 013599999998753 1
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++.+||.||+.+.... ++. ...++.+.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 124699999999999999999999864321 111 112345688999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999975 68999988876 4788899999999999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=333.57 Aligned_cols=199 Identities=20% Similarity=0.312 Sum_probs=167.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 3689999999884 2469999999999999999999999999999999999987510 124999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ +|++||+.+.... ++ ....++....|||||||||+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 1346999999998887 8999999875311 11 11134556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999975 78999988876 4778899999999999999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=335.70 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEeccc----ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++||++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 378999999985310 113579999999999999999999999999999999999998875 999999987532
Q ss_pred -------CCccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++ .+++.+||+||+.+.. .+++. ...++...+||||||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 124699999996 4667889999985432 12232 22345678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.++||++++|++|++++.|++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 89999988876 57788999999999999999999887
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+..
T Consensus 238 ~~~ 240 (265)
T TIGR02769 238 LLS 240 (265)
T ss_pred HcC
Confidence 653
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=332.17 Aligned_cols=199 Identities=21% Similarity=0.290 Sum_probs=166.6
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (697)
+.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999864 110134999999987532
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCc----cccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPG----FFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~----~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .||+||+.+.... ++.. ..++.++.|||||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 1346999999998887 5999999875321 1111 12445689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999964 78999988876 4788899999999999999999887653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=348.33 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=169.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
+.+ ||+++|.+ + .+ |+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 455 88888742 2 23 8999999999999999999999999999999998875 999999987421
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++.++|++|+..+++.+||+||+.+.. .+++.+..++.+++|||||||||+|||||+.+|++|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 1357999999999999999999998642 234555567788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|+++..|+++++..
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999865 89999988876 57889999999999999999999988754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=344.48 Aligned_cols=205 Identities=20% Similarity=0.180 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~~~--- 180 (697)
.++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 2356999999999999999999999999999999999998742 12359999999875321
Q ss_pred ------CccEEEEcCccc--cCCCCCHHHHHHHHH-------------------------HcCCCc---cccccCCCCCH
Q 005423 181 ------YGSYGFVERETT--LIGSLTVREYLYYSA-------------------------LLQLPG---FFCQRKNGLPC 224 (697)
Q Consensus 181 ------~~~~~yv~Q~~~--l~~~lTV~e~l~~~~-------------------------~l~l~~---~~~~~~~~LSG 224 (697)
.+.++||+|++. +.+.+||.+++.... .+++.+ ..++.+++|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 236999999975 677889998885421 112321 13466789999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
||||||+|||||+.+|+||||||||+|||+.++.+++++|++++++ |.|||+++|+. ..+.++||+|++|++|++++.
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999874 89999977765 678899999999999999999
Q ss_pred eCchhhHH
Q 005423 304 GETLACLQ 311 (697)
Q Consensus 304 G~~~~~~~ 311 (697)
|+++++++
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 99887753
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=314.95 Aligned_cols=169 Identities=29% Similarity=0.432 Sum_probs=152.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYGK-----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEECC-----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 368899998842 369999999999999999999999999999999999998875 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++|++.+++..|+.||+. ||||||||++|||||+.+|++|+|||||+|||+.++..+.
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 135 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 57999999999998899999985 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+.|++++++|.|+|+++|++ .++.+.||++++|++|++
T Consensus 136 ~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 136 ELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999987789999988876 478889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=376.37 Aligned_cols=199 Identities=23% Similarity=0.377 Sum_probs=172.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|++|.|.. ....+|+|+|++++|||.+||+|+||||||||+|+|+|+++|.. |+|.+||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 36999999999963 22379999999999999999999999999999999999999976 999999998542
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.+|||+||+.+|. .|++||+.++. ..++|..+ .+...+||||||||++|||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 3578999999999995 59999997642 12233322 3455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
||+++|+||+||||||+||+.+++.|.+.|.++. .|+|+|+++|.++ ..+.||||+||++|++++.|+.++.++.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999999987 4688888899874 5689999999999999999999998763
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=334.54 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=171.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..+.++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++++. |+|.++|++....
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 3689999999985 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-----------------------HcCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-----------------------LLQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-----------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.+.++|++|++.+++..|++||+.+.. .+++.+..++.+..||||||||++||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHH
Confidence 246999999999988899999997531 0122223456678999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999986 489999988876 4788999999999999999999987764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=315.14 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=168.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (697)
++.+|+++++. .+.+|++||++++|||++||+||||||||||||+|+|.+.|++ |++.+||.+.....
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 67899999985 4579999999999999999999999999999999999998876 99999998764321
Q ss_pred -ccEEEEcCccccCCCCCHHHHHHHHHHcC---------------------CCccccccCCCCCHHHHHHHHHHHHHhh-
Q 005423 182 -GSYGFVERETTLIGSLTVREYLYYSALLQ---------------------LPGFFCQRKNGLPCGERRRVRIARELVM- 238 (697)
Q Consensus 182 -~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~---------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~- 238 (697)
+.-+.++|+..+-...||.|.+.++..-. +.+...+....|||||||||.+||.|++
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 34688899987765679999998875322 1122234447899999999999999976
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 -----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 -----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++++|+||||||+||...+..++++.++++++|..|+++.|+. .....+||||++|++||++..|+++++++
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 4569999999999999999999999999999999999977765 57888999999999999999999999874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=333.23 Aligned_cols=209 Identities=21% Similarity=0.284 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+....
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 5899999999852 12459999999999999999999999999999999999998875 9999999875321
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++. +++..|+.+|+.+... +++.+..++.+++||||||||++|||||+.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 346999999974 6777899999876421 1233334566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH---hhhh
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ---HFSN 315 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~---~f~~ 315 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|+++++.+ .+..
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 238 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTR 238 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHh
Confidence 9999999999999999999999999999864 899999999875 5654 99999999999999999887643 3333
Q ss_pred cCCCCC
Q 005423 316 AGFPCP 321 (697)
Q Consensus 316 ~g~~~p 321 (697)
.|.++|
T Consensus 239 ~~~~~~ 244 (269)
T PRK13648 239 IGLDLP 244 (269)
T ss_pred cCCCCC
Confidence 455544
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=320.71 Aligned_cols=188 Identities=24% Similarity=0.321 Sum_probs=161.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~--- 180 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+. +|.. |+|.++|++....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~---G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE---GEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCc---cEEEECCEECCcCCHH
Confidence 46889999884 246999999999999999999999999999999999994 5654 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+..++|++|++.+++..++++++. .....||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~------------~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 140 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR------------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh------------hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 234999999999999899998871 22358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecChHHHHh-ccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 258 LLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 258 ~~i~~~L~~l~~~g~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
..+.+.|++++++|+|||+++|++. .+.+ +||++++|++|++++.|+. ++.+.+.+
T Consensus 141 ~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~ 197 (200)
T cd03217 141 RLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEIEK 197 (200)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhhcc
Confidence 9999999999877899999888874 6666 7999999999999999944 45555543
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=356.40 Aligned_cols=207 Identities=27% Similarity=0.327 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE----- 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~----- 178 (697)
.++++||+++|... .....+++||||++++||++||+|+|||||||++++|.|++|+. ...+|+|.++|++..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 68999999999754 23357999999999999999999999999999999999999986 345799999998531
Q ss_pred ----CCCccEEEEcCcc--ccCCCCCHHHHHHHH--------------------HHcCCCcccc--ccCCCCCHHHHHHH
Q 005423 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYS--------------------ALLQLPGFFC--QRKNGLPCGERRRV 230 (697)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~--------------------~~l~l~~~~~--~~~~~LSGGqrqRv 230 (697)
...+.++|++|++ .+-|..||.+-+.-. ...++++... +++++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 1225799999996 455667776655321 1345655444 48999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
.||+||+.+|++||+||||++||+.++.+|+++|+++. +.|+++|+++|++ ..+.++||||+||.+|++|+.|+++++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i 242 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEI 242 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998 5689999977765 689999999999999999999999999
Q ss_pred HHhh
Q 005423 310 LQHF 313 (697)
Q Consensus 310 ~~~f 313 (697)
++.+
T Consensus 243 ~~~p 246 (539)
T COG1123 243 LSNP 246 (539)
T ss_pred Hhcc
Confidence 8654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=338.93 Aligned_cols=201 Identities=19% Similarity=0.319 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+++......+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. |+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999985321112359999999999999999999999999999999999998875 999999986421
Q ss_pred -----CCccEEEEcCccc--cCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++. +++ .||+||+.+... ++++ +..++....|||||||||+|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 1346999999963 443 599999976431 1232 23456678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999986 489999988876 4788999999999999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=332.91 Aligned_cols=196 Identities=29% Similarity=0.428 Sum_probs=168.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 67899999884 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.++|++|++.+++.+||.||+.+... +++.+..++.+..||||||||++|||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 2468999999877778899999976310 11222234556899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 99999999999999999999999999999987789999988886 4788999999999999999999887653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=324.03 Aligned_cols=188 Identities=30% Similarity=0.376 Sum_probs=160.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
+.++|+++.+.+ +. .|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+... .++
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 368899998842 12 39999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+||+||+.+... +++.+..++.+.+||||||||++|||||+.+|++|
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ll 150 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999998999999976421 12222334566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 151 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999985 489999988876 5788899999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=348.39 Aligned_cols=185 Identities=26% Similarity=0.356 Sum_probs=162.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CCccEEEEc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEM---------PYGSYGFVE 188 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~----~~~---------~~~~~~yv~ 188 (697)
...+|+|+||++++||+++|+|+||||||||+|+|+|+++|+. |+|.++|++ ... .++.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999999999999999999876 999999962 211 124699999
Q ss_pred CccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 189 RETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 189 Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
|+..+++.+||+||+.++.. +++.+..++.+.+|||||||||+|||||+.+|+||||||||
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999999999999987532 23333445677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 250 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+.++.++.+.|++++++ |+|||+++|+. .++.++||++++|++|+++..|+++++.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999864 89999988875 5788999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=329.66 Aligned_cols=199 Identities=27% Similarity=0.340 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 488999999884 246999999999999999999999999999999999998742 1135999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++.+||.||+.+.... ++. ...++.+.+|||||||||+|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 135699999999888889999999764321 111 12345568999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999965 78999988876 4778899999999999999999988764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=326.32 Aligned_cols=195 Identities=25% Similarity=0.327 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++||++.|.. + ..|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 689999999842 1 238999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++....++.++.||||||||++|||+|+.+|++|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999998999999976321 12222345567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++..+.+.|+++++ .|+|+|+++|++ .++.++||++++|++|++++.|+.+++.+
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999975 489999988886 47788999999999999999998876643
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=335.75 Aligned_cols=202 Identities=20% Similarity=0.299 Sum_probs=172.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+++. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|....+|+|.++|.+....
T Consensus 5 ~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 58999999998521 24699999999999999999999999999999999999987642348999999876421
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++. .++..||.||+.+... +++.+..++.++.||||||||++|||||+.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246999999974 5667899999976421 2333445667799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+.. ++ ..||++++|++|++++.|+++++.+
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999864 899999998875 55 5799999999999999999988754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=325.81 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=171.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
+.++|+++.+. .+.+++|+|+++++||+++|+|+||||||||+++|+|.++|.. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36889999884 2469999999999999999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++.+..++.+..||||||||++|||+|+.+|+++
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll 152 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999988999999976421 23444455677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 153 llDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999999999864 89999988886 4688999999999999999999876654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=335.01 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccc-cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
.++++|+++.|++... ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999963211 13569999999999999999999999999999999999999875 999999987532
Q ss_pred --CCccEEEEcCccc--cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETT--LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 --~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++. ++ ..||.||+.+... +++....++.+++|||||||||+|||+|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1356999999974 44 4689999977532 2333445567799999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.. ||++++|++|++++.|+++++..
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999976 4999999888875 5555 99999999999999999988754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=330.48 Aligned_cols=204 Identities=25% Similarity=0.335 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEEecc-------------------cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 005423 104 ASVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~ 164 (697)
..++++|+.+-+..+ +.+...-++|+|++++.||+..|||-||||||||+|+|.++++|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 357889998877432 0122346899999999999999999999999999999999999986
Q ss_pred CceeEEEECCEeCC---------CCCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCcccc
Q 005423 165 RMYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFC 216 (697)
Q Consensus 165 ~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~ 216 (697)
|+|+++|+++. ..++.++.|+|...|+|+.||.||..|+. ..+|.++.+
T Consensus 83 ---G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 ---GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred ---ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 99999998752 13467999999999999999999998863 235666778
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEE
Q 005423 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
+++++|||||||||.|||||+.+|+||++|||+|+|||--+.++.+.|.+|++ .++||++++|+ .+|++++.|||.+|
T Consensus 160 ~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD-LdEAlriG~rIaim 238 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIM 238 (386)
T ss_pred cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC-HHHHHhccceEEEe
Confidence 89999999999999999999999999999999999999999999999999984 58999996665 57999999999999
Q ss_pred eCCeEEEEeCchhhHH
Q 005423 296 SNGNTLFFGETLACLQ 311 (697)
Q Consensus 296 ~~G~iv~~G~~~~~~~ 311 (697)
++|+||..|+++|++.
T Consensus 239 kdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 239 KDGEIVQVGTPEEILL 254 (386)
T ss_pred cCCeEEEeCCHHHHHc
Confidence 9999999999999874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=321.95 Aligned_cols=189 Identities=25% Similarity=0.369 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.+. ..++|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++... .++
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 36889999874 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++.+..++.++.||||||||++|||+|+.+|+++
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 150 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPIL 150 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988999999975421 12222334566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 151 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 151 LLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999864 89999988876 47788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=332.84 Aligned_cols=199 Identities=20% Similarity=0.297 Sum_probs=169.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 35899999998842 13469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++. .++.+||+||+.+... +++.+..++.+..||||||||++|||||+.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1356999999973 5667899999976421 123333456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999866 589999899875 45 479999999999999999987764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=332.11 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEeccc----ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++||+++|..+. ...+++|+|+|+++++||+++|+|||||||||||++|+|+++|.+ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 489999999985211 112469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCccEEEEcCccc--cCCCCCHHHHHHHHHH--------------------cCC-CccccccCCCCCHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSAL--------------------LQL-PGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~--------------------l~l-~~~~~~~~~~LSGGqrqRv~I 232 (697)
..+.++|++|++. +++.+|+.+++.+... +++ +...++.+.+|||||||||+|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 1246999999874 5677899988865322 122 122344568999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999864 89999988876 5788899999999999999999887654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=323.35 Aligned_cols=193 Identities=29% Similarity=0.286 Sum_probs=163.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+..++ ....+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 589999999885311 11359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.+.++|++|++.+++.+||.||+.+... +++.+..++.+..||||||||++|||+|
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 2469999999999998999999976421 1233334456789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++.
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999764 899999888875 55 45999999999998753
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=325.18 Aligned_cols=195 Identities=28% Similarity=0.443 Sum_probs=169.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... .++
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 36789998874 1 38999999999999999999999999999999999999876 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++.+..++.++.|||||||||+|||||+.+|+++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 151 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL 151 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999989999999976431 22333345667899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 152 llDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 152 LLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999764 89999988886 4788899999999999999999877654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=345.32 Aligned_cols=191 Identities=28% Similarity=0.409 Sum_probs=165.8
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (697)
||++.|.+ +. + |+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~~-----~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGD-----FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECC-----EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 67777731 23 4 9999999999999999999999999999999999875 999999987521 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+.+|++|
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3569999999999999999999987532 23344456677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|+++..|+++++..
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999865 89999988876 57888999999999999999999888754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=325.83 Aligned_cols=196 Identities=31% Similarity=0.437 Sum_probs=170.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|++++.. |+|.++|.+... .++
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++..|+.||+.+.... ++....++....|||||+||++|||+|+.+|+++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll 152 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVL 152 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 699999999999889999999765321 2222234556889999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 153 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999875 89999988887 4778999999999999999999987764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=330.04 Aligned_cols=199 Identities=23% Similarity=0.326 Sum_probs=167.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3589999999984 2369999999999999999999999999999999999986 211134999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++...+||||||||+
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 1356999999998887 7999999764321 111 113455689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999964 78999988876 4778899999999999999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=353.37 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=170.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
+..+..+|+++.+++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+..+
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 445667799999863 3489999999999999999999999999999999999999876 999999987543
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------c----CCCccccccCCCCCHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------L----QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l----~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.+++++||+|++.+++. |++||+.++.. . ++.....+..++|||||+|||++||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 35789999999999975 99999977421 1 1112233455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+++++++||||++||.++++.|++.|.+++++ +|+++++|++ ....-+|+|++|++|++++.|..+++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999999999999999999999999965 8888888886 3556799999999999999999988754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=326.78 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 368899999984 2469999999999999999999999999999999999975311134999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH---------------------cCCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL---------------------LQLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------l~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++|++|++.+++ .||+||+.+... +++.. ..++....|||||||||+|||
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHH
Confidence 1346999999998887 699999976421 11211 123456789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|+. .++.+.||++++|++|++++.|++++..
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999975 88999988876 5788899999999999999999988754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=326.49 Aligned_cols=199 Identities=23% Similarity=0.325 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 2469999999999999999999999999999999999985 321134999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|+..+++.+|++||+.+.... ++. +..++....||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 158 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC 158 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence 135699999999999989999999763211 111 1123456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 159 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 159 IARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999976 58999988876 4788999999999999999999987764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=329.13 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 3589999999884 2469999999999999999999999999999999999986 321135999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++. ||+||+.+.... ++. +..++...+||||||||+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 13469999999988875 999999764321 111 112345678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999975 78999988886 4788899999999999999999988764
Q ss_pred H
Q 005423 311 Q 311 (697)
Q Consensus 311 ~ 311 (697)
+
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 3
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=327.99 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 588999999984 2469999999999999999999999999999999999987631 125999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc-C-------------------C----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL-Q-------------------L----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-~-------------------l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++.+|+.||+.+.... + + ....++..+.||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 134699999999999989999999764311 0 0 11224456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999974 68999988876 47888999999999999999999887643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=361.79 Aligned_cols=199 Identities=26% Similarity=0.432 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||.|+|+.+ ...++|+|+|+.+++|+++||+|||||||||++++|.+++.|+. |+|.+||.+++.
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNLK 423 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcchH
Confidence 469999999999853 35689999999999999999999999999999999999999986 999999988643
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.+.++|.|.|+|.+|. .|++||+.|+. ...+|... .++..+||||||||+||||
T Consensus 424 ~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence 2468999999999985 69999998853 11233322 2344569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..|.+.|.+.. +|+|.|++.|..+ .+.. +|+|++|++|+||+.|+.+|++.
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998876 5667777688764 6655 99999999999999999999875
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=312.64 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=152.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+. .+.+++|+|+++++||+++|+||||||||||+|+|+|++++++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
.++.++|++|++.+++.+|++||+.+. ||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~---------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~ 137 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG---------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec---------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 135699999999988889999998653 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 259 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 259 ~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
.+.+.|++++++ |+|+|+++|++ .++.++||++++|++|+
T Consensus 138 ~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 138 EVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999877 89999988876 57778999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=312.94 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+ +|+++|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 48899998864 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 255 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 255 (697)
++.++|++|+. .+++.+|++||+.+... ||||||||++|||||+.+|++|||||||+|||+.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 34699999984 57888999999987532 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 256 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 256 ~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++
T Consensus 139 ~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 139 AKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999987789999988876 578899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=327.10 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 4 KMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred EEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 589999999884 246999999999999999999999999999999999998641 0135999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc-C-------------------C----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL-Q-------------------L----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-~-------------------l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .|++||+.+.... + + ....++...+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 1346999999998887 8999999865321 1 1 01124556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999976 58999988876 5788999999999999999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=326.22 Aligned_cols=198 Identities=20% Similarity=0.290 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~~-- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+ .++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 588999999884 24699999999999999999999999999999999997 3442 124999999987532
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCc----cccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPG----FFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~----~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .|+.||+.+... +++.. ..++.+..||||||||+
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH
Confidence 1346999999998887 599999976421 11211 12455679999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999996 478999988876 4788999999999999999999998875
Q ss_pred H
Q 005423 311 Q 311 (697)
Q Consensus 311 ~ 311 (697)
+
T Consensus 234 ~ 234 (250)
T PRK14245 234 T 234 (250)
T ss_pred c
Confidence 3
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=325.83 Aligned_cols=196 Identities=24% Similarity=0.352 Sum_probs=164.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 368899998842 12469999999999999999999999999999999999998875 999999986432 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------cCC-----------CccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQL-----------PGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l-----------~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||.||+.+... .++ ....++.+.+|||||||||+|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 356999999988875 699999975210 011 1112345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++.+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999974 899999899875 55 4699999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=329.60 Aligned_cols=199 Identities=21% Similarity=0.308 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|+++..
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3699999999984 246999999999999999999999999999999999998741 0124999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCCc----cccccCCCCCHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLPG----FFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~~----~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++.+++. ||.||+.+.... ++.. ..++.+.+||||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 13469999999988875 999999865321 1211 1234568899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+.++||++++|++|+++..|+++++
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 68999988876 578889999999999999999988776
Q ss_pred H
Q 005423 310 L 310 (697)
Q Consensus 310 ~ 310 (697)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 4
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=326.51 Aligned_cols=198 Identities=26% Similarity=0.360 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 2469999999999999999999999999999999999853 421124999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++.+++|||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 1346999999998887 7999999864211 010 1124556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 68999988876 4788899999999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=328.44 Aligned_cols=197 Identities=24% Similarity=0.292 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 2469999999999999999999999999999999999998875 999999986 432
Q ss_pred C---------CccEEEEcCccc--cCCCCCHHHHHHHHH--------------------HcCCCc-cccccCCCCCHHHH
Q 005423 180 P---------YGSYGFVERETT--LIGSLTVREYLYYSA--------------------LLQLPG-FFCQRKNGLPCGER 227 (697)
Q Consensus 180 ~---------~~~~~yv~Q~~~--l~~~lTV~e~l~~~~--------------------~l~l~~-~~~~~~~~LSGGqr 227 (697)
. ++.++|++|++. +.+.+|+.||+.+.. .+++.. ..++.+..||||||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 1 235999999973 566778888875321 123322 34567789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+. ..+.+.||++++|++|++++.|++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 89999988876 577789999999999999999998
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 237 ~~~~ 240 (258)
T PRK11701 237 DQVL 240 (258)
T ss_pred HHHh
Confidence 8764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=326.10 Aligned_cols=180 Identities=30% Similarity=0.398 Sum_probs=155.3
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHH
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999998875 99999998764332345899999999998999999976
Q ss_pred HHH---------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005423 206 SAL---------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 264 (697)
Q Consensus 206 ~~~---------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L 264 (697)
... +++.+..++.+.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 421 11222234566899999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 265 KKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 265 ~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
++++++ |+|||+++|++ .++.++||++++|++|+++..|+..++
T Consensus 158 ~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCceec
Confidence 999864 89999988876 478899999999999999998865543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=328.19 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|++...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 489999999984 236999999999999999999999999999999999998641 0125999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|+..+++.+||+||+.+.... ++. ...++...+|||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 124699999999999989999999764321 111 1224456899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe------CCeEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGE 305 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~------~G~iv~~G~ 305 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.|+
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999964 68999988876 47888999999997 799999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++.+
T Consensus 237 ~~~~~~ 242 (258)
T PRK14241 237 TEKIFS 242 (258)
T ss_pred HHHHHh
Confidence 887643
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=325.81 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=166.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999984 23699999999999999999999999999999999998753 11135999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHcC--------------------CC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQ--------------------LP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~--------------------l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .|++||+.+..... +. ...++...+||||||||++
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC 156 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH
Confidence 1346999999998887 89999998753211 10 1124556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+. ..+.++||++++|++|++++.|+++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 157 IARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 78999988875 5788899999999999999999887754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=332.02 Aligned_cols=199 Identities=25% Similarity=0.346 Sum_probs=167.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMP 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~ 180 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|.+....
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 68999999884 3469999999999999999999999999999999999998750 0149999999875321
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
.+.++|++|++.++..+||+||+.+... +++....++....|||||||||+|
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 2358999999876666899999976421 112222345668999999999999
Q ss_pred HHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 233 ARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 233 A~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVA 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEE
Confidence 99999 599999999999999999999999999999875 89999988886 47888999999999999999
Q ss_pred EeCchhhH
Q 005423 303 FGETLACL 310 (697)
Q Consensus 303 ~G~~~~~~ 310 (697)
.|+++++.
T Consensus 236 ~g~~~~~~ 243 (272)
T PRK13547 236 HGAPADVL 243 (272)
T ss_pred ecCHHHHc
Confidence 99987763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=330.83 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58999999998531 12359999999999999999999999999999999999999875 999999987542
Q ss_pred CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++.++|++|++. .+...||.||+.+... +++.+..++.+..||||||||++|||||+.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 1356999999974 5667899999976432 1222334556789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+.. ++. .||++++|++|+++..|+++++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999875 999999888864 554 69999999999999999988775
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=331.16 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (697)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3699999999984 2469999999999999999999999999999999999986310 124999999987521
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CC----CccccccCCCCCHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QL----PGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l----~~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .||+||+.+.... ++ ....++...+|||||||||+|
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 1246999999998887 4999999764321 11 112345568899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-----------CeEE
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-----------GNTL 301 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-----------G~iv 301 (697)
||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||+++|++ .++.++||++++|++ |+++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEE
Confidence 9999999999999999999999999999999999964 68999988876 578899999999996 6789
Q ss_pred EEeCchhhHH
Q 005423 302 FFGETLACLQ 311 (697)
Q Consensus 302 ~~G~~~~~~~ 311 (697)
+.|+++++.+
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 9999988754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=328.76 Aligned_cols=198 Identities=23% Similarity=0.317 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999864 110124999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |+.||+.+.... ++. ...++....||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 13469999999988875 999999764211 111 1124566889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 68999988886 4788899999999999999999987764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=325.66 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 2469999999999999999999999999999999999988751 124999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |++||+.+.... ++. ...++...+|||||||||+
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 13569999999998875 999999875321 111 1124566889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.++|++++ ++.|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999995 588999988876 5788899999999999999999987764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=302.33 Aligned_cols=192 Identities=29% Similarity=0.323 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++++++++... .....||++|++.+++||.+||+|||||||||||-+|+|+..|++ |+|.+.|++...
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 57888998887543 245679999999999999999999999999999999999998876 999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.+|+|+|...++|++|..||+..... +++.+.+..+|++|||||+|||+||||+
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHh
Confidence 23679999999999999999999976432 3455566778899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
+..|+|||.||||-+||..+..+|.++|-.+. +.|+|.++++|+| .+..-|||.+-|.+|+++.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999998 4699999999987 4667899999999999874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=357.57 Aligned_cols=197 Identities=22% Similarity=0.335 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+. |+|.++|++....
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH---------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA---------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
...++|++|++.+++.+||+||+.+.. .+++....++.+.+|||||||||+|||||+.+|++|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 235999999999999999999997631 234444556778999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999988899999988875 5788899999999999999999987653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=324.50 Aligned_cols=199 Identities=22% Similarity=0.364 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 488999999884 24699999999999999999999999999999999999874 11135999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++...+||||||||++
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence 1356999999998887 8999999864321 111 0124456899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ ..+.++||++++|++|+++..|+++++.+
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999975 68999988876 46888999999999999999999887643
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=308.90 Aligned_cols=168 Identities=28% Similarity=0.446 Sum_probs=149.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+++. .+.+++++|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 3688999988531 2469999999999999999999999999999999999999875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.++|++|++.+++ .||+||+ ||||||||++|||+|+.+|++|||||||+|||+.++..+
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~~l------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l 135 (173)
T cd03246 75 GDHVGYLPQDDELFS-GSIAENI------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135 (173)
T ss_pred HhheEEECCCCcccc-CcHHHHC------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHH
Confidence 356999999998887 4999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 261 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 261 ~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+.|++++++|+|+|+++|++. .+ +.||++++|++|++
T Consensus 136 ~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 136 NQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999878999999888874 55 58999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=324.25 Aligned_cols=199 Identities=18% Similarity=0.219 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (697)
.++++|+++.+ + +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|+++...
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999987 2 369999999999999999999999999999999999998710 0249999999875321
Q ss_pred CccEEEEcCccc--cCCCCCHHHHHHHHH-----------------HcCCCc---cccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 YGSYGFVERETT--LIGSLTVREYLYYSA-----------------LLQLPG---FFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~e~l~~~~-----------------~l~l~~---~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.+.++|++|++. +.+..|+.+++.+.. .+++.. ..++...+|||||||||+|||||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 246999999974 445678888765421 122332 2355678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999764 89999988876 4677899999999999999999988764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=364.91 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+.+ .+++|+|+|++++|||.+||+||||||||||+++|+|++ |.. |+|.+||.+...
T Consensus 349 ~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECCEecccCCHHH
Confidence 5999999986642 347999999999999999999999999999999999999 654 999999987643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccc----cccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFF----CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~----~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|.. |++||+.++.. .++|+.. .+....||||||||++||||
T Consensus 421 lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 421 WRKHLSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred HHhheEEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 24679999999999964 99999987520 1233322 23456799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.++..+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999999999999999986 5789999899874 456799999999999999999887754
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=323.73 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999865 321135999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHcC--------------------C----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQ--------------------L----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~--------------------l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+..... + ....++.+.+||||||||++
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 1356999999998887 69999998643210 1 11123456899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.+.||++++|++|+++..|++.+..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999976 47999988876 5788899999999999999999888764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=324.83 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=165.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.-+++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 357899999884 3469999999999999999999999999999999999975 210134999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCCc----cccccCCCCCHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLPG----FFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~~----~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++. ||.||+.+.... ++.+ ..++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 13469999999988875 999999765211 1111 12345678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999996 489999988886 4788899999999999999999887654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=324.96 Aligned_cols=198 Identities=21% Similarity=0.296 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 478999999884 2469999999999999999999999999999999999987530 124999999987531
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .||.||+.+.... ++. +..++...+|||||||||+|
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 156 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCI 156 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHH
Confidence 1346999999999887 7999999865321 111 11234557899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999976 58999988886 5788999999999999999999887653
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=323.58 Aligned_cols=179 Identities=28% Similarity=0.388 Sum_probs=153.6
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCccEEEEc-CccccCCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIGS 196 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~-Q~~~l~~~ 196 (697)
.+++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++... .++.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4579999999999999999999999999999999999998875 999999986422 234689997 55678888
Q ss_pred CCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 197 LTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 197 lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+|++||+.+.... ++.+..++....||||||||++||++|+.+|++|||||||+|||+.++
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 189 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 9999998764321 222233456688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 258 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 258 ~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
..+.+.|++++++ ++|||+++|++ .++.++||++++|++|++++.|
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999864 78999988886 4788899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=326.18 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=168.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|++...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3689999999984 346999999999999999999999999999999999998641 1134999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++.+++||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 1346999999998887 5999999874311 111 123455689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999964 789999888864 788999999999999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=324.27 Aligned_cols=198 Identities=23% Similarity=0.357 Sum_probs=165.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+....
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 3688999988531 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------cCC-----------CccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQL-----------PGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l-----------~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||+||+.+... .++ .....+.++.|||||||||+|||+|
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 246999999998876 699999975310 011 1112345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++.+.
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999999999999997 7899999888864 554 8999999999999999988776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=317.81 Aligned_cols=183 Identities=29% Similarity=0.421 Sum_probs=157.1
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (697)
||+++|.+ +.+ |+|+++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 78888742 234 99999999 9999999999999999999999998875 999999986421 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
++.++|++|++.+++.+|++||+.+... +++....++.+.+||||||||++|||+|+.+|++|
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3469999999999988999999976421 12333345667899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999865 89999988876 4778899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=322.60 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 3688999988531 2369999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------c-----------CCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------L-----------QLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l-----------~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||+||+.+... . ++....++.+..||||||||++|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 346999999998886 699999975311 0 111123345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.. ||++++|++|++++.|+++++.+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999999999999974 889999888874 5654 99999999999999998877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=329.71 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=166.8
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~- 179 (697)
...++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 37 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 34689999999984 2369999999999999999999999999999999999854 200124999999987421
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CC----CccccccCCCCCHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QL----PGFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l----~~~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++.+++. ||.||+.+.... ++ .+..++.+..||||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 13469999999988875 999999875321 11 112245568999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988876 477889999999999999999998876
Q ss_pred H
Q 005423 310 L 310 (697)
Q Consensus 310 ~ 310 (697)
.
T Consensus 269 ~ 269 (286)
T PRK14275 269 F 269 (286)
T ss_pred H
Confidence 4
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=309.87 Aligned_cols=174 Identities=23% Similarity=0.394 Sum_probs=153.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.++++ .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... .+
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 4688999988531 1369999999999999999999999999999999999998875 999999986421 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++|++.+++ .|++||+ ...||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~ 138 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 56999999998886 6999998 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.|++++ ++.|||+++|++. ++ ..||++++|++|++++.|
T Consensus 139 ~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 139 SLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999996 5889999888875 55 469999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=321.72 Aligned_cols=196 Identities=23% Similarity=0.347 Sum_probs=164.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+.+ .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|.. |+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999998842 2359999999999999999999999999999999999998875 999999986532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------cCCC-----------ccccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------LQLP-----------GFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l~-----------~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++. ||+||+.+... .++. ...++...+|||||||||+|||+
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 13469999999988875 99999975311 1111 11223458999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999996 5899999999874 554 599999999999999988776543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=356.16 Aligned_cols=196 Identities=21% Similarity=0.358 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 489999999984 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+.+|||||||||+||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 2469999999999999999999976421 122333345668999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999988899999988876 578899999999999999999988765
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=316.43 Aligned_cols=200 Identities=26% Similarity=0.431 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCcc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~ 183 (697)
.+++++|++++ +.+.+++|+||.++||++++++|+|||||||.+|+|.|+++|+. |+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 47899999988 45689999999999999999999999999999999999999976 999999988643 3468
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHHcC-------------------CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERETTLIGSLTVREYLYYSALLQ-------------------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~l~-------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
|||.|.+..|++.+||.|.|.|.+.++ +.+...++..+||.|.+|++.+-.+++++|+++|
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI 153 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI 153 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE
Confidence 999999999999999999999876542 3344556678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
||||+|||||.+...+-+.+.+++++|.|||+++|.. ..+.++||++++|++|+.|.+|+.+++..-|
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 9999999999999999999999999999999988875 6899999999999999999999999987644
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=321.74 Aligned_cols=196 Identities=20% Similarity=0.290 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|||+++++||++||+|+||||||||+++|+|+ ++|.. |+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE---GDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCC---ceEEECCEEcccCCh
Confidence 589999999884 23699999999999999999999999999999999998 45554 999999987532
Q ss_pred -C-Cc-cEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCC-ccccccCC-CCCHHHHH
Q 005423 180 -P-YG-SYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLP-GFFCQRKN-GLPCGERR 228 (697)
Q Consensus 180 -~-~~-~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~-~~~~~~~~-~LSGGqrq 228 (697)
. .+ .++|++|++.+++.+|+.+++.+... ++++ ...++.+. +|||||||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 1 12 47899999999998999999865321 1122 12234455 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++.|+++
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999999999999877999999888864 56565 8999999999999999887
Q ss_pred hh
Q 005423 308 AC 309 (697)
Q Consensus 308 ~~ 309 (697)
.+
T Consensus 238 ~~ 239 (252)
T CHL00131 238 LA 239 (252)
T ss_pred hh
Confidence 43
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=356.93 Aligned_cols=197 Identities=20% Similarity=0.347 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCCccccccCCCCCHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 2469999999999999999999975321 122333455678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999998899999987765 5788899999999999999999987753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=326.55 Aligned_cols=198 Identities=20% Similarity=0.306 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +....+|+|.++|++...
T Consensus 24 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 24 VFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 589999999884 2469999999999999999999999999999999999986 211134999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc-CC-----------------------CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL-QL-----------------------PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-~l-----------------------~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||.||+.+.... +. ....++.+.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 1356999999998887 4999999864321 11 01123456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999976 68999988876 5788899999999999999999987763
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=334.58 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.|.. ..+.+|+|+|+++++||++||+|+||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 36999999999853 2346999999999999999999999999999999999998631 0124999999998631
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++||+|++.+++ .|++||+.|.... .+. ...+++...|||||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 2457999999999885 7999999865321 111 123456688999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|+++|+. ..+.++||||++|++|++++.|++++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999976 68999988886 5778889999999999999999999876
Q ss_pred H
Q 005423 311 Q 311 (697)
Q Consensus 311 ~ 311 (697)
+
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 3
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=342.82 Aligned_cols=197 Identities=25% Similarity=0.382 Sum_probs=170.5
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
+..++|+||++.|.. ++++|+++||+|++||-+||+|+|||||||++|+|.++.. . +|+|++||+++..
T Consensus 349 ~~~I~F~dV~f~y~~----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeCC----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 446999999999952 3469999999999999999999999999999999999987 3 3999999998643
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcc----ccccCCCCCHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGF----FCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~----~~~~~~~LSGGqrqRv~IA 233 (697)
.++.+||||||..||.+ ||.+|+.|+. . .++|+. ..++...|||||||||+||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 35679999999999965 9999998752 1 233433 3345578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||++.+|+|+++|||||+||..+..++++.+.+ ...++|+|++.|.. ....-||+|++|++|++.+.|+.++++.
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999999999 44689999988875 4567899999999999999999999875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=325.79 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 589999999984 2369999999999999999999999999999999999987410 134999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |++||+.+.... ++. ...++...+|||||||||+
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 13579999999988875 999999764311 111 1123456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.||++++|++|++++.|++++..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999986 68999988886 4788899999999999999999887754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=322.54 Aligned_cols=198 Identities=22% Similarity=0.314 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 489999999984 2469999999999999999999999999999999999986 211134999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++...+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 1346999999998886 7999999764211 111 1124556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+.+++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 68999988876 4788899999999999999999987764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=322.53 Aligned_cols=197 Identities=23% Similarity=0.283 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 489999999984 2368999999999999999999999999999999999998875 999999875 321
Q ss_pred -C--------CccEEEEcCccc--cCCCCCHHHHHHHH--------------------HHcCCC-ccccccCCCCCHHHH
Q 005423 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYS--------------------ALLQLP-GFFCQRKNGLPCGER 227 (697)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~e~l~~~--------------------~~l~l~-~~~~~~~~~LSGGqr 227 (697)
. .+.++|++|++. +.+..|+.||+.+. ..+++. ...++..+.||||||
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1 235899999974 44567888887431 112332 234566789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++.++||++++|++|++++.|++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999875 489999988875 578889999999999999999988
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 234 ~~~~ 237 (253)
T TIGR02323 234 DQVL 237 (253)
T ss_pred HHHh
Confidence 7664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=327.45 Aligned_cols=200 Identities=19% Similarity=0.241 Sum_probs=168.1
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (697)
...+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 18 HSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 34699999999984 246999999999999999999999999999999999997531 1135999999987521
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. ||.||+.+.... ++ .+..++.+.+|||||||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred cchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 13569999999988874 999999764211 11 11234566889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe---------CCeEEE
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNTLF 302 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~---------~G~iv~ 302 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999975 68999988886 57889999999998 899999
Q ss_pred EeCchhhH
Q 005423 303 FGETLACL 310 (697)
Q Consensus 303 ~G~~~~~~ 310 (697)
.|+++++.
T Consensus 250 ~g~~~~~~ 257 (274)
T PRK14265 250 FSPTEQMF 257 (274)
T ss_pred eCCHHHHH
Confidence 99998875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=369.30 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=167.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|++ ..+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 451 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHHH
Confidence 6999999999953 23579999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH------------c-------CCCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL------------L-------QLPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++||+|++.+|+ .|++||+.++.. . ++|... .+....||||||||++|||||
T Consensus 525 lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHhccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 2467999999999996 499999976411 1 122222 234468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+|||||||||+||+.++.++++.|+++ ++|+|+++|+++ ..+.||+|++|++|++++.|+.+++++
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999886 579999899874 456799999999999999999888754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=326.98 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=166.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~- 179 (697)
...++++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 37 ~~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 34689999999984 2469999999999999999999999999999999999986310 124999999987521
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHH------------------cCCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSAL------------------LQLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------------l~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. ||.||+.+... +++. ...++++.+|||||||||+
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred ccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 13569999999988875 99999976421 1221 1234567899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE-EEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~-vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++ .++.++||+++ +|++|++++.|+++++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999864 7899988876 57888999975 57999999999887753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=356.24 Aligned_cols=198 Identities=22% Similarity=0.364 Sum_probs=171.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|++....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 1249999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++||+|++.+++.+||+||+.+... +++....++.+++|||||||||+|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 2469999999999999999999976421 1222233456689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999988899999988875 578889999999999999999998765
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=325.74 Aligned_cols=199 Identities=21% Similarity=0.270 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 21 ~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 21 AMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 689999999984 346999999999999999999999999999999999998752 0135999999987532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCc----cccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPG----FFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~----~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .||+||+.+... +++.. ..++.+..||||||||++|
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 1356999999998887 799999976421 11211 1234567899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999986 48999988876 57889999999999999999999887643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=323.94 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~--~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999884 24699999999999999999999999999999999999875311 35999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++ ....++.+.+|||||||||+
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 1246999999998887 8999999764211 11 11234556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe-----CCeEEEEeCc
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFGET 306 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~-----~G~iv~~G~~ 306 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.|++
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999975 58999988886 57889999999998 5999999999
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 239 ~~~~ 242 (259)
T PRK14260 239 TQIF 242 (259)
T ss_pred HHHh
Confidence 8864
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=304.56 Aligned_cols=198 Identities=26% Similarity=0.291 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+.+.| +...+|++||+..+.|+++.|+|.|||||||+||||.=+..|.. |.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCCC
Confidence 57888888877 45679999999999999999999999999999999999988876 999999975311
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHH--------------------HHcCCCccccccCCCCCHHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYS--------------------ALLQLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~--------------------~~l~l~~~~~~~~~~LSGGq 226 (697)
.+.+.++|+|+..|..++||.||+.-+ +..++.+..+.+|..|||||
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchH
Confidence 123479999999999999999998432 23455555667889999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.++++|.. ..+.+...+|+.|++|.|-+.|+|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999999999999988875 578889999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
++++.
T Consensus 237 ~qvf~ 241 (256)
T COG4598 237 EQVFG 241 (256)
T ss_pred HHHhc
Confidence 98864
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=321.75 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 589999999884 34699999999999999999999999999999999998753 11135999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHcC--------------------CC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQ--------------------LP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~--------------------l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. ||+||+.+..... +. ...++....||||||||++
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 13469999999988874 9999998753211 10 1123456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999976 58999988876 4678899999999999999999987764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=323.07 Aligned_cols=200 Identities=22% Similarity=0.325 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++++ ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999984 2369999999999999999999999999999999999998741 135999999987421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|+..+++ .|+.||+.+.... ++. ...++....||||||||++
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 1346999999988887 8999999764211 111 1123455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeC-----CeEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFFGE 305 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~-----G~iv~~G~ 305 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++ |++++.|+
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 99999999999999999999999999999999999975 589999988876 578899999999999 99999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++.+
T Consensus 240 ~~~~~~ 245 (261)
T PRK14258 240 TKKIFN 245 (261)
T ss_pred HHHHHh
Confidence 988754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=324.61 Aligned_cols=203 Identities=24% Similarity=0.269 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecc----cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++||++.+... +...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013579999999999999999999999999999999999998865 999999986532
Q ss_pred -------CCccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++ .+.+..|+.|++.+.. .+++. ...++....||||||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHH
Confidence 134699999997 4667789999975421 11232 23456778999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++.++||++++|++|++++.|++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999999999999999999999999999999999999864 89999988876 57888999999999999999999887
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+.+
T Consensus 239 ~~~ 241 (268)
T PRK10419 239 KLT 241 (268)
T ss_pred ccC
Confidence 543
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=299.86 Aligned_cols=201 Identities=28% Similarity=0.359 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+..++++.+|+++ ...+|+|||+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||+++.-+-..-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778889998653 2569999999999999999999999999999999999999976 99999999988877777
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 185 GFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
|.|+|++.++|.+||.||+.|+..+ ++.+..++.+-+|||||||||.|||||+.+|++|+|
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL 156 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL 156 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence 9999999999999999999997533 344555677789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCchhhHHh
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLACLQH 312 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~~~~~ 312 (697)
|||+++||+-++.++.++|-++. +.|+.++++||. .+|..-++++++||+ .|+||..=+++-...|
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999987 568999987776 467778999999998 5899987777633333
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=318.66 Aligned_cols=182 Identities=23% Similarity=0.294 Sum_probs=155.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCccEEEEcCccc--cCC
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~----~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (697)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+ |+|.++|++... ..+.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~---G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS---GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccc---cEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999987 44 999999987532 1247999999974 556
Q ss_pred CCCHHHHHHHHHH-------------------cCCC---ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 196 SLTVREYLYYSAL-------------------LQLP---GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 196 ~lTV~e~l~~~~~-------------------l~l~---~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
.+|+.|++.+... ++++ ...++....|||||||||+|||+|+.+|+||||||||+|||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 7899998765321 1233 22345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 254 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999864 89999988876 4788899999999999999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=359.03 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=173.3
Q ss_pred ceEEEEeEEEEEecccc------cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
..++++||++.|..... ..+.+|+||||.+++||+++|+||||||||||+|+|+|+++|+. |+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 35899999999852100 12469999999999999999999999999999999999998875 9999999875
Q ss_pred CC--------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH--------------------cCCC-ccccccCCCCCHHH
Q 005423 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSAL--------------------LQLP-GFFCQRKNGLPCGE 226 (697)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~--------------------l~l~-~~~~~~~~~LSGGq 226 (697)
.. .++.++||+|++ .+++.+||.|++.+... ++++ ...++.+++|||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 32 134699999997 58889999999875321 2332 23456779999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
||||+|||||+.+|+||||||||+|||+.++.+++++|++++++ |.|||+++|+. ..+.++||+|++|++|++++.|+
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999865 89999987765 57889999999999999999999
Q ss_pred chhhH
Q 005423 306 TLACL 310 (697)
Q Consensus 306 ~~~~~ 310 (697)
+++++
T Consensus 548 ~~~i~ 552 (623)
T PRK10261 548 RRAVF 552 (623)
T ss_pred HHHHh
Confidence 98875
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=318.30 Aligned_cols=194 Identities=26% Similarity=0.384 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 368899998842 2469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------cCC-------C----ccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQL-------P----GFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l-------~----~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||+||+.+... .++ + ....+..+.|||||||||+|||+|
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 346999999998885 699999976311 011 1 112334578999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. .+. .||++++|++|++++.|+.++..
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999999987 899999888874 554 49999999999999998877654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=315.45 Aligned_cols=190 Identities=27% Similarity=0.422 Sum_probs=158.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 3789999998842 12469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccc-----------cCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQ-----------RKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~-----------~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++ .||.||+.+.. .+++.+..++ ...+||||||||++|||+
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 1246999999998886 69999986421 1122222222 236999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++. .+ ++||++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999764 89999888874 44 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=323.76 Aligned_cols=197 Identities=22% Similarity=0.359 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~~ 182 (697)
.++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++.... .+
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 2469999999999999999999999999999999999998875 9999999875322 23
Q ss_pred cEEEEcCccccC--CCCCHHHHHHHH-----------------------HHcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 183 SYGFVERETTLI--GSLTVREYLYYS-----------------------ALLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~e~l~~~-----------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++|++|++.+. ...++++++.+. ..+++.+..++.+..||||||||++|||||+
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 599999997542 223567765321 1123333445677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||+++++ +|++++.|+++++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999999999987899999988876 5788899999877 89999999987753
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=321.75 Aligned_cols=199 Identities=23% Similarity=0.279 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ....+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 589999999884 24699999999999999999999999999999999998752 10134999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CCC----ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QLP----GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l~----~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++.+++ .||.||+.+.... ++. ...++.+.+||||||||++||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred ChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 1346999999998887 4999999764311 110 112345678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe---------CCeEEEEe
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~---------~G~iv~~G 304 (697)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.|
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999999999999999999999999999999999976 58999988876 57899999999998 89999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+++++.+
T Consensus 242 ~~~~~~~ 248 (264)
T PRK14243 242 RTEKIFN 248 (264)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=360.65 Aligned_cols=197 Identities=22% Similarity=0.303 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++. .+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|+. |+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~~---~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 341 DIEFRNVTFTYPGK---EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLAS 414 (582)
T ss_pred eEEEEEEEEecCCC---CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHHH
Confidence 59999999999632 3579999999999999999999999999999999999999976 999999988543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH--------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA--------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+ .|++||+.++. .. ++|.. ..+....||||||||++|||
T Consensus 415 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 415 LRNQVALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHhhceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 2467999999999996 59999998731 01 12222 22334679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++..+
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999985 4689999899873 567899999999999999999888754
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=324.84 Aligned_cols=196 Identities=22% Similarity=0.333 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+.. ...+|+|+|+.+++||+++|+|+||||||||+++|+|+++ .. |+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~---G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE---GDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC---cEEEECCEEhhhCCHHH
Confidence 47899999999531 3469999999999999999999999999999999999987 43 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHH------------HHcCCCccccccCCC-----------CCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYS------------ALLQLPGFFCQRKNG-----------LPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~------------~~l~l~~~~~~~~~~-----------LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++ .||+||+... ..+++.+..++.+.+ ||||||||++|||||
T Consensus 75 lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HhhhEEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 1357999999999997 4999999532 122333333344444 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++ ..+. .||||++|++|++++.|++++++.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999999999999875 489999988886 4565 599999999999999999998865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=368.86 Aligned_cols=195 Identities=26% Similarity=0.364 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|++++|++ ..+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 477 ~I~~~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 477 YVELRNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREV 550 (710)
T ss_pred eEEEEEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999999976 999999987542
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++. .. ++|.. ..+....||||||||++||||
T Consensus 551 lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 551 LANSVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred HHhheeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 2468999999999995 59999997631 01 12322 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++.++++.|++ .++|+|+++|+++ ....||+|++|++|++++.|+.+++++
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999986 4789999899874 346699999999999999999998764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=313.29 Aligned_cols=189 Identities=29% Similarity=0.425 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+..+. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 68899999884321 12579999999999999999999999999999999999998875 999999987531
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++.+++.+|+.||+.+.... ++.+..++.++.||||||||++|||+|+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 135699999999999889999999865421 1222234566899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+|++|||||||+|||+.++..+.+.|+++++ .++|||+++|++. +.++||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999986 5899999899874 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=312.12 Aligned_cols=178 Identities=26% Similarity=0.328 Sum_probs=152.5
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------- 179 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------- 179 (697)
++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 367888874 2469999999999999999999999999999999999998875 999999987421
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++.++|++|++.+++.+|++||+.+... +++....++...+||||||||++|||||+.+
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 12469999999999998999999987431 1233334566689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. . .+.||++++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 9999999999999999999999999999877999999888874 3 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=358.35 Aligned_cols=197 Identities=29% Similarity=0.440 Sum_probs=171.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|++ .+++|+|+|++++|||.+||+||||||||||+++|+|+++|+. |+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999963 4579999999999999999999999999999999999999865 999999988653
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.+++|+|++.+|. .||+||+.++. ..++|+.. .+....||||||||++|||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 2467999999999997 69999998862 11234322 2345689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+||+||||||+||+.+...|.+.++++. +++|+++++|.++ .+.+ ||+|+||++|++++.|+.++++.
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999888 5678888888874 4544 99999999999999999998875
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=358.53 Aligned_cols=196 Identities=21% Similarity=0.303 Sum_probs=169.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+. .+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 340 ~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 340 RIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHSV 412 (592)
T ss_pred eEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999962 2469999999999999999999999999999999999999976 999999987643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH------------c-------CCCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL------------L-------QLPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++||+|++.+|+. |++||+.++.. . ++|+.. .+....||||||||++|||||
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL 491 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 24679999999999975 99999987520 1 133222 234467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+||+||||||+||+.++.+|.+.|+++.+ ++|+|+++|++. ....||+|++|++|++++.|+.++..+
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999864 588988899874 456799999999999999999998754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=340.00 Aligned_cols=197 Identities=27% Similarity=0.403 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+|+|+++ ..++|+|+|+++++||.+||+|+||||||||+++|+|-.+|+. |+|.+||.++...
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 69999999999753 3479999999999999999999999999999999999999986 9999999875432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------HcCC-------C----ccccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------LLQL-------P----GFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l-------~----~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++++.|..++|.. |+++||+++. ..++ | ....+..+.||||||||++|||+
T Consensus 410 ~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 410 LRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred HHHHHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 3478999999999965 9999998742 1111 1 12345568999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|.++++|||||.|||+.++.+|+++|.+-+ +|+|+|+++|+-. -.+.||||++|++|++++.|...+.+.
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999998876 4899999999875 347899999999999999999988764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=318.50 Aligned_cols=190 Identities=25% Similarity=0.370 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.+. .+.+|+++|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 589999999984 2469999999999999999999999999999999999998875 99999873 359
Q ss_pred EEEcCccccCCC--CCHHHHHHHH------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 185 GFVERETTLIGS--LTVREYLYYS------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 185 ~yv~Q~~~l~~~--lTV~e~l~~~------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
+|++|++.+++. .|+.+++.+. ..+++.+..++.+..|||||||||+|||||+.+|++|||||||+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred EEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999877765 3788776431 12344444566789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 251 HLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+.++..+.+.|++++++ |+|||+++|++ .++.+.||++++|+ |+++..|+++++.
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999865 89999988876 57889999999996 4799999887764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=314.69 Aligned_cols=191 Identities=23% Similarity=0.351 Sum_probs=160.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 3789999999853 12469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcCCCcc-----------ccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQLPGF-----------FCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++ .||+||+.+.. .+++.+. .++....||||||||++|||+|
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 2356999999998776 59999985321 1112111 1346789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++. .||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999864 689999888874 555 499999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=308.17 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=161.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHHH
Confidence 58999999998521 2369999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 252 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL 252 (697)
.++.++|++|++.+++ .||+||+.+.... .+. .++....||||||||++|||+|+.+|++|||||||+||
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 1356999999998886 5999999643110 011 34567899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 253 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 253 D~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|+.++..+.+.|+++. +|+|+|+++|++. ++.. ||++++|++|+++..|++
T Consensus 157 D~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 157 DYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999985 4899999888874 5554 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=350.28 Aligned_cols=192 Identities=19% Similarity=0.354 Sum_probs=166.6
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------Cc
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YG 182 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~ 182 (697)
+|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... ++
T Consensus 2 ~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHhC
Confidence 57888874 2469999999999999999999999999999999999998875 9999999875321 24
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++|++|++.+++.+||+||+.+... +++....++.+.+|||||||||+|||||+.+|
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 69999999988889999999975321 12222334566899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999988899999988775 578889999999999999999987764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=318.10 Aligned_cols=200 Identities=22% Similarity=0.249 Sum_probs=166.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (697)
..+.++++++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 3588899988873 3479999999999999999999999999999999999987621 135999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CCCc----cccccCCCCCHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QLPG----FFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l~~----~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.++ .+|+.||+.+.... ++.. ..++..+.||||||||++|
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 134699999999888 58999999865321 1111 1124457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe--------CCeEEEEe
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNTLFFG 304 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~--------~G~iv~~G 304 (697)
||||+.+|++|||||||+|||+.++.++.+.|++++ +++|+|+++|++ .++.++||++++|+ +|++++.|
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999996 478999988876 47889999999996 89999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+.+++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9887643
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=304.34 Aligned_cols=174 Identities=31% Similarity=0.462 Sum_probs=150.4
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----C
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----Y 181 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~ 181 (697)
+++|+++.|+. +.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~~-----~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG-----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEECC-----eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 36789988842 469999999999999999999999999999999999998875 9999999875321 2
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++| ....+++.+..++.+..||||||||++|||+|+.+|+++||||||+|||+.++..+.
T Consensus 73 ~~i~~~~q---------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 73 RKIAYVPQ---------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred HHHhHHHH---------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 35788888 333455655556778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 262 VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 262 ~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.|++++++ +.|+|+++|++ .++.++||++++|++|++++.|
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999876 88999988876 4777899999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=309.48 Aligned_cols=185 Identities=20% Similarity=0.258 Sum_probs=160.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~ 181 (697)
..++++|+++.+. .+.+++++|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 3589999999874 2469999999999999999999999999999999999999875 999999987542 22
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+.++|++|++.+++.+|+.||+.+... +++.+..++....|||||||||+|||+|+.+|++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 458999999999988999999866421 2333334566789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 999999999999999999999988899999988876 578899999999863
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=363.97 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|++++|++ ..+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 463 EIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPAD 536 (694)
T ss_pred eEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999953 23569999999999999999999999999999999999999976 999999987643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------L-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++.. . ++|.. ..+....||||||||++||||
T Consensus 537 lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred HHhccEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 2467999999999996 499999976420 1 22322 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
|+.+|++||||||||+||+.++.+|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++++.
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999987 4789999899874 4578999999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=316.63 Aligned_cols=196 Identities=24% Similarity=0.286 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEEeccc---------------ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 005423 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G 168 (697)
+.+.++||+++|...+ ...+.+|+++|+++++||+++|+||||||||||+++|+|+++|.. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4689999998886421 134569999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHH
Q 005423 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRR 229 (697)
Q Consensus 169 ~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqR 229 (697)
+|.++|. ++++.|+..+.+.+|+.||+.+... .++....++..++||||||||
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 9999985 3566777777778899999875321 123333455678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+||+||+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|+. .++.++||++++|++|++++.|+.+++
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988899999988875 578889999999999999999998877
Q ss_pred HH
Q 005423 310 LQ 311 (697)
Q Consensus 310 ~~ 311 (697)
.+
T Consensus 231 ~~ 232 (264)
T PRK13546 231 LP 232 (264)
T ss_pred HH
Confidence 54
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=307.85 Aligned_cols=181 Identities=25% Similarity=0.299 Sum_probs=157.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+... .+
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 36789999884 3469999999999999999999999999999999999998875 999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
+.++|++|++.+++.+|++||+.+.. .+++.+..++....||||||||++|||+|+.+|++||||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56999999998888899999997642 12344444566789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 249 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
|+|||+.++..+.+.|++++++|.|+|+++|++. +....||+++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999888999999999875 567799999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=355.20 Aligned_cols=198 Identities=26% Similarity=0.384 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|+++ .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 369999999999632 2469999999999999999999999999999999999999876 999999987543
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCcccc----------ccCCCCCHHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFC----------QRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~----------~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++. ..++.+... +....||||||||++||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa 489 (574)
T PRK11160 411 ALRQAISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489 (574)
T ss_pred HHHhheeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence 2457999999999996 49999997641 112222222 2446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ .+ ..||+|++|++|++++.|+.++.++
T Consensus 490 ll~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999986 5789999899885 34 5699999999999999999887754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=347.26 Aligned_cols=193 Identities=23% Similarity=0.357 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++.+||.||+.+... +++....++.+.+|||||||||+|||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 13469999999999999999999986421 1222233456789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999988899999988876 578889999999999999877653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=350.06 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CCC-
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~---~~~- 179 (697)
.++++|+++.|.+.+...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++ |.+ ...
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCcccccccc
Confidence 599999999985211123469999999999999999999999999999999999998875 999996 532 110
Q ss_pred -------CCccEEEEcCccccCCCCCHHHHHHHHH------------------HcCCCc-----cccccCCCCCHHHHHH
Q 005423 180 -------PYGSYGFVERETTLIGSLTVREYLYYSA------------------LLQLPG-----FFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------------~l~l~~-----~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++.+++.+||.||+.+.. .+++.. ..++++.+||||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1246999999998999999999997531 123332 2356778999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999864 89999988876 57889999999999999999999887
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+.+
T Consensus 515 ~~~ 517 (520)
T TIGR03269 515 IVE 517 (520)
T ss_pred HHh
Confidence 654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=349.14 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=169.8
Q ss_pred ceEEEEeEEEEEecccc------cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
..++++|+++.|..... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ .+ |+|.++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~---G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQ---GEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CC---cEEEECCEEc
Confidence 35899999999852100 13569999999999999999999999999999999999986 43 9999999865
Q ss_pred CC--------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH---------------------cCCC-ccccccCCCCCHH
Q 005423 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSAL---------------------LQLP-GFFCQRKNGLPCG 225 (697)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~---------------------l~l~-~~~~~~~~~LSGG 225 (697)
.. .++.++|++|++ .+++.+||.||+.+... +++. ...++.+++||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 32 124699999996 47888999999976421 1222 1235567899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|+. .++.++||++++|++|++++.|
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999865 89999977765 5788899999999999999999
Q ss_pred CchhhH
Q 005423 305 ETLACL 310 (697)
Q Consensus 305 ~~~~~~ 310 (697)
++++++
T Consensus 509 ~~~~~~ 514 (529)
T PRK15134 509 DCERVF 514 (529)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=318.41 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CceeEEEECCEeCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~---~~~G~I~i~G~~~~~-- 179 (697)
.+.++|+++++. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. .+.|++.++|.+...
T Consensus 10 ~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 10 VFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred heeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 589999999984 3569999999999999999999999999999999999998764 112444444444321
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++.+||+||+.+.... ++. ...++.+..||||||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 135699999999999889999999865321 121 11234568899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+|+.+|++|||||||+|||..++..+.+.|+++++ +.|||+++|++ ..+.++||++++|++|+++..|+.++..+
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999975 68999988886 47778999999999999999999887653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=296.16 Aligned_cols=156 Identities=26% Similarity=0.461 Sum_probs=140.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|++ +++++++|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~-----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFGG-----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEECC-----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 468999999852 369999999999999999999999999999999999999875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 259 (697)
.++.++|++| ||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus 73 ~~~~i~~~~q--------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~ 120 (163)
T cd03216 73 RRAGIAMVYQ--------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120 (163)
T ss_pred HhcCeEEEEe--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 1245888887 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 260 i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
+.+.|++++++|.|+|+++|++ .++.+.||++++|++|++++
T Consensus 121 l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 121 LFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999987799999988875 46788999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=313.45 Aligned_cols=202 Identities=22% Similarity=0.299 Sum_probs=162.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+. +|.. |+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG---GTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCc---eEEEECCCccccCCHH
Confidence 68899999884 246999999999999999999999999999999999995 4654 999999976432
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH--------------------------HcCCCc-cccccC-CCCCHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA--------------------------LLQLPG-FFCQRK-NGLPCGERRR 229 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------------~l~l~~-~~~~~~-~~LSGGqrqR 229 (697)
.+..++|++|++.+++.+|+.+++.... .+++++ ..++.. ++||||||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 1135999999988877766655543210 011221 122233 3799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++|++++.|+.+.
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999887899999888864 56666 89999999999999998875
Q ss_pred hHHhhhhcC
Q 005423 309 CLQHFSNAG 317 (697)
Q Consensus 309 ~~~~f~~~g 317 (697)
+ +.++..+
T Consensus 233 ~-~~~~~~~ 240 (248)
T PRK09580 233 V-KQLEEQG 240 (248)
T ss_pred H-HHHHhcC
Confidence 4 3344333
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=364.78 Aligned_cols=195 Identities=23% Similarity=0.340 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 473 ~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHHH
Confidence 5999999999952 3479999999999999999999999999999999999999876 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------c-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------L-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+. |++||+.++.. . ++|.. ..+....||||||||++|||
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 24679999999999965 99999987510 1 12222 22345789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++|+|||||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+++++
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999985 4789999899874 457899999999999999999988764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=356.39 Aligned_cols=201 Identities=22% Similarity=0.264 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++||++.|.... ...++|+||||++++||++||+||||||||||+|+|+|+++|.. |+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEeccccccc
Confidence 589999999995321 13479999999999999999999999999999999999998875 99999886320
Q ss_pred ----C---------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH--------------------cCCCc---cccccCC
Q 005423 179 ----M---------PYGSYGFVERET--TLIGSLTVREYLYYSAL--------------------LQLPG---FFCQRKN 220 (697)
Q Consensus 179 ----~---------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~--------------------l~l~~---~~~~~~~ 220 (697)
. ..+.+|||+|++ .+++.+||.||+.+... +++++ ..+++++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 113699999997 67888999999976432 23332 2456789
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+|||||||||+|||||+.+|+||||||||++||+.++.+++++|++++++ |+|||+++|+. ..+.++||||++|++|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCe
Confidence 99999999999999999999999999999999999999999999999865 89999977764 67889999999999999
Q ss_pred EEEEeCchhhH
Q 005423 300 TLFFGETLACL 310 (697)
Q Consensus 300 iv~~G~~~~~~ 310 (697)
+++.|++++++
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=348.13 Aligned_cols=197 Identities=22% Similarity=0.364 Sum_probs=168.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|. .+.+|+|||+++++||+++|+||||||||||+|+|+|+.+|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 68899999884 246999999999999999999999999999999999998862 1249999999875421
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccc-cccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFF-CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~-~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+++.+||.||+.+.... ++.... ++.+++|||||||||+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence 24699999999999999999999764321 121111 23468999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|++++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998899999987765 578889999999999999999987653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=312.30 Aligned_cols=190 Identities=21% Similarity=0.345 Sum_probs=159.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHHH
Confidence 589999999884 3469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
..+.++|++|++.+++ .||+||+.+... +++.+ ..++.+..|||||||||+|||+|+.+|+
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHhccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1346899999998887 499999975321 22321 2356678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe-CCeEEEEeC
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGE 305 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~-~G~iv~~G~ 305 (697)
+|||||||+|||+.++..+.+.|+++++ .|.|||+++|++. ++ +.||++++|+ ++..+.+|.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999976 4899999888874 55 4699999995 555555554
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=314.83 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|.+...
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 478999999884 2469999999999999999999999999999999999864 210124999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |+.||+.+.... ++. ...++....||||||||++
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 13569999999988875 999999764211 111 1123456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+.+|++++|++|++++.|+++++.
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 78999988886 5788999999999999999999988764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=317.06 Aligned_cols=199 Identities=20% Similarity=0.254 Sum_probs=166.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~--- 178 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3589999999984 2369999999999999999999999999999999999986421 13599999987542
Q ss_pred ------CCCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHH
Q 005423 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERR 228 (697)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrq 228 (697)
..++.++|++|++.+++. ||+||+.+.... ++. +..++....|||||||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 168 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ 168 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence 113468999999998875 999999764211 111 1123456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+.++
T Consensus 169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999977775 57888999999999999999999877
Q ss_pred hH
Q 005423 309 CL 310 (697)
Q Consensus 309 ~~ 310 (697)
+.
T Consensus 247 ~~ 248 (265)
T PRK14252 247 IF 248 (265)
T ss_pred HH
Confidence 54
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=363.53 Aligned_cols=196 Identities=24% Similarity=0.373 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|++. ..+++|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 59999999999632 23579999999999999999999999999999999999999976 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++|||.++. .. ++|+. ..+....||||||||++||||
T Consensus 553 lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 553 LHRQVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHhhceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 2457999999999996 59999998742 01 12222 223446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.||+|++|++|++++.|+.++..+
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999988 22 236789999899874 456799999999999999999988764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=311.10 Aligned_cols=183 Identities=25% Similarity=0.283 Sum_probs=153.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
+.++++++.|. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++....
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~----- 89 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLL----- 89 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhh-----
Confidence 66777877663 4579999999999999999999999999999999999998875 9999999864311
Q ss_pred EEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 186 FVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.+...+.+.+||+||+.+... +++.+..++...+||||||||++|||+|+.+|++||||
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112334567899999876432 12333345566899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999987789999988876 5778899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=296.87 Aligned_cols=164 Identities=29% Similarity=0.411 Sum_probs=145.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 368899998842 2469999999999999999999999999999999999998875 99999874 5699
Q ss_pred EEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
|++|++.++ ..|++||+.+. ...+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 135 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 999998765 57999999763 457899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++ +.|+|+++|++. . ...||++++|++|.
T Consensus 136 ~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 136 EL---GITVISVGHRPS-L-WKFHDRVLDLDGEG 164 (166)
T ss_pred Hh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence 86 589999899874 3 47999999998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=305.96 Aligned_cols=181 Identities=25% Similarity=0.291 Sum_probs=155.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|.+... .+
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 67899999884 2469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHc----------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALL----------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+.++|++|++.+++.+|+.||+.+.... ++.+..++.+..||||||||++|||||+.+|++|+|
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5689999999999999999999765321 222334556689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
||||+|||+.++..+.+.|++++++|.|||+++|++. .+....+|++++
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999877899999888864 666667777766
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=298.79 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=146.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.++ ...+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 3678999988532 1369999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.++|++|++.+++ .|+.||+ |||||||||+|||+|+.+|++|||||||+|||+.++..+
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l 135 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 246999999998886 6999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 261 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 261 ~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
.+.|+++++ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 136 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 136 LEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999964 689999888874 6666 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=288.02 Aligned_cols=194 Identities=26% Similarity=0.335 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.| +..++|.||++..+.||.+.++||||+|||||+|.|.=+.-|.+ |+..+.|...+.
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCcc
Confidence 47899999988 35689999999999999999999999999999999998777764 999998854211
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHH--------------------HHcCCCccccccCCCCCHHHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYS--------------------ALLQLPGFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~--------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.+|.|+|+..+.|++||.|||--+ ..+++.+..++.+-.|||||+|||+||
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence 235689999999999999999998432 245677778889999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
|||+++|++|++||||++|||+-..+|++.+++|+..|.|-++++|.- ....+.+.+|+.|++|+||+.|+.+
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999999999988888875 4677889999999999999999864
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=315.35 Aligned_cols=181 Identities=26% Similarity=0.361 Sum_probs=156.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCccccCCCCCH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV 199 (697)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ . |+|.++|++.... .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~---G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-S---GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-C---eEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999864 3 9999999875321 2458999999888888999
Q ss_pred HHHHHHHHH------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCH
Q 005423 200 REYLYYSAL------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM-------RPHVLFIDEPLYHLDS 254 (697)
Q Consensus 200 ~e~l~~~~~------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~-------~P~iLlLDEPTsgLD~ 254 (697)
+||+.+... +++....++..+.||||||||++|||||+. +|++|||||||+|||+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~ 166 (248)
T PRK03695 87 FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166 (248)
T ss_pred HHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCH
Confidence 999976421 123333345678999999999999999998 6799999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 255 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+.+++.
T Consensus 167 ~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 167 AQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999987899999988876 4788999999999999999999887653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=348.88 Aligned_cols=198 Identities=27% Similarity=0.410 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++ ..+++|+|+|+++++||.++|+||||||||||+++|+|+++|.. |+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHHH
Confidence 5999999999953 23479999999999999999999999999999999999999875 999999987543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------c-------CCCc----cccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------L-------QLPG----FFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l-------~l~~----~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++. |++||+.+... . ++|+ ...+....||||||||++||||
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 24579999999999975 99999974210 0 1222 1234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++.++.+.|+++..+|+|+|+++|++. ..+.||+|++|++|++++.|+.++..+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999999767899999999874 457899999999999999999877643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=323.01 Aligned_cols=199 Identities=24% Similarity=0.332 Sum_probs=165.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..+.++||++.+. .+.+|+++|+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3589999999984 246999999999999999999999999999999999998521 0124999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------------------CCC----cccccc
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------------------QLP----GFFCQR 218 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------------------~l~----~~~~~~ 218 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++.
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 1246999999998887 5999999875321 111 112345
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE-EEEeC
Q 005423 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLLSN 297 (697)
Q Consensus 219 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v-~vL~~ 297 (697)
+++|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++++++ .|||+++|++ ..+.++||++ ++|++
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~-~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM-QQAARISDQTAVFLTG 275 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCH-HHHHHhcCEEEEEecC
Confidence 6889999999999999999999999999999999999999999999999864 8999988876 4778899997 57799
Q ss_pred CeEEEEeCchhhH
Q 005423 298 GNTLFFGETLACL 310 (697)
Q Consensus 298 G~iv~~G~~~~~~ 310 (697)
|++++.|+++++.
T Consensus 276 G~i~~~g~~~~~~ 288 (305)
T PRK14264 276 GELVEYDDTDKIF 288 (305)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987654
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=313.82 Aligned_cols=198 Identities=20% Similarity=0.262 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 359999999998531 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH------------HcCC-----------CccccccCCCCCHHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQL-----------PGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l-----------~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++ .|++||+.... ..++ .....+....||||||||++||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 1356999999998886 49998874310 0111 111233457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|++. .+.. ||++++|++|++++.|+++++.+
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999975 4889999888875 5554 99999999999999999877644
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=345.95 Aligned_cols=205 Identities=23% Similarity=0.292 Sum_probs=169.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~~-- 180 (697)
.++++|+++.|...+ ..+.+|+|+|+++++||++||+||||||||||+|+|+|+++|. ...+|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 489999999985211 1247999999999999999999999999999999999999862 01259999999875321
Q ss_pred -------CccEEEEcCccc--cCCCCCHHHHHHHHH--------------------HcCCCc---cccccCCCCCHHHHH
Q 005423 181 -------YGSYGFVERETT--LIGSLTVREYLYYSA--------------------LLQLPG---FFCQRKNGLPCGERR 228 (697)
Q Consensus 181 -------~~~~~yv~Q~~~--l~~~lTV~e~l~~~~--------------------~l~l~~---~~~~~~~~LSGGqrq 228 (697)
.+.+||++|++. +.+.+|+.|++.+.. .+++.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 146999999974 666789999876421 112322 135677899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|++ ..+.++||+|++|++|++++.|+++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999865 89999988876 5778899999999999999999988
Q ss_pred hhHH
Q 005423 308 ACLQ 311 (697)
Q Consensus 308 ~~~~ 311 (697)
++++
T Consensus 243 ~~~~ 246 (529)
T PRK15134 243 TLFS 246 (529)
T ss_pred HHhh
Confidence 7643
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=352.10 Aligned_cols=196 Identities=24% Similarity=0.358 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|++ .+++|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999963 2469999999999999999999999999999999999999876 9999999876432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCccc----cccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGFF----CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~~----~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|+ .|++||+.++. .+ ++|... .+....||||||||++||||
T Consensus 407 ~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHhheEEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 367999999999996 59999998742 01 123222 23346799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++..+
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999885 4789999899874 457899999999999999999877653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=344.76 Aligned_cols=197 Identities=23% Similarity=0.254 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 488999999984 2359999999999999999999999999999999999998875 999999875421 1
Q ss_pred -CccEEEEcCcccc--C------CCCCHHHHHHH-----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 181 -YGSYGFVERETTL--I------GSLTVREYLYY-----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 181 -~~~~~yv~Q~~~l--~------~~lTV~e~l~~-----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
++.++|++|++.. + ..+||+|++.+ ...+++.+..++.+.+|||||||||+||+||+.+|
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2358999998542 1 14689888642 12345555567788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
++|||||||+|||+.++..+.+.|++++++|.|||+++|+. ..+.++||++++|++|+++..|+++++.
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999988899999988876 5788999999999999999999987754
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=302.77 Aligned_cols=178 Identities=26% Similarity=0.300 Sum_probs=151.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 36789999884 3469999999999999999999999999999999999998875 999999987432 12
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
+.++|++|++.+++.+||.||+.+... +++.+..++.+..|||||||||+|||+|+.+|++|+||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 152 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD 152 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 568999999988888999999976432 12333345567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEE
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 294 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~v 294 (697)
|||+|||+.++..+.+.|++++++|.|+|+++|++.. -.+|+++.
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999998889999999998753 24677764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=346.03 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=166.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG--------- 174 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G--------- 174 (697)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+. +|+. |+|.++|
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEecccccccccc
Confidence 46899999884 246999999999999999999999999999999999996 5654 9999972
Q ss_pred --------------EeC--------C-------CCCccEEEEcCc-cccCCCCCHHHHHHHHHH----------------
Q 005423 175 --------------AKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSAL---------------- 208 (697)
Q Consensus 175 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~---------------- 208 (697)
.++ . ..++.++|++|+ +.+++.+||+||+.+...
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 0 012458999997 678888999999976431
Q ss_pred ---cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHH
Q 005423 209 ---LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTE 284 (697)
Q Consensus 209 ---l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~ 284 (697)
+++.+..++.+++|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||+++|++ ..
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~ 231 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EV 231 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 1233334566799999999999999999999999999999999999999999999999975 589999988876 56
Q ss_pred HHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 285 VFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 285 i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
+.++||++++|++|++++.|+++++.+.+
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 78899999999999999999988876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=310.50 Aligned_cols=188 Identities=24% Similarity=0.348 Sum_probs=158.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.++++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 358999999998532 12469999999999999999999999999999999999998875 999999976421
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH----------------------c--CCCccccccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL----------------------L--QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l--~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++|++|++.+++ .||+||+.+... + ++....++.+++|||||||||+|||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 1356999999998876 599999965210 1 1223345567899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++. .||++++|++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999875 689999888875 564 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=332.12 Aligned_cols=194 Identities=23% Similarity=0.374 Sum_probs=171.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|. ..++|+||||++++||++||+|.||||||||+|+|+|.++|++ |+|.++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 3689999999994 4689999999999999999999999999999999999999986 9999999976421
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccccccCCCCCHHHHHHHHHHH
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
...|+.|+|+..|+|++||.||+.++... .+....+....+||+||||-|+|||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 24689999999999999999999765321 1211134455899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||..+++|||||||||+|+......+.+.+++|+++|.+||+++|. ..+++++||||.||+||+.|..++.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999997765 6799999999999999999998883
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=344.18 Aligned_cols=200 Identities=20% Similarity=0.274 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (697)
..++++|+++.|... +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++| ++ |+|.++|++....
T Consensus 258 ~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCH
Confidence 358999999887321 124699999999999999999999999999999999999874 54 9999999875321
Q ss_pred ----CccEEEEcCcc---ccCCCCCHHHHHHHHHH------------------------cCCC-ccccccCCCCCHHHHH
Q 005423 181 ----YGSYGFVERET---TLIGSLTVREYLYYSAL------------------------LQLP-GFFCQRKNGLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~------------------------l~l~-~~~~~~~~~LSGGqrq 228 (697)
+..++|++|++ .+++.+||.||+.+... +++. ...++++..|||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 23589999985 47788999999975310 1222 1234566899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||+++|+. .++.++||++++|++|+++..|++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999998899999988876 57889999999999999999998766
Q ss_pred h
Q 005423 309 C 309 (697)
Q Consensus 309 ~ 309 (697)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 4
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=344.67 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+ ..+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHHH
Confidence 58999998753 138999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCc---cccCCCCCHHHHHHHHHH----------------------------cCCC-ccccccCCCCCHHH
Q 005423 181 --YGSYGFVERE---TTLIGSLTVREYLYYSAL----------------------------LQLP-GFFCQRKNGLPCGE 226 (697)
Q Consensus 181 --~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~----------------------------l~l~-~~~~~~~~~LSGGq 226 (697)
++.++|++|+ ..+++.+||.||+.+... +++. +..++.+++|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 2468999998 468888999999865311 2232 33456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|++ .++.++||++++|++|++++.++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999999988899999988876 578899999999999999988876
Q ss_pred h
Q 005423 307 L 307 (697)
Q Consensus 307 ~ 307 (697)
.
T Consensus 494 ~ 494 (510)
T PRK09700 494 R 494 (510)
T ss_pred c
Confidence 3
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=305.39 Aligned_cols=187 Identities=22% Similarity=0.316 Sum_probs=155.2
Q ss_pred EEEEeEEEEEeccccc--CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 005423 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSEM 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~--G~--~~~~ 179 (697)
++++|+++.|..++.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6789999998532111 2469999999999999999999999999999999999998875 999998 42 2211
Q ss_pred ---------CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCcc-ccccCCCCCHHHHHHH
Q 005423 180 ---------PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGF-FCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 ---------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~-~~~~~~~LSGGqrqRv 230 (697)
..+.++|++|++.+++.+||.|++.+... +++... .++.+.+||||||||+
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 12468999999999999999999876321 122221 2456789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 999999999999999999999999999999999999987899999988884 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=303.55 Aligned_cols=180 Identities=25% Similarity=0.356 Sum_probs=149.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++||++.+.+++...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 46899999885311001369999999999999999999999999999999999998875 9999998 589
Q ss_pred EEcCccccCCCCCHHHHHHHHHH------------cCCC-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 186 FVERETTLIGSLTVREYLYYSAL------------LQLP-----------GFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~-----------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
|++|++.++ ..|++||+.+... +++. ....+...+||||||||++|||+|+.+|++
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l 148 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI 148 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999888 4699999976310 1111 112344588999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 243 LFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++|||||+|||+.++..+.+ +++++.++|+|||+++|++. .+.. ||++++|++|+
T Consensus 149 lllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 149 YLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999998 56777666899999899874 5655 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=302.34 Aligned_cols=182 Identities=26% Similarity=0.319 Sum_probs=155.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+++. |+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 478999999884 2469999999999999999999999999999999999998875 999999986432 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|++.+++.+||+||+.+... +++....++.++.||||||||++|||+|+.+|++|||||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 153 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 68999999888888999999976432 123223345668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
||+|||+.++..+.+.|++++++|+|||+++|+.. ++.. |+++.+..
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999888999999888864 5554 88887743
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=376.27 Aligned_cols=204 Identities=21% Similarity=0.289 Sum_probs=179.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||++.|.+ ..+.+|+|||+.+++||++||+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46999999999852 13579999999999999999999999999999999999999876 999999987632
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.+||++|++.+++.+||+|++.+.+.+ ++.+..+++.++|||||||||+||+||+.+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P 2089 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP 2089 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 235699999999999999999999875432 2223345567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
+||||||||+|||+.++..+.+.|++++++|+|||+++|+. +++..+|||+++|++|+++..|+++++.+.|.
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999999988899999988775 68999999999999999999999999887664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=310.44 Aligned_cols=180 Identities=29% Similarity=0.414 Sum_probs=159.2
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---------CCCccEEEEcCccccCCCCC
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLT 198 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~~l~~~lT 198 (697)
++++..+.-.++||-|+||||||||+|+|+|+..|+. |.|.+||+... ..++++|||+||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4555555547999999999999999999999999986 99999997421 12468999999999999999
Q ss_pred HHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 199 VREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 199 V~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
|+.||.|+. .+++.+.++++|..|||||||||+|+|||++.|++|+||||.+.||-....+++-.|+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE 172 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHH
Confidence 999999864 3455666789999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 266 KLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 266 ~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+++ +.-|+.++|.. .|+.+++|+|++|++|++..+|+.+++..
T Consensus 173 RL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 173 RLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99965 67788877764 79999999999999999999999998864
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=348.98 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+.. .+++|+|+|+++++||.++|+|+||||||||+|+|+|+++|.+ |+|.+||.+...
T Consensus 330 ~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 330 DVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLAS 403 (571)
T ss_pred eEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHHH
Confidence 59999999998532 3469999999999999999999999999999999999999876 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------c-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------L-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+. |++|||.++.. + ++|.. ..+....||||||||++|||
T Consensus 404 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 404 LRRQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHhhceEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 23579999999999964 99999976420 1 12322 22334679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+.+|+||+||||||+||..++..+++.|+++. +++|+|+++|++ ...+.||+|++|++|+++..|+.++.++
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999999985 568999989987 4568899999999999999999888753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=358.34 Aligned_cols=198 Identities=25% Similarity=0.371 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+|.|+. +...++|+|+|+++++|+.+||+|||||||||+..+|-+.+.|.. |+|.+||.+++.
T Consensus 987 ~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred EEEEeeeEeeCCC--CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHHH
Confidence 5999999999984 356789999999999999999999999999999999999999876 999999998654
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~a 235 (697)
.++++|.|.|+|.||. .|++||+.|+. ...+|+.+ .++..+||||||||+|||||
T Consensus 1062 LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 2468999999999996 49999999971 11244433 34557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++||+||||||.||+||+++.+.|-+.|.+.. .|+|.|++.|..+ ..+.||.|+|+++|+|++.|+-++++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999999999999999999976 5677777788875 357899999999999999999998875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=355.36 Aligned_cols=197 Identities=28% Similarity=0.412 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+. ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 455 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 455 AITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528 (694)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHHH
Confidence 6999999999953 23469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++ .|++||+.+.. . .++|.. ..+...+||||||||++||||
T Consensus 529 ~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 529 LRRQMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHhCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 2457999999999996 59999997631 0 112322 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+|||||||||+||+.++.++++.|+++. .++|+|+++|++. .+ +.||+|++|++|++++.|+.+++.+
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999985 5789999999874 34 5699999999999999999888754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=306.40 Aligned_cols=175 Identities=30% Similarity=0.449 Sum_probs=149.1
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCC--CCCHHHHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG--SLTVREYLYYSAL 208 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~--~lTV~e~l~~~~~ 208 (697)
+++++||+++|+|+||||||||+++|+|+.++++ |+|.++|++....++.++|++|++.++. .+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4578999999999999999999999999998875 9999999875433457999999987642 4799999865311
Q ss_pred -----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 209 -----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 209 -----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
+++....++.+.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122223345568999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 266 ~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+++++|+|+|+++|++ .++.++||+++++ +|++++.|+.+++.
T Consensus 158 ~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 158 ELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9987899999988886 4788999999999 89999999987754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.67 Aligned_cols=196 Identities=23% Similarity=0.282 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++||++.+.+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|+++|.. |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 358899998887532 22469999999999999999999999999999999999998875 9999999752
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
++.+...+.+.+|++||+.+... +++....++.++.||||||||++|||||+.+|++||
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL 166 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV 166 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 12223445667899999865321 223334456778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++...+
T Consensus 167 LDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 167 IDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999999999999988899999988876 5788899999999999999999998876543
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=299.32 Aligned_cols=178 Identities=22% Similarity=0.305 Sum_probs=151.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (697)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++.... +
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 68899999884 2469999999999999999999999999999999999998875 9999999865321 3
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH--------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL--------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+.++|++|+..+++.+||+||+.+... ++++...++...+||||||||++|||+|+.+|++|||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 569999999888888999999987421 123333445668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
||+|||+.++..+.+.|++++++|.|||+++|++. ..+.+|...
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999878999999888864 335576543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=346.08 Aligned_cols=197 Identities=23% Similarity=0.287 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+. ..+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 5899999999853 23469999999999999999999999999999999999999876 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++. |++||+.++. .. ++|+. ..+....||||||||++||||
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 23579999999999964 9999997641 01 12221 223446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||++||+.++..+.+.|+++. +|+|+|+++|++. ..+.||++++|++|++++.|+.+++.+
T Consensus 466 ll~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999986 5889999999874 346799999999999999999887654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=345.72 Aligned_cols=196 Identities=23% Similarity=0.302 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999853 2368999999999999999999999999999999999999876 999999987543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++ .|++||+.++.. .++|+. ..+....||||||||++||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 2357999999999986 599999976410 112221 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++||||||||+||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+.++..+
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999885 5899999999874 44 6799999999999999999887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=346.17 Aligned_cols=199 Identities=22% Similarity=0.357 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|+++.|+.. ..+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPA 410 (576)
T ss_pred ceEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHH
Confidence 369999999999632 12579999999999999999999999999999999999999875 9999999875432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++|++|++.+|+ .|++||+.++. .. ++|.. ..+....||||||||++|||
T Consensus 411 ~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 411 ELRARMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred HHHHhceEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHH
Confidence 357999999999996 49999998731 01 12221 22344679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++.+|++|+||||||+||+.++..+++.|+++. +++|+|+++|++. ....||+|++|++|+++..|+.++..+
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999999999999999985 5789999899873 457899999999999999999887643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=304.53 Aligned_cols=190 Identities=26% Similarity=0.305 Sum_probs=158.9
Q ss_pred eEEEEeEEEEEeccc--cc--CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 005423 105 SVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~ 180 (697)
.++++||++.|+.+. .. ...+++||||.+++||+++|+|+||||||||.|+|.|+++|++ |+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhc
Confidence 589999999987532 11 2479999999999999999999999999999999999999976 9999999874322
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 259 (697)
. .....+....+-..++++. ...+++++||||||||++|||||+.+|+++++|||||+||...+.+
T Consensus 81 ~-------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaq 147 (268)
T COG4608 81 S-------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147 (268)
T ss_pred c-------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHH
Confidence 1 0101111222333445554 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 260 MMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 260 i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+++++ .|.|.++++|+ ...+..++|||.||..|++|+.|+.++++.
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHD-L~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHD-LSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEE-HHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999995 59999997776 468999999999999999999999998865
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=373.52 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--------------------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-------------------- 164 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-------------------- 164 (697)
.++++||+|.|++. ..+++|+|+|+++++|+.+||+||||||||||+++|.|+++|..
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 59999999999742 23479999999999999999999999999999999999998720
Q ss_pred -------------------------------CceeEEEECCEeCCC-----CCccEEEEcCccccCCCCCHHHHHHHHH-
Q 005423 165 -------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSA- 207 (697)
Q Consensus 165 -------------------------------~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~- 207 (697)
..+|+|.+||.++.. .++.++||+|++.||+ .|++|||.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC
Confidence 035999999998643 2467999999999995 69999998852
Q ss_pred -------------------HcCCCccc----cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005423 208 -------------------LLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 264 (697)
Q Consensus 208 -------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L 264 (697)
...+|+.+ .+....||||||||++|||||+.+|+|||||||||+||+.+++.|.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 01234332 2345679999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC----CeEE-EEeCchhhHH
Q 005423 265 KKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 311 (697)
Q Consensus 265 ~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 311 (697)
+++. .+++|+|+++|+.+ ..+.||+|++|++ |+++ +.|+.+++++
T Consensus 1402 ~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9987 46899999899874 4567999999999 9955 8999888753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=337.96 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++ +.+++|+|+++++||+++|+||||||||||+|+|+|+.+|.+ |+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 578888863 148999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHHH-------------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYSA-------------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~-------------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
++.++|++|++ .+++.+|+.||+.+.. .+++. ...++++..||||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 24689999986 4888899999986421 12231 23456678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+|+.+|+||||||||+|||+.++.+++++|++++++|.|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999998899999988876 578899999999999999999988764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=322.30 Aligned_cols=203 Identities=26% Similarity=0.400 Sum_probs=177.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..+.++++++.-++ ..+++|+++||.+.+||.+||+||||||||||.|+|.|..+|.. |.|.+||.+...+
T Consensus 333 g~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~e 406 (580)
T COG4618 333 GALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDRE 406 (580)
T ss_pred ceeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCHH
Confidence 46999999985432 45789999999999999999999999999999999999999876 9999999876443
Q ss_pred --CccEEEEcCccccCCCCCHHHHHH-HH-----------H--------HcCCCccccc----cCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLY-YS-----------A--------LLQLPGFFCQ----RKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~-~~-----------~--------~l~l~~~~~~----~~~~LSGGqrqRv~IA~ 234 (697)
-+.+||.||+-.||+. ||.||+. |. + .+++|..++. ....||||||||+++||
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 2579999999999975 9999994 22 1 2456655443 34789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++..+.
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999885 678999999999999999999999998765
Q ss_pred h
Q 005423 315 N 315 (697)
Q Consensus 315 ~ 315 (697)
.
T Consensus 564 ~ 564 (580)
T COG4618 564 R 564 (580)
T ss_pred C
Confidence 3
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=336.62 Aligned_cols=191 Identities=21% Similarity=0.328 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 578888863 36999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHHH-------------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYSA-------------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~-------------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
++.++|++|++ .+++.+||.||+.+.. .+++. ...++.+..||||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 24699999995 5778899999996521 01232 23456678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999988899999988875 588899999999999999999988765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=337.51 Aligned_cols=198 Identities=22% Similarity=0.289 Sum_probs=166.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (697)
..++++|+++.+.++ ..+.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+ |+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~---G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE---GNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---eEEEECCEECCCCCH
Confidence 358999999876311 124699999999999999999999999999999999999975 44 9999999875321
Q ss_pred ----CccEEEEcCcc---ccCCCCCHHHHHHHHHH------------------------cCCCc-cccccCCCCCHHHHH
Q 005423 181 ----YGSYGFVERET---TLIGSLTVREYLYYSAL------------------------LQLPG-FFCQRKNGLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~------------------------l~l~~-~~~~~~~~LSGGqrq 228 (697)
++.++|++|+. .+++.+||+||+.+... +++.. ..++++..|||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 24689999995 57888999999865310 11221 234556899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||+|+.+|++|||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999999998899999988876 5788999999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=336.81 Aligned_cols=199 Identities=24% Similarity=0.293 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|+..+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+. |+|.+||+++...
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999985321 23469999999999999999999999999999999999999875 9999999875421
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|+..+++.+|+.||+.+... +++.+..++.++.||||||||++|||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999999999999976421 2333444567789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++++.|++++.
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 9999999999999999999999999999999878999999888864 44 57999999999999999988754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=306.97 Aligned_cols=187 Identities=23% Similarity=0.346 Sum_probs=156.6
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------
Confidence 346999999984 1369999999999999999999999999999999999999875 9999988
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH------------cCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL------------LQLPGF-----------FCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++|++|++.+++. ||+||+.+... +++... ..+....||||||||++|||+|+.+
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 38999999988875 99999875311 111111 1123468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|||||||+|||+.++..+++.+ ++++ ++.|||+++|++. .+ ..||++++|++|++++.|+++++.+
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999865 5654 4789999888875 44 5799999999999999999887643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=293.49 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=134.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCccEEEEcCccc--c
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT--L 193 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~--l 193 (697)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++... .++.++|++|++. +
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 469999999999999999999999999999999999998875 999999987531 1246899999973 4
Q ss_pred CCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 194 IGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 194 ~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
+ ..||+||+.+... +++.+..++.+.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 82 ~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 5 4699999977431 1233334566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 255 VSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.++..+.+.|++++++|+|||+++|++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999888999999989863
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=298.12 Aligned_cols=183 Identities=23% Similarity=0.292 Sum_probs=150.8
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (697)
.+.|+.+.++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 45677887742 2469999999999999999999999999999999999998875 999999976421
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH------------cCCCcc-----------ccccCCCCCHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL------------LQLPGF-----------FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~~~-----------~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++|++|++.++ ..|++||+.+... +++.+. ..+.+..|||||||||+|||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 124699999999887 5799999976311 111111 12456899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+|+.+|++|||||||+|||+.++..+++ +++.+++.|.|+|+++|++. .+ ..||++++|++|.
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 9999999999999999999999999998 67777777899999888875 45 4699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=289.59 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=173.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (697)
++++||+++| +.+.+|+++|..+++|.+++|+|||||||||||.+++++++.++ |+|.++|.+.....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 5788999888 35689999999999999999999999999999999999999876 99999999864332
Q ss_pred -ccEEEEcCccccCCCCCHHHHHHHHHH---------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 182 -GSYGFVERETTLIGSLTVREYLYYSAL---------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 182 -~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
+.++.+-|+..+...+||+|-+.|+.. +++.+..++...+||||||||.-||..|+++
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 457788899888889999999988631 2344444556689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+.++||||.++||...+.++|+.|+++++ -|+||+++.|+- ..+..++|.|+-|++|+++..|+++++.+
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999995 499999999876 47778999999999999999999999864
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=314.28 Aligned_cols=167 Identities=29% Similarity=0.491 Sum_probs=146.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCccEEEEcCccccCCCCCHHHHHHHHHH---------
Q 005423 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSAL--------- 208 (697)
Q Consensus 141 IiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------- 208 (697)
|+||||||||||||+|+|+.+|++ |+|.++|++... ..+.++|++|++.+++.+||+||+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999875 999999987532 23569999999999999999999987532
Q ss_pred ----------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEE
Q 005423 209 ----------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 277 (697)
Q Consensus 209 ----------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t 277 (697)
+++.+..++.+++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 23334456677899999999999999999999999999999999999999999999999864 8999998
Q ss_pred EecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 278 ih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++ .++..+||++++|++|+++..|+++++.+
T Consensus 158 THd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred eCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 8876 57889999999999999999999988754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.81 Aligned_cols=188 Identities=26% Similarity=0.327 Sum_probs=161.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.|.+ .+.+|+|||+++++||+++|+|||||||||||++|+|+++|++ |+|.+++. ..+
T Consensus 6 ~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 6899999999841 3579999999999999999999999999999999999998875 99999752 469
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH-------------------------------------------------------c
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL-------------------------------------------------------L 209 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~-------------------------------------------------------l 209 (697)
|||+|++.+++.+||.||+.+... +
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999999999999976311 0
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 210 QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 210 ~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
+++ ..++...+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. .|||+++|+. ..+.++|
T Consensus 153 gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~~~~~~~ 227 (556)
T PRK11819 153 RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-YFLDNVA 227 (556)
T ss_pred CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-HHHHhhc
Confidence 011 1245668999999999999999999999999999999999999999999999873 4888877765 6788999
Q ss_pred CEEEEEeCCeEE-EEeCchhhH
Q 005423 290 DRICLLSNGNTL-FFGETLACL 310 (697)
Q Consensus 290 D~v~vL~~G~iv-~~G~~~~~~ 310 (697)
|+|++|++|+++ +.|+.++..
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHH
Confidence 999999999986 788777643
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=334.89 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=158.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|++++...+++|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3699999999996421112469999999999999999999999999999999999999876 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHH----------HHHHcCCCcccccc------CCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLY----------YSALLQLPGFFCQR------KNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~----------~~~~l~l~~~~~~~------~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
++.++||+|++.+|.. |+++|+. ....+++.+...+. ...||||||||++|||||+.+|+|
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i 491 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI 491 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3569999999998864 7777742 11223333322222 256999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
|||||||++||+.++..+.+.+. .+..+|+|+|+++|++. ..+.||+|++|++|++++.
T Consensus 492 lilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 492 LLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999998664 56667899999999874 4578999999999999853
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.98 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=160.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|++++|. .+++|+|+|+++++||+++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3469999999999999999999999999999999999998875 99999873 3589
Q ss_pred EEcCccccCCCCCHHHHHHHHHH---------------------------------------------------cCCCcc
Q 005423 186 FVERETTLIGSLTVREYLYYSAL---------------------------------------------------LQLPGF 214 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~---------------------------------------------------l~l~~~ 214 (697)
|++|++.+++.+||+|++.+... ++++..
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999988889999999875310 112211
Q ss_pred c-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 215 F-CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 215 ~-~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
. ++...+|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||+++|+. ..+.++||+++
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~~d~i~ 223 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSVCTHMA 223 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhhcceEE
Confidence 1 235689999999999999999999999999999999999999999999864 588999977775 57889999999
Q ss_pred EEeCCeE-EEEeCchhhHH
Q 005423 294 LLSNGNT-LFFGETLACLQ 311 (697)
Q Consensus 294 vL~~G~i-v~~G~~~~~~~ 311 (697)
+|++|++ ++.|+.++..+
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 58888876653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=332.48 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++. .+|+|||+.+++||++||+||||||||||+|+|+|+.+|.. |+|.++|+++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHHH
Confidence 578888872 25999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHH----------------------HHcCCC-ccccccCCCCCHHHHHHHHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYS----------------------ALLQLP-GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~----------------------~~l~l~-~~~~~~~~~LSGGqrqRv~I 232 (697)
+..++|++|++ .+++.+|+.||+... ..+++. ...++++++|||||||||+|
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 24689999984 478888999987421 012343 34556778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998899999987776 588899999999999999999987654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=295.05 Aligned_cols=177 Identities=18% Similarity=0.186 Sum_probs=148.0
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
+|+|||+++++||+++|+||||||||||+|+|+|+.+|++ |+|. ++|... .+.+++.+++.+|++||+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHHH
Confidence 7999999999999999999999999999999999998875 9997 777532 123456788899999999
Q ss_pred HHHHHc----------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005423 204 YYSALL----------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267 (697)
Q Consensus 204 ~~~~~l----------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 267 (697)
.+.... +++...++..++||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 71 RMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 875331 1222234566899999999999999999999999999999999999999999988654
Q ss_pred HHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 268 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 268 ~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
.+ ++|+|+++|++ .++.++||++++|++|++++.|+.+++.+++.
T Consensus 151 ~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 151 LQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred hh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 43 35788877776 57888999999999999999999988876654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=313.26 Aligned_cols=192 Identities=25% Similarity=0.365 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--C--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--P-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~-- 180 (697)
.++++|+++.|+ ...+++|||+.+++||++||+|+||||||||+++|.|.++|++ |+|.++|++... +
T Consensus 4 ~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHHH
Confidence 589999999985 4579999999999999999999999999999999999999986 999999997542 2
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH----------------------HcCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA----------------------LLQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~----------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
+..||+|.|+..|++++||.||+.++. ..+++-..+++..+||-||||||.|-++|
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 246999999999999999999997653 22333344566789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
..+|++|||||||+-|-|....++++.|++|+++|+|||+++|- ..|+.++|||+.||.+|+++..-+
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999997776 579999999999999999987666
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=332.03 Aligned_cols=189 Identities=19% Similarity=0.194 Sum_probs=157.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|+. |+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6999999999962 2469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHH---------HHHHHcCCCccccc-----cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 180 PYGSYGFVERETTLIGSLTVREYL---------YYSALLQLPGFFCQ-----RKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l---------~~~~~l~l~~~~~~-----~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.++.++||+|++.+|+. |++||- .+...+++...... ....||||||||++|||||+.+|++|||
T Consensus 395 ~~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred HhhheEEEecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 24579999999998864 776651 11222333322211 1358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
|||||+||+.++..+.+.|.+.. +.++|+|+++|++ +..+.||++++|++|++++.
T Consensus 474 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999998765 4589999999987 34678999999999999876
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=366.59 Aligned_cols=197 Identities=21% Similarity=0.285 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+. ..+++|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLMD 1310 (1622)
T ss_pred cEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHHH
Confidence 5999999999953 23469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|.. |++|||.+.. .. ++|.. ..+....||||||||++|||||
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence 24679999999999965 9999996531 11 12322 2234468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|..+ .+ ..||||+||++|++++.|+++++++
T Consensus 1390 Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1390 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999975 4789999888874 34 4599999999999999999999864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=364.34 Aligned_cols=197 Identities=19% Similarity=0.288 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+. ..+++|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999952 23479999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcC-------CCcc----ccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQ-------LPGF----FCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~-------l~~~----~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|+. |++|||.+.. ..+ +|.. ..+....||||||||++|||||
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 24679999999999975 9999996421 111 2222 2234468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|++++.|+++++++
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 5789999888874 44 4599999999999999999998764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=316.71 Aligned_cols=199 Identities=25% Similarity=0.383 Sum_probs=169.6
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-- 179 (697)
.+..++|+||++.|+ .++++|+||||++.||+.+||+||||+||||++|+|.++...++ |.|.+||+++..
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s---GsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS---GSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC---ceEEEcCchHHHHH
Confidence 455799999999996 45789999999999999999999999999999999999987664 999999998643
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcccc----ccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFC----QRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~----~~~~~LSGGqrqRv~I 232 (697)
.++.||.||||..+|.+ |+..|++|+. .++.|+... ++.-.|||||||||+|
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence 24679999999999965 9988887741 234555433 3445699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++++|.+++|||.||+||..+..+|...|.++++..+||++ .|..+.. -.+|.|+++++|+|++.|..+|++.
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv-AHRLSTi--vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVV-AHRLSTI--VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE-eeeehhe--ecccEEEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999999999999999999999975555554 7876543 3699999999999999999988764
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=298.37 Aligned_cols=161 Identities=22% Similarity=0.281 Sum_probs=136.9
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH--
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-- 207 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-- 207 (697)
++.+++||+++|+||||||||||+++|+|+++|.. |+|.++|. .++|++|+......+||+|++.+..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCHHHHHHHHhhh
Confidence 34445899999999999999999999999999875 99999985 5899999987777889999986431
Q ss_pred -------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCE
Q 005423 208 -------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCT 273 (697)
Q Consensus 208 -------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~t 273 (697)
.+++....++.+.+|||||||||+||++|+.+|+++||||||++||+.++..+.+.|+++++ .|+|
T Consensus 89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168 (246)
T ss_pred ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 12333344567789999999999999999999999999999999999999999999999985 4899
Q ss_pred EEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 274 LLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 274 vi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
||+++|+. ..+..+||++++|+++..+
T Consensus 169 iiivsHd~-~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 169 AFVVEHDI-IMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EEEEeCCH-HHHHHhCCEEEEEcCCCee
Confidence 99988775 5788899999999765433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=287.44 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=147.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (697)
++++|+++.+. .+.++ ++|+++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+.... .+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 67899999984 23455 4999999999999999999999999999999998875 9999999875322 2458
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH--------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL--------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
+|++|+..+++..||.||+.+... +++.+..++..+.||||||||++|||+|+.+|++|+|||||+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999878788999999976421 233334456678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
|||+.++..+.+.|++..+.|+|+|+++|++. .+ +.+|-+
T Consensus 153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999887778899999888874 33 346654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=327.05 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=161.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|+++.. +.+|+|||+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 358999998752 259999999999999999999999999999999999998875 9999999875421
Q ss_pred ---CccEEEEcCcc---ccCCCCCHHHH-----HHHH--------------------HHcCCC-ccccccCCCCCHHHHH
Q 005423 181 ---YGSYGFVERET---TLIGSLTVREY-----LYYS--------------------ALLQLP-GFFCQRKNGLPCGERR 228 (697)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~e~-----l~~~--------------------~~l~l~-~~~~~~~~~LSGGqrq 228 (697)
++.++|++|+. .+++.+|+.+| +.+. ..+++. ...++.+.+|||||||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 23489999985 36777877665 3211 011232 2345677899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|+++..++++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999999998899999988876 5788999999999999999877653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=329.96 Aligned_cols=190 Identities=25% Similarity=0.319 Sum_probs=160.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||+++|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.+++. ..+
T Consensus 4 ~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IKV 70 (552)
T ss_pred EEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 5899999999841 2469999999999999999999999999999999999998875 99999752 469
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH---------------cCCC-c-----------------------------------
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL---------------LQLP-G----------------------------------- 213 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~-~----------------------------------- 213 (697)
+||+|++.+++.+||+||+.+... ...+ .
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999999999999976311 0000 0
Q ss_pred ---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 214 ---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 214 ---~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
..++....|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+. ..+..+||
T Consensus 151 ~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~~~~~~~d 226 (552)
T TIGR03719 151 RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-YFLDNVAG 226 (552)
T ss_pred CCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcC
Confidence 124556899999999999999999999999999999999999999999999876 35888877765 57888999
Q ss_pred EEEEEeCCeEE-EEeCchhhHH
Q 005423 291 RICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 291 ~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
++++|++|+++ +.|+.++..+
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHH
Confidence 99999999976 7788776544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=272.93 Aligned_cols=144 Identities=29% Similarity=0.406 Sum_probs=130.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.+.+ ..+++++|+.+++||+++|+||||||||||+++|+|+.++.. |+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG-----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEECC-----ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 367899988742 369999999999999999999999999999999999998875 99999985 4689
Q ss_pred EEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
|++| ||+||+||++|||+|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 67 ~~~~--------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 67 YFEQ--------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred EEcc--------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 9988 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++ ++|+|+++|++ +++.++||++++|++|+
T Consensus 115 ~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 115 EY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred Hc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 87 46899877775 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=333.46 Aligned_cols=168 Identities=29% Similarity=0.400 Sum_probs=143.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.++++||+|.|++ .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+... .
T Consensus 334 ~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 334 TLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDEL 406 (529)
T ss_pred eEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHHH
Confidence 5999999999963 2359999999999999999999999999999999999999976 999999987542 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcccc----ccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGFFC----QRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~~~----~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++||+|++.+|+. |++||+.++. . .++|+..+ +....||||||||++|||||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 3579999999999965 9999998741 0 12333222 33467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
+.+|+|||||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999864 578999988874
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=281.45 Aligned_cols=208 Identities=24% Similarity=0.352 Sum_probs=176.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||.+++.++ +.||++||++|++||+.|||||||||||||.++|+|.- ....++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHhH
Confidence 58999999998532 58999999999999999999999999999999999984 333467999999998632
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHc----------------------CCCc-cccccC-CCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL----------------------QLPG-FFCQRK-NGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------------~l~~-~~~~~~-~~LSGGqrqRv~IA~ 234 (697)
.+..+...+|.|.-++..++.+.|+.+... +++. ..+|.. .++|||||||..|+.
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ 157 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQ 157 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHH
Confidence 134577889999999999999988765432 1222 112222 689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc--CEEEEEeCCeEEEEeCchhhHHh
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~--D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
.++.+|++.|||||-||||..+-+.|-+.+++++++|.+++++||.. .+.++. |+|.||.+|+||..|.+ ++.++
T Consensus 158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 99999999999999999999999999999999999999999988875 566666 99999999999999999 88899
Q ss_pred hhhcCCCC
Q 005423 313 FSNAGFPC 320 (697)
Q Consensus 313 f~~~g~~~ 320 (697)
++..||.|
T Consensus 235 le~~gy~~ 242 (251)
T COG0396 235 LEEKGYDW 242 (251)
T ss_pred HHHhchHH
Confidence 99888865
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=327.70 Aligned_cols=190 Identities=24% Similarity=0.338 Sum_probs=162.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+. |+|.++|. ..
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 3699999999984 2469999999999999999999999999999999999998875 99999874 46
Q ss_pred EEEEcCccc--cCCCCCHHHHHHHHH--------------HcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 184 YGFVERETT--LIGSLTVREYLYYSA--------------LLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~e~l~~~~--------------~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
++|++|++. +++.+||.|++.+.. .+++. ...++.+.+|||||||||+|||+|+.+|+|||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999863 556789999985421 12332 3346678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
|||+|||+.++..+.+.|+++ +.|||+++|++ ..+.++||++++|++|+++ +.|+++++++
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999999887 35899888776 5788899999999999998 8888776543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.67 Aligned_cols=181 Identities=27% Similarity=0.399 Sum_probs=153.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+++ .+++|+|+|++++|||.+||+||||||||||+|+|+|+++|+. |+|.+||.+...
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999976 999999997543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcC-------CCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQ-------LPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~-------l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++. ..+ +|+. ..+....||||||||++||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 2457999999999996 59999997642 011 2221 123446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++. . .+.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA-L-AERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HHhCCEEEeC
Confidence 999999999999999999999999999999986 5789999899874 3 4679999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=275.40 Aligned_cols=175 Identities=21% Similarity=0.392 Sum_probs=154.0
Q ss_pred cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCccEEEEcCccccCC
Q 005423 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIG 195 (697)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~ 195 (697)
...++|+++|+.+++||..+|.||||||||||+|+++.+++|+. |++++.|++... .+.+++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 35689999999999999999999999999999999999999986 999999998643 2467999999999998
Q ss_pred CCCHHHHHHHHHHc-----------------CCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 196 SLTVREYLYYSALL-----------------QLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 196 ~lTV~e~l~~~~~l-----------------~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
. ||++|+.|...+ .+++ .++++..+||||||||++|+|-|..-|+||+||||||+||+.++
T Consensus 91 ~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred c-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 6 999999875433 2333 24556689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 258 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 258 ~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+|-++|.++. +++..++.++|++. +..+.||+++-+..|++
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 99999999997 67889999888874 66789999999999875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=360.01 Aligned_cols=197 Identities=22% Similarity=0.337 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+.. ...+|+|||++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred cEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999876 999999998653
Q ss_pred CCccEEEEcCccccCCCCCHHHHHH-HH-----------HHcC-------CCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLY-YS-----------ALLQ-------LPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~-~~-----------~~l~-------l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|+. |++|||. +. ..++ +|+.+ .+....||||||||++|||||
T Consensus 1358 LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1358 LRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred HHhcCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 24679999999999975 9999996 21 0111 22222 234467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. . ...||||++|++|++++.|+++++++
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 5789999888874 3 45699999999999999999998865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=299.80 Aligned_cols=206 Identities=25% Similarity=0.314 Sum_probs=170.2
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..+.++||++.+.... +...++++|||.+++||.+||+|+||||||-..+.++|++|.. ...+|+|.++|.+.-.
T Consensus 5 ~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 4689999999996432 4678999999999999999999999999999999999999863 3456999999987421
Q ss_pred -------CCccEEEEcCccc--cCCCCCHHHHH----HHH----------------HHcCCCc---cccccCCCCCHHHH
Q 005423 180 -------PYGSYGFVERETT--LIGSLTVREYL----YYS----------------ALLQLPG---FFCQRKNGLPCGER 227 (697)
Q Consensus 180 -------~~~~~~yv~Q~~~--l~~~lTV~e~l----~~~----------------~~l~l~~---~~~~~~~~LSGGqr 227 (697)
.-.+|+.++|++. |.|-.|+..-+ ... ...++++ .++.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 1146999999974 45555654443 221 1123332 35678899999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||.||.||+.+|++||.||||++||...+.+|+++|++|++ .|..+++++|+ ...+.+++|||+||.+|++|+.|.+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD-L~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD-LGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc-HHHHHHhhhhEEEEeccEEeecCcH
Confidence 999999999999999999999999999999999999999984 59999996665 5689999999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
++++.
T Consensus 243 ~~lF~ 247 (534)
T COG4172 243 ETLFA 247 (534)
T ss_pred HHHhh
Confidence 88763
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=279.76 Aligned_cols=153 Identities=23% Similarity=0.255 Sum_probs=133.3
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEc
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~ 188 (697)
.||++.|. .+.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.. ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57777773 34688885 8999999999999999999999999999999876 999999863 78888
Q ss_pred CccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005423 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268 (697)
Q Consensus 189 Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~ 268 (697)
|+.. ||||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++
T Consensus 68 q~~~-----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 68 QYID-----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ccCC-----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 8542 99999999999999999999999999999999999999999999998
Q ss_pred HcC-CEEEEEEecChHHHHhccCEEEEEeCCeEEEE--eCch
Q 005423 269 STG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETL 307 (697)
Q Consensus 269 ~~g-~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~--G~~~ 307 (697)
+++ .|+|+++|++ ..+.++||++++|+++-.++. |.+.
T Consensus 119 ~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 119 EEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 765 8999988875 577789999999998766544 5544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=358.93 Aligned_cols=197 Identities=19% Similarity=0.260 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+. ....+|+|||++|+|||.+||+|+||||||||+++|.|+++|.. |+|.+||.++..
T Consensus 1308 ~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~~ 1381 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLRE 1381 (1560)
T ss_pred eEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHHH
Confidence 5999999999953 23469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcC-------CCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQ-------LPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~-------l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|.. |++|||.... ..+ +|+.+ .+....||||||||++|||||
T Consensus 1382 LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred HHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 24679999999999965 9999996421 112 22222 233467999999999999999
Q ss_pred hhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|... ....||+|++|++|++++.|+++++++
T Consensus 1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 996 89999999999999999999999999864 4789999888863 446799999999999999999998864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=357.23 Aligned_cols=186 Identities=22% Similarity=0.355 Sum_probs=157.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~~~~---- 179 (697)
.++++||++.|+.. ..+++|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.++ |.++..
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 69999999999632 23469999999999999999999999999999999999999876 999995 565432
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------------------------------------
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------------------------------------- 208 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------------------------------------- 208 (697)
.++.+|||+|++.+|+ .||+||+.++..
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 2356999999999997 599999988521
Q ss_pred --------------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 209 --------------------L-------QLPGF----FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 209 --------------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+ ++|+. ..+....||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 0 11111 1234578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 258 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 258 ~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
..|.+.|+++++ +|+|+|+++|+.+ .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999985 5899999888874 44 689999999986
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=321.89 Aligned_cols=194 Identities=25% Similarity=0.361 Sum_probs=157.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 4699999999984 246999999999999999999999999999999999987651 13999999975321
Q ss_pred --CCccEEEEcCccccCC--CCCHHHHHHHH-----------------------HHcCCCc-cccccCCCCCHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIG--SLTVREYLYYS-----------------------ALLQLPG-FFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~--~lTV~e~l~~~-----------------------~~l~l~~-~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.++. ..++.+++.+. ..+++.. ..++++.+|||||||||+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 411 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLAL 411 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHH
Confidence 1246999999876543 24676665421 0123443 345667899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEecChHHHHh-ccCEEEEEeCCeEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~G~ 305 (697)
|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|+. .++.+ +||++++|++|++++.-.
T Consensus 412 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999999999999999998776 4688888876 46766 599999999999987654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.18 Aligned_cols=184 Identities=25% Similarity=0.287 Sum_probs=159.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.+.+ ..|+++|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46899999998742 35999999999999999999999999999999999999875 999986 25
Q ss_pred EEEEcCccccCCCCCHHHHHHHHH--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSA--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
++|++|+..+.+.+||+|++.+.. .+++.+..++.+.+|||||||||+|||+|+.+|+||||||||
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 899999988888899999997642 123334456778999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 250 YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+|||+.++..+.++|+++++ .|+|||+++|+. .++..+|||+++|+ |++...|..
T Consensus 482 ~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 482 AHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 99999999999999999986 489999988875 57888999999996 588877764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=275.32 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=131.1
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+++|+|+|+++++||+++|+||||||||||||+|.+ . +|+|.++|......+..++|++| .|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q----------~~ 69 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ----------LQ 69 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH----------HH
Confidence 3578999999999999999999999999999999963 2 39999998743333345888887 22
Q ss_pred HHHHHHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 005423 202 YLYYSALLQLPG-FFCQRKNGLPCGERRRVRIARELVMR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278 (697)
Q Consensus 202 ~l~~~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ti 278 (697)
+...+.+.. ..+++++.||||||||++|||+|+.+ |++|||||||++||+.++..+.+.|++++++|+|||+++
T Consensus 70 ---~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 70 ---FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred ---HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 333445544 35678899999999999999999999 999999999999999999999999999987899999988
Q ss_pred ecChHHHHhccCEEEEEeCCeE
Q 005423 279 NQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 279 h~~~~~i~~~~D~v~vL~~G~i 300 (697)
|++. ++ +.||++++|++|+.
T Consensus 147 H~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 147 HNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHH-HH-HhCCEEEEECCCCC
Confidence 8874 44 68999999966543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=320.72 Aligned_cols=187 Identities=21% Similarity=0.268 Sum_probs=157.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999884 3469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCcc-ccCCCCCHHHHHHHHHH-----------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERET-TLIGSLTVREYLYYSAL-----------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~e~l~~~~~-----------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
+||++|+. .+++.+||.||+.+... +++.. ..++.+.+|||||||||+|||+|+.+|++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999996 67888999999976421 22322 2356678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEE-EEeCchh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 308 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 308 (697)
|||||+|||+.++..+.+.|+++. | |||+++|++ ..+..+||++++|++ |+++ +.|+.++
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999873 4 788877765 578899999999985 7876 4555443
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=287.40 Aligned_cols=189 Identities=29% Similarity=0.375 Sum_probs=156.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ccEEEEc-CccccCCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVE-RETTLIGS 196 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~-Q~~~l~~~ 196 (697)
...+++|+||.+.+|++++++|+|||||||+||+|+|++.|++ |.|.+||......+ +++++|+ |...+.-.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 3469999999999999999999999999999999999999976 99999998643321 3466664 33333323
Q ss_pred CCHHHHHHH-------------------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 197 LTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 197 lTV~e~l~~-------------------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+.+.|.+.. ...+.+.+....+.+.||-|||.|+-||.+|+++|+||||||||=|||..++
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 334444322 2345566667788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 258 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 258 ~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
.+|.+.|++.. +++.||+.|+|.- +.+.++||||++|+.|+++|.|+.++..+.|.
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999998 4689999987765 68999999999999999999999998877654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=350.15 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+. ..+.+|+|||++|+|||.+||+|+||||||||+++|+|+++ . +|+|.+||.++..
T Consensus 1217 ~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred eEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999986 3 3999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcC-------CCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQ-------LPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~-------l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++||||++.+|+. |++|||.... .++ +|+.+ .+....||||||||++|||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 24679999999999975 9999996421 111 22222 223357999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||..+...|.+.|++.. +++|||+++|... . ...||+|++|++|++++.|+++++++
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~-t-i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE-A-LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999875 4789999888864 3 45699999999999999999998864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=319.57 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=156.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 3699999999884 2469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCcc-ccCCCCCHHHHHHHHHH-----------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERET-TLIGSLTVREYLYYSAL-----------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~e~l~~~~~-----------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
++|++|+. .+++.+||.|++.+... +++.. ..++.+..|||||||||+|||+|+.+|++||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999986 47888999999976421 22322 2355678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEE-EEeCch
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 307 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 307 (697)
|||||+|||+.++..+.+.|+++. + |||+++|++ ..+.++||++++|++ |+++ +.|+.+
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999983 3 788877765 578889999999986 5776 445543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=269.97 Aligned_cols=197 Identities=23% Similarity=0.305 Sum_probs=168.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~--- 179 (697)
..+.++||++++. ..++|+++||++.+||+-+|+|||||||||++++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4689999999994 4579999999999999999999999999999999999999875 9999999 44322
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------------CCCccccccCCCCCHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------------QLPGFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------------~l~~~~~~~~~~LSGGqrqR 229 (697)
.+..||--+|.+..|..+||+|||+.+... ++.+..++....||-||||+
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhh
Confidence 234588899999999999999999875321 22222233346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+.|+.-|+++|++|+||||++|+--+...+.-++|+.++. +.+|++ +.|+...+.+++|+|.||++|.+...|+.+++
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilV-VEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILV-VEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEE-EeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 9999999999999999999999999999999999999984 456776 55667899999999999999999999998886
Q ss_pred H
Q 005423 310 L 310 (697)
Q Consensus 310 ~ 310 (697)
-
T Consensus 234 ~ 234 (249)
T COG4674 234 Q 234 (249)
T ss_pred h
Confidence 4
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=321.23 Aligned_cols=190 Identities=21% Similarity=0.297 Sum_probs=159.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..+.++||++.|. .+.+|+|+|+.+++||++||+||||||||||||+|+|+.+|++ |+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------EE
Confidence 4699999999984 3469999999999999999999999999999999999998875 99999742 25
Q ss_pred EEEEcCcc--ccCCCCCHHHHHHHH-------------HHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 184 YGFVERET--TLIGSLTVREYLYYS-------------ALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 184 ~~yv~Q~~--~l~~~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+||++|+. .+.+..|+.+++... ..+.+.. ..++.++.|||||||||+||++|+.+|+||||||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 89999974 355667888776310 1233432 3456789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
||+|||+.+...+.+.|+++ .| |||+++|+. ..+..+||++++|++|+++ +.|+.++..+
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999987 34 888877765 6788999999999999997 8888877543
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=280.54 Aligned_cols=194 Identities=29% Similarity=0.406 Sum_probs=160.5
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---- 178 (697)
...+.++|+++.+. ++++|+|+|.+|++||-.+|+|||||||||||++++|..+|++ |.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcc
Confidence 34699999999884 5689999999999999999999999999999999999999875 99999997632
Q ss_pred --CCCccEEEEcCc--cccCCCCCHHHHHHHH------------------------HHcCCCccccccCCCCCHHHHHHH
Q 005423 179 --MPYGSYGFVERE--TTLIGSLTVREYLYYS------------------------ALLQLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 179 --~~~~~~~yv~Q~--~~l~~~lTV~e~l~~~------------------------~~l~l~~~~~~~~~~LSGGqrqRv 230 (697)
..++.||+|.-+ ....+..+|+|-+.-+ ..+.+.+..++.-..||-||||||
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 234678988643 2233344555554211 122333344566689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+++||+ +++..-+++++++++|++++.|.
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999865 78999999997 58889999999999999999874
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=289.74 Aligned_cols=184 Identities=23% Similarity=0.209 Sum_probs=148.6
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (697)
+|+++|.. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|. ++|.+..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 56677632 235899999 599999999999999999999999999999876 9996 7786542
Q ss_pred CC-------CccEEEEcCccccCCCCCHHHHHHHH--------------HHcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 179 MP-------YGSYGFVERETTLIGSLTVREYLYYS--------------ALLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 179 ~~-------~~~~~yv~Q~~~l~~~lTV~e~l~~~--------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.. ...++|++|+...++. ++.+++.+. ..+++.+..++.+..||||||||++|||+|+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 11 1236888888777763 666665432 1234445556677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
.+|++++|||||++||+.++..+.+.|++++++++|||+++|++ ..+.++||++++| +|++++.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEE-CCCCCcce
Confidence 99999999999999999999999999999988889999977775 5777899999999 46666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=261.57 Aligned_cols=151 Identities=32% Similarity=0.522 Sum_probs=134.6
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCc
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYG 182 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~ 182 (697)
++|+++.+++ +.+++++|+.+++||+++|+|+||||||||+++|+|++++.. |+|.++|.+... ..+
T Consensus 2 ~~~~~~~~~~-----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGG-----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCC-----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 5788888742 369999999999999999999999999999999999998865 999999986532 124
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 262 (697)
.++|++| |||||+||++|||+|+.+|++++|||||+|||..++..+.+
T Consensus 74 ~i~~~~q--------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~ 121 (157)
T cd00267 74 RIGYVPQ--------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121 (157)
T ss_pred ceEEEee--------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 5888888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 263 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 263 ~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
.|+++.+.++|+++++|++ .++...||++++|++|+
T Consensus 122 ~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 122 LLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999987788999988875 57778899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=263.48 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=167.7
Q ss_pred eEEEEeEEEEEecc----cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++|+++++... ++....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|.+||++...
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 46788898887543 1234569999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCccEEEEcCccc--cCCCCCHHHHHHHHHH--------------------cC-CCccccccCCCCCHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSAL--------------------LQ-LPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~--------------------l~-l~~~~~~~~~~LSGGqrqRv~I 232 (697)
..+.+-.++||+. +.|.+.+.+.|..... .+ +|+..+-+++.||-||||||++
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 2357889999874 4455555444433211 11 3555566778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||+.+|+|+|.||...+||...+.+++++.-+|++ .|.+.|.+..| ...+.+++|+|+||++|++|+.|++.+++.
T Consensus 161 ARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh-lG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 161 ARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH-IGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech-hhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 9999999999999999999999999999999999985 58999986554 578999999999999999999999998864
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=294.11 Aligned_cols=198 Identities=24% Similarity=0.340 Sum_probs=168.3
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
...+.|+++++.|. ..+++|+++|+++.+|+.+||+||||+||||++++|-+.+.+++ |.|.++|+++..
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 45689999999999999999999999999999999999998876 999999998643
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcccc----ccCCCCCHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFC----QRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~----~~~~~LSGGqrqRv~IA 233 (697)
.++.||.||||..||.+ |...|+.|+. ...+|+.++ ++.-.|||||||||+||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 24679999999999965 9999997752 112444333 23346999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++.+|+||++||.||+||..+.++|...|+++. .|+|.+++.|..+. + --+|+|+||++|+|++.|.-++++.
T Consensus 412 r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999999999999998 46666666787653 3 3599999999999999999988765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=316.28 Aligned_cols=187 Identities=22% Similarity=0.291 Sum_probs=156.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++||++.|. .+.+|+|+|+.+++|++++|+||||||||||||+|+|+++|+. |+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----cE
Confidence 4689999999884 3469999999999999999999999999999999999998875 99998 432 25
Q ss_pred EEEEcCcc-ccCCCCCHHHHHHHHHH-----------------cCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERET-TLIGSLTVREYLYYSAL-----------------LQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~e~l~~~~~-----------------l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
+||++|+. .+++.+||.|++.+... +.+. ...++.++.|||||||||+||++|+.+|++||
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999975 58888999999976321 1121 12345678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe-CCeEEE-EeCchh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLF-FGETLA 308 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~-~G~iv~-~G~~~~ 308 (697)
|||||+|||..++..+.+.|+++ +.|||+++|+. ..+..+||++++|+ +|+++. .|+-++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 99999999999999999999886 45888877764 57888999999998 899865 444443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=342.54 Aligned_cols=191 Identities=26% Similarity=0.352 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.++.+ ..+++|+|+|+++++||.++|+||||||||||+++|+|.++|.. |.+. ..++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~-------~~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSV-------VIRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEE-------EecCcE
Confidence 59999999999632 23579999999999999999999999999999999999999864 6552 123579
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL------------L-------QLPGF----FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+++ .|++|||.|+.. + .+|+. ..++...||||||||++|||||..+|+
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999999996 599999987521 1 12322 223456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+|||||||+||+.++.++++. ++.+ .+++|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999988765 4443 36789999999874 457899999999999999999888753
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=314.46 Aligned_cols=189 Identities=23% Similarity=0.345 Sum_probs=153.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|.. |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46999999999842 2369999999999999999999999999999999999999875 99998753 35
Q ss_pred EEEEcCccccCCCCCHHHHHHH--H---------------HHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 184 YGFVERETTLIGSLTVREYLYY--S---------------ALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~--~---------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
++|++|+.. ..+++.++... . ..+++.+ ...+.+..|||||||||+|||+|+.+|++|||
T Consensus 574 igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 574 MAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred EEEEecccc--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999752 33444444221 1 1223332 34567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
||||+|||+.++..+++.|++. .| |||+++|++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 652 DEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 652 DEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred cCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999998888765 34 888877775 5788899999999999998 7787665443
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=266.32 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=163.1
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----- 181 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----- 181 (697)
.++|+.+.+.......+++|+++|+++..|+++.|+|.||||||||+++|+|.+++++ |+|.++|.++....
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHHh
Confidence 4566666665444456789999999999999999999999999999999999999986 99999999864321
Q ss_pred ccEEEEcCcc--ccCCCCCHHHHHHHHHHc---------------------------CCCccccccCCCCCHHHHHHHHH
Q 005423 182 GSYGFVERET--TLIGSLTVREYLYYSALL---------------------------QLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~e~l~~~~~l---------------------------~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
..++-|+|++ ..++.+|+.||+..+..- ++...++.+..-|||||||-|++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 3467789986 578999999999775421 12223344556799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+.|-++.|+||+|||=|++|||.++..|++.-.++.+ .+.|.++++|+. ..+.++-+|.++|++|+||.+-.
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEcc
Confidence 9999999999999999999999999999999999974 567888878875 57889999999999999997643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=339.40 Aligned_cols=190 Identities=24% Similarity=0.344 Sum_probs=159.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCcc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~-G~I~i~G~~~~~~~~~ 183 (697)
.++++|+++.++.. ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 59999999999632 2356999999999999999999999999999999999999874 5 799864 46
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHH------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSAL------------L-------QLPGF----FCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
++||+|++.++. .|++|||.|+.. + .+|+. ..++...|||||||||+|||||..+|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999999996 599999987521 1 23322 23445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+|||||||+||+.++.++++ .++.+. +|+|+|+++|+.. ....||+|++|++|++++.|+.+++.+
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998865 555553 5789999999973 567899999999999999999888753
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-32 Score=314.32 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=146.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.+ |+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCcE
Confidence 5899999998752 2469999999999999999999999999999999999998875 9998864 3569
Q ss_pred EEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccccc---------cCCCCCHHHHHHHHHHHH
Q 005423 185 GFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFCQ---------RKNGLPCGERRRVRIARE 235 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~~---------~~~~LSGGqrqRv~IA~a 235 (697)
+||+|++.+++. |++||+.+.. .+++.+..++ ....||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999998876 9999997631 0122221122 236899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
|+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999999999999999999999998876 3889999899875 347899999997
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=310.71 Aligned_cols=184 Identities=21% Similarity=0.323 Sum_probs=145.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
+.++||+++|. .+.+|+||||.|++||++||+||||||||||||+|+|+++|+. |+|.++|.. .++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~~------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGNW------QLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCCC------EEE
Confidence 68999999984 3579999999999999999999999999999999999998875 999998742 356
Q ss_pred EEcCccccCCCCCHHHHHH------------------------H----------------------HHHcCCC-cccccc
Q 005423 186 FVERETTLIGSLTVREYLY------------------------Y----------------------SALLQLP-GFFCQR 218 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~------------------------~----------------------~~~l~l~-~~~~~~ 218 (697)
|++|+.... ..|+.+.+. + ...+++. ...++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 666643222 123222110 0 0112232 234566
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 219 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
...|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++++|++|
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999998875 46888877765 5788999999999999
Q ss_pred eEE-EEeCchh
Q 005423 299 NTL-FFGETLA 308 (697)
Q Consensus 299 ~iv-~~G~~~~ 308 (697)
+++ |.|+.+.
T Consensus 223 ~i~~~~g~~~~ 233 (638)
T PRK10636 223 SLFEYTGNYSS 233 (638)
T ss_pred EEEEecCCHHH
Confidence 996 5666544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=336.23 Aligned_cols=190 Identities=21% Similarity=0.290 Sum_probs=162.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++.. |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 6999999999853 13469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH------------cC-------CCc----cccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL------------LQ-------LPG----FFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~------------l~-------l~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+++ .||+||+.++.. +. +|. ...++...||||||||++|||||+.+|+
T Consensus 702 ~yv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 702 AYVPQQAWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEcCCccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998874 699999986421 11 121 1234567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++||||||+||+.++..+.+.+.+.. .+++|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999999999997642 35789999999874 34 5599999999999999999888753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=308.25 Aligned_cols=185 Identities=20% Similarity=0.239 Sum_probs=145.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||+++|. .+.+|+||||.+++||+++|+||||||||||||+|+|+.+|+. |+|.++|.. .+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~~------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQDL------IV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCCC------EE
Confidence 489999999984 3469999999999999999999999999999999999998875 999998731 24
Q ss_pred EEEcCccccCCCCCHHH------------------------------HHHHHH-----------------------HcCC
Q 005423 185 GFVERETTLIGSLTVRE------------------------------YLYYSA-----------------------LLQL 211 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e------------------------------~l~~~~-----------------------~l~l 211 (697)
+|++|.+......+|.+ ++.... .+++
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 45554332111122222 221100 1112
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
. .++....|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|+. ..+.++||+
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l~~~~d~ 222 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFIRNMATR 222 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHHHHhcCe
Confidence 1 245678999999999999999999999999999999999999999999999873 4888877765 578889999
Q ss_pred EEEEeCCeEE-EEeCchhh
Q 005423 292 ICLLSNGNTL-FFGETLAC 309 (697)
Q Consensus 292 v~vL~~G~iv-~~G~~~~~ 309 (697)
|++|++|+++ +.|+.++.
T Consensus 223 i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEECCEEEEecCCHHHH
Confidence 9999999997 45776554
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=263.46 Aligned_cols=200 Identities=21% Similarity=0.235 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecc-------------------cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 005423 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (697)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~ 165 (697)
.+.++||++.++.. +.....+|+||||++++||.++|+|+||||||||||+|+|.++|+.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 46777887776421 1123569999999999999999999999999999999999999986
Q ss_pred ceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHH
Q 005423 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 166 ~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGq 226 (697)
|+|.++|+-....--.. .+-|++|.+||+.+...+ .+.++.+.+.+.+|-||
T Consensus 82 --G~v~v~G~v~~li~lg~-------Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM 152 (249)
T COG1134 82 --GKVKVTGKVAPLIELGA-------GFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGM 152 (249)
T ss_pred --ceEEEcceEehhhhccc-------CCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHH
Confidence 99999997432111112 345678999999875432 23445667779999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+-|++.|.|...+|+|||+||-.+-.|+.-++.-.+.++++.++++|+|+++|++ ..+.++||++++|++|++.+.|++
T Consensus 153 ~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 153 YARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred HHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCH
Confidence 9999999999999999999999999999999999999999988889999988776 589999999999999999999999
Q ss_pred hhhHHhhhh
Q 005423 307 LACLQHFSN 315 (697)
Q Consensus 307 ~~~~~~f~~ 315 (697)
+++.++++.
T Consensus 232 ~~vi~~Y~~ 240 (249)
T COG1134 232 EEVIPAYEE 240 (249)
T ss_pred HHHHHHHHH
Confidence 999987765
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=248.13 Aligned_cols=198 Identities=26% Similarity=0.335 Sum_probs=157.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE--- 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~---~~--- 178 (697)
.+.++++++.|. ..+.-+||||.+.|||+++|+|+|||||||||++|+++++|+. |+|.+.-.+ .+
T Consensus 6 LL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHhh
Confidence 578899998884 3457899999999999999999999999999999999999986 999886432 11
Q ss_pred ---C-----CCccEEEEcCccc--cC----CCCCHHHHHHHH-----------H--H---cCC-CccccccCCCCCHHHH
Q 005423 179 ---M-----PYGSYGFVERETT--LI----GSLTVREYLYYS-----------A--L---LQL-PGFFCQRKNGLPCGER 227 (697)
Q Consensus 179 ---~-----~~~~~~yv~Q~~~--l~----~~lTV~e~l~~~-----------~--~---l~l-~~~~~~~~~~LSGGqr 227 (697)
. .+..-|+|.|++. +- ....+-|-+.-. + + ..+ +...+..++.+|||++
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 0 1123589999863 21 122344443211 1 1 112 2234677899999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||+.|||-|++.|+++|+||||-|||...+..++++++.|. +-|.++++++|+. ..+.-++||.++|++|++++.|-+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEeccccc
Confidence 99999999999999999999999999999999999999998 4588888877764 566778999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
+.+++
T Consensus 237 DrvLD 241 (258)
T COG4107 237 DRVLD 241 (258)
T ss_pred ccccc
Confidence 88765
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=327.59 Aligned_cols=184 Identities=24% Similarity=0.388 Sum_probs=154.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++. .+++|+|+|+++++||+++|+|||||||||||++|+|++++.. |+|.++| .++
T Consensus 429 ~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~ia 490 (1490)
T TIGR01271 429 LFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RIS 490 (1490)
T ss_pred ccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EEE
Confidence 556665543 2469999999999999999999999999999999999999875 9999988 389
Q ss_pred EEcCccccCCCCCHHHHHHHHHH------------cCC-------Cc----cccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 186 FVERETTLIGSLTVREYLYYSAL------------LQL-------PG----FFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~------------l~l-------~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
||+|++.+++. ||+||+.|+.. +++ +. ...++...|||||||||+|||||+.+|++
T Consensus 491 yv~Q~~~l~~~-Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i 569 (1490)
T TIGR01271 491 FSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL 569 (1490)
T ss_pred EEeCCCccCCc-cHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 99999999874 99999987421 111 11 12334578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+||||||+|||+.++..+.+. ++++. +|+|+|+++|++. .+ ..||+|++|++|+++..|+.+++.+
T Consensus 570 llLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 570 YLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999984 66665 5899999999875 44 5699999999999999999888753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=300.42 Aligned_cols=177 Identities=22% Similarity=0.210 Sum_probs=144.5
Q ss_pred EEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC
Q 005423 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM 179 (697)
Q Consensus 111 ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~ 179 (697)
+++.|. ....+|++++ .+++||+++|+||||||||||+|+|+|+++|+. |+|. ++|++...
T Consensus 79 ~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHHH
Confidence 555552 1235899999 999999999999999999999999999999876 9997 88876421
Q ss_pred -------CCccEEEEcCc----cccCCCCCHHHHHHHH----------HHcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -------PYGSYGFVERE----TTLIGSLTVREYLYYS----------ALLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -------~~~~~~yv~Q~----~~l~~~lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
....+++.+|. +.++. .||.|++... ..+++....++...+|||||||||+||++|+.
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 11234555554 33332 3999988542 13455555678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+. .++..++|++++|++|
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999988 99999977775 5788999999999864
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=312.84 Aligned_cols=204 Identities=23% Similarity=0.353 Sum_probs=180.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..+..+|+++.+... +.+++++|+.|++||+.+++|+|||||||++|+|.|..+|++ |++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 458899999888532 129999999999999999999999999999999999999986 999999987543
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHHcC-------------------CCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ-------------------LPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~-------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+||+||+|.+.+.+|.+|+|.+.++++ +.+..++..+.+|||+|||+++|.||+.
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence 3567999999999999999999998876543 2233455668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
+|++++|||||+|+||.+++.+.+++++++++|+.||+|+|. .+|...+|||+.+|.+|++...|+++++...|-.
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 999999999999999999999999999999988888987665 5799999999999999999999999999876643
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=241.95 Aligned_cols=172 Identities=24% Similarity=0.374 Sum_probs=147.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||+...+ ...+|.|+|++|.+||++.||||||||||||+..+.|.+.+.-..+|++.+|++.... .+
T Consensus 2 ~l~l~nvsl~l~-----g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRLP-----GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecCC-----CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 368899987653 4579999999999999999999999999999999999988765678999999997643 35
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
+++|..+||+.+||+++|.+||.|+. ..++.+..++.+.+||||||-||++-|+|+..|+.+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 78999999999999999999997742 123555667788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEecC
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQS 281 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~tih~~ 281 (697)
+||||+|.||..-+.++.+.+-. +.+.|.-+|.++|+.
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999988754 446788777777764
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=248.94 Aligned_cols=170 Identities=25% Similarity=0.319 Sum_probs=146.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (697)
++.+|++..- ....++.++||++.+||.+-|.||||||||||||+|+|+..|.+ |+|.++|.+++..+
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4556666542 45689999999999999999999999999999999999999986 99999998765433
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
..+-|+-.++.+=+.+||.|||.|-.. .++.+..+.+..+||-||||||+|||-+++.+++-||
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 356777788888889999999998543 3344555667789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
|||+++||......+-.++..-+++|..||.++|||..
T Consensus 155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999888889999999999974
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=319.48 Aligned_cols=176 Identities=24% Similarity=0.344 Sum_probs=147.6
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|.. |+|.++ +.++|++|++.++ ..||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999998875 999874 4599999999887 469999
Q ss_pred HHHHHHH------------cC-------C----CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 202 YLYYSAL------------LQ-------L----PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 202 ~l~~~~~------------l~-------l----~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
|+.+... ++ + .....++...|||||||||+|||||+.+|+|+||||||++||+.++.
T Consensus 740 nI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~ 819 (1560)
T PTZ00243 740 NILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819 (1560)
T ss_pred HHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 9976310 11 1 11224566889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+++.+.....+|+|+|+++|++. .+ +.||+|++|++|++++.|+.+++.+
T Consensus 820 ~i~~~~~~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 820 RVVEECFLGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHHHHh
Confidence 988754322335899999899874 34 6799999999999999999888653
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=281.16 Aligned_cols=183 Identities=27% Similarity=0.363 Sum_probs=153.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.+. .+.+++|+|+++.+|+.+||||+||||||||||+|+|...|+. |+|...+. ..+
T Consensus 3 ~i~~~~ls~~~g-----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAYG-----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEeeC-----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 589999999983 5689999999999999999999999999999999999998876 99987542 358
Q ss_pred EEEcCccccCCCCCHHHHHHHHH-------------------------------------------------HcCCCccc
Q 005423 185 GFVERETTLIGSLTVREYLYYSA-------------------------------------------------LLQLPGFF 215 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~-------------------------------------------------~l~l~~~~ 215 (697)
+|++|++.+.+..||.+.+.-+. .++.+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999998889988764321 0112222
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
++...+||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|+++| ++..+-+.|++|+-+
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSH-DR~FLd~V~t~I~~l 223 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSH-DRYFLDNVATHILEL 223 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeC-CHHHHHHHhhheEEe
Confidence 4566899999999999999999999999999999999999999999999864 45 8888555 567899999999999
Q ss_pred eCCeEE-EEeCc
Q 005423 296 SNGNTL-FFGET 306 (697)
Q Consensus 296 ~~G~iv-~~G~~ 306 (697)
+.|++. |.|.-
T Consensus 224 d~g~l~~y~Gny 235 (530)
T COG0488 224 DRGKLTPYKGNY 235 (530)
T ss_pred cCCceeEecCCH
Confidence 999875 44443
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=256.42 Aligned_cols=180 Identities=22% Similarity=0.209 Sum_probs=123.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHH-HHHHcCC--------CCCC-CceeEEEECCEeCCCCCccEEEEcCcc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRL--------PHSA-RMYGEVFVNGAKSEMPYGSYGFVERET 191 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl-~~L~G~~--------~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~ 191 (697)
...+|++||+++++||+++|+||||||||||+ ..+...- ++.. ...|.+.... .........++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPD-VDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccc-cccccCCCceEEecCC
Confidence 34699999999999999999999999999996 4433100 0000 0001110000 0000001123333332
Q ss_pred c--cCCCCCHH---HHHHH----------------HHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeC
Q 005423 192 T--LIGSLTVR---EYLYY----------------SALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRP--HVLFIDE 247 (697)
Q Consensus 192 ~--l~~~lTV~---e~l~~----------------~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDE 247 (697)
. +.+..+|. +...+ ...+++.. ..++++++|||||||||+|||+|+.+| ++|||||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE 165 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE 165 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 1 12233332 11111 11234443 356788999999999999999999998 5999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEe
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 304 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G 304 (697)
||+|||+.++..+.+.|++++++|.|+|+++|++. ++ +.||++++| ++|+||++|
T Consensus 166 Pt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999999888999999999874 45 689999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=294.22 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=143.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..+.++|++++|. .+.+|+|+|+++.+|+.+||+|+||||||||||+|+|+...+....|+|.+.++.....
T Consensus 176 ~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4599999999994 34699999999999999999999999999999999996411111238887654321000
Q ss_pred ----------------CccEEEEcCccccCCC----------------CCHHHHH----H-H---------------HHH
Q 005423 181 ----------------YGSYGFVERETTLIGS----------------LTVREYL----Y-Y---------------SAL 208 (697)
Q Consensus 181 ----------------~~~~~yv~Q~~~l~~~----------------lTV~e~l----~-~---------------~~~ 208 (697)
...+++++|++.+... ..+.+.+ . + ...
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0124556654322110 0000111 0 0 011
Q ss_pred cCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh
Q 005423 209 LQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287 (697)
Q Consensus 209 l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~ 287 (697)
++++ ...++....|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+++|+. ..+.+
T Consensus 331 lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~-~~l~~ 406 (718)
T PLN03073 331 LSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR-EFLNT 406 (718)
T ss_pred CCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHH
Confidence 2332 2235667899999999999999999999999999999999999999999999886 67899877764 67888
Q ss_pred ccCEEEEEeCCeEE-EEeCchh
Q 005423 288 LFDRICLLSNGNTL-FFGETLA 308 (697)
Q Consensus 288 ~~D~v~vL~~G~iv-~~G~~~~ 308 (697)
+||++++|++|+++ |.|+.++
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHH
Confidence 99999999999996 6666554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=294.93 Aligned_cols=199 Identities=23% Similarity=0.343 Sum_probs=169.0
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
...++++|+++.|.. +...+|||||++|+|||.+||+|..|||||||+++|-++..+.+ |+|.|||.++..
T Consensus 1136 ~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGL 1209 (1381)
T ss_pred CCeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccH
Confidence 346999999999953 35689999999999999999999999999999999999998865 999999998643
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHH----H--------HHc-------CCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYY----S--------ALL-------QLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~----~--------~~l-------~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.+++++.+||||.+|. .|||.||.= + ..+ ++|. ...+....+|-||||-++|||
T Consensus 1210 ~dLRsrlsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred HHHHhcCeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHH
Confidence 3578999999999995 599999831 1 011 2232 334455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++.+||+|||+|++.|+++-..|.++||+-- +++|||.+.|.-. .+. -+|||+||++|+++++|+|.++++
T Consensus 1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999999999999999854 4789998778764 443 499999999999999999999876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=294.98 Aligned_cols=192 Identities=24% Similarity=0.352 Sum_probs=165.0
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|.+++.+.. ...+.|+|||+.+++|+++||+|+-|||||+||.+|.|-++.. +|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS------- 583 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe-------
Confidence 3468999999987542 3445999999999999999999999999999999999999865 499999985
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH------------cCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL------------LQLPGF-----------FCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++||+|++-++. .||+||+.|+.. |.|..+ ..++.-.||||||||+++|||+-++
T Consensus 584 -iaYv~Q~pWI~n-gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 584 -VAYVPQQPWIQN-GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred -EEEeccccHhhC-CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 899999999985 599999988642 222211 2345578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|.+||.|.|++|+++..+|.+-.-+..-+++|+|++|||- +..+.||.|++|++|+|++.|+.+|+.
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 999999999999999999998877665555689999999974 677889999999999999999999987
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=232.15 Aligned_cols=189 Identities=21% Similarity=0.307 Sum_probs=149.7
Q ss_pred eEEEEeEEEEEecc--cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 005423 105 SVVWKDLTVTIKGK--RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE-- 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~--~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~--~~-- 178 (697)
.+..+|+++++.-. ..-..++|+|||+.++.||++++=||||+|||||||+|-|-+.|++ |+|.+.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhh
Confidence 57888888777422 2234579999999999999999999999999999999999998886 999985432 11
Q ss_pred ---------CCCccEEEEcCccccCCCCCHHHHHHH-------------------HHHcCCCcc-ccccCCCCCHHHHHH
Q 005423 179 ---------MPYGSYGFVERETTLIGSLTVREYLYY-------------------SALLQLPGF-FCQRKNGLPCGERRR 229 (697)
Q Consensus 179 ---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~-------------------~~~l~l~~~-~~~~~~~LSGGqrqR 229 (697)
..++.+|||.|--...|..+..|...- -..+++|+. ..-.+...||||+||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR 160 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR 160 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee
Confidence 123568999998777776554444322 123455553 345678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
|.|||.++.+-+||+|||||+.||..++..+++++++-+..|..+|=+-| +.+.-...|||++-+..
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH-Deevre~vadR~~~~~~ 227 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH-DEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec-cHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999998888988887555 44455568999998753
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-28 Score=240.74 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=126.7
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CCccEEEEcCccccCCC--
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS------ARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGS-- 196 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~------~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~-- 196 (697)
+++++.+.+| +++|+||||||||||+++|+|++++. ....|++.++|++... ..+.+++|+|++..+..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 6788899999 99999999999999999999997653 1123577777765422 23579999998866411
Q ss_pred --CCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 197 --LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 197 --lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
..+.|.+.. .+..++.+..||||||||++||++|+ .+|++++|||||+|||+..+..+.+.|+++++
T Consensus 93 ~~~~~~~~l~~------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~- 165 (197)
T cd03278 93 SQGDVSEIIEA------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK- 165 (197)
T ss_pred ehhhHHHHHhC------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-
Confidence 123333322 44456778999999999999999997 46699999999999999999999999999975
Q ss_pred CCEEEEEEecChHHHHhccCEEEEEe
Q 005423 271 GCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 271 g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
+.|||+++|++. . .+.||+++.+.
T Consensus 166 ~~tiIiitH~~~-~-~~~~d~v~~~~ 189 (197)
T cd03278 166 ETQFIVITHRKG-T-MEAADRLYGVT 189 (197)
T ss_pred CCEEEEEECCHH-H-HhhcceEEEEE
Confidence 688999888864 4 46899999996
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=245.72 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=140.0
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-----c---CC--CCC--CCce------eEEEECCEeCCC-CC--
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-----G---RL--PHS--ARMY------GEVFVNGAKSEM-PY-- 181 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-----G---~~--~~~--~~~~------G~I~i~G~~~~~-~~-- 181 (697)
...|+||+..++.|++++|.|+||||||||++.+. . .. .+. .... --|.++..++.. ++
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998552 1 10 011 0111 235666544311 00
Q ss_pred ----------------------------ccEEEEcCccccCCCCCHHHHHHHHHH-------------cCCCc-cccccC
Q 005423 182 ----------------------------GSYGFVERETTLIGSLTVREYLYYSAL-------------LQLPG-FFCQRK 219 (697)
Q Consensus 182 ----------------------------~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l~~-~~~~~~ 219 (697)
..+.|..++......+||.|++.|... +++.. ..++..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~ 167 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPA 167 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcc
Confidence 013455555555678999999977532 34544 356778
Q ss_pred CCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE-
Q 005423 220 NGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL- 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL- 295 (697)
..||||||||++||++|+.+ |+++||||||+|||+.....+++.|++++++|.|||+++|++. .+ +.||++++|
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lg 245 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLG 245 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEec
Confidence 99999999999999999996 7999999999999999999999999999988999999888874 44 579999999
Q ss_pred -----eCCeEEEEeCc
Q 005423 296 -----SNGNTLFFGET 306 (697)
Q Consensus 296 -----~~G~iv~~G~~ 306 (697)
++|++++.|++
T Consensus 246 p~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 246 PEGGDGGGQVVASGTP 261 (261)
T ss_pred CCcCCCCCEEEEeCCC
Confidence 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-28 Score=226.83 Aligned_cols=122 Identities=37% Similarity=0.574 Sum_probs=103.1
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCccEEEEcCccccCCCCCHH
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (697)
|+|||+++++||+++|+|+||||||||+++|+|..++.. |+|.++|.+... .++.++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS---GSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE---EEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccc---cccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999998754 999999998754 235799999999999999999
Q ss_pred HHHHH------HHHcCCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 201 EYLYY------SALLQLPGF----FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 201 e~l~~------~~~l~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
|+..- ...+++... .++....|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 98421 122333222 233448999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=262.55 Aligned_cols=191 Identities=26% Similarity=0.298 Sum_probs=155.2
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
....++++|+++.|.+ .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|.+ |+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~---G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCC---ceEEeCCc------
Confidence 3457999999999853 2579999999999999999999999999999999999988764 99987432
Q ss_pred ccEEEEcCcc-ccCCCCCHHHHHHHHH-------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 182 GSYGFVERET-TLIGSLTVREYLYYSA-------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 182 ~~~~yv~Q~~-~l~~~lTV~e~l~~~~-------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
-.+||..|+. .+.+..|+.|++.-.. .+.+++ ...++.+.||||||.||.+|+.++.+|.+||||
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD 464 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD 464 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Confidence 3589999986 4457779999885432 122222 234566899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEE-eCchhhH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLACL 310 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~~ 310 (697)
|||++||..+...+.+.|.+.. .|||+++|+ ...+..+|++++++.+ ++..+ |.-++..
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDFE---GTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhCC---CeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999998864 478876665 5689999999999998 55444 6655443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=237.54 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=124.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC----------------CCCC---Ccee--EEEECCEeCC--
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL----------------PHSA---RMYG--EVFVNGAKSE-- 178 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~----------------~~~~---~~~G--~I~i~G~~~~-- 178 (697)
.+.++++++ |++++|+||||||||||+++|++++ .++. ...+ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 346777876 7899999999999999999998442 2221 0112 5555553211
Q ss_pred ---C---CCccEEEEcCccccCC-CCCHHHHHHHHHHcCCCc--------------------cccccCCCCCHHHHHHHH
Q 005423 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPG--------------------FFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~e~l~~~~~l~l~~--------------------~~~~~~~~LSGGqrqRv~ 231 (697)
. ..+.+++++|+..+.+ ..|..|...+...+++.. ..++.+..||||||||++
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~ 168 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVA 168 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHH
Confidence 1 1245899999887776 457777766665554432 123566899999999999
Q ss_pred HHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 232 IARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 232 IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
|||+|+. +|+++|+||||+|||+.++..+++.|+++++ ++++|+++|. .++.++||++++|.
T Consensus 169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~--~~~~~~~d~i~~l~ 234 (243)
T cd03272 169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR--PELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC--HHHHhhCCEEEEEE
Confidence 9999974 5899999999999999999999999999875 7777775554 36789999999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=249.00 Aligned_cols=192 Identities=23% Similarity=0.348 Sum_probs=159.9
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (697)
.+.++++|++.. ..++||||++++||+++|-|-=|||+|-|+++|.|..++.+ |+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~---G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCC---ceEEECCEEccCCCH
Confidence 345778887642 25899999999999999999999999999999999877654 9999999975432
Q ss_pred ----CccEEEEcCc---cccCCCCCHHHHHHHHHHcCCCc--c-----------------------ccccCCCCCHHHHH
Q 005423 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLPG--F-----------------------FCQRKNGLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~l~l~~--~-----------------------~~~~~~~LSGGqrq 228 (697)
...++||+.| ..++..++|.+|+.++...+... . .+.....||||.+|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 2358999976 56888999999997763222110 0 12234789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
+|.|||.|..+|+||||||||.|.|.-+..+|.+++++|+++|++||++++. .+|+..+||||+||++|+++..=+.+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-LPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999996555 57999999999999999998754444
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=225.12 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=130.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEc-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE----eCCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----KSEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~-~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~----~~~~ 179 (697)
.++++|+. .|.+ -++++|... +|++++|+||||||||||+++|++.+-.. ..+....+.. ....
T Consensus 5 ~i~l~nf~-~y~~--------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE--------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCC--------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 46777766 4421 145566543 58999999999999999999999643111 1122222210 1112
Q ss_pred CCccEEEEcCcccc------CCCCCHHHHHHHH--HHcCCCccccccCCCCCHHHHHHHHHHHHHhh----------CCC
Q 005423 180 PYGSYGFVERETTL------IGSLTVREYLYYS--ALLQLPGFFCQRKNGLPCGERRRVRIARELVM----------RPH 241 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l------~~~lTV~e~l~~~--~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~----------~P~ 241 (697)
....+++++|++.. ...++..+..... ...++....++.+..||||||||++|||+|+. +|+
T Consensus 74 ~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~ 153 (213)
T cd03279 74 DTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLE 153 (213)
T ss_pred ccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCC
Confidence 23457888876533 2344544443321 11223344567788999999999999999985 578
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++||||||++||+.+...+.+.|+++++++.|+|+++|++ ..+...+|+++++++|.
T Consensus 154 ~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 154 ALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999999999999999999999999987799999988876 57788999999999885
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=226.71 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=125.2
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCccEEEEcCcc-----ccCCCCC
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSLT 198 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~----G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~-----~l~~~lT 198 (697)
++.+.+| +++|+|||||||||||++|. |..+++. |.+..+.... ......+++++|++ .....+|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 8877653 5444111111 12234688888887 4455668
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHc-
Q 005423 199 VREYLYYSALLQLPGFFCQRKNGLPCGERRR------VRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMVTLKKLAST- 270 (697)
Q Consensus 199 V~e~l~~~~~l~l~~~~~~~~~~LSGGqrqR------v~IA~aL~~~P~iLlLDEPTsgLD~~~~~-~i~~~L~~l~~~- 270 (697)
+.|++.+...-+.....++.++.||+||||| ++||++|+.+|+++++||||++||+.++. .+.+.|++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~ 172 (204)
T cd03240 93 ILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172 (204)
T ss_pred HhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc
Confidence 9999865422122223356778999999996 78999999999999999999999999999 999999999876
Q ss_pred CCEEEEEEecChHHHHhccCEEEEEe-CC
Q 005423 271 GCTLLFTINQSSTEVFGLFDRICLLS-NG 298 (697)
Q Consensus 271 g~tvi~tih~~~~~i~~~~D~v~vL~-~G 298 (697)
|.|||+++|++. ....||+++.|. +|
T Consensus 173 ~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 173 NFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred CCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 889999899863 446799999995 44
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=219.50 Aligned_cols=192 Identities=25% Similarity=0.352 Sum_probs=155.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
+.++|+... .-|-.+|+.+..||++-++|||||||||||-.++|++|.. |+|.++|.+.+..
T Consensus 4 ~qln~v~~~---------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~eL 70 (248)
T COG4138 4 MQLNDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATEL 70 (248)
T ss_pred eeecccccc---------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhHH
Confidence 566666653 2467789999999999999999999999999999998753 9999999875432
Q ss_pred CccEEEEcCccccCCCCCHHHHH-------------HH-HHHcCCCccccccCCCCCHHHHHHHHHHHHHhh-----CC-
Q 005423 181 YGSYGFVERETTLIGSLTVREYL-------------YY-SALLQLPGFFCQRKNGLPCGERRRVRIARELVM-----RP- 240 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l-------------~~-~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~-----~P- 240 (697)
.+.-+|..|+..-...+.|...| .. +..+++.+...+..++|||||-|||-+|...+. ||
T Consensus 71 ArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 71 ARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred HHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 13346666653322233444443 32 345678888888899999999999999987764 44
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 241 -HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 241 -~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|++|||.++||...+..+-++|.+++..|.+||++.|+. ....+.+|++.+|+.|++...|..+|+++
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 69999999999999999999999999999999999977765 56778999999999999999999999874
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-26 Score=229.95 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=115.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCcc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~ 183 (697)
.++++|.. +| ..+.+++++++ ++++|+||||||||||+++|.-.. |.+... ..+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-------------G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-------------GFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-------------ccCHHHhhhhh
Confidence 35666654 33 24568888886 899999999999999999998221 110000 0122
Q ss_pred EEEEcCccccCCCCCHHHHHHHH-----------------------------HHcCCCccccccCCCCCHHHHHHHHHHH
Q 005423 184 YGFVERETTLIGSLTVREYLYYS-----------------------------ALLQLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~-----------------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
+++++|+..+.+.+|++|.+.+. ...++++..+++...||+|||||++||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~ 140 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL 140 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence 34444444333333333322111 1123344445566899999999999999
Q ss_pred HHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 235 ELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 235 aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
+++. +|+++++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.||++++|..
T Consensus 141 al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 141 VFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9974 4799999999999999999999999999865 45666667774 67889999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=226.75 Aligned_cols=198 Identities=24% Similarity=0.302 Sum_probs=166.7
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM-- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~-- 179 (697)
...++++||++.-. .....+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++.. |+|.++|++. ..
T Consensus 255 ~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccCC
Confidence 45799999998642 22578999999999999999999999999999999999987754 9999999985 21
Q ss_pred C----CccEEEEcCcc---ccCCCCCHHHHHHHHHHcCC-----C----------------------ccccccCCCCCHH
Q 005423 180 P----YGSYGFVERET---TLIGSLTVREYLYYSALLQL-----P----------------------GFFCQRKNGLPCG 225 (697)
Q Consensus 180 ~----~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~l~l-----~----------------------~~~~~~~~~LSGG 225 (697)
+ ...++|||.|. .+.+.+|+.||+.+...-.- . .....+.+.||||
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 1 24689999875 57788999999976542110 0 0111233789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++ +..+.+|++.+||||.||.+|+++...+
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLL-iS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL-ISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEE-EehhHHHHHHhhheeeeeeCCceecccc
Confidence 999999999999999999999999999999999999999999999999999 4566789999999999999999998888
Q ss_pred chh
Q 005423 306 TLA 308 (697)
Q Consensus 306 ~~~ 308 (697)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 765
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=235.58 Aligned_cols=176 Identities=24% Similarity=0.339 Sum_probs=142.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.-+. ....|++.++.+++||-+.|.||||||||||+|+|+|+-|-+. |+|..- ....
T Consensus 391 ~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADSA 457 (604)
T ss_pred ceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCCc
Confidence 57999999998763 3489999999999999999999999999999999999999765 877543 2245
Q ss_pred EEEEcCccccCCCCCHHHHHHHHH---------------HcCCCcc------ccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 184 YGFVERETTLIGSLTVREYLYYSA---------------LLQLPGF------FCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~~~------~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+-|+||.+.+... |.+|-+.|.. .++|++. .++-.+.||+||||||++||.|+++|++
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~ 536 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW 536 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence 7899999987654 9999887642 1223222 1223478999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
++|||.|++||+.++..++++|++-. .+.|||-+.|.+ .+..+.++.+-+.
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 99999999999999999999998743 478888888876 4566777766553
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-24 Score=219.93 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=115.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-------CCCCccEEEEcCcc---------ccCCCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-------EMPYGSYGFVERET---------TLIGSLT 198 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 198 (697)
..+++|+||||||||||+++|++++.+.. .|++...|. +. ......+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 55999999999999999999999987541 256766654 21 11223678888874 1223344
Q ss_pred HHHHHHH---------------------HHHcCCC--------------------ccccccCCCCCHHHHHHHHHHHHHh
Q 005423 199 VREYLYY---------------------SALLQLP--------------------GFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 199 V~e~l~~---------------------~~~l~l~--------------------~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
|.+++.. ...+++. +..++.+.+||||||||++||++|+
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 4433311 1222332 1223567899999999999999998
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 238 ----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 238 ----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.+|+++++||||++||+.++..+.+.|++++ +|.|+|+++|. .++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC--HHHHHhCCEEEEEE
Confidence 5789999999999999999999999999996 48899998888 46778899999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=251.73 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=98.0
Q ss_pred cCCCCCHHHHHHHHH---------------------HcCCCcc-ccccCCCCCHHHHHHHHHHHHHh---hCCCEEEEeC
Q 005423 193 LIGSLTVREYLYYSA---------------------LLQLPGF-FCQRKNGLPCGERRRVRIARELV---MRPHVLFIDE 247 (697)
Q Consensus 193 l~~~lTV~e~l~~~~---------------------~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~---~~P~iLlLDE 247 (697)
.+...||.|+|.++. .+++... .++...+|||||||||+||++|+ .+|++|||||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDE 838 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDE 838 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 345678888875431 1234333 46677899999999999999998 6999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe------CCeEEEEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 311 (697)
||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||++++|. +|++++.|+++++..
T Consensus 839 PTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 839 PTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999988999999888764 55 8999999996 799999999988753
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=240.63 Aligned_cols=114 Identities=25% Similarity=0.293 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHH-------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHH
Q 005423 196 SLTVREYLYYSAL-------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 196 ~lTV~e~l~~~~~-------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~ 258 (697)
.+||.|++.|... +++.. ..++....||||||||+.||++|+.+| +++||||||+|||+....
T Consensus 791 ~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~ 870 (943)
T PRK00349 791 DMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR 870 (943)
T ss_pred cCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence 3789999887532 23332 245677899999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
.+++.|+++.++|.|||+++|++. .+ ..||+|+.| ++|++++.|+++++.+
T Consensus 871 ~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 871 KLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999988999999888874 44 579999999 7999999999988754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-22 Score=235.49 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHH-------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHH
Q 005423 196 SLTVREYLYYSAL-------------LQLPG-FFCQRKNGLPCGERRRVRIARELVM---RPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 196 ~lTV~e~l~~~~~-------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~---~P~iLlLDEPTsgLD~~~~~ 258 (697)
.+||.|.+.|... +++.. ..++....|||||+||+.||++|+. +|+++||||||+|||+..+.
T Consensus 789 ~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~ 868 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 868 (924)
T ss_pred CCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHH
Confidence 4577888776543 22322 2456778999999999999999997 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhh
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 309 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 309 (697)
.+++.|+++.++|.|||+++|++. .+ +.||++++| ++|++++.|+++++
T Consensus 869 ~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 869 KLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999988999999888864 45 579999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-23 Score=216.16 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=148.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+.|.|... .-=+..||+++++||++-|+|.||||||||+++|.|+..|++ |+|.+||++++..
T Consensus 322 ~lelrnvrfay~~~----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQDN----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCcc----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 58999999998632 245788999999999999999999999999999999999986 9999999986532
Q ss_pred -CccEEEEcCccccCCCCCHH------HHHHHH-HHcCCCcc---cc--ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 181 -YGSYGFVERETTLIGSLTVR------EYLYYS-ALLQLPGF---FC--QRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~------e~l~~~-~~l~l~~~---~~--~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
++-++-|+.|..+|+.+--. +++..- ..+.+... .+ -..-.||.|||||+++-.||+-+-+|+++||
T Consensus 395 YR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE 474 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE 474 (546)
T ss_pred HHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh
Confidence 23355566666666543211 222211 11222111 11 1235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 248 PLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~-~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
=-+.-||.-+..+.+.+- .+++.|+||+.++|++ .-|..+||++.+++|++++.-
T Consensus 475 WAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999887665 5678899999988876 468899999999999998754
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=219.95 Aligned_cols=195 Identities=25% Similarity=0.266 Sum_probs=132.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Ccc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~ 183 (697)
.+.+.|+++++. +..+++|+++.+.+|+-.+|+|+|||||||+|++|.|...|.... =.++.-.+..... ...
T Consensus 75 dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~-~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH-IDFYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc-cchhhhcccCCCchHHH
Confidence 588999999885 457999999999999999999999999999999999998774311 1122222111100 000
Q ss_pred EEEEc-------------------C-cc-ccCCCCCHHHHHHH----------H----HHcCCCccccccCCCCCHHHHH
Q 005423 184 YGFVE-------------------R-ET-TLIGSLTVREYLYY----------S----ALLQLPGFFCQRKNGLPCGERR 228 (697)
Q Consensus 184 ~~yv~-------------------Q-~~-~l~~~lTV~e~l~~----------~----~~l~l~~~~~~~~~~LSGGqrq 228 (697)
+-++. + ++ ..-...+..+-+.. + ....+++...+...++|||+|.
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 10110 0 00 00000011111100 0 0011233344566899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe-EEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN-TLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~-iv~~G~~~ 307 (697)
|++|||+|..+|++|+|||||+|||..+..-+-+.|.+.-+. ++++ +.|+.+.+-.+|.+|+-|.+++ +.|.|+-+
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi-~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVI-VSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEE-EecchhhhhhHhhhhheecccceeeecCCHH
Confidence 999999999999999999999999999999999888876432 4555 4455678889999999999999 55556655
Q ss_pred h
Q 005423 308 A 308 (697)
Q Consensus 308 ~ 308 (697)
.
T Consensus 306 q 306 (614)
T KOG0927|consen 306 Q 306 (614)
T ss_pred H
Confidence 4
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-22 Score=210.12 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=136.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++|.++++++. ..-|.-=.+.+..||+++++||||-||||+.++|+|.++|++ |. . ..-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~-----~~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----E-----EDLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----C-----ccce
Confidence 3466777766653 234555567888999999999999999999999999999986 65 1 1124
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
++|-||--.--...||.+.|.-... +++...++++..+|||||.|||+||.+|..++++.+||||
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 7888886444456799998854321 3344556778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEe
Q 005423 249 LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
++.||++.+..+-+.++++.++ ++|.+++ .|+...+--++||++|..
T Consensus 483 SA~LDvEqR~~vakvIRR~~e~~~kta~vV-dHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 483 SAYLDVEQRIIVAKVIRRFIENNEKTALVV-DHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hhhccHHHHHHHHHHHHHHHhhcCceEEEE-ecceehhhhhhceEEEEe
Confidence 9999999999999999999954 5677764 445556667899998764
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=195.27 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=114.6
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEe------CCCCCccEEEEcCccccCCC-
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV--NGAK------SEMPYGSYGFVERETTLIGS- 196 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i--~G~~------~~~~~~~~~yv~Q~~~l~~~- 196 (697)
++++++.+.+| +.+|+||||||||||+.+|...... +... .|.. .......+..++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~------~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~ 84 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG------KASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANP 84 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC------CcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCc
Confidence 35566677777 8899999999999999999753321 1111 1110 01112346666666444431
Q ss_pred CCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--
Q 005423 197 LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-- 270 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-- 270 (697)
.+..+--.....++......++++.||+|||||++||++| +.+|++++|||||+|||..++..+.+.|+++.++
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~ 164 (198)
T cd03276 85 LCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQP 164 (198)
T ss_pred CCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCC
Confidence 2222111222233334455678899999999999999999 5899999999999999999999999999998653
Q ss_pred C-CEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 271 G-CTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 271 g-~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+ +|||+++|+. .++.++ |+|.+|..|+
T Consensus 165 ~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 165 GRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred CcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 3 5788877765 466554 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=194.69 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=155.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeC-C----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKS-E----M 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~-G~I~i~G~~~-~----~ 179 (697)
+.++|++..+... .+..+++++||+++..||+-+++|+||||||-..|+|+|..+..=.++ .+..+++.+. + .
T Consensus 4 LDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 5678888888654 356789999999999999999999999999999999999876531111 2334444331 1 1
Q ss_pred CC----ccEEEEcCccc--cCCCCCHHHHHH---------------HH----------HHcCCC---ccccccCCCCCHH
Q 005423 180 PY----GSYGFVERETT--LIGSLTVREYLY---------------YS----------ALLQLP---GFFCQRKNGLPCG 225 (697)
Q Consensus 180 ~~----~~~~yv~Q~~~--l~~~lTV~e~l~---------------~~----------~~l~l~---~~~~~~~~~LSGG 225 (697)
.+ +.+++++|++. |-|+.+|..-|- |+ ...+.. +.+..++.+|.-|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 11 34788999874 334434332221 11 112222 2245677899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|-|+|.||.|++.+|++||.||||+.+|+.++.+|.++|.++.+ +|+||+++.| +...+.+.||++-||.-|+-++.+
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~-Dl~~is~W~d~i~VlYCGQ~~ESa 241 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH-DLQMISQWADKINVLYCGQTVESA 241 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcc-cHHHHHHHhhheEEEEeccccccc
Confidence 99999999999999999999999999999999999999999985 5778887555 567899999999999999999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+.+++++
T Consensus 242 ~~e~l~~ 248 (330)
T COG4170 242 PSEELVT 248 (330)
T ss_pred chhHHhc
Confidence 9998875
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-23 Score=206.52 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Q 005423 407 TRVAVLTWRSLLIMSREWKYY-WLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV-PALMKEI 484 (697)
Q Consensus 407 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~~~v-~~~~~er 484 (697)
+|++.+++|+++..+|||.+. ..+++..+++++++|.+|.+++++.+++ ++.|.+++.+.+.++...... .....|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999999555555 788888888887776555444 7788899
Q ss_pred HHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005423 485 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 564 (697)
Q Consensus 485 ~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~ 564 (697)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.++++.+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHh
Q 005423 565 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEY 619 (697)
Q Consensus 565 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef 619 (697)
...+..+.+.+..++++++|.+.|.+.+|+ |..|+.|++|++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999984 66679999999999999999876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-21 Score=199.05 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEE
Q 005423 219 KNGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 294 (697)
Q Consensus 219 ~~~LSGGqrqRv~IA~aL~~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~v 294 (697)
...||||||||++||++++.+ |+++||||||+|||+..+..+.+.|++++++|.++|+++|++ ++.+.||++++
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~ 230 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVG 230 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEE
Confidence 378999999999999999875 899999999999999999999999999987799999988874 56689999999
Q ss_pred Ee
Q 005423 295 LS 296 (697)
Q Consensus 295 L~ 296 (697)
|.
T Consensus 231 ~~ 232 (247)
T cd03275 231 VY 232 (247)
T ss_pred EE
Confidence 96
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=213.82 Aligned_cols=188 Identities=22% Similarity=0.289 Sum_probs=142.0
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
+++.+.++|++|.|.++ ..++++++|-+.+++.+|++||||+|||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 45679999999998642 269999999999999999999999999999999999998865 87754322
Q ss_pred ccEEEEcCc--cccCCCCCHHHHHHH--------------HHHcCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 182 GSYGFVERE--TTLIGSLTVREYLYY--------------SALLQLPGF-FCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~e~l~~--------------~~~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
..+++..|+ +.+.-+.++.|++.- -..+++.+. .....++||+|||+||..|+.++..|.+|+
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLl 532 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLL 532 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEE
Confidence 123333332 233334455555531 123344432 344568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE-EEEeCc
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGET 306 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i-v~~G~~ 306 (697)
|||||+|||..+...+-+.|.+.. | +||+++|+- ..|.+++++|.+..+|.+ .+.|+.
T Consensus 533 LDEPtnhLDi~tid~laeaiNe~~--G-gvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 533 LDEPTNHLDIETIDALAEAINEFP--G-GVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred ecCCCcCCCchhHHHHHHHHhccC--C-ceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999888887753 3 566656654 588999999999988765 455543
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-21 Score=192.11 Aligned_cols=147 Identities=19% Similarity=0.128 Sum_probs=112.4
Q ss_pred eeeeeeeEEcCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCC
Q 005423 125 VVKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195 (697)
Q Consensus 125 iL~~vs~~v~~Ge-~~aIiG~sGsGKSTLl~~L~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~ 195 (697)
.+.++|+++.+|+ +++|.||||||||||||+|+ |..-|.. . ...++|+.|....+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~------------~~~~~~~~~~~~~lg 80 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---E------------GSSLPVFENIFADIG 80 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---c------------cccCcCccEEEEecC
Confidence 3456788888995 89999999999999999998 4332211 0 012344445432221
Q ss_pred CCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEE
Q 005423 196 SLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTL 274 (697)
Q Consensus 196 ~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tv 274 (697)
..+...+....+|+|||||+.|+++ +.+|+++++||||+|||+.....+. ..++++.+.|.++
T Consensus 81 ---------------~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~v 144 (200)
T cd03280 81 ---------------DEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALV 144 (200)
T ss_pred ---------------chhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1112234446899999999999988 4899999999999999999999996 5788888778999
Q ss_pred EEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 275 i~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|+++|+ .++.++||++++|++|++++.+
T Consensus 145 i~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 145 IATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred EEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 998886 3677999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=191.91 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=113.6
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC----------------CceeEEE--ECCEeCCCCCcc-EEEE
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA----------------RMYGEVF--VNGAKSEMPYGS-YGFV 187 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~----------------~~~G~I~--i~G~~~~~~~~~-~~yv 187 (697)
+++.+.+.+| +.+|+|+|||||||||++|.-.+-... ...+.|. +++.......+. +-++
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~ 93 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL 93 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence 4455555555 789999999999999999876542110 0112221 111111111222 3466
Q ss_pred cCcc-ccCCCCCHHHHHHHHHHcC-CCccccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 188 ERET-TLIGSLTVREYLYYSALLQ-LPGFFCQRKNGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 188 ~Q~~-~l~~~lTV~e~l~~~~~l~-l~~~~~~~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+|+. ..+..+++.|.+. .++ ..+.....+.+||||||||+.++++| +.+|+++++||||+|||+.++..++
T Consensus 94 ~q~~~~~~~~~~~~e~l~---~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~ 170 (213)
T cd03277 94 PQDRVGEFAKLSPIELLV---KFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF 170 (213)
T ss_pred chHHHHHHHhCChHhHhe---eeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH
Confidence 7764 3456677776651 111 11223456789999999999877554 5799999999999999999999999
Q ss_pred HHHHHHHHc-C-CEEEEEEecChHHHHhccC--EEEEEeCCe
Q 005423 262 VTLKKLAST-G-CTLLFTINQSSTEVFGLFD--RICLLSNGN 299 (697)
Q Consensus 262 ~~L~~l~~~-g-~tvi~tih~~~~~i~~~~D--~v~vL~~G~ 299 (697)
+.|++++++ | .|+|+++||.. ++.+.+| +|++|++|+
T Consensus 171 ~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 171 DMLVETACKEGTSQYFLITPKLL-PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHhhcCCCceEEEEchhhc-cCCcccCceEEEEEecCc
Confidence 999999866 5 57888888754 4556666 788889887
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=176.07 Aligned_cols=199 Identities=21% Similarity=0.244 Sum_probs=150.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
-.+++.++.|+|+. ..+++-|+|+.++.|....++|.||||||||||+|+|..-... |.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCccccccc
Confidence 35899999999963 4589999999999999999999999999999999999865544 899999975311
Q ss_pred -CCccEEEEcC----------ccccCCCCCHHHHHHHHHHc----------C-CCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 -PYGSYGFVER----------ETTLIGSLTVREYLYYSALL----------Q-LPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 -~~~~~~yv~Q----------~~~l~~~lTV~e~l~~~~~l----------~-l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
......|.-- +-.+-...++.+.| |+..- + +.-....+.+.+|-|||+||.|+..|+
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL 163 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL 163 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHH-hhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc
Confidence 1122333322 11122244555443 32110 0 111123345889999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.-+||+|||-|-.||..++..+++.|++-.+ +|.||+..+|-- +-+.....+++.+++|+++-.-+.+++.+
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCeeeeccccchhhh
Confidence 99999999999999999999999999999884 689999988864 45677899999999999998666555544
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=196.25 Aligned_cols=180 Identities=17% Similarity=0.273 Sum_probs=138.7
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...+++++|++.-++. +..+++|+|+.|..|+-+.|.||||||||+|+|+|+|+-|..+ |++..-.+. ..+
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~---~~~ 501 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDG---GPK 501 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccC---CCC
Confidence 3569999999886642 4578899999999999999999999999999999999998665 888654322 114
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcc------cc-----ccCCCCCHHHHHHHH
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGF------FC-----QRKNGLPCGERRRVR 231 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~------~~-----~~~~~LSGGqrqRv~ 231 (697)
.+-|+||.|.+.- .|.||-+-|.. ..++.+. .+ +....||+||+||++
T Consensus 502 ~lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 502 DLFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred ceEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHH
Confidence 5889999887543 36666665431 1112111 11 112679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
.||-+.++|++-||||.||++|......+.+.+++ .|.|.|-+.|.. .+.+.=|.++-|+.
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 99999999999999999999999999998887766 688888877765 45667788888874
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=176.07 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCC---ceeEE-EECCE-eCCCCCccEEEEcCccccCCCCCHHHHHHHHHHc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR---MYGEV-FVNGA-KSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~---~~G~I-~i~G~-~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l 209 (697)
++.+.+|+||||||||++|.+|.=..-.... ....+ .+++. ........+...++.. ..
T Consensus 21 ~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~----------------~~ 84 (178)
T cd03239 21 SNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKS----------------YF 84 (178)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECc----------------eE
Confidence 3339999999999999999998643321100 01111 11111 1111111233223222 00
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHH
Q 005423 210 QLPGFFCQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 210 ~l~~~~~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i 285 (697)
-++.....+. ||||||||++|||+|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++. .
T Consensus 85 ~~~~~~~~~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~ 160 (178)
T cd03239 85 LVLQGKVEQI--LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--M 160 (178)
T ss_pred EecCCcCccc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--H
Confidence 1122111222 9999999999999996 699999999999999999999999999999877899999888863 4
Q ss_pred HhccCEEEEEeC
Q 005423 286 FGLFDRICLLSN 297 (697)
Q Consensus 286 ~~~~D~v~vL~~ 297 (697)
...+|+++.+..
T Consensus 161 ~~~adrvi~i~~ 172 (178)
T cd03239 161 FENADKLIGVLF 172 (178)
T ss_pred HhhCCeEEEEEE
Confidence 568999999964
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-20 Score=203.07 Aligned_cols=194 Identities=25% Similarity=0.291 Sum_probs=129.6
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---- 178 (697)
+..|..++++..|. .+.+|++-++++..|...+|+|+||+|||||||+|+.-.-..-.++-++ -|....
T Consensus 78 ~~Di~~~~fdLa~G-----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~--~g~~t~~~~~ 150 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV--RGDDTEALQS 150 (582)
T ss_pred ccceeeeeeeeeec-----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe--eccchHHHhh
Confidence 44688888998883 5689999999999999999999999999999999986100000000111 111100
Q ss_pred ---CCCccEEEEcCccccCCCCCHHHHHH-HHHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 179 ---MPYGSYGFVERETTLIGSLTVREYLY-YSALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 179 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
..-...-++.++..+...++..|... .-+-++... ...+..+.||||=|-|++|||||..+|+||+|||||+.||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 00011233444443333323222211 111222222 2345568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE-EEEeCch
Q 005423 254 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGETL 307 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i-v~~G~~~ 307 (697)
..+..-+.+.|+.+. .|+|+++|+ +..+-+.|..|+-+++-++ .|.|.-+
T Consensus 231 v~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 231 VVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred hHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 999998888887754 688876654 6677788888888876554 3445433
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=188.78 Aligned_cols=165 Identities=25% Similarity=0.321 Sum_probs=128.0
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
.++.+-++||+|.|++ .++++++++|-|.--..+||+||||.||||||++|.|.+.|.. |+..-| .+
T Consensus 583 ~PPvLGlH~VtFgy~g----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKn------hr 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPG----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKN------HR 649 (807)
T ss_pred CCCeeecccccccCCC----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhcc------ce
Confidence 4567899999999973 5689999999999999999999999999999999999998875 766433 23
Q ss_pred ccEEEEcCcc--ccCCCCCHHHHHHHHHH------------cCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 182 GSYGFVERET--TLIGSLTVREYLYYSAL------------LQLPGF-FCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~e~l~~~~~------------l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
-+||+..|+. .|-...|..|.|.-... .++... ..-....||||||-||++|.--+..|+|||||
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD 729 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD 729 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence 4688887763 45556677777642210 111111 12245789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
|||++||..+...+.+.|++.. | .||+++|+..
T Consensus 730 EPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR 762 (807)
T KOG0066|consen 730 EPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER 762 (807)
T ss_pred CCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc
Confidence 9999999999999999888764 3 4566577653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=186.27 Aligned_cols=159 Identities=27% Similarity=0.310 Sum_probs=120.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CC----ccEEEEcCcc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PY----GSYGFVERET 191 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~----~~~~yv~Q~~ 191 (697)
++|++++|+|+||-||||-+|+|+|.+.|+- |+-. +.|...+. .. ...-||.--+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 5899999999999999999999999998864 3310 11111000 00 1112332223
Q ss_pred ccCCCCCHHHHHHHH----------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 192 TLIGSLTVREYLYYS----------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 192 ~l~~~lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
..+ .-+|.|-|.-. ..+.+...+++..++|||||-||++||.+++.+.+++++|||||-||...+..+.
T Consensus 175 k~~-KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 175 KVV-KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred HHh-cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH
Confidence 333 23788877432 3566777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
+.+++|++.+++||++-|+ ...+--++|-|.++.+
T Consensus 254 r~Irel~~~~k~ViVVEHD-LavLD~lsD~vhI~YG 288 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHD-LAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHhccCCeEEEEech-HHHHHHhhheeEEEec
Confidence 9999999889999996554 5566667999888863
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=185.90 Aligned_cols=185 Identities=20% Similarity=0.199 Sum_probs=141.5
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
.++.+++.+|++.+..+. -+++.+++..++.-+.++++|+||+||||++|++.|-..|.. |-+.+++ +
T Consensus 359 ~~p~l~i~~V~f~y~p~~---y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------r 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSE---YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------R 426 (582)
T ss_pred CCCeeEEEeeeccCCCcc---hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------c
Confidence 456799999998875321 178999999999999999999999999999999999777654 7666554 3
Q ss_pred ccEEEEcCcccc---------------CCCCCHHHHHHHHHHcCCCcccc-ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTL---------------IGSLTVREYLYYSALLQLPGFFC-QRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l---------------~~~lTV~e~l~~~~~l~l~~~~~-~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.+++|-.|...= +|..|-.|.-+-...+++++... ....+||||||=||++|.....+|.+|+|
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVL 506 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVL 506 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEe
Confidence 457777775432 22222222222223445555432 33588999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
||||+.||-.+-..+.+.|+.+. | .||+++|+ ...+..+|+.+.+.++|++.-
T Consensus 507 DEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 507 DEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCccccHHHHHHHHHHHHhcC--C-cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999988874 4 45554665 568889999999999999864
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=166.97 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=95.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE-EEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
+.+|.++.|+|||||||||+++++....-... |.+.... .. ..+ ++++....+ .
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~---~~~~~~~-~~-----~~g~~~~~~~~~~---------i------- 72 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQ---SATRRRS-GV-----KAGCIVAAVSAEL---------I------- 72 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhcc---hhhhccC-cc-----cCCCcceeeEEEE---------e-------
Confidence 33556999999999999999999866432211 2222110 00 011 112211111 0
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~ 287 (697)
....+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|+++|++ ++.+
T Consensus 73 -----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~ 145 (162)
T cd03227 73 -----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAE 145 (162)
T ss_pred -----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHH
Confidence 0012499999999999999987 7899999999999999999999999999876688999988876 3556
Q ss_pred ccCEEEEEeC
Q 005423 288 LFDRICLLSN 297 (697)
Q Consensus 288 ~~D~v~vL~~ 297 (697)
.+|+++.|..
T Consensus 146 ~~d~~~~l~~ 155 (162)
T cd03227 146 LADKLIHIKK 155 (162)
T ss_pred hhhhEEEEEE
Confidence 7999999963
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-18 Score=177.61 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..|||||+||++||++++. +|+++++||||++||+.++..+++.|+++.+ +.|+|+++|++. +...+|++++|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997664 9999999999999999999999999999874 689999899874 55799999999
Q ss_pred eCCe
Q 005423 296 SNGN 299 (697)
Q Consensus 296 ~~G~ 299 (697)
.+|+
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-18 Score=178.27 Aligned_cols=173 Identities=27% Similarity=0.377 Sum_probs=126.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEeCCCCCccEEEEcCc-cccCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----ARMYGEVFVNGAKSEMPYGSYGFVERE-TTLIG 195 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-----~~~~G~I~i~G~~~~~~~~~~~yv~Q~-~~l~~ 195 (697)
...+|+|||++++||++++|+|+|||||||||++|+|..... ...+|.|.+--.. ..+.+|-+ +.-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 346899999999999999999999999999999999975321 1123666553211 11222222 11122
Q ss_pred CCCHHHHHH-----------HHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005423 196 SLTVREYLY-----------YSALLQLPG--FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 196 ~lTV~e~l~-----------~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 262 (697)
..|+.|.+. .-...++.+ ...++.++||.|||.|+.||.+|..+|.+++.||--|.||..++..+.+
T Consensus 469 ~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 469 EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 345555442 112223322 1235568999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCEEEEEEecChHHHHhc-cCEEEEEeCCeEE
Q 005423 263 TLKKLAS-TGCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 301 (697)
Q Consensus 263 ~L~~l~~-~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv 301 (697)
-|.++++ .|.|+++++|+|. .+-++ =|+++.+.-|++.
T Consensus 549 kiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 549 KISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 9999995 5899999999983 55556 6999888766653
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-18 Score=170.51 Aligned_cols=144 Identities=20% Similarity=0.135 Sum_probs=104.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.+++|+++. +|++++|+||||||||||+|+|+|...- ...|.++.. . .++.|.+.+++.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466666655 5799999999999999999999985421 123333211 1 3566777889999999998
Q ss_pred HHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEEec
Q 005423 204 YYSALLQLPGFFCQRKNGLPCGERRRVRIARELVM--RPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 204 ~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tvi~tih~ 280 (697)
.++.. ....+.+|+.-+...+. +|+++|+||||+|||+.....+. ..++++.+.|.|+|+++|+
T Consensus 81 ~~~~s-------------~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~ 147 (199)
T cd03283 81 RDGIS-------------YFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHD 147 (199)
T ss_pred ccccC-------------hHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 65321 12455677766666667 99999999999999999998775 4788888788999998888
Q ss_pred ChHHHHhc--cCEEEEE
Q 005423 281 SSTEVFGL--FDRICLL 295 (697)
Q Consensus 281 ~~~~i~~~--~D~v~vL 295 (697)
+. .+..+ .++|..+
T Consensus 148 ~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 148 LE-LADLLDLDSAVRNY 163 (199)
T ss_pred HH-HHHhhhcCCCeEEE
Confidence 64 44443 4455444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-18 Score=171.35 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=106.8
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~ 207 (697)
.++++.+|++++|+|||||||||||++|++.. .... |.. .......+++..|....+ ...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~---g~~------~~~~~~~i~~~dqi~~~~---~~~d~i---- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQI---GCF------VPAESASIPLVDRIFTRI---GAEDSI---- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHc---CCC------ccccccccCCcCEEEEEe---cCcccc----
Confidence 34555689999999999999999999999532 1111 221 111122344443332222 222221
Q ss_pred HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHH
Q 005423 208 LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 208 ~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
....+.++++++ |++.+.+++.+|+++|+||||+|||+.....+.. +++.+.+.+.++|+++|++ ++.
T Consensus 86 --------~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~ 154 (202)
T cd03243 86 --------SDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELA 154 (202)
T ss_pred --------cCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHH
Confidence 123345666655 4777788899999999999999999998888765 5677777788999988864 567
Q ss_pred hccCEEEEEeCCeEEEEeCchhhH
Q 005423 287 GLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 287 ~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++..++.|++...++..+..
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 155 DLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHhhcCCCeEEEEEEEEecCCeee
Confidence 789999999999999888765443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-18 Score=172.68 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=109.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE-EEcCccccCCCCCHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e 201 (697)
+.+.+|+++...+|++++|.||||+|||||++.++-. .- ..++| |||.+...++ +.+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~~------------------la~~g~~vpa~~~~~~---~~~ 74 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-VL------------------MAQIGCFVPCDSADIP---IVD 74 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-HH------------------HHHhCCCcCcccEEEe---ccc
Confidence 3578899999999999999999999999999998721 00 00111 3333322111 111
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHH-cCCEEE
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEP---LYHLDSVSALLMMVTLKKLAS-TGCTLL 275 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---TsgLD~~~~~~i~~~L~~l~~-~g~tvi 275 (697)
.+. ..+++.+ ...+++|.|+++++.+++++ +.+|+++||||| |++||...... ..++.+.+ .|.++|
T Consensus 75 ~il--~~~~l~d---~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vl 147 (222)
T cd03285 75 CIL--ARVGASD---SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCL 147 (222)
T ss_pred eeE--eeecccc---chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEE
Confidence 110 0112221 23578999999999999999 899999999999 99999888754 33355553 578999
Q ss_pred EEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 276 ~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+++|. .++.++||++..+++|++...+.
T Consensus 148 isTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 148 FATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred EEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 98884 57889999999999999987765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=198.49 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=84.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.+....|||||.||+-||.+|..+ +.+++|||||+||++.....+++.|++|.+.|.|||++-|++ ++.+.||.|
T Consensus 1694 Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~i 1771 (1809)
T PRK00635 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYL 1771 (1809)
T ss_pred CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEE
Confidence 455678999999999999999876 789999999999999999999999999999999999977765 566779999
Q ss_pred EEEe------CCeEEEEeCchhhHH
Q 005423 293 CLLS------NGNTLFFGETLACLQ 311 (697)
Q Consensus 293 ~vL~------~G~iv~~G~~~~~~~ 311 (697)
+-|- +|+||+.|+|+++..
T Consensus 1772 idlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1772 IEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9993 579999999999865
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=177.78 Aligned_cols=93 Identities=26% Similarity=0.343 Sum_probs=83.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 217 QRKNGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
+....|||||.|||-||.+|..+. -+.+|||||+||-..-..++++.|.+|.+.|.|||++-|. . ++.+.||.|+
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN-L-dVIk~AD~II 895 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN-L-DVIKTADWII 895 (935)
T ss_pred CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc-c-ceEeecCEEE
Confidence 445789999999999999999887 8999999999999999999999999999999999996554 3 5778999999
Q ss_pred EE------eCCeEEEEeCchhhHH
Q 005423 294 LL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 294 vL------~~G~iv~~G~~~~~~~ 311 (697)
=| .+|+||+.|+|+++.+
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHh
Confidence 99 3589999999999875
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-17 Score=178.03 Aligned_cols=161 Identities=23% Similarity=0.332 Sum_probs=121.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+.++|+-+-.+ ....++..++|.+++|--+.|.||||||||+|.|+|.|+-|... |...+ .+...+
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcce
Confidence 477888776554 34568999999999999999999999999999999999998643 44432 233458
Q ss_pred EEEcCccccCCCCCHHHHHHHH-----------------H---HcCCCcc---------ccccCCCCCHHHHHHHHHHHH
Q 005423 185 GFVERETTLIGSLTVREYLYYS-----------------A---LLQLPGF---------FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~-----------------~---~l~l~~~---------~~~~~~~LSGGqrqRv~IA~a 235 (697)
-|+||.|.+- --|.+|-+-|. + .+++... .......||||||||+++||.
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 9999988654 33444444221 0 1111111 111225699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+-++|+.-+|||.||+.-+.....+.+..++ .|.+.|-++|+|+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 9999999999999999999888888877665 5889999899986
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=184.55 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=86.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.++...+|||||+|||.||++|+.+| +++||||||+|||+.....+++.|++++++|.|||+++|++ ..+ ..||+|
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~v 558 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYV 558 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEE
Confidence 46778999999999999999999986 89999999999999999999999999998899999988886 355 589999
Q ss_pred EEE------eCCeEEEEeCchhhH
Q 005423 293 CLL------SNGNTLFFGETLACL 310 (697)
Q Consensus 293 ~vL------~~G~iv~~G~~~~~~ 310 (697)
++| ++|++++.|+++++.
T Consensus 559 i~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 559 IDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEecccccCCCCEEeeccCHHHHh
Confidence 999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-16 Score=184.31 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=86.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.++....|||||||||.||++|..+| +++||||||+|||+..+..+++.|+++++.|.|||+++|++. ++ ..||+|
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~v 560 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYI 560 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEE
Confidence 46778999999999999999999997 999999999999999999999999999988999999888864 55 469999
Q ss_pred EEE------eCCeEEEEeCchhhHH
Q 005423 293 CLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 293 ~vL------~~G~iv~~G~~~~~~~ 311 (697)
++| ++|++++.|+++++..
T Consensus 561 i~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 561 VDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EEeccccCCCCCEEeeccCHHHHhc
Confidence 999 9999999999988743
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-16 Score=157.71 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=99.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
...+.+|+++..++|++++|+||||+||||++++++++.-- +++ |. +| +.....+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G~----------~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---GC----------FV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---CC----------Cc---chhhcCccChh
Confidence 34688999999999999999999999999999999876311 111 11 12 22334556666
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEEec
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~g~tvi~tih~ 280 (697)
++.. .++..+...+..+.+|+|++|+ ..+.+++.+|+++++|||++|+|+.....+ ...++.+.+.|.++|+++|.
T Consensus 74 ~I~~--~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 74 RLLS--RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred heeE--ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 6642 2233334455667899999975 555678899999999999999999776655 45678888889999998886
Q ss_pred C
Q 005423 281 S 281 (697)
Q Consensus 281 ~ 281 (697)
.
T Consensus 151 ~ 151 (204)
T cd03282 151 R 151 (204)
T ss_pred H
Confidence 4
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=154.72 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=108.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.+.+++++..++ ++++|.||||||||||||.+++..-. |+ .|.........++++.| +++.+++.|++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 467788887776 99999999999999999999875321 11 12222222345676654 56677887776
Q ss_pred HHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEE
Q 005423 204 YYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFT 277 (697)
Q Consensus 204 ~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~t 277 (697)
..+ .|.=...++.|++++ +.+|++++|||| |+++|.... ....++.+.+. +.++|++
T Consensus 87 s~g---------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 87 AGG---------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred ccC---------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEE
Confidence 432 233233333444444 579999999999 888887552 23455555655 8899998
Q ss_pred EecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 278 ih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|+. ++.+++|++.-+.+|++...+..+++.
T Consensus 150 TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 150 THYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred eCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8874 678899998888899998887776654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=155.98 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc-
Q 005423 220 NGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF- 289 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~- 289 (697)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+ ++++|+.. .+.++|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence 458999999999999985 7999999999999999999999999998753 34 44456543 566666
Q ss_pred --CEEEEEeCCeE
Q 005423 290 --DRICLLSNGNT 300 (697)
Q Consensus 290 --D~v~vL~~G~i 300 (697)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-16 Score=168.22 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=130.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC-
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~~- 179 (697)
+.|.++|.+.+-. .+.++.|-|++|-.|...+|+||||-||||||+.|+.+ +||. =+|++..+.+..
T Consensus 263 ~DIKiEnF~ISA~-----Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad 333 (807)
T KOG0066|consen 263 MDIKIENFDISAQ-----GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVAD 333 (807)
T ss_pred ccceeeeeeeecc-----cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeec
Confidence 4567777776643 45789999999999999999999999999999999987 4554 244444432110
Q ss_pred -----------CCccEEEEcCcccc-----CCCCCHHHHHHHHH--------------------HcCCCcc-ccccCCCC
Q 005423 180 -----------PYGSYGFVERETTL-----IGSLTVREYLYYSA--------------------LLQLPGF-FCQRKNGL 222 (697)
Q Consensus 180 -----------~~~~~~yv~Q~~~l-----~~~lTV~e~l~~~~--------------------~l~l~~~-~~~~~~~L 222 (697)
..++...+..+..| -...|+.|.|.-.+ -++.... .++....+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 00111111111111 12345555552110 1122222 23444789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 223 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
|||=|-||++||||..+|-+|.|||||++||..+..-+-+.|+.+. +|.++++|+- ..+-..|..|+-|++-++-|
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhhhhhh
Confidence 9999999999999999999999999999999998888888888776 4788877765 57788999999999887655
Q ss_pred E
Q 005423 303 F 303 (697)
Q Consensus 303 ~ 303 (697)
+
T Consensus 490 Y 490 (807)
T KOG0066|consen 490 Y 490 (807)
T ss_pred h
Confidence 4
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-15 Score=154.80 Aligned_cols=138 Identities=24% Similarity=0.242 Sum_probs=97.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------CccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
.-++|+||||||||||+++|+|.++++. |+|.++|+++... .+.+++++|.+ +....+|.++..-..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~~--- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKAE--- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHHH---
Confidence 5789999999999999999999999875 9999999876321 12356777765 334556665532111
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH-H----
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-V---- 285 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~-i---- 285 (697)
| .....+..+|+++++|||++ ...+..+++.+. +|.++|+|+|.+..+ +
T Consensus 185 --------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~ 238 (270)
T TIGR02858 185 --------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAHGRDVEDLYKRP 238 (270)
T ss_pred --------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEechhHHHHHHhCh
Confidence 1 13333446999999999974 233445555544 699999999975432 2
Q ss_pred -------HhccCEEEEEeCCeEEEEeCchhh
Q 005423 286 -------FGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 286 -------~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
..+|||+++|++|+ ..|.++++
T Consensus 239 ~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 239 VFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 26799999999887 56666554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-14 Score=143.99 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=86.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC 216 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~ 216 (697)
+++|.||||+|||||||.++- ..-... |... ......++++.+....+ +..+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~---G~~v------~a~~~~~~~~d~il~~~---------------~~~d~~~ 56 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQI---GSFV------PAESAELPVFDRIFTRI---------------GASDSLA 56 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHh---CCCe------eehheEecccceEEEEe---------------CCCCchh
Confidence 368999999999999999982 221111 2211 11112233333322111 1122233
Q ss_pred ccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEEecChHHHHhccCEE
Q 005423 217 QRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v 292 (697)
+..+.+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|++ ++.+++|+.
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~ 131 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEH 131 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcC
Confidence 455678887776 444444 499999999999999999877765 566777764 88999988886 577788764
Q ss_pred EEEeCCeEEEE
Q 005423 293 CLLSNGNTLFF 303 (697)
Q Consensus 293 ~vL~~G~iv~~ 303 (697)
--++++++...
T Consensus 132 ~~v~~~~~~~~ 142 (185)
T smart00534 132 PGVRNLHMSAD 142 (185)
T ss_pred ccceEEEEEEE
Confidence 44445554443
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=145.65 Aligned_cols=162 Identities=27% Similarity=0.297 Sum_probs=120.1
Q ss_pred cceeeeeeeEEcCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCC
Q 005423 123 DKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL 197 (697)
Q Consensus 123 ~~iL~~vs~~v~~G-----e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l 197 (697)
+..+.+..+.++.| |++..+|+||.||||+++.++|+++|+. .|+|- .-.++|-+|...-=...
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p---------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIP---------VLNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCccc---------ccceeccccccCccccc
Confidence 45566666666665 6799999999999999999999998875 24432 23467777764333355
Q ss_pred CHHHHHHHH-----------H----HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005423 198 TVREYLYYS-----------A----LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 198 TV~e~l~~~-----------~----~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 262 (697)
||++.+.-- . -+......++...+|||||.|||+||..|-..+++.+.|||.+-||++.+..--+
T Consensus 418 tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred hHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 788776321 1 1222334456678999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 263 TLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 263 ~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.+++.- +.++|-.++-|+ -...--++||+++..
T Consensus 498 vikRfilhakktafvVEhd-fImaTYladrvivf~ 531 (592)
T KOG0063|consen 498 VIKRFILHAKKTAFVVEHD-FIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHhccchhhhhhhH-HHHHHhhcceeEEEe
Confidence 999986 556676665554 334445799988654
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=145.74 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc-
Q 005423 220 NGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF- 289 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~- 289 (697)
..+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 469999999999999886 699999999999999999999999988764 346777777753 444443
Q ss_pred -CEEEEEeCCeE
Q 005423 290 -DRICLLSNGNT 300 (697)
Q Consensus 290 -D~v~vL~~G~i 300 (697)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=135.03 Aligned_cols=119 Identities=24% Similarity=0.262 Sum_probs=82.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCccEEEEcCccccC-CCCCHHHHHHHHHHcCCCc
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~e~l~~~~~l~l~~ 213 (697)
..++|.||||+|||||||.++. .+.. . |..... ....++|..|....+ ...++.+++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~-~---G~~v~a------~~~~~~~~d~i~~~l~~~~si~~~~S~-------- 91 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH-I---GSFVPA------DSATIGLVDKIFTRMSSRESVSSGQSA-------- 91 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh-C---CCeeEc------CCcEEeeeeeeeeeeCCccChhhccch--------
Confidence 7899999999999999999984 3322 1 443321 123467776654322 22233333210
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc---CCEEEEEEecCh
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAST---GCTLLFTINQSS 282 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~---g~tvi~tih~~~ 282 (697)
+ .-|-||++++++++.+|+++|+|||++|+|+.....+ ...++++.+. +.++|+++|...
T Consensus 92 f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 92 F---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred H---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 0 3578999999999999999999999999999765444 5688888764 247888888753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-13 Score=159.37 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=93.6
Q ss_pred eeeEEcCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHH
Q 005423 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 129 vs~~v~~G-e~~aIiG~sGsGKSTLl~~L~G~-~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|..+ ....++|..|....+. -.+++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~~i~---~~~si-- 379 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFADIG---DEQSI-- 379 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheeeecC---hHhHH--
Confidence 68888877 99999999999999999999987 22221 3 11110 0112344434322111 11221
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEEecCh
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~g~tvi~tih~~~ 282 (697)
....+.+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+ ..+|+.+.+.|.++|++||+..
T Consensus 380 ----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 380 ----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred ----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 233467999999999998876 89999999999999999999988 5788888888999999888764
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-12 Score=127.94 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.++ .-+|+++|++ .+++.+|+.+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v 211 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGV 211 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--cccccccccccc
Confidence 389999999999997663 467899999999999999999999999998754 4466667874 688999998876
Q ss_pred e
Q 005423 296 S 296 (697)
Q Consensus 296 ~ 296 (697)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 4
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=120.15 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=157.4
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--HHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHH
Q 005423 415 RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GHS--LSSV----VTRVAAIFVFVSFNSLLNIAGVPA-LMKEIKT 486 (697)
Q Consensus 415 R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l-~~~--~~~i----~~r~g~lff~~~~~~~~~~~~v~~-~~~er~v 486 (697)
|+++..+|||.....-+++-+++.+++|.++-+. ++. ..+. +--.|.+.+.+...+... +... .-.|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~--~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS--GISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHhCH
Confidence 6778899999999999999999999999887543 211 1111 111233332222222221 1111 1122233
Q ss_pred hHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 005423 487 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 566 (697)
Q Consensus 487 f~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~ 566 (697)
+.|=+ ..=-+...|++++.+.+++..++..+++.++.|++.+++. ..++.+++..++..++..++|.++++..++.+
T Consensus 79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33322 2333578899999999999999999999999998877654 34555555566667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhcCccc
Q 005423 567 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISS 646 (697)
Q Consensus 567 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~~~~~ 646 (697)
.+..+.+.+..+++++||.+.|.+.+|+ |.+|+.+++|.+|+.|++-..-..+ +
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~---------------------~--- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGV---------------------S--- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCC---------------------C---
Confidence 8888888999999999999999999996 6677999999999999855322211 0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHH
Q 005423 647 KSNSKWGNLLVLFLMAIGYRLLLFV 671 (697)
Q Consensus 647 ~~~~~w~~~~iL~~~~v~~~~l~~i 671 (697)
...+.|.++++|+++.+++.+++..
T Consensus 210 ~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 PTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 0123567888999988888877653
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=125.66 Aligned_cols=141 Identities=19% Similarity=0.191 Sum_probs=91.1
Q ss_pred EEcCCcEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTL-l~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
-+++|++++|.|+|||||||| ++.+++..+++. ..+++.. + .+..+.+.....++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~~~yi~~---------------e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---SVSYVST---------------Q------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---cEEEEeC---------------C------CCHHHHHHHHHHhC
Confidence 367999999999999999999 689998765432 2233321 1 13333333322222
Q ss_pred CCc-------c--ccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCE
Q 005423 211 LPG-------F--FCQRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVSALLMMVTLKKLASTGCT 273 (697)
Q Consensus 211 l~~-------~--~~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgL----D~~~~~~i~~~L~~l~~~g~t 273 (697)
..- . .......+|+++.++-.+.+.+-. +|+++++||||+++ |+....++++.++++++.|.|
T Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~t 155 (230)
T PRK08533 76 YDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKV 155 (230)
T ss_pred CchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCE
Confidence 100 0 001112467776666555554433 69999999999999 888888999999999888888
Q ss_pred EEEEEecChH------HHHhccCEEEEEe
Q 005423 274 LLFTINQSST------EVFGLFDRICLLS 296 (697)
Q Consensus 274 vi~tih~~~~------~i~~~~D~v~vL~ 296 (697)
+++++|+... .+..++|-|+.|+
T Consensus 156 vi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 156 IILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EEEEecccccccccceeEEEeeeEEEEEE
Confidence 8886554321 1244678888776
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=124.21 Aligned_cols=133 Identities=18% Similarity=0.227 Sum_probs=89.2
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
+.+.+|+++.+++|++++|.||||+||||+++++++ .+.+.. |..... .. -.++|..|-...+ ...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a-~~-----~~~~~~~~i~~~~---~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPA-SS-----ATLSIFDSVLTRM---GASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEc-Cc-----eEEeccceEEEEe---cCcc
Confidence 357899999999999999999999999999999999 333332 554332 11 1233333221111 1111
Q ss_pred HHHHHHHcCCCccccccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCEEEEE
Q 005423 202 YLYYSALLQLPGFFCQRKNGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAST-GCTLLFT 277 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LS--GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~-g~tvi~t 277 (697)
++ ..++| ..|-+|++-...-+.+|+++|+|||.+|.|+.....+ ...++.+.+. +.++|++
T Consensus 86 ~~---------------~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 86 SI---------------QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred cc---------------ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 11 11222 2456666666666789999999999999887776664 5677777765 8899998
Q ss_pred EecCh
Q 005423 278 INQSS 282 (697)
Q Consensus 278 ih~~~ 282 (697)
+|.+.
T Consensus 151 TH~~~ 155 (222)
T cd03287 151 THYPS 155 (222)
T ss_pred cccHH
Confidence 88763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-12 Score=115.87 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=58.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCccEEEEcCccccCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (697)
..+|+++++.+++||+++|+||||||||||++++. +|++.++|.+... ..+..++++|+ ++ ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 36899999999999999999999999999999986 2899999987421 22346777776 44 45
Q ss_pred CHHHHHHHH
Q 005423 198 TVREYLYYS 206 (697)
Q Consensus 198 TV~e~l~~~ 206 (697)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-11 Score=120.42 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPT-----sgLD~~~~~~i~~~L~~l~~ 269 (697)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999974
|
|
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=115.89 Aligned_cols=151 Identities=18% Similarity=0.132 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005423 497 GALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 576 (697)
Q Consensus 497 ~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~ 576 (697)
+...++++|++..++..+++++++..+.|++.|++.. .++.+++.+++..++..+++.++++++++...+ +...+.
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567799999999999999999999999999999874 566777788888899999999999999876543 344445
Q ss_pred HHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhcCccccCCCchhHHH
Q 005423 577 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSKSNSKWGNLL 656 (697)
Q Consensus 577 ~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~~~ 656 (697)
.+.++++|.+.|.+.+|+ |..|+.|++|++|+.+++-...+.|. ....|.+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------------~~~~~~~~~ 186 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGGN-------------------------DGTLWQAVA 186 (208)
T ss_pred HHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCCc-------------------------HHHHHHHHH
Confidence 566677888899999996 66779999999999999876554320 123578889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 005423 657 VLFLMAIGYRLLLFVLLYLRVK 678 (697)
Q Consensus 657 iL~~~~v~~~~l~~i~L~~~~~ 678 (697)
+|+++.+++.++++...|+++|
T Consensus 187 ~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 187 VLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999988887775543
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=112.04 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=142.1
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH--HhHhhccCCCcc
Q 005423 421 SREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVT-RVAAIFVFVSFNSLLNIAGVPALMKEIK--TYASEESNMHSG 497 (697)
Q Consensus 421 ~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~-r~g~lff~~~~~~~~~~~~v~~~~~er~--vf~rE~~~g~Y~ 497 (697)
+|||.....-+.+.+++-++++.+|-+-. +.+..+. ..|.+-+...+.+.+..+ -....||. .+.|=+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQA--IAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhCHHHHHhcCCC-c
Confidence 69999999889988888888888776521 1111111 222222222121111111 12233433 4444444433 6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005423 498 ALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK---DVYWSILTLIS 574 (697)
Q Consensus 498 ~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~---~~~~a~~~~~~ 574 (697)
...|+++|++..++..++..+++. +++++.|++.....+ ..++.+.+..+.+.+++.+++++.+ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 889999999998888877765555 556677988754433 3333444455556677777777764 44444777788
Q ss_pred HHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhcCccccCCCchhH
Q 005423 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSKSNSKWGN 654 (697)
Q Consensus 575 ~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~ 654 (697)
+..+++++||.+.|.+.+|+ |..|+.+++|++|+.+++-.--..+ - .....|.+
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~----------------------~--~~~~~~~~ 209 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVS----------------------V--DTFGAVRD 209 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCC----------------------C--ChhhHHHH
Confidence 88899999999999999996 7778999999999999765431111 0 11235778
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005423 655 LLVLFLMAIGYRLLLFVLLY 674 (697)
Q Consensus 655 ~~iL~~~~v~~~~l~~i~L~ 674 (697)
+++++++.+++..++....|
T Consensus 210 ~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888887777666554
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=141.97 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +++||+++|+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 35899999999999999985 699999999999999999999999999984 899999999874 44689999999
Q ss_pred eCCe
Q 005423 296 SNGN 299 (697)
Q Consensus 296 ~~G~ 299 (697)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=132.73 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=106.5
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------------CCCccEEEEcC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------------MPYGSYGFVER 189 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------------~~~~~~~yv~Q 189 (697)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.-. ...+.+.++.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 9999999999999999999999999999988764 99998664321 01245677755
Q ss_pred ccc--cCC------CCCHHHHHHHHHHcCCCccccccCCCCCH-HHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHH
Q 005423 190 ETT--LIG------SLTVREYLYYSALLQLPGFFCQRKNGLPC-GERRRVRIARELVMRPHVLFIDEP--LYHLDSVSAL 258 (697)
Q Consensus 190 ~~~--l~~------~lTV~e~l~~~~~l~l~~~~~~~~~~LSG-GqrqRv~IA~aL~~~P~iLlLDEP--TsgLD~~~~~ 258 (697)
-+. ... .+|+.|.++- .+..-. --...|+- -|-+| ++. +.+.|| |+|+|+....
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~---~g~~Vl--l~~Dsltr~A~A~r-----Eis-----l~~ge~P~~~G~dp~~~~ 286 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRD---QGLNVM--LMMDSVTRVAMAQR-----EIG-----LAVGEPPTTKGYTPSVFA 286 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---CCCcEE--EEEeChHHHHHHHH-----HHH-----HhcCCCCccccCCHHHHH
Confidence 332 110 1122222210 000000 00000100 00111 110 112365 6799999999
Q ss_pred HHHHHHHHHHH--cCC-----EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 259 LMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 259 ~i~~~L~~l~~--~g~-----tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
.+.++++++.. +|. ||++..|+.. + .+||++..+.+|+++..++..+
T Consensus 287 ~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 287 ILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHH
Confidence 99999999984 575 8888777654 3 6899999999999999998765
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=111.59 Aligned_cols=237 Identities=15% Similarity=0.025 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005423 409 VAVLTWRSLLIMSRE-WKYYWLRLILCMILTLCVGTVFSGLGHSLSS--VVT--RVAAIFVFVSFNSLLNIAGVPALMK- 482 (697)
Q Consensus 409 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~--i~~--r~g~lff~~~~~~~~~~~~v~~~~~- 482 (697)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ ..+ --|.+-+.+++.++.... ...+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~-~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETI-YATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455669999999999 9999889999998888888887543111111 111 112222222222211100 011111
Q ss_pred -hHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005423 483 -EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 561 (697)
Q Consensus 483 -er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~ 561 (697)
|+..++|-+..-. ++..+.+|+++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|++++++
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333 678899999999877777766665555543 344443 334444455566677778999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhh
Q 005423 562 WKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSA 641 (697)
Q Consensus 562 ~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~ 641 (697)
.++.+.+..+...+..+++++||.+.|.+.+|+ |..++.+++|++|+.|++=.. +.|
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~-~~g-------------------- 219 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPV-MLG-------------------- 219 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHH-HhC--------------------
Confidence 999998888889999999999999999999996 666789999999999975433 211
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005423 642 YDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLR 676 (697)
Q Consensus 642 ~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~ 676 (697)
- ...+.|.++++++++.+++.+++....|++
T Consensus 220 --~--~~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 220 --G--PGTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred --C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 011245677888888888888777665543
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-11 Score=132.80 Aligned_cols=159 Identities=25% Similarity=0.321 Sum_probs=113.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCCCCC--------c---cEEEEcCcc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSEMPY--------G---SYGFVERET 191 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-----------~i~G~~~~~~~--------~---~~~yv~Q~~ 191 (697)
+||++++++|.||-||||-|++|+|.++|.- |.- .+.|...+..+ + ..-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 4899999999999999999999999998863 221 00111110000 0 011222222
Q ss_pred ccCCCCCHHHHHHH----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 192 TLIGSLTVREYLYY----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 192 ~l~~~lTV~e~l~~----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
... ..+|.++|.- ...+.|....++....|||||-||.+||.+-+++.++.++|||.+-||...+..-.
T Consensus 175 r~~-k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 175 RAV-KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHH-HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 211 2355555532 12334555566777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
..++.+.....=||++.|+. +..--+.|-+.+|..
T Consensus 254 ~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred HHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 99999998778888866765 456667899998863
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-11 Score=128.23 Aligned_cols=74 Identities=18% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 221 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
-+|+||+|+++||..|+ .+|++++||||+++||...+..+++.|.+.. .++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCC-----CCCCce
Confidence 58999999999999999 8999999999999999999999998886532 344433332 357999
Q ss_pred EEEEeCCeEEE
Q 005423 292 ICLLSNGNTLF 302 (697)
Q Consensus 292 v~vL~~G~iv~ 302 (697)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999988753
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=146.88 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=95.9
Q ss_pred eeEEc-CCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHH
Q 005423 130 NGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 130 s~~v~-~Ge~~aIiG~sGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
++.+. .+.++.|.|||++||||+||.++... -... | ..+... ...++++.+-..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~---G------~~vpa~~~~~i~~~~~i~~-------------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKS---G------LPIPANEPSEIPVFKEIFA-------------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHh---C------CCcccCCCccccccceEEE--------------
Confidence 34444 46789999999999999999986431 0110 1 111000 011222222111
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEEecChHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tvi~tih~~~~~i 285 (697)
..+.........+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+. .+++.+.+.|.++|++||++. ..
T Consensus 377 -~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~ 453 (782)
T PRK00409 377 -DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LK 453 (782)
T ss_pred -ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HH
Confidence 11112223345578999999999999998 899999999999999999998885 467788888899999888853 33
Q ss_pred HhccCEEEEEeCCeEEEE
Q 005423 286 FGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 286 ~~~~D~v~vL~~G~iv~~ 303 (697)
...+|+..++ ++.+.+.
T Consensus 454 ~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 454 ALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHhcCCCeE-EEEEEEe
Confidence 3445555443 5666553
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-09 Score=109.72 Aligned_cols=237 Identities=12% Similarity=0.078 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CC------CH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005423 406 ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GH------SL---SSVVTRVAAIFVFVSFNSLLNIA 475 (697)
Q Consensus 406 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l-~~------~~---~~i~~r~g~lff~~~~~~~~~~~ 475 (697)
+++++.+++|+++...|||..+..-+++.+++-+++|.+|-.. +. +. -...--.|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3689999999999999999999999999999999999998542 11 10 111112233322222222211
Q ss_pred HHHHHHHh--HHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 005423 476 GVPALMKE--IKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEG 553 (697)
Q Consensus 476 ~v~~~~~e--r~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~s 553 (697)
+. ....| +..+.+=+.... +...+.+++++..+-..++..++..++.++ .|.+.....++.....+++..++..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11222 223333343333 677799999999987777776655555443 36655543444444444556667779
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCc-ccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccc
Q 005423 554 LMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTI 632 (697)
Q Consensus 554 l~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~-~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~ 632 (697)
+|.++++++++.+....+.+.+..+++..+|.+.+.+.+|. |-|..|+.+++|++|..|++=.- +.|
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g----------- 223 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYG----------- 223 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhC-----------
Confidence 99999999999888888888888899999999988877642 23777799999999999865421 111
Q ss_pred cHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 005423 633 SGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 675 (697)
Q Consensus 633 ~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~ 675 (697)
+ ..|..+++++++.+++.+++....|+
T Consensus 224 ----------~------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 224 ----------Q------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------C------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 12555667777777777777665544
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-11 Score=116.08 Aligned_cols=82 Identities=22% Similarity=0.092 Sum_probs=67.2
Q ss_pred ccccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEecChH--
Q 005423 215 FCQRKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST-- 283 (697)
Q Consensus 215 ~~~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~tih~~~~-- 283 (697)
.+..+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 34556789999998 4555555677999999999999999 888888999999999889999998876542
Q ss_pred ------HHHhccCEEEEEe
Q 005423 284 ------EVFGLFDRICLLS 296 (697)
Q Consensus 284 ------~i~~~~D~v~vL~ 296 (697)
.+..+||.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 2678899999997
|
A related protein is found in archaea. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=127.48 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 220 NGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~---------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3699999999999999999 99999999999999999999999999764 678888888753
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=137.44 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 221 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||++|+|. +...||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 589999999999999997 5899999999999999999999999999974 688999999874 558999999998
Q ss_pred CCe
Q 005423 297 NGN 299 (697)
Q Consensus 297 ~G~ 299 (697)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 653
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-11 Score=146.27 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=74.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
..+.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|.+ ..
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~ 1022 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EF 1022 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HH
Confidence 345678999999999999999986 7999999999999999999999999999988899999877876 57
Q ss_pred HHhccCEEEEEeCC
Q 005423 285 VFGLFDRICLLSNG 298 (697)
Q Consensus 285 i~~~~D~v~vL~~G 298 (697)
...++|+|.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 88899999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-11 Score=123.91 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=98.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEe-CC--CCC---ccEEEEcCccccCCCC---CHH
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV--NGAK-SE--MPY---GSYGFVERETTLIGSL---TVR 200 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i--~G~~-~~--~~~---~~~~yv~Q~~~l~~~l---TV~ 200 (697)
.+.+||.++|+||+|+|||||++.|++...... ....+.+ -|.+ .+ ... ..+-.+.+-+. .+.. ..+
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-CCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 456899999999999999999999999876531 1123222 2221 10 000 11222222221 1110 001
Q ss_pred HHHHHHHHc---C------------CCc----cccccCCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 201 EYLYYSALL---Q------------LPG----FFCQRKNGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 201 e~l~~~~~l---~------------l~~----~~~~~~~~LSGGq--------rqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
..+..+... + ++. ........+|||| +||+++||++..+++|.+| ||+.+|
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d 167 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVD 167 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheec
Confidence 111111111 1 000 0112235689999 9999999999999999999 999999
Q ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 254 SVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 254 ~~~~~~-i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+.+... ++ +.++...+.|.|+.+|.. .....+|.|.+|+.|++
T Consensus 168 ~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 168 TGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred CCCcccchH--HHHHhcCCCcEEEEchHH--hhCCCCCeEEEcCCCCc
Confidence 655544 54 556655667888877764 34578999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-11 Score=125.88 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=96.6
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CccEEEEcCccccCCCCCHHHHHHHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+++.+++|+.++|.||+|||||||+++|++.+++.. |.+.+..... ... ...+..+.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 556788999999999999999999999999998764 7777754221 111 112222211100
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
.+ .++-...-.++.+|-.+|+++++|||.+ .++.++++.+.....+++.|+|..+ +.
T Consensus 200 -------------~~-~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~ 256 (308)
T TIGR02788 200 -------------QG-LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PE 256 (308)
T ss_pred -------------CC-cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HH
Confidence 00 1111112245567888999999999996 3456777777643345688888875 55
Q ss_pred hccCEEEEEeCCeEEEEeCchhhH
Q 005423 287 GLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 287 ~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+..||+..|..|++...|.+.+.+
T Consensus 257 ~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 257 EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhhccccccCCCHHHH
Confidence 669999999999988888877765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=110.63 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=79.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-HHHHcCCC--cc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY-YSALLQLP--GF 214 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~--~~ 214 (697)
+++|.|+||+||||+++.+++...... |.|.+.+ .+.... ...+.+. +....... ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~--------------~e~~~~---~~~~~~~~~~~~~~~~~~~~ 60 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKG---GKVVYVD--------------IEEEIE---ELTERLIGESLKGALDNLII 60 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEE--------------CCcchH---HHHHHHhhhhhccccccEEE
Confidence 378999999999999999998765432 5554432 221110 0111110 00000000 01
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
........+.++.++...+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 61 VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred EEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 112223445666778888999999999999999994 4555556666677666666799999999887543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=113.80 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=92.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC--
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP-- 212 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~---~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~-- 212 (697)
.++|+|++|||||||++.|++.+.+. | +.+.|.- .....+..++...+ +... +...+ .....+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~----G-~~~~g~~~~~~~~~~~~~~~~~~~--~~~~----~~~~l-~~~~~~~~ 69 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE----G-YKVGGFYTEEVREGGKRIGFKIID--LDTG----EEGIL-ARVGFPSR 69 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C-CeEEEEEcHHHHhcCCccceEEEE--cCCC----CeEEc-cccCCCCC
Confidence 37899999999999999998765432 2 1111111 00011122222111 0000 00000 001111
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 213 ~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
....+....+||+++-+..+++..+.+|+++++|||. .++..+ ..+.+.+.++.+.|.++|+++|.. .+...+|++
T Consensus 70 ~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~-~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i 145 (174)
T PRK13695 70 PRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIG-KMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEI 145 (174)
T ss_pred CceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCC-cchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHH
Confidence 1112334569999999999999999999999999952 233322 445677777767789999988863 566789999
Q ss_pred EEEeCCeEEEE
Q 005423 293 CLLSNGNTLFF 303 (697)
Q Consensus 293 ~vL~~G~iv~~ 303 (697)
..+.+|++++.
T Consensus 146 ~~~~~~~i~~~ 156 (174)
T PRK13695 146 KSRPGGRVYEL 156 (174)
T ss_pred hccCCcEEEEE
Confidence 99999998765
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-11 Score=138.04 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 220 NGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~----------~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
..||||||||++||++|+ .+|++||||||| ++||+.....+.+.|+++ .|.|||+++|++ .....
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDPQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hchhh
Confidence 469999999999999887 599999999998 789999999999999998 578999988985 35578
Q ss_pred cCEEEEEeC-CeE
Q 005423 289 FDRICLLSN-GNT 300 (697)
Q Consensus 289 ~D~v~vL~~-G~i 300 (697)
||++++|.+ |+.
T Consensus 543 ~d~~~~l~~~~~~ 555 (562)
T PHA02562 543 FDRHLKMEKVGRF 555 (562)
T ss_pred hhcEEEEEEECCe
Confidence 999999985 553
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-10 Score=113.06 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=89.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
+.+-+|+++..++|++++|.||||+||||+++.+++..--.. . |.........++++ +.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~------G~~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--M------GMDVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--c------CCccCccccEeccc---cEEEEecCcccc
Confidence 467889999999999999999999999999999987521100 0 11111111112221 222222222222
Q ss_pred HHHHHHcCCCccccccCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCEEEEEE
Q 005423 203 LYYSALLQLPGFFCQRKNGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST-GCTLLFTI 278 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSG--GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~-g~tvi~ti 278 (697)
+. .++|. .|-+|++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|+++
T Consensus 86 ~~---------------~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~T 150 (218)
T cd03286 86 IM---------------KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFST 150 (218)
T ss_pred cc---------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 21 12221 456666666666789999999999999999999888888 7888765 88999988
Q ss_pred ecCh
Q 005423 279 NQSS 282 (697)
Q Consensus 279 h~~~ 282 (697)
|...
T Consensus 151 H~~e 154 (218)
T cd03286 151 HYHS 154 (218)
T ss_pred ccHH
Confidence 8753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-10 Score=117.60 Aligned_cols=63 Identities=25% Similarity=0.386 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 220 NGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888876788999999873
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-10 Score=125.50 Aligned_cols=167 Identities=17% Similarity=0.097 Sum_probs=117.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
+.-++++..+. ...++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.|.+.|+..
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGerg-------- 194 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGERG-------- 194 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCCc--------
Confidence 44445554443 234578885 9999999999999999999999999999987754 7777666431
Q ss_pred EEcCccccCCCCCHHHHHHHHHHc-CCCc-cccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH
Q 005423 186 FVERETTLIGSLTVREYLYYSALL-QLPG-FFCQRKNGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVS 256 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~l-~l~~-~~~~~~~~LSGGqrqRv~IA~aL~-------~~P~iLlLDEPTsgLD~~~ 256 (697)
.+|.|.+...... .+.. ..-....+-|.|+|+|++.+.+.+ .++-+|++||||+..|+.
T Consensus 195 -----------~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~- 262 (432)
T PRK06793 195 -----------REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR- 262 (432)
T ss_pred -----------ccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH-
Confidence 3555554422111 1111 111344788999999999998888 789999999999999996
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 257 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 257 ~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
.+|-..+.+.-..|.+..+.+|++ ++++|.-...+|.|...+..
T Consensus 263 -reisl~~~e~p~~G~~~~~~s~l~-----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 263 -RSVDIAVKELPIGGKTLLMESYMK-----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred -HHHHHHhcCCCCCCeeeeeeccch-----hHHHHhccCCCcceEEEEEE
Confidence 555556666665577877766643 34555555678888776654
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-07 Score=97.92 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHH----HHHH-
Q 005423 405 SATRVAVLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGL-GHSLSSVVTRVAAIFVFVSFNSLLN----IAGV- 477 (697)
Q Consensus 405 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~lf~~l-~~~~~~i~~r~g~lff~~~~~~~~~----~~~v- 477 (697)
.++-++.+.+|+.+...||+.. ...-+++.++..+++|.++-.. +.. .+. + -..|++.....+.. ....
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~ 81 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVA 81 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999854 3334455556667777665321 110 111 1 11222222222111 1111
Q ss_pred HHHHHhH--HHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 005423 478 PALMKEI--KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLM 555 (697)
Q Consensus 478 ~~~~~er--~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~ 555 (697)
..+..++ ....|=+.. --+...+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....+
T Consensus 82 ~~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~g 158 (257)
T PRK15066 82 SSFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGG 158 (257)
T ss_pred HHHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHH
Confidence 1222232 111111222 346778899999987766666665555555544466643 22223333333333334458
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHH
Q 005423 556 LVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGY 635 (697)
Q Consensus 556 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~ 635 (697)
++++.+.++.+....+.+.+..+++..+|.+.|.+.+|+ |.+|+.+++|++|..|++=.. +
T Consensus 159 l~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~-~---------------- 219 (257)
T PRK15066 159 LINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYG-F---------------- 219 (257)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHH-H----------------
Confidence 888888888888888888889999999999999999986 667799999999999866422 1
Q ss_pred HHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005423 636 QALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 678 (697)
Q Consensus 636 ~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~ 678 (697)
+|. .....|.++++++++.+++.+++....|+.++
T Consensus 220 ------~g~--~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 220 ------LGI--SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ------cCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111 11235788899999999888888877765544
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-10 Score=135.29 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=69.0
Q ss_pred cccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 216 CQRKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 216 ~~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
...+..|||||++ |++||++++.+|+++|+||||++||+..+..+.+.|..++..+.+||+++|++ ++...|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhC
Confidence 3456789999999 55566678899999999999999999999999999999887788899988886 466899
Q ss_pred CEEEEEe
Q 005423 290 DRICLLS 296 (697)
Q Consensus 290 D~v~vL~ 296 (697)
|++++|.
T Consensus 861 d~~~~l~ 867 (880)
T PRK03918 861 DYVIRVS 867 (880)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=123.01 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=83.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
++....|||||.||+-||..|=.+= =+.+||||+-||-+.--..++++|++|++.|-|+|++-|++ ++...||+|+
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iI 553 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHII 553 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEE
Confidence 4556899999999999999997763 36799999999999999999999999999999999977764 6778999999
Q ss_pred EE------eCCeEEEEeCchhhHHh
Q 005423 294 LL------SNGNTLFFGETLACLQH 312 (697)
Q Consensus 294 vL------~~G~iv~~G~~~~~~~~ 312 (697)
=| ++|+||+.|+++++++.
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 88 46899999999998754
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=103.97 Aligned_cols=139 Identities=22% Similarity=0.258 Sum_probs=84.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC---CCCCC--ceeEEEECCEeCCC-------CCccEEEEcCccccCCCCCHHHHHH
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL---PHSAR--MYGEVFVNGAKSEM-------PYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~---~~~~~--~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
-++.|+|+||+||||||.+|+-.. +.++. .+|++...+..... +....||-.. ..|++....
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlR------AEs~yn~as 111 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLR------AESFYNVAS 111 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEe------hhHHHHHHH
Confidence 489999999999999999987543 33321 12333222211100 0111333222 222222222
Q ss_pred HHHHcCC-CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 205 YSALLQL-PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 205 ~~~~l~l-~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+...+.- .....+.-+..|-||-=---+.+. ..+--+.|||||-++|-+.-+..++..|+++++.|.-+|+.||.|.
T Consensus 112 ~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 112 YLDEADGEANYGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred HHHhhhhhcccCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 1111110 001122335678888654444444 4567899999999999999999999999999999988999999884
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=133.80 Aligned_cols=81 Identities=23% Similarity=0.185 Sum_probs=70.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh
Q 005423 216 CQRKNGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~--------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~ 287 (697)
.+.+..|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+++.|+||++++|.+ .....
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHh
Confidence 35678999999999999999996 8999999999999999999999999999998899999988854 34555
Q ss_pred ccCEEEEEeC
Q 005423 288 LFDRICLLSN 297 (697)
Q Consensus 288 ~~D~v~vL~~ 297 (697)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 6666777654
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=103.87 Aligned_cols=144 Identities=21% Similarity=0.278 Sum_probs=90.6
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 208 (697)
.+=+++|.++.|.|++|+|||||...++ +....+ +.+.+ +..+. +..+.+.-...
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~~~~y--------------~~~e~------~~~~~~~~~~~ 74 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----KKVYV--------------ITTEN------TSKSYLKQMES 74 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----CEEEE--------------EEcCC------CHHHHHHHHHH
Confidence 3457799999999999999999998874 222221 23322 22211 11111111111
Q ss_pred cCCC----------ccc---cccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHc
Q 005423 209 LQLP----------GFF---CQRKNGLPCGERRRVRIARELVM--RPHVLFIDEPLYH---LDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 209 l~l~----------~~~---~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsg---LD~~~~~~i~~~L~~l~~~ 270 (697)
++.. ... .......+.++++.+.....++. +|+++++||||+. +|......+++.++.+++.
T Consensus 75 ~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~ 154 (234)
T PRK06067 75 VKIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDL 154 (234)
T ss_pred CCCChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 1100 000 01123456788999999999998 9999999999965 4455555666667777778
Q ss_pred CCEEEEEEecChH------HHHhccCEEEEEeC
Q 005423 271 GCTLLFTINQSST------EVFGLFDRICLLSN 297 (697)
Q Consensus 271 g~tvi~tih~~~~------~i~~~~D~v~vL~~ 297 (697)
|.|+++++|++.. .+..++|-++.|+.
T Consensus 155 g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 155 GKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 9999998887542 14567888887863
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-09 Score=128.00 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=66.0
Q ss_pred ccCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CEEEEEEecChHHHHh
Q 005423 217 QRKNGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFG 287 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~I------A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~tih~~~~~i~~ 287 (697)
..+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .++|+++|++. ...
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence 3567899999999975 589999999999999999999999999999998654 33 3 47888888863 457
Q ss_pred ccCEEEEEe
Q 005423 288 LFDRICLLS 296 (697)
Q Consensus 288 ~~D~v~vL~ 296 (697)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 899999997
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=104.50 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=75.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC 216 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~ 216 (697)
+++|.||+||||||++++|++.+++.. .|.|...+.+.+... ....++.|...-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~--~~~i~t~e~~~E~~~~~~~~~i~q~~vg----------------------- 57 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNK--THHILTIEDPIEFVHESKRSLINQREVG----------------------- 57 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC--CcEEEEEcCCccccccCccceeeecccC-----------------------
Confidence 689999999999999999998876431 266655443322111 111222221100
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.....++ =+|+++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++ +.+..||++.|.
T Consensus 58 ~~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 58 LDTLSFE------NALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred CCccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 0001111 15788999999999999996 655433333 44567999999999875 346788887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-09 Score=129.83 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=67.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 216 CQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
...+..||||||+|++||++++ .+|+++||||||++||+.....+.++|+.+++ +.++|+++|++. ....||+
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~ 1160 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQ 1160 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhh
Confidence 4566789999999999999985 56799999999999999999999999999875 467888888864 3578999
Q ss_pred EEEEe
Q 005423 292 ICLLS 296 (697)
Q Consensus 292 v~vL~ 296 (697)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 98664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-08 Score=129.55 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=61.3
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEecChHHHH
Q 005423 218 RKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVF 286 (697)
Q Consensus 218 ~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~tih~~~~~i~ 286 (697)
..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||+++|++ ..+.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~ 1274 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVE 1274 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHH
Confidence 34689999999 99999999999999999999999999999999999988742 378899877765 4666
Q ss_pred hcc
Q 005423 287 GLF 289 (697)
Q Consensus 287 ~~~ 289 (697)
.+|
T Consensus 1275 ~~~ 1277 (1311)
T TIGR00606 1275 LLG 1277 (1311)
T ss_pred HHh
Confidence 654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-08 Score=118.74 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=60.2
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEecChHH--------HHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~--------i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|++... +.+.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 69999999999999998899999988887532 2368999999999998766643
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=84.84 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=79.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+|..+.|.||+|+||||+++.|++...... .+-+.++........ ..... ...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~---------~~~ 53 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEV----------------LDQLL---------LII 53 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccC----------------HHHHH---------hhh
Confidence 367899999999999999999999876531 134555443221100 00000 011
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------TLKKLASTGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~------~L~~l~~~g~tvi~tih 279 (697)
.........+++..+..++++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 54 VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 123335678888899888888888899999999999999988887665 22333345678888777
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.1e-09 Score=114.33 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=45.5
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (697)
+.+|++||+.+++||+++|+|||||||||||+ +|+..|.. .|+|.++|.+...
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECCC
Confidence 46899999999999999999999999999999 67766654 2489999987643
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-08 Score=126.15 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=67.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 217 QRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
..+..||||||++++||++|+. +|+++|||||+++||+.....+.++|++++.. ..+|+++|++. +...||++
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcHH--HHHhccee
Confidence 4567899999999999999985 67999999999999999999999999998754 66777788863 56899999
Q ss_pred EEEeC
Q 005423 293 CLLSN 297 (697)
Q Consensus 293 ~vL~~ 297 (697)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 98753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=93.79 Aligned_cols=116 Identities=23% Similarity=0.249 Sum_probs=77.2
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CccEEEEcCcc--ccCCCCCHHHH
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVERET--TLIGSLTVREY 202 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q~~--~l~~~lTV~e~ 202 (697)
+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ..+ ...++++.|.. ...+..++.+.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 33445677899999999999999999999999998765 8899877432 111 23345544432 23344555554
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEEecC
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLFTINQS 281 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t-vi~tih~~ 281 (697)
+. .+|-.+|++++++|--. ..+ .++++. +..|.. ++.|+|-.
T Consensus 93 l~-----------------------------~~lR~~pd~i~igEir~---~ea----~~~~~a-~~tGh~g~~~T~Ha~ 135 (186)
T cd01130 93 LR-----------------------------SALRMRPDRIIVGEVRG---GEA----LDLLQA-MNTGHPGGMTTIHAN 135 (186)
T ss_pred HH-----------------------------HHhccCCCEEEEEccCc---HHH----HHHHHH-HhcCCCCceeeecCC
Confidence 43 34456799999999863 332 234443 356777 88888865
Q ss_pred h
Q 005423 282 S 282 (697)
Q Consensus 282 ~ 282 (697)
+
T Consensus 136 s 136 (186)
T cd01130 136 S 136 (186)
T ss_pred C
Confidence 4
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=89.37 Aligned_cols=168 Identities=26% Similarity=0.314 Sum_probs=119.3
Q ss_pred HHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 005423 484 IKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVA-SIW 562 (697)
Q Consensus 484 r~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~-~~~ 562 (697)
...+.|=..+-..+ ..+++++.+...-...+...+...++.+..|.. ....+..+...+.+..+...++|.+++ ...
T Consensus 117 ~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 194 (286)
T COG0842 117 FGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAK 194 (286)
T ss_pred hCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444443 456666666666666566666666666666632 334455556666667777778888666 366
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhc
Q 005423 563 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAY 642 (697)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~ 642 (697)
++.+.+..++..+..++++++|.+.|.+.+|. |..|+.++.|.+|+.+++-.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~--------------------- 251 (286)
T COG0842 195 SQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGG--------------------- 251 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCC---------------------
Confidence 77888888888999999999999999999996 7778999999999999876543321
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005423 643 DISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 679 (697)
Q Consensus 643 ~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~ 679 (697)
. .....|.++++|+++.+++.+++.+.+|++.+.
T Consensus 252 -~--~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 252 -W--RNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -C--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 112267888999999999999999988877653
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-08 Score=119.12 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=66.2
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEecChHH
Q 005423 218 RKNGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTE 284 (697)
Q Consensus 218 ~~~~LSGGqrq------Rv~IA~aL~~~-----P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~tih~~~~~ 284 (697)
.+..||||||+ |++||++++.+ | +++|+||||++||+.....+.++|+.+...|. +||+++|++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 45689999999 99999999864 3 67999999999999999999999999986664 7888888863
Q ss_pred HHhccCEEEEEeC
Q 005423 285 VFGLFDRICLLSN 297 (697)
Q Consensus 285 i~~~~D~v~vL~~ 297 (697)
....||+++.|..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 3467999999964
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=97.53 Aligned_cols=134 Identities=23% Similarity=0.312 Sum_probs=75.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCccEEEEcCccccCCCCCHHHHHH-HHHHcCCCc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLY-YSALLQLPG 213 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~~ 213 (697)
|++..|+||+|+|||||+-.++=-... |.=.+++ ... .....+-|+.-|+.. -.+.+.+. +...+.+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~---~~i~~Rl~~i~~~~~~~~ 71 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR---EEIHRRLEAILQHLEPDD 71 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---HHHHHHHHHHHhhcCCcC
Confidence 678899999999999999877632211 2111110 110 112334555433321 12232222 112221111
Q ss_pred cccccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHH-c
Q 005423 214 FFCQRKNGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY------HLDSVSALLMMVTLKKLAS-T 270 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~----------------aL~~~P~iLlLDEPTs------gLD~~~~~~i~~~L~~l~~-~ 270 (697)
...+. -..+|+.|++.+++ ....+|+++++| |++ .+|+.....+++.|+++++ .
T Consensus 72 ~~~rl--~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~ 148 (239)
T cd01125 72 AGDRL--FIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQT 148 (239)
T ss_pred cccce--EEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 11111 11245555555443 335799999999 775 4799999999999999985 4
Q ss_pred CCEEEEEEecC
Q 005423 271 GCTLLFTINQS 281 (697)
Q Consensus 271 g~tvi~tih~~ 281 (697)
|.+||+++|..
T Consensus 149 g~avl~v~H~~ 159 (239)
T cd01125 149 GAAILLVHHVR 159 (239)
T ss_pred CCEEEEEeccC
Confidence 88999966654
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-07 Score=98.99 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=77.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
.+++.++.|.||+||||||++++|.+.++.. ..|.|.....+.+... .....+.|...
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~ev------------------- 177 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQREV------------------- 177 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEcccc-------------------
Confidence 3578899999999999999999999876532 1266655443322110 00111111100
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
+. ++.--.-+|+++|-.+|+++++||+. |..++...++ .+..|.+|+.|+|..+ +....+|
T Consensus 178 ---------g~-~~~~~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~R 238 (343)
T TIGR01420 178 ---------GL-DTLSFANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIER 238 (343)
T ss_pred ---------CC-CCcCHHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHH
Confidence 00 00111234677889999999999997 8888765444 3567999999888764 3355677
Q ss_pred EEEE
Q 005423 292 ICLL 295 (697)
Q Consensus 292 v~vL 295 (697)
++-|
T Consensus 239 l~~~ 242 (343)
T TIGR01420 239 IIDV 242 (343)
T ss_pred HHHh
Confidence 6544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-09 Score=117.86 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=94.0
Q ss_pred eeee-eeEEcCCcEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccc----c-
Q 005423 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETT----L- 193 (697)
Q Consensus 126 L~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L--~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~----l- 193 (697)
|+.+ .+=+.+|.++.|.|++|||||||...+ .|....+. ..+++....... ..+.+|+-.++.. +
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~ 86 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLF 86 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceE
Confidence 4443 445678999999999999999999866 45443232 445555432100 0112333222110 0
Q ss_pred CCCCCHHH-HHHHHHHcCCCccccccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 194 IGSLTVRE-YLYYSALLQLPGFFCQRKNGLPCGERRRVRIA--RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 194 ~~~lTV~e-~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
+......+ .......+.+.+..++....+|+|++|||.|+ .+|...|+.. ...+..+.++++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~ 156 (484)
T TIGR02655 87 ILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI 156 (484)
T ss_pred EEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence 00000000 00000111122223344568999999999999 6666665544 46778899999999989
Q ss_pred CCEEEEEEecChHH-------H-HhccCEEEEEe
Q 005423 271 GCTLLFTINQSSTE-------V-FGLFDRICLLS 296 (697)
Q Consensus 271 g~tvi~tih~~~~~-------i-~~~~D~v~vL~ 296 (697)
|.|+|+++|+.... + ..+||.|+.|+
T Consensus 157 g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 157 GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 99999999875421 2 55899999997
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.7e-07 Score=99.10 Aligned_cols=150 Identities=17% Similarity=0.071 Sum_probs=96.9
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------------CCccEEEEcC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------------PYGSYGFVER 189 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------------~~~~~~yv~Q 189 (697)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|..... ..+.+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 4689999 9999999999999999999999999999987754 666555542110 0122223322
Q ss_pred ccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHH-----HHHHHHhh-CCCE------------------EEE
Q 005423 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRV-----RIARELVM-RPHV------------------LFI 245 (697)
Q Consensus 190 ~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv-----~IA~aL~~-~P~i------------------LlL 245 (697)
-+. |-++|.+. ++|.-+.- .-+| +.+
T Consensus 227 ~d~------------------------------~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ 276 (440)
T TIGR01026 227 SDQ------------------------------SPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAA 276 (440)
T ss_pred CCC------------------------------CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhc
Confidence 211 11222211 11111110 1111 234
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 246 DEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 246 DEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
.|| +.|+|+.....+-+++.+....+. ||++..|+. ...++|++.-+.+|+++..+...+.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhhC
Confidence 575 449999999999999999886555 555544443 2347999999999999998876553
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.2e-07 Score=101.95 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=109.1
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCccEEEEcCc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----------~~~~~~~yv~Q~ 190 (697)
..++++++ +.+.+||.++|+|+||+|||||+++|+|..+++..+-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 999999999999999999999999999998776423355555553321 123468999999
Q ss_pred cccCCCCCHHHHHHHHHHcCCCccccc--cCCCCC-HHHHHH-HHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHH
Q 005423 191 TTLIGSLTVREYLYYSALLQLPGFFCQ--RKNGLP-CGERRR-VRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTL 264 (697)
Q Consensus 191 ~~l~~~lTV~e~l~~~~~l~l~~~~~~--~~~~LS-GGqrqR-v~IA~aL~~~P~iLlLDEP--TsgLD~~~~~~i~~~L 264 (697)
...+..+++.+++...+...-....+- -...|+ --|-+| ++ +.+.|| +.|-.+..-..+-+++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REis-----------l~~ge~P~~~Gyp~svf~~l~~l~ 289 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIA-----------LSLGEPPATKGYPPSAFSIIPRLA 289 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHH-----------HhcCCCCcccCcCHHHHHHhHHHH
Confidence 999889999999876553211000000 000110 011111 11 134465 2367777777777777
Q ss_pred HHHH--H-cC-CEEEEEEecChHHHHh-ccCEEEEEeCCeEEEE
Q 005423 265 KKLA--S-TG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 303 (697)
Q Consensus 265 ~~l~--~-~g-~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~ 303 (697)
.+.- + .| .|.+-++.-+.+++.+ ++|.+.-+-||+|+..
T Consensus 290 ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 290 ESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred HHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 7753 1 23 5777777666544433 5788888889999864
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=96.26 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=48.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
++++.+..+.+|++++++||||+||||++..|++.+.... |. ..++++.+|.. ..++.|+|.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt~---RigA~EQLr 306 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDSY---RIGGHEQLR 306 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCcc---chhHHHHHH
Confidence 4566777788899999999999999999999999764322 31 24567777652 357888887
Q ss_pred HHH
Q 005423 205 YSA 207 (697)
Q Consensus 205 ~~~ 207 (697)
+.+
T Consensus 307 ~~A 309 (484)
T PRK06995 307 IYG 309 (484)
T ss_pred HHH
Confidence 643
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=106.14 Aligned_cols=79 Identities=25% Similarity=0.266 Sum_probs=69.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 217 QRKNGLPCGERRRVRIARELV------MR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~------~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
+....|||||+-.++||-+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|++++|++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 556889999999888877764 35 699999999999999999999999999998899999988875 67789
Q ss_pred cCEEEEEeC
Q 005423 289 FDRICLLSN 297 (697)
Q Consensus 289 ~D~v~vL~~ 297 (697)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999999863
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-06 Score=79.87 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred HhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005423 482 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS--LLMYFVLNFFMCLLVNEGLMLVVA 559 (697)
Q Consensus 482 ~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~--~f~~f~l~~~l~~~~~~sl~~~i~ 559 (697)
.|+.++.|-+..-. +...++++|++...-..+++.++..++.++ .|.+.... ..+.++++..++.+....++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766 688999999999998988888877777754 48876632 222333333344445556666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHH
Q 005423 560 SIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLL 615 (697)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~ 615 (697)
...++.+... ....++.++++.+|.+.|.+.+|+ |..|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence 6666655433 346677788888888899999996 8888999999999999874
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.1e-07 Score=89.86 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=61.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---CCC----CccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---EMP----YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~---~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
+++|.||||||||||.++|++++.. |.+.+-+.+. ... ....+...+.+.-+ ...........++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-----PKVVIISQDSYYKDLSHEELEERKNNNYDHPDAF---DFDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----CCeEEEEecccccccccccHHHhccCCCCCCCcc---cHHHHHHHHHHHH
Confidence 4799999999999999999998732 3343333221 000 01111112221111 1111111112233
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
..+....+....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 73 ~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 73 NGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 3333445556788888876655 5788999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=101.89 Aligned_cols=136 Identities=19% Similarity=0.187 Sum_probs=84.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
.+-+|+++. ..+.++.|.|||++||||+||.++-..- ... | ..+......++++. .++..
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~---G------~~VPa~~a~i~~~d---~I~tr------ 656 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQI---G------SFVPAESARIGIVD---RIFTR------ 656 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhc---C------CceeccceEecccC---eeeec------
Confidence 455666666 5678999999999999999999864310 000 1 11111111122211 11111
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEE
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLF 276 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~ 276 (697)
+. ..+.-..++|.=+.....++..|-. +++++|+||| |+.+|..+ .....++.+.+. |.++|+
T Consensus 657 --------ig-a~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~ 725 (854)
T PRK05399 657 --------IG-ASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLF 725 (854)
T ss_pred --------cC-cccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEE
Confidence 11 1122335677777777777777655 9999999999 99999444 345566666655 578888
Q ss_pred EEecChHHHHhccCE
Q 005423 277 TINQSSTEVFGLFDR 291 (697)
Q Consensus 277 tih~~~~~i~~~~D~ 291 (697)
+||. .++.+++++
T Consensus 726 aTH~--~el~~l~~~ 738 (854)
T PRK05399 726 ATHY--HELTELEEK 738 (854)
T ss_pred Eech--HHHHHHhhh
Confidence 8887 367777775
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-06 Score=87.89 Aligned_cols=155 Identities=18% Similarity=0.111 Sum_probs=80.1
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccCCCCCHHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA--GRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~--G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.+=+++|++++|.|++|+|||||+..++ ++. .+. +.+++....... ..+..++..|+....+.+.+.|.+
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~---~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~ 89 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGD---PVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDAL 89 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCC---eEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcc
Confidence 3557799999999999999999998655 433 332 456665432110 011233333321111111111110
Q ss_pred HHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC--CHHHHHHHHHHHHH-HHHcCCEEEE
Q 005423 204 YYSALLQLPGFFCQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHL--DSVSALLMMVTLKK-LASTGCTLLF 276 (697)
Q Consensus 204 ~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgL--D~~~~~~i~~~L~~-l~~~g~tvi~ 276 (697)
.. .........+++-.+ -..-++.++ .+|+++++|.++.-+ ++....+++..|++ +++.|.|+++
T Consensus 90 ~~------~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil 161 (229)
T TIGR03881 90 MK------EKEDEWSLRELSIEE--LLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILL 161 (229)
T ss_pred cc------ccccccccccCCHHH--HHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 00 000000012233222 222222322 257788888887642 34344455554554 4567999999
Q ss_pred EEecCh-------HHHHhccCEEEEEe
Q 005423 277 TINQSS-------TEVFGLFDRICLLS 296 (697)
Q Consensus 277 tih~~~-------~~i~~~~D~v~vL~ 296 (697)
+.|... ..+..+||.|+.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 162 TSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred EecccccCCCCcccceEEEEeEEEEEE
Confidence 888532 13456789999887
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=95.51 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=109.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~- 178 (697)
...+..++++..+.. ...+++.++ .+.+||.++|+||||||||||+++|+|+.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 345788899888753 357888886 899999999999999999999999999988764 88888653 221
Q ss_pred --------CCCccEEEEcCccccC--------CCCCHHHHHHHHHHcCCCccccccCCCCCH-HHHHH-HHHHHHHhhCC
Q 005423 179 --------MPYGSYGFVERETTLI--------GSLTVREYLYYSALLQLPGFFCQRKNGLPC-GERRR-VRIARELVMRP 240 (697)
Q Consensus 179 --------~~~~~~~yv~Q~~~l~--------~~lTV~e~l~~~~~l~l~~~~~~~~~~LSG-GqrqR-v~IA~aL~~~P 240 (697)
...+.+++|+|.+.-. ..+|+.|.++-. +..-. --...|+- -|-+| +++
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~---G~~Vl--l~~DslTr~A~A~rEisl-------- 275 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDR---GENVL--LIVDSVTRFAHAAREVAL-------- 275 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHc---CCCEE--EeccchHHHHHHHHHHHH--------
Confidence 1135689999976421 112333333210 10000 00011110 11111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--c--C-CEEEEEEecChHHHHh-ccCEEEEEeCCeEEEE
Q 005423 241 HVLFIDEP--LYHLDSVSALLMMVTLKKLAS--T--G-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 303 (697)
Q Consensus 241 ~iLlLDEP--TsgLD~~~~~~i~~~L~~l~~--~--g-~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~ 303 (697)
.+.|| +.|-.+..-..+-+++.+... + | .|.+-|+..+..++.+ ++|.+.-+-||+++-.
T Consensus 276 ---~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 276 ---AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred ---hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 23455 336666666677777777653 2 3 5777777776655433 6777777889998864
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=94.22 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=80.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I--~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
+++..+.|.||+||||||++++|+..++.. |.+ ++.+ +.. + .+ +. .+- +.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~----~riV~TiED-----p~E---l-----~~-~~-~i~---------q~ 306 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADM----GKIVKTMES-----PRD---L-----QV-PP-EIT---------QY 306 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhC----CCEEEEECC-----Ccc---c-----cC-CC-cce---------EE
Confidence 456779999999999999999999887643 322 2221 110 0 00 00 000 00
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec-----------
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ----------- 280 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~----------- 280 (697)
. .+-+...+ .....|..+|+++++||.-..-| ++++..++..|..++.|+|-
T Consensus 307 ----~----~~~~~~~~--~~~~lLR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~ 369 (602)
T PRK13764 307 ----S----KLEGSMEE--TADILLLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFI 369 (602)
T ss_pred ----e----eccccHHH--HHHHHHhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHH
Confidence 0 00011111 11223788999999999974322 45555566567788988882
Q ss_pred ---ChHHHHhccCEEEEEeCCeE--EEEeCch
Q 005423 281 ---SSTEVFGLFDRICLLSNGNT--LFFGETL 307 (697)
Q Consensus 281 ---~~~~i~~~~D~v~vL~~G~i--v~~G~~~ 307 (697)
+...+...+|+|+.+++|++ +|.++..
T Consensus 370 ~~v~lg~i~~iID~IV~I~~G~I~~v~~~~~~ 401 (602)
T PRK13764 370 GRVELGMIPQIVDTVIFIEDGEVSKVYDLEFT 401 (602)
T ss_pred hhhhhchHHHhhcEEEEEeCCEEEEEEeeeeE
Confidence 33466778999999999999 7877643
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=97.67 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh--ccCEEEEEeCCeEE
Q 005423 232 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG--LFDRICLLSNGNTL 301 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~--~~D~v~vL~~G~iv 301 (697)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999988999999888775 4443 23333333344443
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=108.23 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=51.7
Q ss_pred cCCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec
Q 005423 218 RKNGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 218 ~~~~LSGGqrqRv~----IA~a--------L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~ 280 (697)
..++||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++++.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35899999999996 5655 55899999999999999999999999999888 6788886654
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.3e-06 Score=102.86 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=83.8
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCC--HHHHHHHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT--VREYLYYS 206 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT--V~e~l~~~ 206 (697)
+++..+.+++++|+|++|+|||||++++.+..... ..|.+.+++......... +-.++.... ... ..+.+ ..
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~--~~~~~~~~~-~~~~~l~~~~-l~ 273 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEI--YSSANPDDY-NMKLHLQRAF-LS 273 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhh--ccccccccc-chhHHHHHHH-HH
Confidence 34566789999999999999999999998765432 358998876322111110 101110000 111 11111 11
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCEEEEEEecChH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA---STGCTLLFTINQSST 283 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~---~~g~tvi~tih~~~~ 283 (697)
..++..+ .....+ ++.|+| |..++-+|+||+- |.. ..++.|.... ..|.+||+|+|+..
T Consensus 274 ~il~~~~---~~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~GsrIIiTTrd~~- 335 (1153)
T PLN03210 274 EILDKKD---IKIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGSRIIVITKDKH- 335 (1153)
T ss_pred HHhCCCC---cccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCcEEEEEeCcHH-
Confidence 1111111 111122 555655 3355567788984 433 3344444432 35788999888653
Q ss_pred HHHhc-cCEEEEEeCCeEEEEeCchhhHHhhhhcCC
Q 005423 284 EVFGL-FDRICLLSNGNTLFFGETLACLQHFSNAGF 318 (697)
Q Consensus 284 ~i~~~-~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~ 318 (697)
.+... +|+++.+.. =+.+++.+.|...-+
T Consensus 336 vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 336 FLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 33222 677665531 134567777766533
|
syringae 6; Provisional |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.5e-06 Score=75.69 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
.+..+.|.||+|+|||||++.++....... ..+ .++....... +. .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v--------------~~~~~~~~~~------~~-~~~~~~~~~-- 71 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG---APF--------------LYLNASDLLE------GL-VVAELFGHF-- 71 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCe--------------EEEehhhhhh------hh-HHHHHhhhh--
Confidence 477899999999999999999998764211 112 2221111000 00 000000000
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEecC
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQS 281 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~tih~~ 281 (697)
++..........++.++++||.-.. +......+.+.+..+.. .+..+|++++.+
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4556666677889999999998765 56667788888888753 467777766654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-06 Score=92.39 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=81.4
Q ss_pred eeee-eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE-EEECCEeCCCC----CccEEEEcCccccCCCCCH
Q 005423 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE-VFVNGAKSEMP----YGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 126 L~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~-I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV 199 (697)
|+.+ .+=+.+|+++.|.|++|+|||||+..++......+ ++ +++.++..... ...+++..++..++.
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~---- 155 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLS---- 155 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcC----
Confidence 4443 24577999999999999999999999887654322 33 45555421100 011221111111111
Q ss_pred HHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH-hhCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-
Q 005423 200 REYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL-VMRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA- 268 (697)
Q Consensus 200 ~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL-~~~P~iLlLDEPTsgL----D-----~~~~~~i~~~L~~l~- 268 (697)
+.+-. .|..++ -.+|+++++|.-++=. + .....+++..|.+++
T Consensus 156 ---------------------e~~~~-----~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak 209 (454)
T TIGR00416 156 ---------------------ETNWE-----QICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAK 209 (454)
T ss_pred ---------------------CCCHH-----HHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHH
Confidence 01111 111111 2479999999876521 1 223445666677775
Q ss_pred HcCCEEEEEEecChH-------HHHhccCEEEEEeCCe
Q 005423 269 STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 299 (697)
Q Consensus 269 ~~g~tvi~tih~~~~-------~i~~~~D~v~vL~~G~ 299 (697)
+.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 210 ~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 210 TRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 569999998775432 2567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-06 Score=84.14 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH--HHHHcCCCccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY--YSALLQLPGFF 215 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~--~~~~l~l~~~~ 215 (697)
+++|.|..||||||+.+.|.-.. |-..++-... .+ ..+-+...+.+.+. |+... .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-------~~~~i~~D~~---~~--------~~~~~~~~~~~~i~~~fg~~i-----~ 57 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-------HFPVIDADKI---AH--------QVVEKGSPAYEKIVDHFGAQI-----L 57 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-------CCeEEeCCHH---HH--------HHHhcCChHHHHHHHHHCHHH-----h
Confidence 37999999999999999998652 1111221100 00 00111223444331 22111 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH-HHHhccCEEEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICL 294 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~-~i~~~~D~v~v 294 (697)
+ -.|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..+.|.+|++.+|.... .....||.+++
T Consensus 58 ~------~~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~ 129 (188)
T TIGR00152 58 N------EDGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIV 129 (188)
T ss_pred C------CCCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEE
Confidence 0 1388999999999999999988887 7899999999999999887667788887776531 35678999988
Q ss_pred EeC
Q 005423 295 LSN 297 (697)
Q Consensus 295 L~~ 297 (697)
++.
T Consensus 130 V~~ 132 (188)
T TIGR00152 130 VDV 132 (188)
T ss_pred EEC
Confidence 764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-06 Score=83.66 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=44.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CccEEEEcCccccCCCCCHHHHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998754 45666553221 11245556655444555666666554
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.3e-05 Score=82.32 Aligned_cols=153 Identities=13% Similarity=0.028 Sum_probs=76.6
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCcc----EEEEcCccccCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGS----YGFVERETTLIGS 196 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~----~~yv~Q~~~l~~~ 196 (697)
+.|+++.+-+.+|+++.|.|++|+|||||+..++-...... ...|.+-..... ...+. .+.-.+...-...
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~ 95 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFI 95 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHHHHHHhCCCcccCCcccc
Confidence 45777777788999999999999999999988765432110 023333221100 00000 0110000000001
Q ss_pred CCHHHHHHHHHH-cCCCcc-ccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH--------HHHHHHHHHH
Q 005423 197 LTVREYLYYSAL-LQLPGF-FCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS--------VSALLMMVTL 264 (697)
Q Consensus 197 lTV~e~l~~~~~-l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~--------~~~~~i~~~L 264 (697)
.+..+.-..... .+.+.. ........+ ..+-+..++.++ .+|+++++|..+.-.+. ....+++..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L 173 (271)
T cd01122 96 YTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKL 173 (271)
T ss_pred ccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHH
Confidence 121111111111 111111 011111112 234455555555 37999999998774432 1245677778
Q ss_pred HHHH-HcCCEEEEEEec
Q 005423 265 KKLA-STGCTLLFTINQ 280 (697)
Q Consensus 265 ~~l~-~~g~tvi~tih~ 280 (697)
++++ +.+.||++++|-
T Consensus 174 ~~la~~~~vtvll~sq~ 190 (271)
T cd01122 174 RGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHhCCEEEEEecc
Confidence 8887 468999987654
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=78.06 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec---------ChHHHHhccCEEEEEe
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 296 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~---------~~~~i~~~~D~v~vL~ 296 (697)
.+++++++||- --|| ..+|.++++.++..|.+||++-+. +...+..++|.|..|+
T Consensus 77 ~~~dvviIDEa-q~l~---~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 77 EKIDCVLIDEA-QFLD---KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCEEEEEcc-ccCC---HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 47899999999 2243 344778888888899999999888 6678899999999886
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=86.75 Aligned_cols=123 Identities=23% Similarity=0.255 Sum_probs=70.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ccEEEEcCccccCCCCCHHHHHHHHHHc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYYSALL 209 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~e~l~~~~~l 209 (697)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+++... ...+.+.|...--...+ |
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~------~---- 201 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNN------F---- 201 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccC------H----
Confidence 489999999999999999999999987422101135544333332111 11244444321000001 1
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 210 QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 210 ~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
.-+|-.+|=.+|+++++.|- =|..+....+ +.+..|.-|+.|+|-.+ +.+..
T Consensus 202 -------------------~~~l~~aLR~~Pd~i~vGEi---Rd~et~~~al----~aa~tGh~v~tTlHa~~--~~~~i 253 (358)
T TIGR02524 202 -------------------AAGVRNALRRKPHAILVGEA---RDAETISAAL----EAALTGHPVYTTLHSSG--VAETI 253 (358)
T ss_pred -------------------HHHHHHHhccCCCEEeeeee---CCHHHHHHHH----HHHHcCCcEEEeeccCC--HHHHH
Confidence 11122366679999999994 3555554433 23457888998888754 34445
Q ss_pred CEEEE
Q 005423 290 DRICL 294 (697)
Q Consensus 290 D~v~v 294 (697)
+|++-
T Consensus 254 ~Rl~~ 258 (358)
T TIGR02524 254 RRLVG 258 (358)
T ss_pred HHHHH
Confidence 55443
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00074 Score=70.06 Aligned_cols=220 Identities=12% Similarity=0.140 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005423 410 AVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSG---L-GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 485 (697)
Q Consensus 410 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~---l-~~~~~~i~~r~g~lff~~~~~~~~~~~~v~~~~~er~ 485 (697)
+.+.+|.++.+.|.|..+..-.+..++.|+.. ..|.. . ..+..+.+. .| ... .+..+..+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~----~f-~~~--~~~~~~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP----FF-SLA--PWVFLFLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH----HH-HHH--HHHHHHHHHHH--HHH
Confidence 46789999999999998887777777766442 22211 0 111122221 11 110 11111122322 225
Q ss_pred HhHhhccCCCc--------chHHHHHHHHHHHHhHHHHHHH---hHhhhhhccccc---cccHHHHHHHHHHHHHHHHHH
Q 005423 486 TYASEESNMHS--------GALVFLLGQLLSSIPFLFLISI---SSSLVFYFLVGL---RDEFSLLMYFVLNFFMCLLVN 551 (697)
Q Consensus 486 vf~rE~~~g~Y--------~~~ay~la~~l~elP~~~~~~~---if~~i~Y~m~Gl---~~~~~~f~~f~l~~~l~~~~~ 551 (697)
.+-+||++|.. +...++++|.++-+-..++..+ ++....++ .|. ..+...++...+.+++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 56777777775 3567899999987655443322 22222222 122 224455544444455556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCcc
Q 005423 552 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRT 631 (697)
Q Consensus 552 ~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~ 631 (697)
.++|.++++++.+...|..++..+...+ +.|+-. ..+++.+.|..|+.|+||..|-.+..
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l--~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~----------------- 210 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLF--YFGFDG-LASLLWGGSAYTISELGLSYHYESIS----------------- 210 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHH--HHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----------------
Confidence 8999999999999888876554432222 222211 12232123566799999976643211
Q ss_pred ccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 005423 632 ISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 675 (697)
Q Consensus 632 ~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~ 675 (697)
+ |. -.|.++...+.+.+++..++...++.
T Consensus 211 -------~---g~-----i~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 211 -------R---GV-----IDSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -------c---Cc-----ccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11 01456667777777777777665543
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=70.50 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=38.7
Q ss_pred cccCCCCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 216 CQRKNGLPCGERR-RVRIAREL------VM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 216 ~~~~~~LSGGqrq-Rv~IA~aL------~~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
.+...++|||||| .+.+|.++ -. .|++++||||+++||......++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3456899999994 44443332 22 3799999999999999999999999875
|
|
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=84.82 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 220 NGLPCGERRRVRIARELVM--RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+.||-|+-|-+++|.+|+. .|.+|++|||-++|-|..-..+...++..++.+ -|++++|.+.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r 332 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR 332 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence 5899999999999999987 589999999999999999999999999988776 5666678664
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=89.23 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 235 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.+..+|.++++|||...|| +..+..+.+.++.+++.|.++++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3556899999999999999 88999999999999988889888888764
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.4e-06 Score=66.09 Aligned_cols=35 Identities=46% Similarity=0.485 Sum_probs=27.4
Q ss_pred eeeeEEcC-CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 128 SSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 128 ~vs~~v~~-Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+.++.+.+ |+++.|.|+||||||||+++|.=.+-+
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555554 679999999999999999999765543
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.1e-05 Score=75.10 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=38.2
Q ss_pred ccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 217 QRKNGLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~--IA~aL~~-~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
.+...+++||+|++. +++.+-. +++++ |||++|.....++.+.|.++.++
T Consensus 143 nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 143 TKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 445678999999987 5555543 33443 99999999999999999988754
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=90.56 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=51.7
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
++|++..+ +.+.+++++++.+..|+.++|+||||+|||||++.|.|++++.. |++.+++..+
T Consensus 187 ~~d~~~v~-----Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~---g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVI-----GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLS---NEEALESAAI 248 (506)
T ss_pred ccCeEEEE-----CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCC---CcEEEecchh
Confidence 34666544 23468899999999999999999999999999999999999865 8888877653
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=75.37 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh--------HHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTs------gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~--------~~i~~~~D~v~vL~ 296 (697)
+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68899999 544 44566677888999999989999999888531 23567899999994
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=79.63 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=76.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-EECCEeCCCC----CccEEEEcCccccCCCCCHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
+=+.+|+++.|.|++|+|||||+..++....... +.+ ++.++..... .+.+++..++..+...
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e--------- 144 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGISTENLYLLAE--------- 144 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEcc---------
Confidence 3467999999999999999999999987654332 444 3444321000 0111111111111110
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHH-HcCCEEE
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY----HLD-----SVSALLMMVTLKKLA-STGCTLL 275 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----gLD-----~~~~~~i~~~L~~l~-~~g~tvi 275 (697)
..-.+- . ...--.+|+++++|+-.+ .+| .....+++..|.+++ +.+.|++
T Consensus 145 ----------------~~le~I--~--~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvi 204 (372)
T cd01121 145 ----------------TNLEDI--L--ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIF 204 (372)
T ss_pred ----------------CcHHHH--H--HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 111110 0 111124899999999643 333 122345566666766 5688888
Q ss_pred EEEecCh-------HHHHhccCEEEEEeCC
Q 005423 276 FTINQSS-------TEVFGLFDRICLLSNG 298 (697)
Q Consensus 276 ~tih~~~-------~~i~~~~D~v~vL~~G 298 (697)
++.|-.. ..+.+++|.|+.++.+
T Consensus 205 lvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 205 IVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred EEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 8655322 1367789999998744
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.1e-05 Score=78.97 Aligned_cols=140 Identities=22% Similarity=0.253 Sum_probs=81.3
Q ss_pred EEEEeEEEEEeccc-ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 106 VVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~-~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
-.+++..+++..+. +.....|.++++ +++|+.+.|+||+|+|||+|+.+|+......+ .+|.
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~------------- 134 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVR------------- 134 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEE-------------
Confidence 34555555543211 111235777787 99999999999999999999999976532211 1222
Q ss_pred EEEcCccccCCCCCHHHHHH-HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 005423 185 GFVERETTLIGSLTVREYLY-YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMV 262 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~ 262 (697)
|+ +..+.+. +... ....+ -.+ +-...+..|+++++||--. .+|...+..+.+
T Consensus 135 -~~----------~~~~l~~~l~~a--------~~~~~-----~~~--~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~ 188 (259)
T PRK09183 135 -FT----------TAADLLLQLSTA--------QRQGR-----YKT--TLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ 188 (259)
T ss_pred -EE----------eHHHHHHHHHHH--------HHCCc-----HHH--HHHHHhcCCCEEEEcccccCCCChHHHHHHHH
Confidence 21 1112110 0000 00000 111 1112257899999999953 477777778888
Q ss_pred HHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 263 TLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 263 ~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
++....+.+ ++|+|++.+..+..+.+
T Consensus 189 li~~r~~~~-s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 189 VIAKRYEKG-SMILTSNLPFGQWDQTF 214 (259)
T ss_pred HHHHHHhcC-cEEEecCCCHHHHHHHh
Confidence 887766555 46666777766654443
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.9e-05 Score=90.87 Aligned_cols=108 Identities=24% Similarity=0.231 Sum_probs=65.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-----
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY----- 204 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~----- 204 (697)
..+.++|+||||+|||||++++.+..++.. ...+-|.+||.......+.+ +. .++.. +.+...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i----~~-~llg~--~~~~~~~~a~~ 246 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV----TN-PLLGS--VHDPIYQGARR 246 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH----hH-HhcCC--ccHHHHHHHHH
Confidence 356799999999999999999998764321 01245777775432111100 00 11111 111111
Q ss_pred HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 205 YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 205 ~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
..+..+++.........+||| +||||| +..||...+..+++.|++
T Consensus 247 ~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 247 DLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 011223333334445677777 999999 899999999998888865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 697 | ||||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-13 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-11 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-11 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-09 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-08 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-07 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-07 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-06 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-04 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-04 |
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 9e-20
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++ +T+ GK Y +++ N + G +I+GP SGK+TLLRAI+G LP+S G
Sbjct: 5 KNVGITLSGKG-YERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS----G 58
Query: 169 EVFVNGAK-SEMP---------YGSYGF---VERETTLIGSLT------VREYLYYSALL 209
+F+NG + ++ +Y V L L E L L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEML---KAL 115
Query: 210 QLPGFFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
+L +RK L G+ VR + L +P ++ +DEP ++D+ ++ +K+
Sbjct: 116 KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175
Query: 269 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302
+L T + + GN L
Sbjct: 176 KE--GILVTHELD--MLNLYKEYKAYFLVGNRLQ 205
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-17
Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 47/198 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------G 185
G + ++GP +GKSTLL +AG G + G P ++
Sbjct: 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQ----PLEAWSATKLALHRA 76
Query: 186 FVERETTLIGSLTVREYLYYS--------------ALLQLPGFFCQRKNGLPCGERRRVR 231
++ ++ T + V YL L L + N L GE +RVR
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR 136
Query: 232 IARELV-------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT---INQS 281
+A ++ +L +DEP+ LD + L L+ G ++ + +N +
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196
Query: 282 STEVFGLF-DRICLLSNG 298
R LL G
Sbjct: 197 L-----RHAHRAWLLKGG 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 54/214 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TL 193
G ++ G +GK+TLL + P ++ G V + G G G+
Sbjct: 46 KGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLFG----KMPGKVGYSAETVRQH 98
Query: 194 IG------------SLTVRE------------YLYYS--------ALLQLPGF--FCQRK 219
IG V + Y LL+L G Q+
Sbjct: 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY 158
Query: 220 NG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG--CTLLF 276
G L GE++RV IAR L+ +P VL +DEP LD ++ ++ L L+ + +++
Sbjct: 159 IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIY 218
Query: 277 TINQSST----EVFGLFDRICLLSNGNTLFFGET 306
T E+ F +I LL +G ++ G
Sbjct: 219 V-----THFIEEITANFSKILLLKDGQSIQQGAV 247
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 6e-16
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 41/213 (19%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+ Y V++ G + GP GK+TLL+ I+ L G
Sbjct: 14 RDLS------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---G 64
Query: 169 EVFVNG-----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSA--------------LL 209
E+ NG K ++ F+ E + ++V +YL A L
Sbjct: 65 EIIYNGVPITKVKGKI-----FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL 119
Query: 210 QLPGFFCQRK--NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
+ +K L G RRV++A L++ + +D+P+ +D S ++ ++ ++
Sbjct: 120 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179
Query: 268 AS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
G ++ + E D L +
Sbjct: 180 LKEKGIVIISS-----REELSYCDVNENLHKYS 207
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 45/188 (23%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYGFVERETTL 193
GP +GK+T LR I+ + S+ G V V G + + ++ E
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLI-----SYLPEEAGA 99
Query: 194 IGSLTVREYL-YYSALLQLPGFFCQRK------------------NGLPCGERRRVRIAR 234
++ EYL + + + + G R++ IAR
Sbjct: 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159
Query: 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST----EVFGLFD 290
L++ P + +DEP LD ++A + LK+ + G T+L + + EV L D
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS-----SHNMLEVEFLCD 214
Query: 291 RICLLSNG 298
RI L+ NG
Sbjct: 215 RIALIHNG 222
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 19/172 (11%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK- 176
++ D + NG A G + I+GP GK+T R + G + G V
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQIL 332
Query: 177 -------SEMPYGSYGF----VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCG 225
G+ ++ S E L L N L G
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT---KRLNLHRLLESNVNDLSGG 389
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 276
E +++ IA L + +D+P +LD ++ +K++
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 47/216 (21%)
Query: 120 RYSDKVVKSSNGYALP----GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG 174
RY K + LP T+ ++G GK+T+L+ +AG + P+ +V +
Sbjct: 8 RYKVNGFK---LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 175 AKSEM------------------PYGSYGFVERETTLIGSLTVREYL----------YYS 206
+VE + + TV E L
Sbjct: 65 VLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKG-TVNEILTKIDERGKKDEVK 123
Query: 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
LL + + + N L G +R+ +A L+ V D+P +LD + M +++
Sbjct: 124 ELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183
Query: 267 LASTGCTLLFTINQSST----EVFGLFDRICLLSNG 298
L ++ + L D I ++
Sbjct: 184 LL-KNKYVIV-----VDHDLIVLDYLTDLIHIIYGE 213
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 61/231 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
+ +++ L + G + ++G GKSTLL + G
Sbjct: 16 AENFLFQQLNFDLN------------------KGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY-LY----YSALLQLPG---- 213
G++ V Y S GFV + + + +V + L + P
Sbjct: 58 IQ---GKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 214 -------------FFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259
+R+ L G+R+ + IAR + ++ +DEP LD + +
Sbjct: 107 QVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 260 MMVTLKKLAST-GCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFGET 306
++ L LA + T++FT NQ V + ++ LL N FGET
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPNQ----VVAIANKTLLL-NKQNFKFGET 212
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGT 137
L N P + + ++V + + Y ++ G G
Sbjct: 329 LKDENVRFRPYEIRFTKLSERVDVERETLVEYP-----RLVKDYGSFKLEVEPGEIRKGE 383
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGS 196
+ I+GP GK+T ++ +AG + G+V + + + Y + L+
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWDLTVAYKPQYIKAEYEGTVYELLSK 440
Query: 197 LTVREYL---YYSAL---LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
+ + Y + L L + + + L GE +RV IA L+ + +DEP
Sbjct: 441 IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500
Query: 251 HLDSVSALLMMVTLKKLA-STGCTLLF 276
+LD L + ++ L T L
Sbjct: 501 YLDVEQRLAVSRAIRHLMEKNEKTALV 527
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 27/184 (14%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHS---ARMYGEVFVNGA 175
RY + G + I+GP +GK+T ++ +AG+L + + +
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159
Query: 176 K-SEMPY-------GSYGFVERE--TTLIGSLT---VREYL----------YYSALLQLP 212
+ +E+ G V + L+ VRE L L+L
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
+ + L GE +RV IA L+ + H F DEP +LD L + +++LA+ G
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 279
Query: 273 TLLF 276
+L
Sbjct: 280 AVLV 283
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 8e-14
Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 28/218 (12%)
Query: 76 PSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYAL 134
+ + +L +A + K+ D V+ G
Sbjct: 317 FLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFS 376
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
+ V+MG +GK+TL++ +AG L G+ S P ++
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDE---GQDIPKLNVSMKP--------QKIAPK 425
Query: 195 GSLTVREYLYYS---------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMR 239
TVR+ + L++ Q L GE +RV I L +
Sbjct: 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIP 485
Query: 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 276
+ IDEP +LDS ++ +++ T
Sbjct: 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST- 283
GE +R I V V DEP +LD L ++ L + ++
Sbjct: 225 GELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC-----VEH 279
Query: 284 ---EVFGLFDRICLLSNG 298
+ L D +C++
Sbjct: 280 DLSVLDYLSDFVCIIYGV 297
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 35/185 (18%)
Query: 140 VIMGPAKSGKSTLLRAIAG-----------------RLPHSARMYGEVFVNGA------- 175
V++GP +GKS L IAG LP R G V + A
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 176 KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARE 235
+ YG E VRE L + ++ L GER+RV +AR
Sbjct: 88 YRNIAYGLRNVERVER----DRRVREMA---EKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRIC 293
LV++P +L +DEPL +D + ++M L+ + +L T + E L D +
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI--EAAMLADEVA 198
Query: 294 LLSNG 298
++ NG
Sbjct: 199 VMLNG 203
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-13
Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 22/210 (10%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGKRRYSDKVVKSSNGYALPG 136
L N P +I ++V + L + Y ++ G G
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLV------KDYGSFRLEVEPGEIKKG 312
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERET--TL 193
+ I+GP GK+T ++ +AG + G++ + + + Y T L
Sbjct: 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWDLTVAYKPQYIK--ADYEGTVYEL 367
Query: 194 IGSLTVREYLYYS------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247
+ + + L + + + N L GE +RV IA L+ + +DE
Sbjct: 368 LSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 248 PLYHLDSVSALLMMVTLKKLA-STGCTLLF 276
P +LD L + ++ L T L
Sbjct: 428 PSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 38/208 (18%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGA 175
RY + G + I+GP +GKST ++ +AG+L + +
Sbjct: 30 RYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAF 89
Query: 176 K-SEMPYGSYGFVERE---------TTLIGSLT---VREYL----------YYSALLQLP 212
+ +E+ E LI V E L L+L
Sbjct: 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE 149
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
+ L GE +RV IA L+ F DEP +LD L +++L+ G
Sbjct: 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 273 TLLFTINQSSTE-----VFGLFDRICLL 295
++L E + L D I ++
Sbjct: 210 SVLV------VEHDLAVLDYLSDIIHVV 231
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 4e-11
Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 37/173 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK---------SEMPYGS 183
G I+G + SGKSTLL I G L P G+VF+ G + S +
Sbjct: 29 KGEFVSIIGASGSGKSTLLY-ILGLLDAPTE----GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 184 YGFVERETTLIGSLTVREY----LYYS------------ALLQLPGFFCQRKNGLPC--- 224
GFV + LI LT E + LL G + + P
Sbjct: 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-GDKLSRKPYELS 142
Query: 225 -GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
GE++RV IAR L P +LF DEP +LDS + +M K+ G +++
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 53/221 (23%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ I+ R++ + + + + G VI+GP +GK+ L IAG + G +
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRIL 58
Query: 172 VNGAK-SEMP---------YGSY------------GF------VERETTLIGSLTVREYL 203
++G +++ Y +Y F ++ V +
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR------VLDTA 112
Query: 204 YYSALLQLPGFFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL--- 259
L++ R L GE++RV +AR LV P +L +DEPL LD
Sbjct: 113 ---RDLKIEHL-LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD---PRTQEN 165
Query: 260 MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 298
L L T+L T +Q+ E + DRI ++ +G
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQT--EARIMADRIAVVMDG 204
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284
GE+RRV IA +V P +L +DEPL LD ++ ++K + G T++ I+
Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-ISHDIET 200
Query: 285 VFGLFDRICLLSNGNTLFFGETLACLQH 312
V DR+ +L G +F G + L+
Sbjct: 201 VINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 40/177 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK-SEMPY--------GS 183
G IMGP+ SGKST+L I G L P GEV+++ K +++
Sbjct: 30 EGEFVSIMGPSGSGKSTMLN-IIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 184 YGFVERETTLIGSLTVREY----LYYS---------------ALLQLPGFFCQRKNGLPC 224
GFV ++ LI LT E L + L++ + N P
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 225 ----GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLF 276
G+++RV IAR L P ++ D+P + LDS + +M LKKL G T++
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 59/205 (28%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS-------YGFV 187
PG + I+G + GK+TLLR +AG + GE+ ++G + G++
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSGKTIFSKNTNLPVRERRLGYL 85
Query: 188 ----------------------------ERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ + L L + R
Sbjct: 86 VQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAML---ELTGISEL-AGRY 135
Query: 220 -NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTGCTL 274
+ L G+++R +AR L P ++ +DEP LD L + + + G +
Sbjct: 136 PHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALRANGKSA 192
Query: 275 LF-TINQSSTEVFGLFDRICLLSNG 298
+F + ++ E DRI ++ G
Sbjct: 193 VFVSHDRE--EALQYADRIAVMKQG 215
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 17/176 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + ++ + I GP GKSTL+RAIA
Sbjct: 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQE 493
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL---LQLPGF----FCQRKNG 221
E + ++ +T+++ + A+ L GF +
Sbjct: 494 ECRTVYVEHDID-----GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA 548
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLF 276
L G + ++ +AR ++ +L +DEP HLD + + L L + G T +
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD----TVNVAWLVNYLNTCGITSIT 600
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 6e-05
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 258
G++ ++ +A RPH++ +DEP +LD S+ AL
Sbjct: 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL 940
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 5e-09
Identities = 75/509 (14%), Positives = 152/509 (29%), Gaps = 120/509 (23%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNG-YAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
++ D V K +K L P +I G SGK+ + +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGL 222
+M ++F + + T++ L + L Y Q+ + R +
Sbjct: 177 QCKMDFKIF---------WLNLKNCNSPETVLEML---QKLLY----QIDPNWTSRSDH- 219
Query: 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM--VTLKKLAST---GC-TLLF 276
+ R+ + + R L +P + LL++ V K + C LL
Sbjct: 220 SSNIKLRIHSIQAELRR---LLKSKPYEN-----CLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 277 TINQSSTEVFGLFDR--ICLLSNGNTLFFGETLACLQHFSNAGF---P---CPIMQSP-- 326
T + T+ I L + TL E + L + + P +P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRR 329
Query: 327 --------SDH-----FLRAINTD-FDRIIAMC------KSWQDDHGDFSSVNMDTAVAI 366
D + +N D II ++ S +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 367 RTLEATYQSSADAAAVETMI-----LRLTEKEGP---------FLKSKGKASSATRVAVL 412
L + + V ++ L EK+ +L+ K K + +
Sbjct: 390 ILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-- 446
Query: 413 TWRSLLIMSREWKYYWLRLILCM--ILTLCV-GTVFSGLGHSLSSV-VTRVAAIF--VFV 466
RS++ +Y + ++ + +S +GH L ++ +F VF+
Sbjct: 447 --RSIV------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 467 SFN-----------SLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFL 515
F + + ++++K Y + + L+ +L FL
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILD-----FL 552
Query: 516 ISISSSLVFYFLVGLRDEFSLLMYFVLNF 544
I +L+ +++ L+ L
Sbjct: 553 PKIEENLI-------CSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 72/468 (15%), Positives = 140/468 (29%), Gaps = 143/468 (30%)
Query: 329 HFLRAINTDFDRIIAMCKSWQDD-HGDFSSVNMDTAVAIRT-LEATY---------QSSA 377
F A +FD CK QD S +D + + + T Q
Sbjct: 24 VFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 378 DAAAVETMILRLTEKEGPFLKSK----GKASSATRVAVLTWRSLLI----------MSRE 423
VE ++ FL S + S + R L +SR
Sbjct: 79 VQKFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 424 WKYYWLRLILCMI-----LTLCVGTVFSGLGHS-LSSVVTRVAAIFVFVSFNSL-LNIAG 476
Y LR L + + + G G G + ++ V + + F LN+
Sbjct: 135 QPYLKLRQALLELRPAKNVLID-G--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK- 190
Query: 477 VPALMKEIKTYASEESNMHSGALVFLLGQLLSSI--PFLFLISISSSLVFYFLVGLRDEF 534
S E+ ++ +L +LL I + SS++ + ++ E
Sbjct: 191 ---------NCNSPET------VLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAEL 234
Query: 535 SLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWS--ILTLISVHVVMMLSAGYFRIRNAL 592
L+ + CLLV L +V + ++ ++L+ + ++ + L
Sbjct: 235 RRLL-KSKPYENCLLV---L--------LNV-QNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 593 PGPVWTYPIS---YVAFHTYSIKGLLENEYLGTSF---PVGQVRTIS------------- 633
T+ + +K LL YL P +V T +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPR-EVLTTNPRRLSIIAESIRD 339
Query: 634 -----------GYQALQSAYDISSKS------------------NSK---------WGNL 655
L + + S ++ W ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 656 LVLFLMAIGYRLLLFVLLYLRVKKNTF-IHKLF-----KCDHDTNNHR 697
+ +M + +L + L+ + K++T I ++ K +++ HR
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 110 DLTVTIKG-KRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM 166
+T+ G ++ Y V+ + G M ++GP+ SGK+T+LR IAG +
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK-- 69
Query: 167 YGEVFVNGAK-SEMPYGSY----GFV----------------------------ERETTL 193
G+V++ G + +++P G V E +
Sbjct: 70 -GDVWIGGKRVTDLP--PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR- 125
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253
VRE L ++L + + + L G+++RV +AR L RP VL DEP +D
Sbjct: 126 -----VRELL---RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 254 SVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 299
+ + ++++ G T +F T +Q E + DR+ +L GN
Sbjct: 178 ---TQIRRELRTFVRQVHDEMGVTSVFVTHDQE--EALEVADRVLVLHEGN 223
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSST 283
G+++RV IA LVM P VL +DEP LD + +M L ++ G T++ +T
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITII-----IAT 201
Query: 284 ----EVFGLFDRICLLSNGNTLFFGET 306
V D + ++ G + G
Sbjct: 202 HDIDIVPLYCDNVFVMKEGRVILQGNP 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 56/229 (24%)
Query: 112 TVTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSAR 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG L P +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 166 MY-GEVFVNGAKSE----------MPYGSYGFVERETTLIGSLTVREYLYYS-------- 206
+Y + V M + ++ L +LT E + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWA-------LYPNLTAFENIAFPLTNMKMSK 114
Query: 207 -----------ALLQLPGFFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
+L + L +++RV +AR LV P +L +DEP +LD
Sbjct: 115 EEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD- 172
Query: 255 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 298
A + +K++ + G TLL + + ++F + DR+ +L G
Sbjct: 173 --ARMRDSARALVKEVQSRLGVTLLVVSHDP--ADIFAIADRVGVLVKG 217
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 60/294 (20%), Positives = 102/294 (34%), Gaps = 82/294 (27%)
Query: 51 WEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKD 110
WE+ E+ + ++ N T+ SLS N L +P L KD
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL-----------------KD 56
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ G + + G +GK++LL I G L S G++
Sbjct: 57 INFKIE------------------RGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKI 95
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVRE---------YLYYSA---------LLQLP 212
+G S S+ I T++E Y Y S + +
Sbjct: 96 KHSGRISFCSQNSW---------IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFA 146
Query: 213 -------GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTL 264
G + L G+R R+ +AR + + +D P +LD + +
Sbjct: 147 EKDNIVLG---EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 265 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG---ETLACLQHFSN 315
KL + +L T ++ E D+I +L G++ F+G E FS+
Sbjct: 204 CKLMANKTRILVT-SK--MEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSS 254
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
K G ++ + D V ++ + + +KS N + GT ++G SGKST+ +
Sbjct: 8 TSHEKKFGVNIEFSD--VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 156 IAGRLPHSARMY---GEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYY-- 205
+ R Y G++ + G ++ S G V ++T L T++ + Y
Sbjct: 66 LY-------RFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYGK 117
Query: 206 -SA-----------------LLQLP-GFFCQ---RKNGLPCGERRRVRIARELVMRPHVL 243
A + LP + + L GER+R+ IAR L+ P ++
Sbjct: 118 LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIV 177
Query: 244 FIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQSSTEVFGLFDRICLLSNG 298
DE LDS + L ++ L + L TI+ + + I LL+ G
Sbjct: 178 IFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSA--------ESIILLNKG 229
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++GP+ +GKST+LR + R Y G + ++G S++ S G
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQVTQASLRSHIG 131
Query: 186 FVERETTLIGSLTVREYLYYSAL--------------------LQLP-GFFCQ---RKNG 221
V ++T L T+ + + Y + + P G+ Q R
Sbjct: 132 VVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LF 276
L GE++RV IAR ++ P ++ +DE LD+ + + +L K+ + T+ L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 277 TINQSSTEVFGLFDRICLLSNG 298
T+ + D+I ++ +G
Sbjct: 251 TVVNA--------DQILVIKDG 264
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 47/269 (17%), Positives = 88/269 (32%), Gaps = 93/269 (34%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + + ++++ +I +V ++G SGKSTLL A RL +
Sbjct: 32 GGNAILENISFSISPG----QRVG--------------LLGRTGSGKSTLLSAFL-RLLN 72
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIG------------------SLTVREYL- 203
+ GE+ ++G I S T R+ L
Sbjct: 73 TE---GEIQIDG--------------VSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD 115
Query: 204 ---YYS------AL--LQLPGFFCQRKNGLPC-----------GERRRVRIARELVMRPH 241
+S + L Q L G ++ + +AR ++ +
Sbjct: 116 PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175
Query: 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301
+L +DEP HLD V+ ++ TLK+ A CT++ + + D+ ++
Sbjct: 176 ILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIEAML--ECDQFLVIEENKVR 232
Query: 302 FFGETLACLQHFSNAGFPCPIMQSPSDHF 330
+ + P+D F
Sbjct: 233 QYDS-------------ILELYHYPADRF 248
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 85/527 (16%), Positives = 157/527 (29%), Gaps = 140/527 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST ++ + R+Y G V ++G + G
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQ-------RLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 186 FVERETTL----------IGSLTVREYLYYSAL---------LQLP-------GFFCQRK 219
V +E L G V A+ ++LP G +R
Sbjct: 468 VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG---ERG 524
Query: 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--- 276
L G+++R+ IAR LV P +L +DE LD+ S ++ L K A G T +
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 277 ---TINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 333
T+ + D I G I++ + L
Sbjct: 584 RLSTVRNA--------DVIAGFDGGV----------------------IVEQGNHDELMR 613
Query: 334 INTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE 393
+ +++ + + + + + + S+ T +
Sbjct: 614 EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD 673
Query: 394 GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLS 453
S +A WR L + S EW Y+ + + +I G + S
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAII----NGGLQPAFSVIFS 729
Query: 454 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFL 513
VV N + + +L+FL+ ++S I F
Sbjct: 730 KVV------------GVFTNGGPPETQRQNSNLF----------SLLFLILGIISFITFF 767
Query: 514 FLISISSSLVFYFLVGLRDE-FSLLMYFVLNFF--------------------------- 545
LR F ++ +++F
Sbjct: 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827
Query: 546 -MCLLVNEGLMLVVASIWKDVY-WSILTLISVHVV-MMLSAGYFRIR 589
+ ++ L I +Y W LTL+ + +V ++ AG ++
Sbjct: 828 RLAVIFQNIANLGTGIIISLIYGWQ-LTLLLLAIVPIIAIAGVVEMK 873
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 45/197 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + + G +GK++LL I G L G++ +G S + S + + I
Sbjct: 33 RGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRIS---FCS------QFSWI 80
Query: 195 GSLTVRE----------YLYYSA---------LLQLP-------GFFCQRKNGLPCGERR 228
T++E Y Y S + + G + L G+R
Sbjct: 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG---EGGITLSGGQRA 137
Query: 229 RVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
R+ +AR + + +D P +LD + + KL + +L T ++ E
Sbjct: 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-SK--MEHLK 194
Query: 288 LFDRICLLSNGNTLFFG 304
D+I +L G++ F+G
Sbjct: 195 KADKILILHEGSSYFYG 211
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 62/206 (30%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G + I+G + SGKSTL + I R Y G+V ++G + G
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVG 86
Query: 186 FVERETTLIGSLTVREYLYYSAL--------------------LQLP-------GFFCQR 218
V ++ L+ ++ + + + +L G ++
Sbjct: 87 VVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVG---EQ 142
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF-- 276
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIA 201
Query: 277 ----TINQSSTEVFGLFDRICLLSNG 298
T+ + DRI ++ G
Sbjct: 202 HRLSTVKNA--------DRIIVMEKG 219
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 44/147 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTL 193
G + ++G +GK+T L AIAG + G++ NG + P ++ L
Sbjct: 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKP--AHVINRMGIAL 85
Query: 194 I-------GSLTVREYLYYSALLQLPGFFCQRKNGLPC------------GERRRVR--- 231
+ LTV E L + + + K G+ ER +
Sbjct: 86 VPEGRRIFPELTVYEN------LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT 139
Query: 232 ----------IARELVMRPHVLFIDEP 248
I R L+ RP +L +DEP
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
+DL +I G+ ++K N G + +MGP +GKSTL + +AG
Sbjct: 7 RDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 24 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 697 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.84 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.82 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.81 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.8 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.79 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.79 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.77 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.77 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.75 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.74 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.73 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.73 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.73 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.7 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.7 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.69 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.69 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.68 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.67 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.66 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.65 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.65 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.64 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.62 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.62 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.55 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.54 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.54 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.53 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.51 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.49 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.48 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.43 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.37 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.36 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.36 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.35 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.35 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.33 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.33 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.3 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.29 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.29 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.25 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.24 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.23 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.22 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.2 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.18 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.16 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.11 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.09 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.07 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.05 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.05 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.03 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.95 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.95 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.94 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.93 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.93 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.9 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.89 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.89 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.81 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.77 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.76 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.67 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.65 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.58 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.57 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.55 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.52 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.48 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.46 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.44 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.42 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.41 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.36 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.32 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.27 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.25 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.24 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.18 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.17 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.16 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.08 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.06 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.05 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.02 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.01 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.98 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.98 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.98 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.96 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.96 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.94 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.91 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.89 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.89 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.88 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.82 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.81 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.78 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.77 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.76 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.74 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.71 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.7 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.69 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.65 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.65 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.64 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.62 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.58 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.58 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.58 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.56 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.55 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.53 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.53 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.52 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.52 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.52 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.43 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.41 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.32 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.32 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.3 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.28 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.26 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.21 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.19 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.19 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.17 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.17 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.16 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.11 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.08 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.06 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.05 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.03 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.0 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.0 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.99 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.98 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.95 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.91 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.87 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.86 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.83 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.83 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.82 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.81 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.79 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.79 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.73 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.72 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.71 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.67 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.65 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.62 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.62 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.59 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.56 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.54 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.53 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.52 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.48 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.47 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.46 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.46 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.44 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.44 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.42 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.4 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.36 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.34 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.33 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.33 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 96.31 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.31 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.26 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.23 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.2 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.2 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.17 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.16 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.15 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 96.09 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.07 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.07 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.07 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.06 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.01 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.0 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.99 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.99 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.96 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.95 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.94 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 95.89 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.88 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.85 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.83 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.83 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.8 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.8 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.8 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.78 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.75 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.75 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.74 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.72 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.72 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.71 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.7 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.68 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.66 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.62 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.58 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.58 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.57 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.53 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.51 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.51 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.49 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.45 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.39 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.31 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.27 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.23 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.19 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.15 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.14 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.09 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 95.08 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.07 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.06 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.05 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.02 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.99 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.99 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.96 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.96 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.95 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.95 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.93 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.9 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.89 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.89 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.86 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.84 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.83 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.83 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.82 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.82 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.81 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.81 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.79 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.77 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.74 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.72 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.71 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.69 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.69 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.68 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.66 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.66 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.66 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.64 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.63 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.63 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.63 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.62 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.58 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.57 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.54 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.53 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.52 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.52 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.52 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.47 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.44 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.43 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.39 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 94.39 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.38 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.35 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.34 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.33 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.32 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.31 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.3 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.29 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.29 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.28 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.2 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.19 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.18 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.18 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.17 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.16 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.15 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.1 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.1 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.07 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.03 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.02 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 93.98 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.96 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 93.96 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.95 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 93.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 93.93 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.92 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.91 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.91 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 93.88 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.87 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.87 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.87 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.84 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.83 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 93.81 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.8 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.79 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.79 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.78 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.78 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.76 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.76 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 93.76 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.73 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 93.72 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.69 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.65 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.64 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 93.63 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.62 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.58 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.56 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.56 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.56 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.56 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.55 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 93.54 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.54 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.52 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.52 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.51 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.5 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.49 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.48 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.48 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.47 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.47 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.46 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.46 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.45 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.45 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.44 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.44 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.43 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.42 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.4 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.4 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.38 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.36 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.34 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.34 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.3 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.25 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.22 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.2 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.19 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.17 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.15 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.15 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 93.13 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.13 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.08 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.08 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.07 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.06 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.06 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.03 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.03 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 92.95 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.88 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 92.85 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 92.79 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.67 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.66 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.55 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.55 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.46 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.41 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.4 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.34 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.27 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.23 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.19 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.17 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.09 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.01 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.89 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 91.8 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.74 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 91.7 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=397.79 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|..+. ....+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 24 mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~---G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 24 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESE 99 (366)
T ss_dssp CEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECSSCCHHH
T ss_pred eEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 599999999996421 23579999999999999999999999999999999999999875 9999999986431
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.+|||+|++.+++.+||+||+.+... +++.+..++++.+|||||||||+|||||+
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 3569999999999999999999988632 24555567788999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|+||||||||||||+.++..|+++|+++++ .|+|||+++|+. .++.++||||++|++|++++.|++++++.
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999985 499999987765 68889999999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=396.13 Aligned_cols=198 Identities=30% Similarity=0.463 Sum_probs=177.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---Y 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++.... .
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC---eEEEECCEECCCCCHHH
Confidence 489999999994 3579999999999999999999999999999999999999875 9999999986432 3
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|++.+++.+||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|+|
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 579999999999999999999988632 3455556778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||||+||+..+.++.+.|++++++ |+|+|+++|+ ..++..+||||++|++|+++..|+++++.+
T Consensus 155 LLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999999999999754 9999997776 468999999999999999999999998864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=373.79 Aligned_cols=198 Identities=30% Similarity=0.367 Sum_probs=170.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||++.|..+. ..+.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 68999999996321 12469999999999999999999999999999999999999875 9999999986432
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHHc----------------------CCCccc-cccCCCCCHHHHHHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL----------------------QLPGFF-CQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------------~l~~~~-~~~~~~LSGGqrqRv~IA 233 (697)
++.+|||+|++.+++.+||+||+.++... ++.+.. ++++.+|||||||||+||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 13599999999999999999999875321 233322 567789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||+.+|++|||||||+|||+.++.++++.|++++++ |+|||+++|+.. +.++||+|++|++|+++..+++++.
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999999865 999999888763 4589999999999999999988764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=395.09 Aligned_cols=198 Identities=23% Similarity=0.352 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----CC-
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----EM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~----~~- 179 (697)
.++++||+++|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++. ..
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 489999999993 3579999999999999999999999999999999999999875 9999999875 11
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+|||+|+..+++.+||+||+.|+. .+++.+..++++.+|||||||||+|||||+.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1357999999999999999999998742 2345556678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||||||+..+.++++.|+++. +.|+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999888875 5699999977764 68899999999999999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=380.13 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+++|.+ ...+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 7 ~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~---G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eEEEECCEECCcccccH
Confidence 5899999999842 2359999999999999999999999999999999999999875 9999999986321
Q ss_pred ---CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ---YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ---~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.+|||+|++. .+..+||+||+.++.. +++.+..++++.+|||||||||+|||||+
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 246999999862 3347899999988642 23444456777999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|++|||||||+|||+.++..++++|++++ ++|+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998 6699999988876 47888999999999999999999998764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=377.18 Aligned_cols=198 Identities=25% Similarity=0.283 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccccccc
Confidence 489999999983 3469999999999999999999999999999999999999875 999999987641
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHHH-H-------------------cCCCcc-ccccCCCCCHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA-L-------------------LQLPGF-FCQRKNGLPCG 225 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~-------------------l~l~~~-~~~~~~~LSGG 225 (697)
.++.++||+|++.+++.+||+||+.+.. . +++.+. .++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGG 157 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence 1246999999999999999999998742 1 234444 56778899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||++++|++|++++.|+
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999977764 57888999999999999999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++.+
T Consensus 237 ~~~~~~ 242 (262)
T 1b0u_A 237 PEQVFG 242 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=375.94 Aligned_cols=198 Identities=25% Similarity=0.332 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~-~- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++.. . .
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---cEEEECCEECCCccccH
Confidence 489999999983 3469999999999999999999999999999999999999875 99999998763 1 1
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHH-H-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-L-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.++||+|++.+++.+||+||+.+.. . +++.+..++.+.+|||||||||+|||||+
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 245999999999999999999998853 1 12333345667899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987799999977764 57888999999999999999999988754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=365.02 Aligned_cols=192 Identities=27% Similarity=0.337 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE---GKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE---EEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 489999999984 2469999999999999999999999999999999999999875 9999999886431
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.+.++||+|++.+++.+||+||+.+... +++.+..++++.+|||||||||+|||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1469999999999999999999987532 2344445667789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. ..+ ++||++++|++|++++.|+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999987799999988875 455 89999999999999999863
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=371.63 Aligned_cols=199 Identities=28% Similarity=0.324 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++....
T Consensus 15 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCccHHHH
Confidence 589999999983 3479999999999999999999999999999999999999875 9999999876432
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++++.+|||||||||+|||||+.+|+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2469999999999999999999987532 233344556778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
||||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|+++++.+.
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999987899999988875 578889999999999999999999887653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=369.65 Aligned_cols=197 Identities=23% Similarity=0.325 Sum_probs=173.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 6 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999999875 9999999986431
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH------------------c-CCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL------------------L-QLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------------l-~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++.+++.+||+||+.+... + ++.+..++++.+|||||||||+|||||+.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2349999999999999999999987421 1 122334566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999987899999988875 5788899999999999999999988764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-44 Score=385.44 Aligned_cols=198 Identities=25% Similarity=0.417 Sum_probs=176.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .+
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCc---cEEEECCEECCCCChhh
Confidence 389999999983 3469999999999999999999999999999999999999875 999999988632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|+..+++++||+||+.|+. .+++.+..++++++|||||||||+|||||+.+|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 57999999999999999999998742 13344556678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999754 99999988765 57889999999999999999999998864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=371.07 Aligned_cols=195 Identities=22% Similarity=0.295 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999886432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHc--------------------------------CCCccccccCCCCCHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALL--------------------------------QLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------------------~l~~~~~~~~~~LSGGq 226 (697)
++.++||+|++.+++.+||+||+.+.... ++.+..++.+.+|||||
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 23599999999999999999999875321 11122344568999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|++
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999987899999988876 467889999999999999999998
Q ss_pred hh
Q 005423 307 LA 308 (697)
Q Consensus 307 ~~ 308 (697)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=386.50 Aligned_cols=198 Identities=25% Similarity=0.387 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCc---cEEEECCEECccccccc
Confidence 489999999983 3469999999999999999999999999999999999999875 999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+|||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHH
Confidence 23579999999999999999999988642 2344455677899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999754 99999988775 68889999999999999999999998864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-44 Score=385.40 Aligned_cols=198 Identities=26% Similarity=0.411 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHhH
Confidence 389999999883 3469999999999999999999999999999999999999875 999999988632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 154 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV 154 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 579999999999999999999988532 2345556678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 155 LLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp EEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999754 99999987765 68889999999999999999999998864
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=383.98 Aligned_cols=200 Identities=25% Similarity=0.406 Sum_probs=176.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (697)
..++++||++.|+ +.+++|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK---GDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECCcCChh
Confidence 4699999999883 13469999999999999999999999999999999999999875 999999988632 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+|||+|+..+++.+||+||+.|+.. +++.+..++++.+|||||||||+|||||+.+|+
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999988532 234445567789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999754 99999977764 68889999999999999999999998764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=368.70 Aligned_cols=197 Identities=24% Similarity=0.304 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 11 ~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 11 LLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPKA 82 (266)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHHH
T ss_pred eEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHHH
Confidence 689999999984 3579999999999999999999999999999999999999875 9999999986432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-----------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh----
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-----------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM---- 238 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-----------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~---- 238 (697)
.+.++|++|++.+++.+||+||+.++. .+++.+..++.+.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 245999999998888899999997742 2334445567778999999999999999999
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 --RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 --~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++.+++++|++++++ |+|||+++|+ ..++.++|||+++|++|++++.|+++++.
T Consensus 163 ~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp SCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred CCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999865 5799987776 46788899999999999999999998875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=385.27 Aligned_cols=198 Identities=26% Similarity=0.377 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEecccccCcc--eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.|. .+. +|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECccccc
Confidence 389999999984 245 9999999999999999999999999999999999999875 999999986421
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 23579999999999999999999987421 234455567789999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999975 499999988775 57889999999999999999999998764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=384.82 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECCEECCCCChhh
Confidence 389999999983 3469999999999999999999999999999999999999875 999999988632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|+..+++++||+||+.|+. .+++.+..++++++|||||||||+|||||+.+|++
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 57999999999999999999998742 23455556778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999764 99999988765 57889999999999999999999998864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=381.59 Aligned_cols=196 Identities=25% Similarity=0.356 Sum_probs=174.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (697)
++++||++.|. .+ +|+|||+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++.... ++
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC---cEEEECCEECCCCchhhC
Confidence 68899999883 34 9999999999999999999999999999999999999875 9999999986432 35
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|++||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 69999999999999999999988632 23445566788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999975 489999988765 57889999999999999999999998753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=362.25 Aligned_cols=194 Identities=26% Similarity=0.361 Sum_probs=170.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|. .+|+|||+++++ |+++|+||||||||||+|+|+|+++|++ |+|.++|++... .++
T Consensus 2 l~~~~l~~~y~-------~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-------NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-------TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-------CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCchhhC
Confidence 57899999983 159999999999 9999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHH-----------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSA-----------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~-----------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.++||+|++.+++.+||+||+.+.. .+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7999999999999999999997631 12344445677889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||+|||+.++..+++.|+++++ +|+|||+++|+. .++.++||++++|++|++++.|+++++.+
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999975 499999988875 57888999999999999999999988754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=362.57 Aligned_cols=204 Identities=23% Similarity=0.341 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (697)
.++++||++.|..++...+++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEECchHHhhh
Confidence 378999999984110001469999999999999999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCcc-ccCCCCCHHHHHHHHH------------------HcCCC--ccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 183 SYGFVERET-TLIGSLTVREYLYYSA------------------LLQLP--GFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~e~l~~~~------------------~l~l~--~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
.++||+|++ ..++.+||+||+.+.. .+++. +..++.+.+|||||||||+|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 799999995 4566789999998742 12344 44566778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
||||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+||++++|++|++++.|+++++.+.
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999877999999888764 67788999999999999999999887653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-43 Score=369.60 Aligned_cols=196 Identities=22% Similarity=0.374 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|++ .+.+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|.++...
T Consensus 53 ~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS---GCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE---EEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---cEEEECCEEcccCCHHH
Confidence 5999999999852 3569999999999999999999999999999999999999875 9999999986532
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH-------------cC-------CCc----cccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQ-------LPG----FFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~-------l~~----~~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|+ .||+||+.++.. .+ +|. ...+...+|||||||||+||||
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 356999999999985 599999987421 11 221 2234557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|+. ..+.. ||+|++|++|++++.|+++++++
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999874 68999877765 45655 99999999999999999998765
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=365.57 Aligned_cols=197 Identities=24% Similarity=0.303 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~-- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++.. ..
T Consensus 21 ~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTBCCC---CCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---eEEEECCEEcccccCCH
Confidence 599999999984 3469999999999999999999999999999999999999875 99999998754 21
Q ss_pred ---CccEEEEcCccccC--CCCCHHHHHHHHH-----------------------HcCCCccccccCCCCCHHHHHHHHH
Q 005423 181 ---YGSYGFVERETTLI--GSLTVREYLYYSA-----------------------LLQLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~--~~lTV~e~l~~~~-----------------------~l~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
++.++||+|++.++ +.+||+||+.++. .+++.+..++++.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 24699999997643 3569999997631 1223333456678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999998779999 9988875 4677899999999999999999988764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=357.77 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=162.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~-- 180 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999984 34799999999999999999999999999999999998 5665 49999999986432
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCC-ccccccCCC-CCHHHHHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLP-GFFCQRKNG-LPCGERRRVRI 232 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~-~~~~~~~~~-LSGGqrqRv~I 232 (697)
+..++|++|++.+++.+||+||+.+... +++. +..++.+.+ |||||||||+|
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1348999999999999999999976431 1232 334556677 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCch
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~ 307 (697)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+ ||++++|++|++++.|+++
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999777999999888864 66677 5999999999999999987
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=356.34 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=167.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHH
Confidence 36899999999831 13479999999999999999999999999999999999999875 9999999986431
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCc-----------cccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPG-----------FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~-----------~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++ .||+||+.+.. .+++.+ ...+...+|||||||||+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 246999999998886 59999997631 011211 122345799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ +.||++++|++|++++.|+++++.
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999995 6899999888764 44 459999999999999999988765
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=361.67 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|.+. ..+.+|+|||+.+++||+++|+||||||||||||+|+|+++|+. |+|.++|++....
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEcccCCHHH
Confidence 49999999988421 12579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH--------------c-----------CCCccccccCCCCCHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL--------------L-----------QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l-----------~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++ .||+||+.+... . ++....++++.+|||||||||+|||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 246999999998887 599999977311 0 1112234567899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||+++|++ ..+. .||++++|++|++++.|+++++.+
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999974 589999988875 4554 599999999999999999988754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=352.58 Aligned_cols=189 Identities=25% Similarity=0.342 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.|.. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.+ ++.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ---GKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSE---EEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEE--------eccE
Confidence 4899999999841 3479999999999999999999999999999999999999875 99982 2569
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+++.+||+||+.+... +++.+..++.+.+|||||||||+|||||+.+|+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999999989999999987531 122233445668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||||+|||+.++..+++.|++++++ |+|||+++|+. .++.++||++++|++|+ ++.|+++++.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999876 99999988875 57778999999999999 9999988764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=354.53 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~-- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 489999999983 347999999999999999999999999999999999994 444 49999999875321
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCC-ccccccCC-CCCHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLP-GFFCQRKN-GLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~-~~~~~~~~-~LSGGqrq 228 (697)
+..++|++|++.+++.+||.|++.+... +++. ...++.+. +|||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 1248999999999999999999865320 1222 12334455 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+ ||++++|++|++++.|+++
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999987799999988875 456665 8999999999999999998
Q ss_pred hhHHhhhhcCC
Q 005423 308 ACLQHFSNAGF 318 (697)
Q Consensus 308 ~~~~~f~~~g~ 318 (697)
++.. ++..|+
T Consensus 251 ~~~~-~~~~~~ 260 (267)
T 2zu0_C 251 LVKQ-LEEQGY 260 (267)
T ss_dssp HHHH-HHTTTC
T ss_pred HHhh-hhhcch
Confidence 7653 333333
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=351.17 Aligned_cols=192 Identities=24% Similarity=0.315 Sum_probs=168.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++. .+|+|+|+++++||+++|+||||||||||+|+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4789999864 589999999999999999999999999999999999987 3 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCC----
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH---- 241 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~---- 241 (697)
++.++|++|++.+++.+||+||+.+.. .+++.+..++.+.+|||||||||+|||||+.+|+
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 246999999999998999999997631 1244445567778999999999999999999999
Q ss_pred ---EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 242 ---VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 242 ---iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||||+|||+.++..+++.|++++++|+|||+++|+. ..+.++||++++|++|++++.|+++++.
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999987799999977765 5777899999999999999999988764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=354.11 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=165.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++||++.|+ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999873 13469999999999999999999999999999999999999875 999999987532 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH--------------HcCCCccc-----------cccCCCCCHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA--------------LLQLPGFF-----------CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l~l~~~~-----------~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+++ .||+||+.+.. .+++.+.. .+...+|||||||||+||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 356999999999887 59999997641 11222222 23457999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|+++++.+
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999997 6999999888753 55 4699999999999999999887653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=349.55 Aligned_cols=197 Identities=25% Similarity=0.367 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|.++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|++++ . |+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~---G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E---GDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-E---EEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-C---eEEEECCEEhhhcCHHH
Confidence 59999999988421 124699999999999999999999999999999999999875 3 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcC-------CCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQ-------LPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~-------l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++ .||+||+.++. .++ ++.. ..+++.+|||||||||+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 1356999999999886 59999997631 011 1111 124567999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+||||||||+|||+.++..+++.|+++++ |+|||+++|++. .+ +.||++++|++|++++.|+++++..
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999975 899999888864 44 4699999999999999999888754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=346.65 Aligned_cols=194 Identities=23% Similarity=0.347 Sum_probs=167.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCcc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (697)
++++|+++.|.+.. ..+.+|+|+|++++ ||+++|+||||||||||+|+|+|++ |++ |+|.++|++.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~---G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS---GNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE---EEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC---cEEEECCEECcchHHhhh
Confidence 68999999985310 11469999999999 9999999999999999999999999 864 99999998742 12457
Q ss_pred EE-EEcCccccCCCCCHHHHHHHHH---------------HcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 184 YG-FVERETTLIGSLTVREYLYYSA---------------LLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
++ |++|++.+ .+||+||+.+.. .+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99 99999887 789999998743 23455 5566778999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC-EEEEEeCCeEEEEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|||+.++..+++.|+++++ |||+++|++ .++.++|| ++++|++|++++.|+++++.+
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999864 899988876 46778999 999999999999999988764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=342.59 Aligned_cols=189 Identities=22% Similarity=0.335 Sum_probs=159.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.|.. ..+++|+|||+++++||+++|+||||||||||+|+|+|+++|.. |+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCc---cEEEECC--------EE
Confidence 5899999998842 23579999999999999999999999999999999999999875 9999998 38
Q ss_pred EEEcCccccCCCCCHHHHHHHHH------------HcCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSA------------LLQLPGF-----------FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+|++|++.+++. ||+||+.+.. ..++.+. ..+...+|||||||||+|||||+.+|+
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998875 9999997631 1111111 112347999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+++. ++++. +|+|||+++|++ ..+ ..||++++|++|++++.|+++++.+
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999997 45665 488999988875 455 4599999999999999999887653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=340.39 Aligned_cols=186 Identities=20% Similarity=0.313 Sum_probs=159.7
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
+..++++||++.|. . ++|+|||+++++||+++|+||||||||||||+|+|+++|+. |+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEhhhhcC
Confidence 45799999999873 3 69999999999999999999999999999999999999875 999999987542345
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.++||+|++.+++.+||+||+.+... +++... ++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 79999999999999999999987532 123333 566789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
||||+|||+.++..+++.|++++++|+|||+++|++. ++..+||+++++ +|+|
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999877899999998874 677888988755 3443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=342.81 Aligned_cols=189 Identities=20% Similarity=0.313 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.|.. ..+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEE---EEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC--------EE
Confidence 3899999998842 13579999999999999999999999999999999999998864 9999998 38
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH------------cCC-------Cc----cccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL------------LQL-------PG----FFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l-------~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+ +.+||+||+.+... +++ +. ..++++.+|||||||||+|||||+.+|+
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999865 57899999976421 111 10 1245678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||||+|||+.++..+++.|+ +++ +|+|||+++|+.. .+ ..||++++|++|++++.|+++++.+
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999999999999999995 443 5899999888875 44 5799999999999999999887654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=366.12 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||+++|.. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++ + +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999852 23579999999999999999999999999999999999986 4 49999999876432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHH------------HHcCCCccccccCCC-----------CCHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYS------------ALLQLPGFFCQRKNG-----------LPCGERRRVRIARE 235 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~------------~~l~l~~~~~~~~~~-----------LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+++ +||+||+.+. ..+++.+..++.+.+ |||||||||+||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 257999999999997 6999999631 223444445556655 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+||||||||||||+.++.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++++.+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999875 578999977775 3456799999999999999999999865
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=373.01 Aligned_cols=198 Identities=27% Similarity=0.415 Sum_probs=170.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER---GRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE---EEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEECCEEcccCCHH
Confidence 36999999999853 23579999999999999999999999999999999999999875 9999999876432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++. ||+||+.++. .. ++|+ ...++..+||||||||++|||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lAR 492 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHH
Confidence 3579999999999965 9999997631 01 1222 224566899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++.++.+.|+++. +|+|+|+++|++. .+ ..||+|++|++|++++.|+++++.+
T Consensus 493 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 5899999888864 44 5899999999999999999998865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=371.03 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHH
Confidence 36999999999853 23579999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++. ||+||+.++. .. ++|.. ..++..+||||||||++|||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAr 490 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHH
Confidence 3469999999999976 9999997641 01 12221 23445789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|++|+|||||||||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 491 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 491 IFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999986 4789999888865 44 5699999999999999999998764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=369.70 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|++++|++. .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLT 413 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHH
Confidence 359999999999531 2569999999999999999999999999999999999999876 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------cCCCc-----------cccccCCCCCHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------LQLPG-----------FFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l~~-----------~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++||+|++.+++. ||+||+.++.. +++.+ ...++..+||||||||++||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 23579999999999974 99999987530 11111 11234478999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999874 899999888874 44 4799999999999999999988754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=370.49 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|+++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 341 ~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~---G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 341 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDGHDLREYTLAS 414 (582)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETTEETTTBCHHH
T ss_pred cEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC---CeEEECCEEccccCHHH
Confidence 59999999998521 2579999999999999999999999999999999999999875 9999999986432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH--------------cCC-------Cc----cccccCCCCCHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL--------------LQL-------PG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l-------~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++. ||+||+.++.. +++ |+ ...++..+||||||||++|||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 3469999999999875 99999987530 011 11 112345789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999975 899999888864 44 5799999999999999999988764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=373.00 Aligned_cols=197 Identities=23% Similarity=0.365 Sum_probs=168.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|+++.|++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 353 ~~i~~~~v~~~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR---GQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCEEEEEEECCSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE---EEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC---eEEEECCEEhhhCCHH
Confidence 35999999998852 3469999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------c----------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------L----------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------l----------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++ .||+||+.++.. + ++|+. ..+...+||||||||++|||
T Consensus 426 ~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp HHHHHEEEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhceEEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 357999999999986 599999987421 1 11111 11223689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999986 5899999888875 45 4599999999999999999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=334.74 Aligned_cols=184 Identities=22% Similarity=0.349 Sum_probs=145.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEE---EEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECC--------EE
Confidence 5899999874 1369999999999999999999999999999999999998864 9999998 38
Q ss_pred EEEcCccccCCCCCHHHHHHHHH------------HcCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSA------------LLQLPGF-----------FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+|++|++.+++. ||+||+. +. ..++.+. ..+...+|||||||||+|||||+.+|+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEeCCCccCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 999999988875 9999996 21 0111111 112347999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+++.+ ++++ +|+|||+++|+. ..+ ..||++++|++|++++.|+++++.+
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999974 5554 589999988875 455 4699999999999999999988753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=386.16 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=170.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+++|+.+ ...++|+|||++|+|||.+||+||||||||||+++|.|+++|.+ |+|.+||.++...
T Consensus 1076 ~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp CEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHHH
T ss_pred eEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHHH
Confidence 59999999999642 24579999999999999999999999999999999999999876 9999999987542
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH---------------H-------cCCCccc----cccCCCCCHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA---------------L-------LQLPGFF----CQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------~-------l~l~~~~----~~~~~~LSGGqrqRv~IA 233 (697)
++++++|+|++.+|.. |++|||.|+. . ..+|+.+ .+....||||||||++||
T Consensus 1151 lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1151 TRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp HHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred HHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 4679999999999965 9999986541 1 1233322 334568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|..+. ...||+|+||++|+|+++|+++++++
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998875 57899998887753 45799999999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=378.74 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=172.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++|.|++. ..+++|+|+|+++++||++||+||||||||||+++|.|+++|.+ |+|.+||.++...
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~---G~I~idG~~i~~~~~~~ 489 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK---GKITIDGVDVRDINLEF 489 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc---CcccCCCccchhccHHH
Confidence 59999999999642 34679999999999999999999999999999999999999875 9999999987543
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|. .|++||+.|+. .. .+|+. ..++...||||||||++||||
T Consensus 490 lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHHHEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred HhhcccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 357999999999995 59999998752 11 23332 234557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++..|.+.|+++. +|+|+|+++|+.+ ..+.||+|++|++|+|++.|+.+|+.+
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999999999987 5889999899875 457899999999999999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=372.00 Aligned_cols=199 Identities=23% Similarity=0.333 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|+++ ...++|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~---G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD---GMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE---EEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEHHhCCHH
Confidence 359999999999632 23479999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.+|||+|++.+++. ||+||+.++.. .++|.. ..++..+|||||||||+|||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHH
Confidence 3469999999999975 99999988521 112322 23455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+. +.+ ..||+|++|++|++++.|+.+++.+
T Consensus 540 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998875 589999977775 455 4599999999999999999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=368.71 Aligned_cols=199 Identities=25% Similarity=0.358 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|++. ...++|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.+||.++...
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~---G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA---GSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE---EEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEcccCCHH
Confidence 359999999999632 23469999999999999999999999999999999999999875 9999999886432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccc----cccCCCCCHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFF----CQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~----~~~~~~LSGGqrqRv~I 232 (697)
++.++||+|++.+++ .||+||+.++.. .++|+.. .+....|||||||||+|
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH
Confidence 457999999998885 699999965310 1233222 23456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||+.+|+||||||||+|||+.++..|.+.|+++. +|+|+|+++|+.. .+ ..||||++|++|++++.|+++++++
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999998864 5899999888775 45 5599999999999999999998765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=331.91 Aligned_cols=191 Identities=20% Similarity=0.196 Sum_probs=165.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++.+. ...|+++++.+++||++||+||||||||||||+|+|+++|+. |+|.+ ..
T Consensus 355 ~~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~--------~~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEW--------DL 417 (607)
T ss_dssp CEEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCC--------CC
T ss_pred ceEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEE--------ee
Confidence 34689999998773 246899999999999999999999999999999999999875 98876 24
Q ss_pred cEEEEcCccccCCCCCHHHHHHHH-H--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYS-A--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~-~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|+..+.+.+||.|++... . .+++.+..++.+.+|||||||||+|||+|+.+|+||||||
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE 497 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE 497 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 699999998777789999988643 1 1244555667789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 311 (697)
||+|||+.++..++++|++++ +.|.|||+++|+ ..++..+|||+++|++ |+++..|+++++.+
T Consensus 498 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 498 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999997 468999997776 4688899999999986 88999999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=325.86 Aligned_cols=191 Identities=21% Similarity=0.201 Sum_probs=163.8
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++.+. ...|+++|+++++||++||+||||||||||+|+|+|+++|.. |+|.+ ..
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~--------~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEW--------DL 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCC--------CC
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE--------Cc
Confidence 34689999998873 146899999999999999999999999999999999999875 98875 13
Q ss_pred cEEEEcCccccCCCCCHHHHHHHH-H--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYS-A--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~-~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|+....+.+||.|++... . .+++.+..++.+..|||||||||+|||+|+.+|+||||||
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE 427 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 599999998777788999988643 1 0123334456778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 311 (697)
||+|||+.++..++++|++++ +.|.|||+++|+ ..++..+||||++|++ |+++..|+++++.+
T Consensus 428 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 428 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999997 468999997775 5688899999999986 88999999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=321.93 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=160.3
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++.+. ...|+++|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------- 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQ------- 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSCC-------
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCe-------
Confidence 34689999998873 246888899999999999999999999999999999999875 99987653
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.++|++|+.......||.||+.+... +++.+..++.+.+|||||||||+|||||+.+|+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 58999998776667899999976311 12223345677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACL 310 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~ 310 (697)
|||+|||+.++.+++++|+++++ .|+|||+++|+ ..++..+||||++|++ |.....+++.++.
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD-LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999985 58999997665 5688899999999986 6666677765543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=326.67 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=133.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAK 176 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl---------------------~~L~G~~~~~~~----~~G~I~i~G~~ 176 (697)
.+.+|+|||+++++||++||+||||||||||+ +++.|+.+|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34699999999999999999999999999998 888888777521 13677777764
Q ss_pred CC-CCCccEEEEcCcccc-------------------CCCCCHHHHHHHHHH---------------------------c
Q 005423 177 SE-MPYGSYGFVERETTL-------------------IGSLTVREYLYYSAL---------------------------L 209 (697)
Q Consensus 177 ~~-~~~~~~~yv~Q~~~l-------------------~~~lTV~e~l~~~~~---------------------------l 209 (697)
.. .++..+++|+|...+ ++.+||+||+.+... +
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 32 223445666554332 356789999876321 1
Q ss_pred CCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHH
Q 005423 210 QLPGF-FCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 210 ~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
++... .++.+.+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+++|+. ..+
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~- 267 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM- 267 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH-HHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHH-
Confidence 22221 356678999999999999999999998 9999999999999999999999999998899999988775 344
Q ss_pred hccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 287 GLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 287 ~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
..||++++| ++|++++.|+++++.+
T Consensus 268 ~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 268 LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 569999999 8999999999988753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=317.16 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=155.8
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~G-----e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
+++++.|+. ...+++++|+++++| |+++|+||||||||||+|+|+|+++|++ |+. .....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~--------~~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD--------IPKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC--------CCSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC--------ccCCc
Confidence 345555532 235788999999888 7899999999999999999999999875 752 12346
Q ss_pred EEEEcCccccCCCCCHHHHHHHH---------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYS---------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~---------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
++|++|+.......||+|++... ..+++.+..++.+.+|||||||||+|||||+.+|+|||||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEP 494 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP 494 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 89999987666667999987532 123445556778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhHHh
Q 005423 249 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 312 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 312 (697)
|+|||+.++..++++|++++ +.|.|||+++|+ ..++..+||||++|++ |+++..|+++++++-
T Consensus 495 T~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 495 SAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999996 569999997766 5688899999999986 999999999988753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-32 Score=311.76 Aligned_cols=184 Identities=23% Similarity=0.192 Sum_probs=147.4
Q ss_pred EEE-EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 005423 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (697)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~ 175 (697)
..+ +||++.|.+ ...+|+|+| .+++||++||+||||||||||+|+|+|+++|+. |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 344 588888832 124899999 999999999999999999999999999998875 775 35664
Q ss_pred eCC-------CCCccEEEEcCccccCCC---CCHHHHHHHH----------HHcCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYS----------ALLQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
+.. .....+++++|+....+. .|+.|++... ..+++....++.+.+|||||||||+||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 321 112357888887544332 3888887432 23456666677889999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
|+.+|+||||||||++||+.++..+++.|++++++|+|||+++|+ ..++..+||+|++|++|
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd-~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD-LAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEE
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999998889999997776 56888999999999865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-32 Score=314.06 Aligned_cols=182 Identities=24% Similarity=0.236 Sum_probs=147.6
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~~~~~ 179 (697)
+||++.|.+ ...+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.+...
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 777887731 124899999 999999999999999999999999999998875 775 355643211
Q ss_pred -------CCccEEEEcCccccCC---CCCHHHHHHH----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 -------PYGSYGFVERETTLIG---SLTVREYLYY----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~e~l~~----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
....+++++|.....+ ..||.|++.. ...+++....++.+.+|||||||||+|||||+.+
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~ 246 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRK 246 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 1234788888643322 2389998743 2245666667788899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
|+||||||||+|||+.++..+++.|++++++|+|||+++|+ ...+..+||+|++|+++.
T Consensus 247 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd-l~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 247 AHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD-LAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEESCT
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC-hHHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999998889999997776 467888999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=315.20 Aligned_cols=188 Identities=20% Similarity=0.279 Sum_probs=154.6
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
+..+...|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 44678789999883 3579999999999999999999999999999999995 222 3433211 12
Q ss_pred cEEEEcCcc-ccCCCCCHHHHHHH------------HHHcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 183 SYGFVERET-TLIGSLTVREYLYY------------SALLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~e~l~~------------~~~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
.++|++|+. .+++.+||.|++.+ ...++++ ...+++..+|||||||||+|||+|+.+|+|||||||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred eEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 478999874 67788999999864 1123443 345677889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 249 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
|+|||+.++..+.+.|++ .|+|||+++|+ ..++.++||++++|++|+++ +.|+.+++..
T Consensus 576 Ts~LD~~~~~~l~~~L~~---~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNYLNT---CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTTCCHHHHHHHHHHHHH---SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHh---CCCEEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999998 58999997776 56888999999999999997 6899887654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=311.26 Aligned_cols=183 Identities=23% Similarity=0.245 Sum_probs=138.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMP 180 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~----------------------G~~~~~~~~~G~I~i~G~~~~~~ 180 (697)
..+|+|||++|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35799999999999999999999999999998754 22222 26777777653210
Q ss_pred C----------------------------------------------ccEEEEcCccccC--------------------
Q 005423 181 Y----------------------------------------------GSYGFVERETTLI-------------------- 194 (697)
Q Consensus 181 ~----------------------------------------------~~~~yv~Q~~~l~-------------------- 194 (697)
. ...|++.|+..++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 0 0112333322222
Q ss_pred ------------CCCCHHHHHHHHH-------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 005423 195 ------------GSLTVREYLYYSA-------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRP---HVLFI 245 (697)
Q Consensus 195 ------------~~lTV~e~l~~~~-------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlL 245 (697)
..+||.||+.+.. .+++.. ..++.+.+|||||||||+|||||+.+| +||||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 2478999987632 123322 245677899999999999999999987 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
||||+|||+.++.+++++|++++++|+|||+++|+.. .+ ..||+|++| ++|++++.|+++++.+
T Consensus 571 DEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 571 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 9999999999999999999999988999999888753 44 679999999 8999999999998753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=317.00 Aligned_cols=186 Identities=22% Similarity=0.315 Sum_probs=143.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|++ ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~s---G~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS---GEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSE---EEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEcCc------cc
Confidence 46999999998842 12579999999999999999999999999999999999999875 99999863 13
Q ss_pred EEEEcCcccc----CCCCCHHHHHHH------------------------------------------------------
Q 005423 184 YGFVERETTL----IGSLTVREYLYY------------------------------------------------------ 205 (697)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~e~l~~------------------------------------------------------ 205 (697)
++|++|+... ....|+.|++.+
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 5555554310 001222222211
Q ss_pred ------------------------------------------------------------------HHHcCCCcc--ccc
Q 005423 206 ------------------------------------------------------------------SALLQLPGF--FCQ 217 (697)
Q Consensus 206 ------------------------------------------------------------------~~~l~l~~~--~~~ 217 (697)
...+++... .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 112233322 245
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 218 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
++++|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ |.|||+++|+ ...+.++||++++|++
T Consensus 898 ~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD-~e~v~~l~DrVivL~~ 973 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS-AEFTKNLTEEVWAVKD 973 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSC-HHHHTTTCCEEECCBT
T ss_pred CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECC-HHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999888765 5689887776 4678889999999999
Q ss_pred CeEEEEeC
Q 005423 298 GNTLFFGE 305 (697)
Q Consensus 298 G~iv~~G~ 305 (697)
|+++..|+
T Consensus 974 G~Iv~~G~ 981 (986)
T 2iw3_A 974 GRMTPSGH 981 (986)
T ss_dssp TBCCC---
T ss_pred CEEEEeCC
Confidence 99987774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=290.42 Aligned_cols=174 Identities=20% Similarity=0.195 Sum_probs=132.9
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCccEE
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (697)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677766 589999999999999999999999999999876 8772 33321100 000112
Q ss_pred EEcCcccc------CCCCCHHHHHHH------------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 186 FVERETTL------IGSLTVREYLYY------------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 186 yv~Q~~~l------~~~lTV~e~l~~------------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+.+|.... -+..++.+++.. ...+++....++.+.+|||||||||+|||||+.+|+||||||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE 247 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 22332111 112245554422 234567777788899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
||++||+.++..+.+.|++++++|+|||+++|+ ..++..+||+|++|++|..++
T Consensus 248 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd-l~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD-LSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC-HHHHHHHCSEEEEEESCTTTE
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999889999997665 568899999999999876554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=286.70 Aligned_cols=162 Identities=20% Similarity=0.226 Sum_probs=128.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCccEEEEcCc----c
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (697)
++||++||+||||||||||+|+|+|+++|+. |+| .++|++.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 4899999999999999999999999999876 887 56665431 011123333333 3
Q ss_pred ccCCCCCHHHHHHH----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 192 TLIGSLTVREYLYY----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 192 ~l~~~lTV~e~l~~----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
.++ ..+|.|++.. ...+++....++...+|||||||||+|||||+.+|+||||||||++||+.++..+.
T Consensus 100 ~~~-~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 100 KFL-KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp TTC-CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhc-cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 333 3478876642 12345656667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
+.|+++++ |+|||+++|+ ..++..+||+|++|++|..+
T Consensus 179 ~~l~~l~~-g~tii~vsHd-l~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 179 KAIRELLK-NKYVIVVDHD-LIVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp HHHHHHCT-TSEEEEECSC-HHHHHHHCSEEEEEEEETTT
T ss_pred HHHHHHhC-CCEEEEEEeC-hHHHHhhCCEEEEecCCccc
Confidence 99999976 8999997666 46889999999999876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=285.96 Aligned_cols=186 Identities=20% Similarity=0.232 Sum_probs=140.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC------
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSA---RMY------GEVFVNGAKSEM------ 179 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl---------~~L~G~~~~~~---~~~------G~I~i~G~~~~~------ 179 (697)
..|+|||+.+++|++++|+|+||||||||+ +.+.|...+.+ ... +.|.+++.+...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 45555433221 012 334454432210
Q ss_pred ----------------------------------------CCccEEEEcCccccCC------------------------
Q 005423 180 ----------------------------------------PYGSYGFVERETTLIG------------------------ 195 (697)
Q Consensus 180 ----------------------------------------~~~~~~yv~Q~~~l~~------------------------ 195 (697)
..+..|++.++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012356666555443
Q ss_pred --------CCCHHHHHHHHH-------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCC
Q 005423 196 --------SLTVREYLYYSA-------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRP---HVLFIDEPLY 250 (697)
Q Consensus 196 --------~lTV~e~l~~~~-------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTs 250 (697)
.+||.|++.|.. .+++.. ...+...+|||||||||+|||||+.+| +||||||||+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTs 837 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV 837 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTT
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCC
Confidence 368888887632 123322 235677899999999999999999876 7999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
|||+.++..+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++.+
T Consensus 838 GLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 838 GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999999999999999998899999977765 455 569999999 8999999999999864
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=288.09 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=148.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G~~---------~~~~--~~~G--- 168 (697)
..++++|++. ..|+|||+.+++||++||+|+||||||||+++|+ |.+ +++. .+.|
T Consensus 628 ~~L~v~~l~~----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGARE----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEECS----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCcc----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 4578887741 3699999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-CC-----------------------ccEEEEcCcccc----------------------CC----
Q 005423 169 ---EVFVNGAKSEM-PY-----------------------GSYGFVERETTL----------------------IG---- 195 (697)
Q Consensus 169 ---~I~i~G~~~~~-~~-----------------------~~~~yv~Q~~~l----------------------~~---- 195 (697)
.|.++|.++.. ++ +..||++|...+ .+
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888866421 11 123555553211 00
Q ss_pred ----------------------------CCCHHHHHHHH-------------HHcCCCc-cccccCCCCCHHHHHHHHHH
Q 005423 196 ----------------------------SLTVREYLYYS-------------ALLQLPG-FFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 196 ----------------------------~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA 233 (697)
.+||.|++.|. ..+++.. ..++.+..|||||||||+||
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 857 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 857 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence 35788877652 1234544 45677889999999999999
Q ss_pred HHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEe
Q 005423 234 RELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G 304 (697)
++|+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. .++ ..||+|++| ++|++++.|
T Consensus 858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEec
Confidence 9999875 99999999999999999999999999998899999977774 454 689999999 789999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+++++.+
T Consensus 936 ~~~el~~ 942 (972)
T 2r6f_A 936 TPEEVAE 942 (972)
T ss_dssp SHHHHHT
T ss_pred CHHHHHh
Confidence 9988754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=281.06 Aligned_cols=196 Identities=25% Similarity=0.256 Sum_probs=146.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHH-HHcCC-------CC--C----------
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PH--S---------- 163 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~-L~G~~-------~~--~---------- 163 (697)
..++++|+++ .+|+|||+.|++||++||+|+||||||||++. |+|++ ++ +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4688999864 26999999999999999999999999999996 77543 12 0
Q ss_pred ---CCcee-------EEEECCEeCCC-CCc-----------------------cEEE----------------------E
Q 005423 164 ---ARMYG-------EVFVNGAKSEM-PYG-----------------------SYGF----------------------V 187 (697)
Q Consensus 164 ---~~~~G-------~I~i~G~~~~~-~~~-----------------------~~~y----------------------v 187 (697)
....| .|.++|.++.. ++. ..|| +
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01356 78999876421 110 0112 1
Q ss_pred cCccccCC--------------------------------CCCHHHHHHHH-------------HHcCCCc-cccccCCC
Q 005423 188 ERETTLIG--------------------------------SLTVREYLYYS-------------ALLQLPG-FFCQRKNG 221 (697)
Q Consensus 188 ~Q~~~l~~--------------------------------~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~ 221 (697)
..+..+++ .+|+.|++.+. ..+++.. ...+.+..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCccc
Confidence 11111111 23555554432 1234433 24677789
Q ss_pred CCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE---
Q 005423 222 LPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL--- 295 (697)
Q Consensus 222 LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL--- 295 (697)
|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+++|+. .++ +.||+|++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~aDrii~L~p~ 808 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AASDWVLDIGPG 808 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECCC
Confidence 999999999999999996 799999999999999999999999999998899999977764 566 789999999
Q ss_pred ---eCCeEEEEeCchhhHH
Q 005423 296 ---SNGNTLFFGETLACLQ 311 (697)
Q Consensus 296 ---~~G~iv~~G~~~~~~~ 311 (697)
++|++++.|+++++.+
T Consensus 809 ~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 809 AGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp SGGGCCSEEEEECHHHHTT
T ss_pred CCCCCCEEEEEcCHHHHHh
Confidence 7999999999988753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=259.01 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE----
Q 005423 222 LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL---- 295 (697)
Q Consensus 222 LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL---- 295 (697)
|||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+++|++ ++...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 7999999999999999999 9999999999999999999999999998 689999988875 456889999999
Q ss_pred eCCeEEEEeC
Q 005423 296 SNGNTLFFGE 305 (697)
Q Consensus 296 ~~G~iv~~G~ 305 (697)
++|+++....
T Consensus 373 ~~G~~~~~~~ 382 (415)
T 4aby_A 373 EDGRTVSHVR 382 (415)
T ss_dssp ETTEEEEEEE
T ss_pred cCCceEEEEE
Confidence 9999886543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-29 Score=280.09 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=134.8
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCccEEEEcCcccc---CCCCCHHH
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETTL---IGSLTVRE 201 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~l---~~~lTV~e 201 (697)
.++|+.+++|++++|+||||||||||+|+|+|+.++.+ | + |.++|. .++.++|++|+..+ ...+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~---G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFN---AYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHH---CCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccC---CceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 47899999999999999999999999999999998764 9 8 999983 34678999999843 44578998
Q ss_pred HHHHHHHc-----------------CCCccccccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHH
Q 005423 202 YLYYSALL-----------------QLPGFFCQRKNGLPCGERRRVRIARE--LVMRPHV----LFIDE-PLYHLDSVSA 257 (697)
Q Consensus 202 ~l~~~~~l-----------------~l~~~~~~~~~~LSGGqrqRv~IA~a--L~~~P~i----LlLDE-PTsgLD~~~~ 257 (697)
|+ ++... ++.... ...+|||||||||+|||+ |+.+|++ ||||| ||++||+. .
T Consensus 202 ni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~--~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~ 277 (460)
T 2npi_A 202 PT-WGQSLTSGATLLHNKQPMVKNFGLERIN--ENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-L 277 (460)
T ss_dssp TT-CSCBCBSSCCSSCCBCCEECCCCSSSGG--GCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-C
T ss_pred hh-cccccccCcchHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-H
Confidence 88 53221 011111 156899999999999999 9999999 99999 99999998 5
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecCh--H---HHHhccCE-----EEEEe-CCeEEEEeCchhh
Q 005423 258 LLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 309 (697)
Q Consensus 258 ~~i~~~L~~l~~~g~tvi~tih~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 309 (697)
..+.+++++ .+.|+|+++|+.. . ++.++||+ |++|+ +|+++ .|+++++
T Consensus 278 ~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 278 AELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 445544444 3778888888765 1 56689999 99999 99999 8988765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=232.71 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=76.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 217 QRKNGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
+.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. . .+.||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCC
Confidence 455789999999999999999 699999999999999999999999999999988999999888763 3 67899
Q ss_pred EEEEEeCCeEEE
Q 005423 291 RICLLSNGNTLF 302 (697)
Q Consensus 291 ~v~vL~~G~iv~ 302 (697)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-25 Score=216.70 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=99.7
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCcccc-CCCCCHHHHHHHH
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL-IGSLTVREYLYYS 206 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l-~~~lTV~e~l~~~ 206 (697)
|||+++++||+++|+||||||||||+|++.+ |...+++.. ..++++|+..- ....++.+.+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLHYI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHH------HHHHhcCcccchhhHHHHHHHHHHH
Confidence 6899999999999999999999999998642 111121110 12455554321 1112344544332
Q ss_pred HH----cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHH
Q 005423 207 AL----LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----------------SALLMMVTLKK 266 (697)
Q Consensus 207 ~~----l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~----------------~~~~i~~~L~~ 266 (697)
.. .+... ........|||||||++|||+|+.+|++|+|||||++||+. ...++.+.|++
T Consensus 66 ~~~~~~~g~~~-~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~ 144 (171)
T 4gp7_A 66 VSKRLQLGKLT-VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKG 144 (171)
T ss_dssp HHHHHHTTCCE-EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhCCCeE-EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhh
Confidence 21 11111 12334556999999999999999999999999999999999 66899999999
Q ss_pred HHHcCCEEEEEEecChHHH
Q 005423 267 LASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 267 l~~~g~tvi~tih~~~~~i 285 (697)
++++|.|+|+++|++ .++
T Consensus 145 l~~~g~tvi~vtH~~-~~~ 162 (171)
T 4gp7_A 145 LQREGFRYVYILNSP-EEV 162 (171)
T ss_dssp HHHHTCSEEEEECSH-HHH
T ss_pred HHhcCCcEEEEeCCH-HHh
Confidence 987899999988875 344
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-24 Score=227.21 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=73.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 217 QRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.....||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ +|.++|+++|++ ++.+.||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~ 291 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLL 291 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceE
Confidence 345789999999999999997 5789999999999999999999999999985 578999988875 467899987
Q ss_pred --EEEeCCeE-EEEeCchh
Q 005423 293 --CLLSNGNT-LFFGETLA 308 (697)
Q Consensus 293 --~vL~~G~i-v~~G~~~~ 308 (697)
++|.+|+. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 78887754 44444444
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-27 Score=234.66 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=95.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCccEEEEcCccccCCCCCH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (697)
.+.+|+|| ++||+++|+||||||||||+|+|+|+ +|+. |+|.... .+....++.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35688986 79999999999999999999999999 8764 7763211 11112345799999975
Q ss_pred HHHH-HHH-----HHcCCCc--ccccc-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 200 REYL-YYS-----ALLQLPG--FFCQR-KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 200 ~e~l-~~~-----~~l~l~~--~~~~~-~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
+||+ .+. ....... ...+. ..+| ||||||+|||||+.+|++|||||||+| ++..+++.|+++ ++
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~ 148 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEAGI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GF 148 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHTTS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhCC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cC
Confidence 3333 111 1111000 00000 0144 999999999999999999999999999 889999999998 67
Q ss_pred CCEEEEEEecCh
Q 005423 271 GCTLLFTINQSS 282 (697)
Q Consensus 271 g~tvi~tih~~~ 282 (697)
|+||| ++|+..
T Consensus 149 g~tii-vtHd~~ 159 (208)
T 3b85_A 149 GSKMV-VTGDIT 159 (208)
T ss_dssp TCEEE-EEEC--
T ss_pred CCEEE-EECCHH
Confidence 89999 888763
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-25 Score=216.91 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=104.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC--c
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP--G 213 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~--~ 213 (697)
.++|+||||||||||+|+|+|+++. ...|... .... ...+.++|++|+. ++.+++ + +.+... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~~~~ 68 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFTSKK 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETTCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-HhhcCCccc
Confidence 5899999999999999999998742 1223221 1111 2235689999975 222222 0 011111 1
Q ss_pred cccccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe--cChHH
Q 005423 214 FFCQRKNGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMVTLKKLASTGCTLLFTIN--QSSTE 284 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~a-----L~~~P~iLlLDE--PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih--~~~~~ 284 (697)
...++...||||||||++||++ |+.+|++|+||| ||++||+..+..+.+.|++ .+.|+|+++| |+...
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchH
Confidence 3445667899999999999996 999999999999 9999999999999988876 5677888887 77788
Q ss_pred HHhccCEEEEEeCCeEEE
Q 005423 285 VFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 285 i~~~~D~v~vL~~G~iv~ 302 (697)
+..++|+ .+|++++
T Consensus 146 ~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 146 VKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC----TTCEEEE
T ss_pred HHHHHhc----CCcEEEE
Confidence 8888998 5567665
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-24 Score=239.26 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=120.5
Q ss_pred CcceeeeeeeEEcCCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge--------------------~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
.+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.+++. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 3568999999999999 999999999999999999999998875 99999987542 1
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHH----------HHcCCCccccccCCCCCHH--HHHHHHHHHHHhh----------C
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYS----------ALLQLPGFFCQRKNGLPCG--ERRRVRIARELVM----------R 239 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGG--qrqRv~IA~aL~~----------~ 239 (697)
.++++|++ .++.+|+.|++.+. ..+++.+. ..... |||| ||||+.||++|+. +
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred --eEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 26788874 34556665554332 11222221 12223 9999 9999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEEecChH-HHHhccCEE
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRI 292 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~tih~~~~-~i~~~~D~v 292 (697)
|++++|||||+|||+.++.++++.|+++. +.| .++++++|.... .+.+++|++
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999999999999999999999999985 332 567776665432 255566654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-23 Score=216.30 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=124.9
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccc-c
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (697)
++++|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 356788889999999999999999999999999988765 9999999765321 135899999988 8
Q ss_pred CCCCCHHHHHHHHHHcC----------CCccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHH
Q 005423 194 IGSLTVREYLYYSALLQ----------LPGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 194 ~~~lTV~e~l~~~~~l~----------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~ 261 (697)
++.+|++|++.++...+ +.+..++.+.+|| |||++|||+|+.+|+ +|+|| ||+|||+..+
T Consensus 167 ~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~---- 238 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ---- 238 (302)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH----
T ss_pred CHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH----
Confidence 88899999998764321 1111223345788 999999999999999 99999 9999998765
Q ss_pred HHHHHHH-HcCCEEEEEEecCh--------HHHHhccCEEEEEeCCeE
Q 005423 262 VTLKKLA-STGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 262 ~~L~~l~-~~g~tvi~tih~~~--------~~i~~~~D~v~vL~~G~i 300 (697)
++++. +.|.|+|+++|.+. +.+....+.|.++..|+.
T Consensus 239 --~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 --AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp --HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 34565 35889999888442 334456678888888864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-22 Score=217.02 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=107.3
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCccEEEEcCccccCCCCCHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
+++++++.+++|++++|+||||||||||+++|+|+++++. |.|.++|.+... .++.++++.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~g------------ 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFFG------------ 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEECB------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEeC------------
Confidence 7899999999999999999999999999999999999875 999999864211 1233444431
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
|||+||++||+||..+|++|++||||+ .++.+.|+.+...+.|+|+|+|.+
T Consensus 225 ----------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 225 ----------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAG 275 (330)
T ss_dssp ----------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECS
T ss_pred ----------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEccc
Confidence 899999999999999999999999998 245677887765455789989987
Q ss_pred hHHHHhccCEEEEEeCCe
Q 005423 282 STEVFGLFDRICLLSNGN 299 (697)
Q Consensus 282 ~~~i~~~~D~v~vL~~G~ 299 (697)
+ +.+.+||+++|.+|+
T Consensus 276 ~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 276 S--SEEAFIRLANMSSSN 291 (330)
T ss_dssp S--HHHHHHHHHHHHHTS
T ss_pred H--HHHHhhhheehhcCC
Confidence 5 667899999998775
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-24 Score=225.24 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=115.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++||++.|. +.+|+++|+.+++|++++|+||||||||||+++|+|++ . |+|..
T Consensus 102 i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~---G~I~~------------- 156 (305)
T 2v9p_A 102 FNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G---GSVLS------------- 156 (305)
T ss_dssp HHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T---CEEEC-------------
T ss_pred EEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C---ceEEE-------------
Confidence 67788887763 46999999999999999999999999999999999998 2 88853
Q ss_pred EEcCccccCCCCCHHH-HHH-----------HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 186 FVERETTLIGSLTVRE-YLY-----------YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e-~l~-----------~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
|++|++.++.. |++| |+. +...+ ++..++ ...|||||||| ||||+.+|+||| ||+||
T Consensus 157 ~v~q~~~lf~~-ti~~~ni~~~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 157 FANHKSHFWLA-SLADTRAALVDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp GGGTTSGGGGG-GGTTCSCEEEEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred EecCccccccc-cHHHHhhccCccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 33444433321 3333 221 11111 444443 77999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 254 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
+.++..|..+ +|++ ...+.||+| +|++|++++.|+.+++...|..
T Consensus 226 ~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 226 VQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp STTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999888621 3443 245789999 9999999999999887444443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-21 Score=211.61 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=125.3
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccc-cC
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (697)
+.+|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788899999999999999999999999999988765 9999999765321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHcCC----------CccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQL----------PGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l----------~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~~ 262 (697)
+..|++|++.++...+. .+..++.+.+|| |||++|||+|+.+|+ +|+|| ||+|||+..+.
T Consensus 225 p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---- 296 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---- 296 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH----
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH----
Confidence 88899999988643211 111223345788 999999999999999 99999 99999988653
Q ss_pred HHHHHHH-cCCEEEEEEecCh--------HHHHhccCEEEEEeCCe
Q 005423 263 TLKKLAS-TGCTLLFTINQSS--------TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 263 ~L~~l~~-~g~tvi~tih~~~--------~~i~~~~D~v~vL~~G~ 299 (697)
+++.+ .|.|+|+++|.+. +.+....+.|..+..|+
T Consensus 297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 45553 5889999888542 23445667888888776
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-23 Score=231.22 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=148.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (697)
.++.+++++.+.. ..++|+++ +.+.+||+++|+||||||||||+++|+|+.+++. |.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~---G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV---IVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE---EEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEeceecHHHHHHH
Confidence 4677888877641 35699999 9999999999999999999999999999998864 99999997 3211
Q ss_pred --------CCccEEEEcCc-cccCCCCCHHHHHHHHHHc-CCCc-c---ccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 180 --------PYGSYGFVERE-TTLIGSLTVREYLYYSALL-QLPG-F---FCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 180 --------~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~l-~l~~-~---~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
..+.++|++|+ +.+++.+||.+|+.+.+.. +... . .-.....+|+|| |||+|| +.+|++
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~--- 275 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA--- 275 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc---
Confidence 13568999995 5667788999998875532 1110 0 112246799999 999999 889988
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+|||+.+...+.++++++.+ + |. ||++++|+.. ..+||++++|.+|+++..|++.+...
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHccC
Confidence 999999999999999999976 3 64 8888777764 46799999999999999998877543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=194.63 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 221 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998874 57777666 43 2 8999
Q ss_pred EEEEeCCeEEEEeCchhh
Q 005423 292 ICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 292 v~vL~~G~iv~~G~~~~~ 309 (697)
+++|++|+++..|+++++
T Consensus 337 i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEETTEEEECCCTTTS
T ss_pred EEEEECCEEEecCCHHHH
Confidence 999999999999998875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-22 Score=208.23 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=91.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc--
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-- 213 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~-- 213 (697)
.++|+||||||||||+|+|+|+.++.. |+|.++|++... ..+.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 479999999999999999999988875 999999986532 2357999999999999999999987764321110
Q ss_pred ----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 214 ----------FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 214 ----------~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
..+....+||||||||++|||+++. ++++||||.|||+.. .+.++++.+. .++|+++|..
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTG
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecc
Confidence 1122346899999999999999876 999999999999887 5666777665 8888888763
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-20 Score=209.39 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 220 NGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 220 ~~L-SGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++. +...||++++|+
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 356 999999999999999999 99999999999999999999999999987 899999888853 446799999996
Q ss_pred CC
Q 005423 297 NG 298 (697)
Q Consensus 297 ~G 298 (697)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 55
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-23 Score=205.69 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=109.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCccEEEEcCccccCCCCCHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
..+++| ..+++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|++.+++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 456777 68889999999999999999999999999862 223322223221 112356899999987777666666
Q ss_pred HHHHH----H--H-cCCCcc-cc---ccC------CCCCHHHHHHHHHHH---HHhhCCCEEEEeCCCCCC----CHHHH
Q 005423 202 YLYYS----A--L-LQLPGF-FC---QRK------NGLPCGERRRVRIAR---ELVMRPHVLFIDEPLYHL----DSVSA 257 (697)
Q Consensus 202 ~l~~~----~--~-l~l~~~-~~---~~~------~~LSGGqrqRv~IA~---aL~~~P~iLlLDEPTsgL----D~~~~ 257 (697)
++... . . .+.+.. .. ... -++.|.+.++-..+. +|+.+|++++|||||+|+ |+..+
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~ 163 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQ 163 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHH
Confidence 54210 0 0 000000 00 000 235566655555555 788999999999999998 78899
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 258 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 258 ~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.++.+.++++++ .|.|+|+++|+ ..++.++||+|++|.
T Consensus 164 ~~l~~~l~~l~~~~g~tvi~vtHd-l~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 164 RRLDTARIELAAQGDFDKVVVNRR-LESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHGGGGSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhccCcEEEECCC-HHHHHHHHHHHHHhc
Confidence 999999999984 58999997665 578999999999985
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=190.52 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=71.3
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 217 QRKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 217 ~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
+.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 345789999999 67778888889999999999999999999999999999988889999988874 5778999
Q ss_pred EEEEEe--CCe
Q 005423 291 RICLLS--NGN 299 (697)
Q Consensus 291 ~v~vL~--~G~ 299 (697)
++++|+ +|.
T Consensus 322 ~~~~l~~~~g~ 332 (339)
T 3qkt_A 322 HVIRISLENGS 332 (339)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCc
Confidence 999995 454
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-22 Score=203.60 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=100.6
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------CCCccEEEEcCccccCCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------MPYGSYGFVERETTLIGSL 197 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------~~~~~~~yv~Q~~~l~~~l 197 (697)
.-|+|||+++++|++++|+||||||||||+++|+|+. | |+|.+ |.+.. ...+.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4689999999999999999999999999999999987 3 67888 65421 1235688999887655432
Q ss_pred CH-HHHHH---------------HHHHcCCCccccccCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCCCCCHHH
Q 005423 198 TV-REYLY---------------YSALLQLPGFFCQRKNGLPCGERRRVRI-----ARELVMRPHVLFIDEPLYHLDSVS 256 (697)
Q Consensus 198 TV-~e~l~---------------~~~~l~l~~~~~~~~~~LSGGqrqRv~I-----A~aL~~~P~iLlLDEPTsgLD~~~ 256 (697)
+. .+++. ....+..... ......||||||||++| +++|+.+|++++|||||+++|..+
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~-~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~ 162 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI-CLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTEN 162 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCE-EEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCC
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCc-EEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCC
Confidence 10 00000 0000111110 01125789999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 257 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 257 ~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
...|.+.|+++.++ .| + .| ...||.|+++++
T Consensus 163 ~~~i~~~l~~~~~~-~~--~-~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 163 QEQIQKRMEQLNIE-LH--E-AN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHHHHH-HH--H-HT------TSCCSEEEECSS
T ss_pred HHHHHHHHHHHHHH-HH--h-hc------ccCCCEEEECCC
Confidence 99999999887643 23 1 23 145777776653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=206.51 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=114.8
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCcccc--C-----CCCCHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL--I-----GSLTVREY 202 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l--~-----~~lTV~e~ 202 (697)
++.+++|++++|+||||||||||+++++|..++. |+ +.+.+++|++.. . -...+.+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~~~l~~~~~~~g~~~~~~ 338 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESRAQLLRNAYSWGMDFEEM 338 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCHHHHHHHHHTTSCCHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCHHHHHHHHHHcCCCHHHH
Confidence 5689999999999999999999999999987664 43 012233333210 0 01223221
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCEEEEE
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SALLMMVTLKKLASTGCTLLFT 277 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~-----~~~~i~~~L~~l~~~g~tvi~t 277 (697)
. ..++....+..+..|||||+||+++|+++..+|++|++| ||+|||.. .+..+.++++.+++.|.|||++
T Consensus 339 ~----~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 339 E----RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp H----HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred H----hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 122223345667889999999999999999999999999 99999999 9999999999999899999999
Q ss_pred EecCh---------HHHHhccCEEEEEeCCe
Q 005423 278 INQSS---------TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 278 ih~~~---------~~i~~~~D~v~vL~~G~ 299 (697)
+|+.. ..+..+||+|++|++|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99861 45678999999999887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-20 Score=191.73 Aligned_cols=170 Identities=16% Similarity=0.084 Sum_probs=113.1
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCccEEEEcCccccCCCCCH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (697)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++..+.+...+ ++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hh
Confidence 468999999999999999999999999999999999987653 6 66543322111 01122222222211 11
Q ss_pred HHHHHH------------HHHcC-CCccccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-HHHH
Q 005423 200 REYLYY------------SALLQ-LPGFFCQRKNGLPCGE-RRRVRIARELVMRPHVLFIDEPLY---H---LDS-VSAL 258 (697)
Q Consensus 200 ~e~l~~------------~~~l~-l~~~~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTs---g---LD~-~~~~ 258 (697)
.+++.. ...+. .+-.....+..+|.+| +||+. |+++..+|++||+||||+ + +|. ....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~ 173 (296)
T 1cr0_A 95 SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMID 173 (296)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHH
Confidence 112211 11111 1111223346789999 66666 999999999999999999 5 555 6778
Q ss_pred HHHHHHHHHHH-cCCEEEEEEecC-hH--------------------HHHhccCEEEEEeCCeE
Q 005423 259 LMMVTLKKLAS-TGCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 300 (697)
Q Consensus 259 ~i~~~L~~l~~-~g~tvi~tih~~-~~--------------------~i~~~~D~v~vL~~G~i 300 (697)
++++.|+++++ .|+|||+++|.. .. .+.++||+|++|++|+.
T Consensus 174 ~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 174 NLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 89999999985 499999988885 13 67789999999998874
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-19 Score=211.94 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=114.9
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCccEEEEcCcccc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (697)
.+.+++|+++.+++|++++|+||||||||||||++ .|..-|.. +.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---ccc-------------chHH---HHH
Confidence 35789999999999999999999999999999999 55433321 110 1111 112
Q ss_pred CCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-
Q 005423 194 IGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAS- 269 (697)
Q Consensus 194 ~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~- 269 (697)
+..+...+ ....++|+|+++++.+|++| +.+|+++||||||+|||+.....+ ..+++.+++
T Consensus 709 ~~~ig~~d---------------~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~ 773 (934)
T 3thx_A 709 LARVGAGD---------------SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK 773 (934)
T ss_dssp EEECC------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCchh---------------hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 21111111 22357899999999999998 999999999999999999999888 677788886
Q ss_pred cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 270 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 270 ~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.|.++|+++|+. ++.+++|++..+.+|++...++.+++.
T Consensus 774 ~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 774 IGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp TCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence 489999988874 567899999999999999999887754
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-20 Score=222.86 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=118.7
Q ss_pred eEEEEe-----EEEEEecccccCcceeeeeeeEEcC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005423 105 SVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (697)
Q Consensus 105 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (697)
.+.++| |++.+. ..+.+++|+++.+++ |++++|+||||||||||||+| |++++-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 589999 887763 235799999999987 999999999999999999999 986531
Q ss_pred CCEeCCCCCccEE-EEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005423 173 NGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH 251 (697)
Q Consensus 173 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 251 (697)
.++| ||||+.. .+||.|++. ..++..+........+|+|++ ++++|++++.+|+++||||||+|
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~--~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~G 880 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVF--TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRG 880 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEE--EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTT
T ss_pred ---------hheeEEeccCcC---CCCHHHHHH--HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCC
Confidence 1234 7777653 334444431 112222222233456677666 49999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEE--EEeCch
Q 005423 252 LDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL--FFGETL 307 (697)
Q Consensus 252 LD~~~~-~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv--~~G~~~ 307 (697)
+|+... ..+.++|++++++ |.++|+++|+. ..+..++|++.++ +|+++ +.|+++
T Consensus 881 td~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 881 TATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC------
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCcc
Confidence 999884 5578999999876 89999988775 5677789999887 58887 455543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-19 Score=180.81 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=106.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CC--CceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+-+++||+++|+||||||||||+++|+|...+ +. ...|.|++++... ...+.++++.|+..+.+. |+.||+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 56889999999999999999999999995433 11 1225788877542 112356677776665544 666664321
Q ss_pred HHcCCCccccccCCCCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCG-ERRRVRIARELVM-------RPHVLFIDEPLYHLDSV-------S-----ALLMMVTLKK 266 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGG-qrqRv~IA~aL~~-------~P~iLlLDEPTsgLD~~-------~-----~~~i~~~L~~ 266 (697)
...+++ +++++..+++++. +|+++++||||++||+. . ..++++.|++
T Consensus 98 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~ 164 (231)
T 4a74_A 98 -------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 164 (231)
T ss_dssp -------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 123444 4445777777777 99999999999999984 2 2378888888
Q ss_pred HHH-cCCEEEEEEecCh---HHHHhccCEEEEEeCCe
Q 005423 267 LAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 267 l~~-~g~tvi~tih~~~---~~i~~~~D~v~vL~~G~ 299 (697)
+++ .|.|||+++|... ..+...+|++++|++|+
T Consensus 165 ~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 165 LANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 874 5999999888432 24778899999998754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-19 Score=209.61 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=89.3
Q ss_pred HcCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 208 LLQLPGF-FCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 208 ~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
.+++... .++...+|||||||||+|||+|+.+|+ +|||||||+|||+.....++++|++++++|.|||+++|+. ..
T Consensus 450 ~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~-~~ 528 (916)
T 3pih_A 450 DVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE-EV 528 (916)
T ss_dssp TTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH-HH
T ss_pred HcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH
Confidence 3455432 467789999999999999999999887 9999999999999999999999999998899999987764 44
Q ss_pred HHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 285 VFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 285 i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
+ ..||+|++| ++|++++.|+++++.+
T Consensus 529 ~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 529 I-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp H-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred H-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 5 559999999 8999999999998764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-21 Score=204.58 Aligned_cols=183 Identities=13% Similarity=0.066 Sum_probs=133.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-------C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------E 178 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-------~ 178 (697)
++.+++++.+.. ..++|+++ +.+.+||+++|+||||||||||+++|+|+.+++. |.|.+.|++. .
T Consensus 46 i~~~~l~~~~~t----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~---g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 46 LLRQVIDQPFIL----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI---IVLALIGERGREVNEFLA 117 (347)
T ss_dssp TTCCCCCSEECC----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE---EEEEEESCCHHHHHHHHT
T ss_pred eeecccceecCC----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE---EEEEEecccHHHHHHHHH
Confidence 566777777742 35799999 9999999999999999999999999999998864 9999988641 1
Q ss_pred C-----CCccEEEEcCcccc-CCCCCHHHHHHH-HHHcCCCc-c---ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 179 M-----PYGSYGFVERETTL-IGSLTVREYLYY-SALLQLPG-F---FCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 179 ~-----~~~~~~yv~Q~~~l-~~~lTV~e~l~~-~~~l~l~~-~---~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
. ..+.+.++.|.+.- ....++.++... +...+-.+ . .-+....||+|| |||++| +.+|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~----- 188 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV----- 188 (347)
T ss_dssp TSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred hhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-----
Confidence 1 12346777765321 111122222111 11111100 0 013457899999 899999 688887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+.....+.++++++.+ +|. ||++++|+.. ..+||++++|.+|+++..|+..+.
T Consensus 189 -t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999974 476 7888777654 467999999999999999988765
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-21 Score=204.52 Aligned_cols=106 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~ 212 (697)
+++|+++||+||||||||||+++|+|++++.. |. ..+++|+|++.+++. |++||+.+....+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence 78999999999999999999999999987742 32 458999999999887 999987542111111
Q ss_pred -----------------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 213 -----------------GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 213 -----------------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
+..+.....|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 151 ~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 ESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 111234468999999999999999999999999999999986
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-19 Score=184.37 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=98.4
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
++|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++.... ...+++.|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 4899999 8999999999999999999999999998764 1399999887643211 122333332
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.+++. ... -|++||++|..+|++|++|||| |+.+...++ +. ++.|.+|++++|...
T Consensus 79 -----~~gl~------~~~------l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 79 -----EVGED------TKS------FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT 134 (261)
T ss_dssp -----EBTTT------BSC------HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS
T ss_pred -----HhCCC------HHH------HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch
Confidence 01111 112 2899999999999999999999 988866544 33 457999999998864
Q ss_pred HHHHhccCEEEEEeC
Q 005423 283 TEVFGLFDRICLLSN 297 (697)
Q Consensus 283 ~~i~~~~D~v~vL~~ 297 (697)
+...+||+++|..
T Consensus 135 --~~~~~dri~~l~~ 147 (261)
T 2eyu_A 135 --AIDTIHRIVDIFP 147 (261)
T ss_dssp --HHHHHHHHHHTSC
T ss_pred --HHHHHHHHhhhcC
Confidence 5678999888753
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=160.09 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=73.9
Q ss_pred cccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 216 CQRKNGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA------~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
++.+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456689999999999876 899999999999999999999999999999999987799999988886 467899
Q ss_pred CEEEEE--eCCeE
Q 005423 290 DRICLL--SNGNT 300 (697)
Q Consensus 290 D~v~vL--~~G~i 300 (697)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 46643
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-20 Score=188.04 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=100.9
Q ss_pred cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHH
Q 005423 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (697)
+.+.+|+|+|+++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 3457999999999999999999999999999999999975 323333 1235689999985 67788999
Q ss_pred HHHHHHHHc-CC--C----------------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 201 EYLYYSALL-QL--P----------------GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 201 e~l~~~~~l-~l--~----------------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
|++.+.... .. + .........+|+||+||+++ ++++.+|+++|+|||...+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~------ 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE------ 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH------
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH------
Confidence 988654211 00 0 11123447899999999988 5888899999999998888864
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+.++ .+.+|++++|........+++++ ++|+ +.+++.+.
T Consensus 150 --l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 150 --IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp --HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred --HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2222 37788887776443333344444 5564 45555543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-19 Score=202.65 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=119.4
Q ss_pred Ccceeeeeee-EEcCCcEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccC
Q 005423 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (697)
Q Consensus 122 ~~~iL~~vs~-~v~~Ge~~aIiG~sGsGKSTLl~~--L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (697)
..++|++|++ .+++||+++|+||||||||||+++ ++|+.+|+. |.|+++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4579999999 999999999999999999999999 789988765 999999976311 124578998875421
Q ss_pred CCCCHHHHHHHHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQLPG--FFCQRKNGLPCGERRRVRIARELV-MRPHVLFIDEPLY-----HLDSVSALLMMVTLKK 266 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~-~~P~iLlLDEPTs-----gLD~~~~~~i~~~L~~ 266 (697)
+. +.+ ..... ...+....+.-++ +.-.+..+|. .+|+++++||||+ +||+..+.++.+++++
T Consensus 101 ~~------l~~---~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~ 170 (525)
T 1tf7_A 101 GK------LFI---LDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVAR 170 (525)
T ss_dssp TS------EEE---EECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHH
T ss_pred Cc------EEE---EecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 000 00000 0000011222233 4455566663 6899999999998 4699999999999999
Q ss_pred HHHcCCEEEEEEecChHH--------HHhccCEEEEEeCCe
Q 005423 267 LASTGCTLLFTINQSSTE--------VFGLFDRICLLSNGN 299 (697)
Q Consensus 267 l~~~g~tvi~tih~~~~~--------i~~~~D~v~vL~~G~ 299 (697)
+++.|+|||+++|+.... +..+||+|++|++|+
T Consensus 171 l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 171 LKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 998899999999987532 345699999999843
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-18 Score=201.79 Aligned_cols=148 Identities=20% Similarity=0.152 Sum_probs=108.2
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (697)
.+.+++|+++. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHH
Confidence 35789999998 99999999999999999999999853 332 5432 112245777766 56677888
Q ss_pred HHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCEE
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEP---LYHLDSVSA-LLMMVTLKKLASTGCTL 274 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---TsgLD~~~~-~~i~~~L~~l~~~g~tv 274 (697)
|++.. ++|+|+++++.+|++| +.+|+++||||| |++||..+. ..+++.|++ .|.|+
T Consensus 630 d~l~~---------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~v 691 (765)
T 1ewq_A 630 DDLAG---------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYT 691 (765)
T ss_dssp --------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEE
T ss_pred HHHHh---------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEE
Confidence 87642 5799999999999999 999999999999 999998875 578887766 58899
Q ss_pred EEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 275 i~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|+++|+. +..+++ .--+.++++......
T Consensus 692 l~~TH~~--~l~~~~--~~~v~n~~~~~~~~~ 719 (765)
T 1ewq_A 692 LFATHYF--ELTALG--LPRLKNLHVAAREEA 719 (765)
T ss_dssp EEECCCH--HHHTCC--CTTEEEEEEEEECCS
T ss_pred EEEeCCH--HHHHhh--hhcceEEEEEEEEcC
Confidence 9988874 344555 223445555554443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=198.28 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=105.5
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+.+++||++.+++|++++|+||||||||||||++++..-.. ..| .........++ .-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~~vpa~~~~i~---~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------SYVPAEEATIG---IVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------CCBSSSEEEEE---CCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------ccccchhhhhh---HHHHHHHhCChHH
Confidence 467999999999999999999999999999999998642110 001 00000001122 2233444444444
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHH-cCCEEEEEEe
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAS-TGCTLLFTIN 279 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~-~g~tvi~tih 279 (697)
++. ...+.+|+|++|++.|+++ +.+|+++||||||+|||+.....+. .+++.+++ .|.|+|+++|
T Consensus 728 ~l~------------~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH 794 (918)
T 3thx_B 728 NIY------------KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH 794 (918)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHH------------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 432 3346789999999999999 8999999999999999999999997 78888875 6899999888
Q ss_pred cChHHHHhccCEEEE-EeCCeEEE
Q 005423 280 QSSTEVFGLFDRICL-LSNGNTLF 302 (697)
Q Consensus 280 ~~~~~i~~~~D~v~v-L~~G~iv~ 302 (697)
+. ++.+++|+.-- +.++++.+
T Consensus 795 ~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 795 YP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp CG--GGGGHHHHTTTTEEEEEEEE
T ss_pred cH--HHHHHHhhcccceEEEEEEE
Confidence 75 45567765431 34444433
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=194.17 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHcCCCc----------------------------cccccCCCCCHHHHHHHHHHHHHhhCC--CEEEE
Q 005423 196 SLTVREYLYYSALLQLPG----------------------------FFCQRKNGLPCGERRRVRIARELVMRP--HVLFI 245 (697)
Q Consensus 196 ~lTV~e~l~~~~~l~l~~----------------------------~~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlL 245 (697)
.+||.|++.|...+.++. ..++...+|||||||||+||++|..+| ++|||
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llIL 530 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVL 530 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 578888888865544332 135566899999999999999999985 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
||||+|||+.....++++|++|++.|.|||++.|+. .++ ..||+|++| ++|++++.|+++++..
T Consensus 531 DEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 531 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp ECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred eCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 999999999999999999999998999999977765 444 579999999 7999999999988753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-18 Score=181.07 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=106.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccccCCCCCHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
+|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... +..+++++|+..+.+..+|+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999998875 9999999875321 13589999999888888999999
Q ss_pred HHHHHcCC-------CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEE
Q 005423 204 YYSALLQL-------PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLL 275 (697)
Q Consensus 204 ~~~~~l~l-------~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi 275 (697)
.+....+. .+..+...+-++..++||++|||+|+.+|+.++| .||+.+..++++.++++.+. |.|+|
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGV 252 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEE
T ss_pred HHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEE
Confidence 87643221 1111122223456679999999999999995444 45555556677778888754 88999
Q ss_pred EEEecCh
Q 005423 276 FTINQSS 282 (697)
Q Consensus 276 ~tih~~~ 282 (697)
+++|.+.
T Consensus 253 ivTh~d~ 259 (304)
T 1rj9_A 253 IVTKLDG 259 (304)
T ss_dssp EEECTTS
T ss_pred EEECCcc
Confidence 9888753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-17 Score=163.02 Aligned_cols=166 Identities=13% Similarity=-0.017 Sum_probs=109.3
Q ss_pred cceeeeeee-EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCccccCCC
Q 005423 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGS 196 (697)
Q Consensus 123 ~~iL~~vs~-~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~ 196 (697)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+.... ...+++..|+.... .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 456888885 899999999999999999999999998765433 6666644321100 00112222211000 0
Q ss_pred CCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cC
Q 005423 197 LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHL--DSVSALLMMVTLKKLAS-TG 271 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgL--D~~~~~~i~~~L~~l~~-~g 271 (697)
+.+.+... ...+ +. ......|.+|.++...+.....+|+ +|++||||+++ |+....++++.|+++++ .|
T Consensus 85 ~~~~~~~~--~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 85 LIIIDALM--KEKE-DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp EEEEECCC-------CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred EEEEeccc--cccC-ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 00000000 0000 00 0112449999999888888888999 99999999888 99999999999999974 58
Q ss_pred CEEEEEEecCh-------HHHHhccCEEEEEeCC
Q 005423 272 CTLLFTINQSS-------TEVFGLFDRICLLSNG 298 (697)
Q Consensus 272 ~tvi~tih~~~-------~~i~~~~D~v~vL~~G 298 (697)
.|||+++|... ..+.++||+|++|++.
T Consensus 159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999887762 3478899999999754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-18 Score=199.39 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=112.6
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+.+++|+++. ++|++++|+||||||||||||+|+|+..... .| .........++++.| ++..+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35799999999 9999999999999999999999999742210 12 111111234555554 566678888
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEe
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTIN 279 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~tih 279 (697)
++... .+.+|+|++ +++.+..++.+|+++|||||++|+|+.....+ .++++.+++ .|.++|+++|
T Consensus 662 ~l~~~------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH 728 (800)
T 1wb9_A 662 DLASG------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 728 (800)
T ss_dssp --------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHhh------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeC
Confidence 77532 134676665 45555567899999999999999998877775 788899987 4999999888
Q ss_pred cChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 280 QSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 280 ~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+. ++.+++|++..+.+|++.+....+++
T Consensus 729 ~~--el~~l~d~~~~v~n~~~~~~~~~~~l 756 (800)
T 1wb9_A 729 YF--ELTQLPEKMEGVANVHLDALEHGDTI 756 (800)
T ss_dssp CG--GGGGHHHHSTTEEEEEEEEEEETTEE
T ss_pred CH--HHHHHhhhhhceEEEEEEEEEcCCcE
Confidence 85 34578999888888988776654443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-18 Score=186.11 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=112.0
Q ss_pred ceeeee-eeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCccEEEEcCccccCCCCC
Q 005423 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (697)
Q Consensus 124 ~iL~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (697)
..|+.+ .+.+++|++++|+||||||||||++.|++.. +++. ...|+ |++++.... ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 346665 5889999999999999999999999999987 4321 11367 899886531 23467788887665543 5
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH------------HHH
Q 005423 199 VREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVS------------ALL 259 (697)
Q Consensus 199 V~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~-------~~P~iLlLDEPTsgLD~~~------------~~~ 259 (697)
+.+|+.+.. ..-|++|+|++.++++++ .+|++|++||||++||+.. ..+
T Consensus 196 v~~ni~~~~------------~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~ 263 (349)
T 1pzn_A 196 VLKHIYVAR------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 263 (349)
T ss_dssp HGGGEEEEE------------CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHH
T ss_pred HhhCEEEEe------------cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHH
Confidence 555543210 012678999999999999 6899999999999999852 456
Q ss_pred HHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 260 MMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 260 i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+++.|+++++ .|+|||++.|... .....++.......|+++.++.
T Consensus 264 ~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 264 HLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 7777788775 5899999777643 4444455666677777665544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-18 Score=201.10 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=116.7
Q ss_pred eEEEEeEEEEEecccccCcceeeee----------eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~-~~~~~G~I~i~ 173 (697)
.++++||+..+..+ .+++|+.+ ++.++. +||+|||||||||||++|+|+..| ++ |.|.++
T Consensus 10 ~i~~~~l~~~~~~~---~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~s---G~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEK---VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGS---GIVTRC 80 (608)
T ss_dssp ----------CHHH---HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHH---HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCC---CeEEEc
Confidence 46788888887532 12233322 244433 999999999999999999999866 44 999999
Q ss_pred CEeC--------CCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
|.++ ...++.++|++|+..+++.+||+|++.+....... ...++| ++++.++.+...+|+++++
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~-----~~~~~s---~~~i~l~i~~~~~p~LlLl 152 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG-----EGMGIS---HELITLEISSRDVPDLTLI 152 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC-----SSSCCC---SCCEEEEEEESSSCCEEEE
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC-----Cccccc---hHHHHHHhcCCCCCceeEe
Confidence 9763 12345789999999999999999999886432100 111222 2333444444568999999
Q ss_pred eCC------CCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEecCh------HHHHhc-----cCEEEEEeCCeEEEEeCc
Q 005423 246 DEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEVFGL-----FDRICLLSNGNTLFFGET 306 (697)
Q Consensus 246 DEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi~tih~~~------~~i~~~-----~D~v~vL~~G~iv~~G~~ 306 (697)
||| |+|||+..+.++.++++++.++ +.++++++|... ..+.+. ...|+|+.++..+..|+.
T Consensus 153 DePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 153 DLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 232 (608)
T ss_dssp ECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSST
T ss_pred eCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccH
Confidence 999 9999999999999999997543 445555554432 111111 356889999998888877
Q ss_pred hhhHHhhh
Q 005423 307 LACLQHFS 314 (697)
Q Consensus 307 ~~~~~~f~ 314 (697)
+++.+.+.
T Consensus 233 ~~~~~~l~ 240 (608)
T 3szr_A 233 DKVVDVVR 240 (608)
T ss_dssp TCCCCCC-
T ss_pred HHHHHHHh
Confidence 66555443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=185.72 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=88.8
Q ss_pred cCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHH
Q 005423 209 LQLPGF-FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 209 l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i 285 (697)
+++... .++....|||||||||+||++|..+| ++|||||||+|||+.....++++|++|++.|.|||++.|+. . +
T Consensus 366 vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~ 443 (842)
T 2vf7_A 366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-V 443 (842)
T ss_dssp TTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-H
T ss_pred CCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-H
Confidence 445432 56777899999999999999999999 59999999999999999999999999998899999977765 3 5
Q ss_pred HhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 286 FGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 286 ~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
.+.||+|++| ++|++++.|+++++.+
T Consensus 444 l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 444 IRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 5789999999 7999999999988754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-18 Score=184.00 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=80.8
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCccEEE
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYGF 186 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~-~~~~~~~~G~I~i~G~~~~~--~~~~~~y 186 (697)
||++.+. .+.+++++++.+ +|+|+||+|||||++.|+|. ..+.. | |.++|.+... ....+++
T Consensus 3 ~l~~~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 3 NLPNQVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEE
T ss_pred CCcceEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcceEeeEEE
Confidence 5666652 457999999998 99999999999999999997 66554 7 8777765322 1245788
Q ss_pred EcCccccCCCCCHHHHHHHHHHcC----CCccc-------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC-CCH
Q 005423 187 VERETTLIGSLTVREYLYYSALLQ----LPGFF-------CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH-LDS 254 (697)
Q Consensus 187 v~Q~~~l~~~lTV~e~l~~~~~l~----l~~~~-------~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg-LD~ 254 (697)
++|++.....+|+.|+..++.... ..... ++..+++|||||||+.+||+++ +|++||||++ ||+
T Consensus 68 ~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 68 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp EEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred EecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 988877766778777766543211 01111 1455789999999999999885 9999999985 999
Q ss_pred HHHHHHHHHHHHHHHc-CCEEEEEEecC
Q 005423 255 VSALLMMVTLKKLAST-GCTLLFTINQS 281 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~-g~tvi~tih~~ 281 (697)
... +.++++.++ +.++|++.|+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 873 666776643 56666655553
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-19 Score=177.46 Aligned_cols=150 Identities=21% Similarity=0.194 Sum_probs=101.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~ 212 (697)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.+||++|+. ... ++++. .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~~~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVGLE 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccccc
Confidence 78999999999999999999999987 54 8 888886542 2346789999874 111 11110 01111
Q ss_pred -------ccccccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCEEEE---
Q 005423 213 -------GFFCQRKNGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALLMMVTLKKLASTGCTLLF--- 276 (697)
Q Consensus 213 -------~~~~~~~~~LSGGqrqRv-~IA~---aL~~~P~iLlLDE--PTsgLD~~~~~~i~~~L~~l~~~g~tvi~--- 276 (697)
....++...+|+|||+++ ++++ |++.+|+|||+|| |+..+|..... .|+++.+...++|+
T Consensus 68 ~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~----~l~~~l~~~~~~ilgti 143 (189)
T 2i3b_A 68 PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ----AVRQTLSTPGTIILGTI 143 (189)
T ss_dssp CCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH----HHHHHHHCSSCCEEEEC
T ss_pred CCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH----HHHHHHhCCCcEEEEEe
Confidence 012233457999999998 4454 6899999999999 89889987544 44444444545553
Q ss_pred EEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 277 TINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 277 tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+++|..+ ..+.|+|..+.+|+++...
T Consensus 144 ~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 144 PVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred ecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 3324332 3567888888888987644
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-17 Score=174.16 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=91.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+.... ....+++.|........+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~--------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE--------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---------
Confidence 567899999999999999999999999987642 26665544333322 123345556543333333322
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
+||++|..+|++|++|||| |..+ .+.+.++++.|.+|++|+|..+ .+ +.+|
T Consensus 188 --------------------~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~d 238 (356)
T 3jvv_A 188 --------------------ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTID 238 (356)
T ss_dssp --------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHH
T ss_pred --------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHH
Confidence 9999999999999999999 6555 4444555778999999888875 34 7899
Q ss_pred EEEEEeCC
Q 005423 291 RICLLSNG 298 (697)
Q Consensus 291 ~v~vL~~G 298 (697)
|++.|..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99988654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-18 Score=173.59 Aligned_cols=129 Identities=21% Similarity=0.154 Sum_probs=100.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccC--CCCCHHHHHHHH----
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYS---- 206 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~~~---- 206 (697)
.++|++++|+||||||||||+++|+|++++ .++|++|++.++ ..+|+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence 358999999999999999999999998642 478888888766 456787765431
Q ss_pred ------------HHcCCCccccccCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHH
Q 005423 207 ------------ALLQLPGFFCQRKNGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LDSVSALLMMVT 263 (697)
Q Consensus 207 ------------~~l~l~~~~~~~~~~LSGGq----rqRv~IA~aL~~~P~iLlLDEPTsg-------LD~~~~~~i~~~ 263 (697)
..+++.+....+...+|+|| +||+++|++++.+|.++++||||++ ||+....++.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 11122233344556789996 4789999999999999999999999 999999999999
Q ss_pred HHHH-HHcCCEEEEEEecC
Q 005423 264 LKKL-ASTGCTLLFTINQS 281 (697)
Q Consensus 264 L~~l-~~~g~tvi~tih~~ 281 (697)
+++. .+.|.|++.++|+.
T Consensus 143 l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 9886 46688888777763
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=158.52 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=94.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-H------
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY-Y------ 205 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~------ 205 (697)
+++|++++|+||||||||||++.|++.... |++. .|.+.. ....+.|+..++..- .+.+.+. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~~~g~~~~~ 96 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLHALGAHLSA 96 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHHHHHTTSCH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHHHHHhhcCh
Confidence 669999999999999999999999986542 5442 344321 124577776654321 1111111 1
Q ss_pred ------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHH-HcCCE
Q 005423 206 ------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVS---ALLMMVTLKKLA-STGCT 273 (697)
Q Consensus 206 ------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs--gLD~~~---~~~i~~~L~~l~-~~g~t 273 (697)
...+.+....++.+..||+||+|++ ++++.+|+++++||||+ ++|... ..++++.|++++ +.|+|
T Consensus 97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 1122233334456788999998875 68889999999999999 999744 488899999997 56999
Q ss_pred EEEEEecC
Q 005423 274 LLFTINQS 281 (697)
Q Consensus 274 vi~tih~~ 281 (697)
||+++|..
T Consensus 174 vi~i~H~~ 181 (279)
T 1nlf_A 174 IVFLHHAS 181 (279)
T ss_dssp EEEEEEC-
T ss_pred EEEEecCC
Confidence 99977765
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-15 Score=145.55 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=98.0
Q ss_pred ceeeeee-eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs-~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
+.|+++. +-+++|++++|+||||||||||++.|++ +.+. +.++++..... ....+.-..+.. .....+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~---~v~~i~~~~~~-~~~~~~~~~~~~----~~~~~~~ 76 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGK---KVAYVDTEGGF-SPERLVQMAETR----GLNPEEA 76 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCS---EEEEEESSCCC-CHHHHHHHHHTT----TCCHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCC---cEEEEECCCCC-CHHHHHHHHHhc----CCChHHH
Confidence 4566665 4788999999999999999999999999 3321 44444432200 000000000000 0011110
Q ss_pred HHHHHHcCCCccccccCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHH--------HHHHHHHHHHHHHH-c
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYHLDSV--------SALLMMVTLKKLAS-T 270 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGq--rqRv~IA~aL~~~-P~iLlLDEPTsgLD~~--------~~~~i~~~L~~l~~-~ 270 (697)
+ ..+ .....++++ +++++.+++++.+ |+++++||||+.+|.. ...++++.|+++++ .
T Consensus 77 ~---~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 77 L---SRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp H---HHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred h---hcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000 122344553 6788889999986 9999999999999973 23556777888875 4
Q ss_pred CCEEEEEEecCh------------HHHHhccCEEEEEeCC
Q 005423 271 GCTLLFTINQSS------------TEVFGLFDRICLLSNG 298 (697)
Q Consensus 271 g~tvi~tih~~~------------~~i~~~~D~v~vL~~G 298 (697)
|.|||+++|... ..+.+.||.+++|++.
T Consensus 146 ~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 889998777643 1567899999999754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-15 Score=149.94 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=93.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEE------CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFV------NG 174 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-----~~~~~~~G~I~i------~G 174 (697)
++++|+++.|. ..++++ +.+.+|+.++|+|+||||||||++.|+|.. .+. .|++.+ ++
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~~~~ 72 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFEVAD 72 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEET
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEEecC
Confidence 68899999884 246777 788999999999999999999999999987 433 254432 11
Q ss_pred -EeC-CCC---------------CccEEEEcCc-----------cccCCCCCHH--HHHHHHHHcCCCcc-ccccCCCCC
Q 005423 175 -AKS-EMP---------------YGSYGFVERE-----------TTLIGSLTVR--EYLYYSALLQLPGF-FCQRKNGLP 223 (697)
Q Consensus 175 -~~~-~~~---------------~~~~~yv~Q~-----------~~l~~~lTV~--e~l~~~~~l~l~~~-~~~~~~~LS 223 (697)
... +.+ .+.++++.|. +.-.+ .+-. +........+++.. ...+...+|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-CchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 110 000 0001111110 00011 1211 11222223344433 245566799
Q ss_pred HHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 005423 224 CGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 273 (697)
Q Consensus 224 GGqrqR-v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 273 (697)
+||||| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999 89999999999999999999999999999999999998866644
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=141.62 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 216 CQRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
.+....||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.++ .++|+++|++ .+.+.||+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~ 135 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADK 135 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCE
Confidence 35567899999999999999975 46999999999999999999999999998754 5666667774 46789999
Q ss_pred EEEEe--CCe
Q 005423 292 ICLLS--NGN 299 (697)
Q Consensus 292 v~vL~--~G~ 299 (697)
++.+. +|.
T Consensus 136 i~~v~~~~g~ 145 (173)
T 3kta_B 136 IIGVSMRDGV 145 (173)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCE
Confidence 98664 664
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-17 Score=178.16 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=94.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+.++||++.|. .+.+++++++.+ +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 478888887763 457999999998 99999999999999999998764321 1222222211 1112457
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHcCCCccc----cccCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHH
Q 005423 185 GFVERETTLIGSLTVREYLYYSALLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPH---VLFIDEPL-YHLDSVS 256 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~----~~~~~~LSGGqrqRv~IA~aL~~~P~---iLlLDEPT-sgLD~~~ 256 (697)
++++|++.++..+||.||+.+.......... ..-...++.+++||++|||+++.+|+ +|++|||| .+||+..
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 8899988887788888888765432100000 00012467788899999999999999 99999999 6999877
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 257 ALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 257 ~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
. +.++++.. +.++|+++|+-
T Consensus 158 ~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 158 I----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp H----HHHHHHTT-TSEEEEEEEST
T ss_pred H----HHHHHHhc-cCcEEEEEEcc
Confidence 3 44555554 67777777764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-18 Score=165.55 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=110.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC--C-
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL--P- 212 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l--~- 212 (697)
|++++|+||||||||||+++|++. . .|.+.++|.+.... ...++++|........++++++.+...... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999982 2 28899988653221 134566666544455688888876532210 0
Q ss_pred c-ccc--------ccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 005423 213 G-FFC--------QRKNGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275 (697)
Q Consensus 213 ~-~~~--------~~~~~L--SGGqrqRv~IA~------aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi 275 (697)
. ..+ +..+.+ |+|++|++.++. +|+.+|+...+|| +||+..... .+.++.+.+.+.++|
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 0 010 011234 888888888888 9999999888884 899988888 888888876678888
Q ss_pred EEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 276 ~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
.++|...+++.++||+|+ ++|+++..|+++-+
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 877762357888999999 99999999987653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-15 Score=162.11 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=100.8
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCccEEEEc-CccccCCCCCHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (697)
+++++++.+++|++++|+||||||||||+++|+|++++.. |.|.++|... .. .++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999865 9999998532 11 235688988 65432
Q ss_pred HHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~ 280 (697)
+++++..+|..|+.+|..+|+.+++||++. .++.+.|+.+.....|++.++|.
T Consensus 234 --------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 234 --------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHA 286 (361)
T ss_dssp -------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEEC
T ss_pred --------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECC
Confidence 112334566677777888999999999986 34566777776555677888888
Q ss_pred ChHHHHhccCEEEEEeCCe
Q 005423 281 SSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 281 ~~~~i~~~~D~v~vL~~G~ 299 (697)
.+ ....+||+..|..|.
T Consensus 287 ~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS--CELTFERLALMVLQN 303 (361)
T ss_dssp SS--HHHHHHHHHHHHTTS
T ss_pred CC--HHHHHHHHHHHHhcc
Confidence 64 567889988887653
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-15 Score=153.66 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=101.1
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCccEEEEcCccccCCCCCH----HHHHHHH
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTV----REYLYYS 206 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~e~l~~~ 206 (697)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+++++... ....++|++|++..|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45689999999999999999999999998863 356999998875432 23468999998776655554 2332211
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
.. ..+.| +++ +++++..++++||| ||+.++.++.+.+. ++.||++++|+. .++.
T Consensus 91 ------~~----~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~-~~l~ 144 (219)
T 1s96_A 91 ------GN----YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSK-IELD 144 (219)
T ss_dssp ------TE----EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSH-HHHH
T ss_pred ------hc----cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCH-HHHH
Confidence 00 01112 222 45677789999999 99999999999876 588898877765 3443
Q ss_pred hccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 287 GLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 287 ~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
+ |+ +.+| .++++++...+.
T Consensus 145 ~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 145 R---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp H---HH--HTTS----CSCHHHHHHHHH
T ss_pred H---HH--HHcC----CCCHHHHHHHHH
Confidence 3 43 6677 466777665554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-15 Score=162.01 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=95.2
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
.+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+... .+..+++|+|...
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEEB----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeeec----------
Confidence 3566665 78999999999999999999999999987641 3999777655432 2345778888521
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
++ .+..+ +.+|+++|..+|++|++|||+ |..+... .++. +..|.+|+.|+|...
T Consensus 192 -------g~------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 192 -------GE------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT 245 (372)
T ss_dssp -------TT------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS
T ss_pred -------CC------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch
Confidence 11 11233 469999999999999999999 7766443 3443 356889988777653
Q ss_pred HHHHhccCEEEEEe
Q 005423 283 TEVFGLFDRICLLS 296 (697)
Q Consensus 283 ~~i~~~~D~v~vL~ 296 (697)
+.+.+||++.|.
T Consensus 246 --~~~~~~rl~~l~ 257 (372)
T 2ewv_A 246 --AIDTIHRIVDIF 257 (372)
T ss_dssp --HHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhc
Confidence 667888877663
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-15 Score=148.27 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=91.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCccEEEEcCccccCCCCCHHHHHHHHHHc
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l 209 (697)
+++|++++|+||||||||||+++|+|+ ++. |.|.++|.+.. .....++|++|+.. +..+|.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~---g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGV---PKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSS---CEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCC---CeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 333 99999986531 11234577777654 356899998764321
Q ss_pred ----C----CCc---------cc--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 210 ----Q----LPG---------FF--CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 210 ----~----l~~---------~~--~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
+ +.. .. ......+|+|++||+.++|++..+|+++ +|+.....+.+.++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0 010 00 1223569999999999999999999887 6888777777777665433
Q ss_pred CCEEEE
Q 005423 271 GCTLLF 276 (697)
Q Consensus 271 g~tvi~ 276 (697)
+..+|.
T Consensus 151 ~~~~i~ 156 (191)
T 1zp6_A 151 EHHVLP 156 (191)
T ss_dssp GGGEEE
T ss_pred cccEEE
Confidence 333443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-16 Score=173.51 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=105.5
Q ss_pred eeeeeeeEEcC--CcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEEC----CEeCCCCC---ccEEEEcCccccC
Q 005423 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVN----GAKSEMPY---GSYGFVERETTLI 194 (697)
Q Consensus 125 iL~~vs~~v~~--Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-~~~G~I~i~----G~~~~~~~---~~~~yv~Q~~~l~ 194 (697)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++.. ...|+|.++ |.+..... ..+++++|+..++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 45679999999 99999999999999999999999988741 011666653 32221111 2355555543322
Q ss_pred CCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV-MRPHVLFIDE---PL------YHLDSVSALLMMVTL 264 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~-~~P~iLlLDE---PT------sgLD~~~~~~i~~~L 264 (697)
..|+.||+.+. . .+........+|+|++||..+++++. .+|++++||| |+ .++|...+..+.+.|
T Consensus 237 -~~t~~~nl~~~---~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 237 -AVRHSHKIAFI---D-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp -HHHHCSSEEEE---S-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred -HHhccCCEEEE---e-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 12333333211 0 11111223356778888888888875 5999999999 65 589999999999999
Q ss_pred HHHHH-cCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 265 KKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 265 ~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
+++.+ .|.+++++.| +. +..+++|++.+++
T Consensus 312 ~~l~~~~~~~ililde-~~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIES-PS-YLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHGGGCCCEEEEC-SS-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCC-CC-HHHHHHHHHHHHH
Confidence 99864 4788888654 43 4556676665553
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-13 Score=133.38 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=88.1
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEeCCCC------CccEEEEcCccccCCCCCHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHS--ARMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G--~~~~~--~~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~ 200 (697)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+++++...... .+.+++.+|+ +.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~ 90 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VL 90 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hh
Confidence 5678999999999999999999999999 45441 00137788876542100 0112222111 11
Q ss_pred HHHHHHHHcCCCccccccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHH
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV-------S-----ALLMMVTLK 265 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSGGqrqR-v~IA~aL~--~~P~iLlLDEPTsgLD~~-------~-----~~~i~~~L~ 265 (697)
+++ ......++.+... +.-+.+++ .+|+++++|||++.+|+. . ..++++.|+
T Consensus 91 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~ 157 (243)
T 1n0w_A 91 DNV-------------AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 157 (243)
T ss_dssp HTE-------------EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHH
T ss_pred hCe-------------EEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 111 0112345555433 33344444 489999999999999975 3 345667777
Q ss_pred HHHH-cCCEEEEEEecChHH------------------HHhccCEEEEEeCCe
Q 005423 266 KLAS-TGCTLLFTINQSSTE------------------VFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~-~g~tvi~tih~~~~~------------------i~~~~D~v~vL~~G~ 299 (697)
++++ .|.|||+++|..... +..+||.+++|++|+
T Consensus 158 ~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 158 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp HHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred HHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 7764 489999976643211 223899999998653
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=127.62 Aligned_cols=96 Identities=19% Similarity=0.350 Sum_probs=72.6
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+|+++ +|+.++|+||||+|||||+++|+|..++. | .+.+++.+.. . .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~~~~---------------~-~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAASMP---------------L-T----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETTTSC---------------C-C-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHHHhh---------------H-H-----
Confidence 355555 89999999999999999999999987652 5 4554442211 0 0
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEEec
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLFTINQ 280 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t-vi~tih~ 280 (697)
+++.+|++|++|||++ +|...+..+.+++.++.++|++ +|+++|.
T Consensus 79 ---------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ---------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ---------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ---------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356899999999998 6655588999999999888887 8887776
Q ss_pred ChH
Q 005423 281 SST 283 (697)
Q Consensus 281 ~~~ 283 (697)
+..
T Consensus 125 ~p~ 127 (149)
T 2kjq_A 125 TPQ 127 (149)
T ss_dssp CTT
T ss_pred CHH
Confidence 543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-14 Score=135.14 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=77.7
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
+.+.+|+.++|.||||+|||||+++|++...+.. |.. +.| .++.+.+......
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g~~-------------~~~----------~~~~~~~~~~~~~- 85 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---GIR-------------GYF----------FDTKDLIFRLKHL- 85 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---CCC-------------CCE----------EEHHHHHHHHHHH-
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---CCe-------------EEE----------EEHHHHHHHHHHH-
Confidence 3456799999999999999999999999875322 310 111 2333333221100
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
.... ... -....+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|+++|++..+
T Consensus 86 ----~~~~--~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 86 ----MDEG--KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp ----HHHT--CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred ----hcCc--hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 0000 000 1223456999999999996 9999999999999999888899999999987644
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=152.05 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=113.9
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCccEEEEcCccccC
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (697)
-+++|+.+++|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999988765 999998765421 124589999998888
Q ss_pred CCCCHHHHHHHHHHcCCCccc-ccc-----CCCCCHHHHHHHHHHHHHh-hCC-CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQLPGFF-CQR-----KNGLPCGERRRVRIARELV-MRP-HVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l~~~~-~~~-----~~~LSGGqrqRv~IA~aL~-~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
+.++|++++.+...-+..-.+ +.. ...+-..-+|++.+++++. ..| .+||..++|+|.|.. +.++.
T Consensus 360 p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~ 433 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKL 433 (503)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHH
Confidence 888999999987542211000 000 0112223357888888763 457 466666688886554 34555
Q ss_pred HHH-cCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCchhh
Q 005423 267 LAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLAC 309 (697)
Q Consensus 267 l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~~ 309 (697)
+.+ -|.|.++.+|-+. .....+.+-++. +..|.|.|..+.+
T Consensus 434 f~~~~~itgvIlTKLD~--takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 434 FHEAVGLTGITLTKLDG--TAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHHTCCSEEEEECGGG--CSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHhhcCCCEEEEEcCCC--cccccHHHHHHHHHCCCEEEEecCCCh
Confidence 553 4777777777543 222233222332 3456666665554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-16 Score=157.42 Aligned_cols=127 Identities=23% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHHHH--
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSAL-- 208 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-- 208 (697)
++++++|+||||||||||+++|+ |+..++. |+|.++|.+.... ...+.+++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~---G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS---GHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH---HHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecH---HHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9987653 8887776532111 1223445666667777788888765321
Q ss_pred ------c-CCCc------------------------------cccccCCCCCHHHHHHHHHHHHH-hhCCCEEEEe----
Q 005423 209 ------L-QLPG------------------------------FFCQRKNGLPCGERRRVRIAREL-VMRPHVLFID---- 246 (697)
Q Consensus 209 ------l-~l~~------------------------------~~~~~~~~LSGGqrqRv~IA~aL-~~~P~iLlLD---- 246 (697)
+ +.+. ...+....||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0 0110 00122345777 55 667 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTG 271 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g 271 (697)
|||++||..+...+.+.|+++.+++
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999987654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-15 Score=144.44 Aligned_cols=135 Identities=15% Similarity=0.086 Sum_probs=81.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C-------C-ccEE----EEcCccccCCCCCHHH--
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P-------Y-GSYG----FVERETTLIGSLTVRE-- 201 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~-------~-~~~~----yv~Q~~~l~~~lTV~e-- 201 (697)
++++|+|+||||||||+++|+|++++.+...|.|.++|.+... . + +.++ ++.|+..++-.-.-.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 5799999999999999999999988753345999999976321 1 1 2456 7888876651100011
Q ss_pred -HH-HHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHH
Q 005423 202 -YL-YYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL-------FIDEPLYH---LDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 202 -~l-~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL-------lLDEPTsg---LD~~~~~~i~~~L~~l~~ 269 (697)
.+ .+... .+++.-..-..+||||||||++|||+++.+|++. .-|.|..+ +|......+.+.+.+...
T Consensus 83 a~l~~~i~~-~l~g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 83 NDLDWIYER-YLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp TCHHHHHHH-HTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred hCHHHHHHh-hCCCCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 11 11111 0332211222359999999999999999999873 33555322 344456777777766666
Q ss_pred cCC
Q 005423 270 TGC 272 (697)
Q Consensus 270 ~g~ 272 (697)
+|.
T Consensus 162 ~~~ 164 (171)
T 2f1r_A 162 EGG 164 (171)
T ss_dssp C--
T ss_pred ccC
Confidence 654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=140.16 Aligned_cols=138 Identities=9% Similarity=-0.035 Sum_probs=97.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccccCCCCCHHHH
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... ...+.+++|+..+.|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999988765 9999999875321 1135699999999999999999
Q ss_pred HHHHHHcCCCcc-ccccCC-C-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEE
Q 005423 203 LYYSALLQLPGF-FCQRKN-G-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTI 278 (697)
Q Consensus 203 l~~~~~l~l~~~-~~~~~~-~-LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~ti 278 (697)
+.++...+.... .+.... . -..=.++.-.|++++..++.+++||.+|. .++++.++.+. +.+.|+|+++
T Consensus 204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEe
Confidence 988754221110 111100 0 01112233348899988888888885553 45666777776 4588888888
Q ss_pred ecC
Q 005423 279 NQS 281 (697)
Q Consensus 279 h~~ 281 (697)
|.+
T Consensus 277 KlD 279 (328)
T 3e70_C 277 KLD 279 (328)
T ss_dssp CGG
T ss_pred CcC
Confidence 866
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-14 Score=135.86 Aligned_cols=78 Identities=19% Similarity=0.092 Sum_probs=64.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
+.+++++|+++++|++++|+||||||||||+|+|+|++ |.. |+|.++|.+.........+++|+..++ .+||.|+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 46899999999999999999999999999999999998 654 999999975421111012789998888 8999999
Q ss_pred HHH
Q 005423 203 LYY 205 (697)
Q Consensus 203 l~~ 205 (697)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=140.88 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|+++|++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876678899988874 567889999999
Q ss_pred e
Q 005423 296 S 296 (697)
Q Consensus 296 ~ 296 (697)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-15 Score=156.24 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=90.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCC--------------------CccEEEE-
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMP--------------------YGSYGFV- 187 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~--------~~~~~~~G~I~i~G~~~~~~--------------------~~~~~yv- 187 (697)
++++|+|+||||||||+|.|+|.. .++ .|+|.++|.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 344 39999998764321 1235666
Q ss_pred --cCccccCCCCCHHHHHHHH----------------HHcCCCcc--------ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 188 --ERETTLIGSLTVREYLYYS----------------ALLQLPGF--------FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 188 --~Q~~~l~~~lTV~e~l~~~----------------~~l~l~~~--------~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+|+..+++..+|.|+..++ ...++... ..+...++|+||+||+..+++++.+|+
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcc
Confidence 4665544455555544221 00111100 001113689999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
++ ||| .++.+.|++++ .+.+|++++|.+.
T Consensus 162 l~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred cC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 88 998 77888888875 5789999888754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-12 Score=138.36 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 219 KNGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 219 ~~~LSGGqrqRv------~IA~aL~~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
...||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++...||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCCE
Confidence 357999999988 567899999 999999999999999999999999999753 46888888886 36789999
Q ss_pred EEEEe
Q 005423 292 ICLLS 296 (697)
Q Consensus 292 v~vL~ 296 (697)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-13 Score=151.50 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=96.6
Q ss_pred eeeeeeEEcCCcE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 126 VKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 126 L~~vs~~v~~Ge~--~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
|++||+.+++|++ +||+||||||||||+|+|+|+.-. |.-. .........+.++|++|++.+++.+||.||+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~-~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPA-THTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcC-CCCCccceEeeEEEEeecCccccccchhhhh
Confidence 9999999999999 999999999999999999998421 2211 1101111124689999987766556655544
Q ss_pred HHHH------------------------Hc-CCC----ccccc-----------cCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 204 YYSA------------------------LL-QLP----GFFCQ-----------RKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 204 ~~~~------------------------~l-~l~----~~~~~-----------~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++. .. +.. ...+. ..++|+-.+ +.|+++|..+++|+
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI 180 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNII 180 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEE
Confidence 2210 00 111 00111 114677666 78999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTIN 279 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~tih 279 (697)
++|||+..|.+.....+.+.+++ +...|..|+.+..
T Consensus 181 ~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 181 PIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 99999999999999999999986 8888888887543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-12 Score=138.08 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=81.3
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCccEEEEcCccccCCCCCHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
-+++++.. .+|++++|+||||||||||+|+|+|..+ +.. |+|.++ |.... .....+++++|+..++++.+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35555553 4899999999999999999999999988 764 999987 65432 23457899999988887777765
Q ss_pred HHH--------------HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005423 202 YLY--------------YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267 (697)
Q Consensus 202 ~l~--------------~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 267 (697)
+.. +...+++....+....++| ||+||++||+++ ++..-.....++++++
T Consensus 281 ~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 281 FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAETRFENYHRILESM 344 (358)
T ss_dssp CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHH
Confidence 311 0112234444556678999 999999999864 3444444555666665
Q ss_pred HH
Q 005423 268 AS 269 (697)
Q Consensus 268 ~~ 269 (697)
.+
T Consensus 345 ~~ 346 (358)
T 2rcn_A 345 AQ 346 (358)
T ss_dssp C-
T ss_pred Hh
Confidence 43
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=132.53 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=91.3
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCC------CccEEEEcCccccCCCCCHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~--L~G~~~~~~--~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~ 200 (697)
+-+++|++++|+||||||||||++. +.+..++.. .-.+.|++++...... .+.+++.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 5688999999999999999999994 456666521 1125777777542110 011122111 222
Q ss_pred HHHHHHHHcCCCccccccCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHH
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPC-GERRRVRIARELV--MRPHVLFIDEPLYHLDSVSA------------LLMMVTLK 265 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSG-GqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~~------------~~i~~~L~ 265 (697)
+|+.+ ....++ .+.+.+..+.+++ .+|+++++||||+.+|.... .++++.|+
T Consensus 245 eni~~-------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~ 311 (400)
T 3lda_A 245 NNVAY-------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQ 311 (400)
T ss_dssp HTEEE-------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHH
T ss_pred hcEEE-------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHH
Confidence 22111 011222 2334444444443 46999999999999996533 67888999
Q ss_pred HHHH-cCCEEEEEEecCh------------------HHHHhccCEEEEEeCCe
Q 005423 266 KLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~-~g~tvi~tih~~~------------------~~i~~~~D~v~vL~~G~ 299 (697)
++++ .|.|||+++|... ..+.+.+|.++.|++|+
T Consensus 312 ~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 312 RLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 9985 4999999888711 23467799999998764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-14 Score=149.60 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=107.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++.+|+++.+. .+.+|+++++.+++|++++|+|+||||||||+++|+|++++.+ |+|.+.|.+...
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 44455554432 2468999999999999999999999999999999999988765 999999876421
Q ss_pred ---CCccEEEEcCccccCCCC------------CHHHHHHHHH-----------------------HcC-----------
Q 005423 180 ---PYGSYGFVERETTLIGSL------------TVREYLYYSA-----------------------LLQ----------- 210 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~l------------TV~e~l~~~~-----------------------~l~----------- 210 (697)
.+..+++++|++.++... ++.|.+.... ...
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 234678899987776431 1222221000 000
Q ss_pred -----C-------Ccc--ccc----cCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 211 -----L-------PGF--FCQ----RKNGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 211 -----l-------~~~--~~~----~~~~LSGGqrqRv~IA~aL~~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
+ +.. .++ ....+|+|++|++..|++++. +|++++ ||++|.....++++.|.+
T Consensus 182 ~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 182 DELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -----CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred ccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 0 000 011 113478999999999999987 688887 999999999999999988
Q ss_pred HHH
Q 005423 267 LAS 269 (697)
Q Consensus 267 l~~ 269 (697)
+..
T Consensus 258 ~~~ 260 (337)
T 2qm8_A 258 HRS 260 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-12 Score=140.31 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=94.7
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCccEEEEcCccccCC--
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIG-- 195 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~-- 195 (697)
-+++++.++.|+.++|+|+|||||||||++|+|..+.- ....|.|.+++. . --.+.+.+.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~------~-~~~l~DtpGli~~a 219 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------E-RFTLADIPGIIEGA 219 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS------C-EEEEEECCCCCCCG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc------c-eEEEEeccccccch
Confidence 47899999999999999999999999999999984310 012345544430 0 011222222211
Q ss_pred ----CCCHHHHHHHHHHcCCCcc-----c-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 196 ----SLTVREYLYYSALLQLPGF-----F-CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 196 ----~lTV~e~l~~~~~l~l~~~-----~-~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
.+. .+.+. ..-+.... . .+....||+||+||+++|++|+.+|.||++ +++|...+ ..++.++
T Consensus 220 ~~~~~L~-~~fl~--~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~ 291 (416)
T 1udx_A 220 SEGKGLG-LEFLR--HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALA 291 (416)
T ss_dssp GGSCCSC-HHHHH--HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHH
T ss_pred hhhhhhh-HHHHH--HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHH
Confidence 111 11111 11011100 1 234467999999999999999999999999 99998776 4455554
Q ss_pred HH-HHcCCEEEEEEecChHHHHhccCEE
Q 005423 266 KL-ASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 266 ~l-~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
+. .+.|.+++.++.+....+.++++.+
T Consensus 292 ~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 292 DALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 44 4557777776655444455555443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=132.62 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=71.7
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCC---CccEEEEcCccccCCCCC---------HHHHHHH
Q 005423 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMP---YGSYGFVERETTLIGSLT---------VREYLYY 205 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~~---~~~~~yv~Q~~~l~~~lT---------V~e~l~~ 205 (697)
+.|.||||+|||||+++|+| +..++. |++.++|.+...+ ...+++++|.+.+.-..+ +++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKE 115 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC----CCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHH
Confidence 89999999999999999999 666654 9999988653321 245677777654321111 2222221
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
.. .... ..... .+|| +..+|+|+|+|||++ ||..++..+++.|.+.. .++++|+++|++..
T Consensus 116 ~~--~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 116 VA--QMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp HT--TTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred HH--Hhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 11 1000 00000 3455 788999999999999 99999999999998864 46788888888753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.5e-13 Score=139.68 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH----HcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA----LLQ 210 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~----~l~ 210 (697)
++.+++|.|+||||||||++.|++++++. | . ..+.+.+|.|++.+++. ++++|+.+.. .+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999987642 2 0 02345566899888754 7788876541 000
Q ss_pred ---CC----------------cc----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005423 211 ---LP----------------GF----------FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256 (697)
Q Consensus 211 ---l~----------------~~----------~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~ 256 (697)
.| .. .....+.+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 95 ~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 01 11 123347899999999999733322999999999999999853
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-14 Score=141.08 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=67.9
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
.++|++++|+||||||||||+++|+|++++.+...|.|.++|...... ....+...... +...........+...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~ 97 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKG-APETFDFEGFQRLCHALKH 97 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTT-SGGGBCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCC-CCchhhHHHHHHHHHHHhc
Confidence 358999999999999999999999999875322348888877543110 00111111000 0001111111111111111
Q ss_pred Ccc----ccccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 005423 212 PGF----FCQRKNGLPCGERRRVRIA-RELVMRPHVLFIDEPL 249 (697)
Q Consensus 212 ~~~----~~~~~~~LSGGqrqRv~IA-~aL~~~P~iLlLDEPT 249 (697)
.+. ......++|+||+||+++| ++++.++.++++|||.
T Consensus 98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 110 1133456899999999998 8888888888888884
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-13 Score=148.54 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=114.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeC------CCCCccE---EEEcCcccc
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKS------EMPYGSY---GFVERETTL 193 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~------~---~~~~~G~I~i~G~~~------~~~~~~~---~yv~Q~~~l 193 (697)
.+++|+.++|+|+||+|||||+|+|+|... | -....|.|.++|... ..+.+.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 345899999999999999999999999321 0 012359999988421 1122222 466777887
Q ss_pred CCCCCHHHHH--HHHHHcCCCcc--------ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHH
Q 005423 194 IGSLTVREYL--YYSALLQLPGF--------FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 194 ~~~lTV~e~l--~~~~~l~l~~~--------~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~ 261 (697)
....+..|++ .|...++-.+. .+.....++|+. +| +++++|||+.++|+......+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~ 163 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHL 163 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHH
Confidence 7777766655 44433332111 112233456653 89 999999999999999999999
Q ss_pred HHHHHH-HHcCCEEEEEEecChHHHHhccCEEE-EEeCC-eEEEEeCch
Q 005423 262 VTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 307 (697)
Q Consensus 262 ~~L~~l-~~~g~tvi~tih~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 307 (697)
+.++++ ++.|.|++ +|. ...+.++||++. +|.+| ++++.|+.+
T Consensus 164 ~~l~~~~~~~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 164 EGLRKITSRGANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHTTCCSSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHhcCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999998 77777754 454 568889999999 99999 988877654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.5e-14 Score=157.23 Aligned_cols=151 Identities=16% Similarity=0.088 Sum_probs=97.8
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CccEEEEcCcc---------
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERET--------- 191 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~--------- 191 (697)
..+++++++.+++|+.++|+|||||||||||++|+|+++++. |.|.++|.. .... ...++++.|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998875 999998864 2211 22344444321
Q ss_pred -------------ccCCCCCHHHHHHHHHHcCCC---------------------------cc----cc---ccCCCCCH
Q 005423 192 -------------TLIGSLTVREYLYYSALLQLP---------------------------GF----FC---QRKNGLPC 224 (697)
Q Consensus 192 -------------~l~~~lTV~e~l~~~~~l~l~---------------------------~~----~~---~~~~~LSG 224 (697)
.+++.++..|++.+...+... .. .+ .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 233456666765443221100 00 00 12235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EEecChHHHHhcc
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 289 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--tih~~~~~i~~~~ 289 (697)
|||||+++|. + | |+|||+.....+++.|.++.++|.|+++ ++|. ..++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~-l~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKK-LEKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTH-HHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHH-HHHHHHHc
Confidence 9998877641 2 7 9999987766666666666555667663 3443 33444444
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-12 Score=137.24 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=95.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEE-------------------cCCcEEEEECCCCCcHHHHHHHHHcCCC--CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~ 163 (697)
.++++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|+++ |+
T Consensus 37 ~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 467788876652 5888898887 8999999999999999999999999876 65
Q ss_pred CCceeEEEE---CCEeCCC-CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc-ccccCCCCCHHHHHHHHHHHHHhh
Q 005423 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+ |+|.+ +|..... ..+.++++ |+..+++.+++.+++.+...+.-... ...+....+.+ +|+..+.+.+.
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~--~~~~~~~~~~~ 183 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY--DVIPDGDKTVV 183 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTT--EECTTCCEEEC
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceeccccccccc--CcccccceecC
Confidence 4 99999 8865321 12346788 77777788999999988765533221 11111111222 33333334456
Q ss_pred CCCEEEEeCCCCCCCH
Q 005423 239 RPHVLFIDEPLYHLDS 254 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~ 254 (697)
+|+++|+|.|....|.
T Consensus 184 ~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 184 QPDILILEGLNVLQSG 199 (308)
T ss_dssp -CCEEEEECTTTTCCG
T ss_pred CCCEEEECchhhCCCc
Confidence 7899999999988774
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-13 Score=144.96 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=80.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CccEEEEc-------
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVE------- 188 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------- 188 (697)
+|+++ + .++|++++|+|||||||||||++|+|.+++.. |+|.+.|.++... ...+++.+
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 56666 3 37899999999999999999999999988764 9999988765321 12344443
Q ss_pred --Ccccc--CCC----CCHHHHHHHHHHcCC-------Ccc---c----------cccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 189 --RETTL--IGS----LTVREYLYYSALLQL-------PGF---F----------CQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 189 --Q~~~l--~~~----lTV~e~l~~~~~l~l-------~~~---~----------~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
|++.. ++. .|+.+++.++..-++ ... . ......|||||+|| |||+|+.+|
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p 310 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDC 310 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTT
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCC
Confidence 77654 343 588888876532110 000 0 01225699999999 999999999
Q ss_pred CEEEE
Q 005423 241 HVLFI 245 (697)
Q Consensus 241 ~iLlL 245 (697)
++..-
T Consensus 311 ~~~~~ 315 (418)
T 1p9r_A 311 KEPYE 315 (418)
T ss_dssp CEEEE
T ss_pred CccCC
Confidence 99763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-11 Score=124.14 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=89.2
Q ss_pred ceeeee-eeEEcCCcEEEEECCCCCcHHHHHHHH-HcCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccCCCC
Q 005423 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI-AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSL 197 (697)
Q Consensus 124 ~iL~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L-~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~l 197 (697)
+.|+.+ .+-+++|++++|.||||||||||+..+ .+..+.+. +.+++++..... ....+++.+|+......+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l 86 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMF 86 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcE
Confidence 456666 677889999999999999999996544 44444332 455555432100 001123322211000001
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCC
Q 005423 198 TVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGC 272 (697)
Q Consensus 198 TV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~ 272 (697)
++.+. +...++...........-+....+....++.++ .+|+++++|||++.+ |.....+++..|.+++ +.|.
T Consensus 87 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 164 (247)
T 2dr3_A 87 AMVDA--FTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGC 164 (247)
T ss_dssp EEEEC--STTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred EEEec--chhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 10000 000000000000000000112223333344444 589999999999988 6555566666666665 6689
Q ss_pred EEEEEEecChHH-------HHhccCEEEEEeC
Q 005423 273 TLLFTINQSSTE-------VFGLFDRICLLSN 297 (697)
Q Consensus 273 tvi~tih~~~~~-------i~~~~D~v~vL~~ 297 (697)
|||+++|..... +.+.+|.++.|+.
T Consensus 165 ~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 165 TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 999987765431 4578899999964
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-14 Score=145.04 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=88.5
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCcc-ccCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERET-TLIGS 196 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~-~l~~~ 196 (697)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|+. ...+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998754 7899998654221 12355666553 23333
Q ss_pred CCHHHHHHHHHHc-------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC------------CCCHHHH
Q 005423 197 LTVREYLYYSALL-------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY------------HLDSVSA 257 (697)
Q Consensus 197 lTV~e~l~~~~~l-------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs------------gLD~~~~ 257 (697)
+++.|++...... ......++....|||||+||+.|++++..+|++| |||+. -.|...+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHH
Confidence 3333333221000 0111122334579999999999999999999986 98864 2355566
Q ss_pred HHHHHH
Q 005423 258 LLMMVT 263 (697)
Q Consensus 258 ~~i~~~ 263 (697)
.+|++.
T Consensus 184 ~~il~~ 189 (274)
T 2x8a_A 184 LAILKT 189 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-10 Score=120.08 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=79.4
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-HHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY-YSA 207 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~ 207 (697)
+++..++|++++|+|+|||||||+++.|++.+++.+ |+|.+.+.+.... ...|.+. +..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~-----------------~a~eqL~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRA-----------------AAIEQLKIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCH-----------------HHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccH-----------------HHHHHHHHHHH
Confidence 344456899999999999999999999999987654 7888876543110 1123332 233
Q ss_pred HcCCCccccccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005423 208 LLQLPGFFCQRKNGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268 (697)
Q Consensus 208 ~l~l~~~~~~~~~~LSGGqrqRv---~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~ 268 (697)
..+++. ....|||+.+++ +|++++..+|+++|+|||.. ......+++.|+++.
T Consensus 157 ~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 157 RVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 334432 235689999999 99999999999999999974 344556666666654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-13 Score=131.98 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 232 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 232 IA~-aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
+++ +++.+|++++|||+|+++|..+...|.+.|.++.++ . ...|.+ ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~---~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-M---ESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-T---TGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-H---HHhhcc-----CCceEEEECCC
Confidence 455 677888888899999999999999999999887653 1 112311 56999888763
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=114.44 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=83.5
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHH
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+++++. +|++++|+|+||+||||+++.|+|.+++.+ |+|.+.+.+...+. .+.| + + .+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~~----~~~q---l-------~--~~~ 149 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRPA----AREQ---L-------R--LLG 149 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCHH----HHHH---H-------H--HHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccHh----HHHH---H-------H--Hhc
Confidence 677877 899999999999999999999999987654 88888776532110 0000 0 0 111
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALLMMVTLKKLA 268 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP-TsgLD~~~~~~i~~~L~~l~ 268 (697)
...+++-... ..+-.-.+.+|.+|+++...+++++|+||| +.++|.....++.+..+.+.
T Consensus 150 ~~~~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 150 EKVGVPVLEV--MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp HHHTCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ccCCeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 2233332211 012344567899999998899999999999 99999988888877776653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.5e-11 Score=136.64 Aligned_cols=142 Identities=20% Similarity=0.156 Sum_probs=97.2
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccc---------
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (697)
...+++++++.+++|+.++|+||||+|||||+++|+|..++.. .|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 3468899999999999999999999999999999999987642 38888888765444445778765431
Q ss_pred -------------cCCCCCHHHHHH------------------HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 193 -------------LIGSLTVREYLY------------------YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 193 -------------l~~~lTV~e~l~------------------~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
.+..+++.+|+. +....+.-........++|+|++|++..++....++.
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~g 203 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKG 203 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTS
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCC
Confidence 111111111110 0000000000111226799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
+||+||... |++..+..+++.|++
T Consensus 204 vL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 204 VLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred EEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999988 899888888777764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=117.68 Aligned_cols=147 Identities=22% Similarity=0.195 Sum_probs=85.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
-+++|+++.|.||+|||||||+..++......+ |.+ .|+.-+...- +. +...++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~v--------------lyi~~E~~~~------~~--~a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GIA--------------AFIDAEHALD------PE--YAKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCE--------------EEEESSCCCC------HH--HHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeE--------------EEEECCCCcC------HH--HHHHcCC
Confidence 577999999999999999999888875432211 222 2222221110 00 1122222
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCC
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL----------DS---VSALLMMVTLKKL----ASTGC 272 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgL----------D~---~~~~~i~~~L~~l----~~~g~ 272 (697)
....-.-....+. .+-+.++++++.+ |+++++||+++.+ |+ ..+..+.+.+++| .+.|+
T Consensus 112 ~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~ 189 (349)
T 2zr9_A 112 DTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGT 189 (349)
T ss_dssp CGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 1100000011133 2345678888765 9999999999998 33 2223444555555 35689
Q ss_pred EEEEEEecChH---------------HHHhccCEEEEEeCCeEEEEeC
Q 005423 273 TLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 273 tvi~tih~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
|||++.|.... .+...||.++.++.++++..|+
T Consensus 190 tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 190 TAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp EEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred EEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 99997775431 2567899999998877665554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=114.72 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=88.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH-HcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLP 212 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~l~l~ 212 (697)
++|++++|+|+||+||||+++.|++.+.+.. | +.+.++.++.. ..+..|.+...+ ..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~~~~gl~ 163 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYAELLQAP 163 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHHTTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHHHhcCCC
Confidence 4799999999999999999999999886532 5 23455555542 346677776533 22333
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCEEEEEEecChHHHHhcc
Q 005423 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA---STGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 213 ~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~---~~g~tvi~tih~~~~~i~~~~ 289 (697)
... ..+ ++.-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++-..+...++.+.+
T Consensus 164 ~~~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 164 LEV-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp CCB-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred eEe-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 211 112 3344556654 5999999999 99999876655544443332 223344442234445777778
Q ss_pred CEEEEEeCCeEEEE
Q 005423 290 DRICLLSNGNTLFF 303 (697)
Q Consensus 290 D~v~vL~~G~iv~~ 303 (697)
|++..+..+.+|..
T Consensus 234 ~~~~~l~~~giVlt 247 (296)
T 2px0_A 234 KRFSSVPVNQYIFT 247 (296)
T ss_dssp TTTSSSCCCEEEEE
T ss_pred HHHhcCCCCEEEEe
Confidence 87766667777763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.6e-12 Score=133.12 Aligned_cols=129 Identities=25% Similarity=0.243 Sum_probs=90.5
Q ss_pred cceeeeeeeEEcCC-------cEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCCccEEEEcC
Q 005423 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKS-----EMPYGSYGFVER 189 (697)
Q Consensus 123 ~~iL~~vs~~v~~G-------e~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (697)
+.+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888776 889999999999999999999986221 01235555544332 112356899999
Q ss_pred ccccCCCCCHHHHHHHHHHc-CC-----------------Cc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 190 ETTLIGSLTVREYLYYSALL-QL-----------------PG----FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 190 ~~~l~~~lTV~e~l~~~~~l-~l-----------------~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.+.+.+ ++.|++...... +. +. ..+.++..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~-------------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII-------------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE--------------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce--------------
Confidence 887764 788887543211 10 00 01334568999999998655
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~ 269 (697)
.+||+.+..++.+.|++.++
T Consensus 175 --~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --EECCCCCHHHHHHHHHHHHH
T ss_pred --eeCCCCCHHHHHHHHHHHHH
Confidence 78898899999999999875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-10 Score=121.51 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CccEEEEcCccccC-----CCCCHH
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETTLI-----GSLTVR 200 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~l~-----~~lTV~ 200 (697)
.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|++.... ...+||++|.+.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 479999999999999999999999 888765 99999 88764321 12579999988553 67899
Q ss_pred HHH--HHHH------HcC--CC------------------c-cccccCCCCCHHHHHHHHHHHH
Q 005423 201 EYL--YYSA------LLQ--LP------------------G-FFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 201 e~l--~~~~------~l~--l~------------------~-~~~~~~~~LSGGqrqRv~IA~a 235 (697)
|++ .|.. ..+ .+ . ..+++++.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 877 4431 111 00 0 1122336799988999999874
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=120.08 Aligned_cols=172 Identities=12% Similarity=0.086 Sum_probs=107.0
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCC---Cc----cEEEEcCccccC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMP---YG----SYGFVERETTLI 194 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~~---~~----~~~yv~Q~~~l~ 194 (697)
...|+++.+-+++|+++.|.|++|+|||||+..+++...+.. | .|.+.+...... .+ ..++..+. ..-
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~-l~~ 265 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEMSAQQLVMRMLCAEGNINAQN-LRT 265 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSSCHHHHHHHHHHHHHTCCHHH-HHT
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECCCCHHHHHHHHHHHHcCCCHHH-Hhc
Confidence 356888888899999999999999999999999988654311 3 444433211100 00 01111111 011
Q ss_pred CCCCHHHHHHHHH---HcCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------HHHHHHHH
Q 005423 195 GSLTVREYLYYSA---LLQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD--------SVSALLMM 261 (697)
Q Consensus 195 ~~lTV~e~l~~~~---~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD--------~~~~~~i~ 261 (697)
..++..|.-.+.. .+......-....++|++|.+ +.++.++ .+|+++++|+++...+ .....++.
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~ 343 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS 343 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH
Confidence 1233322211111 111112222334689999987 5677776 6899999999999774 23446788
Q ss_pred HHHHHHHH-cCCEEEEEEec-----------Ch-------HHHHhccCEEEEEeCCeE
Q 005423 262 VTLKKLAS-TGCTLLFTINQ-----------SS-------TEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 262 ~~L~~l~~-~g~tvi~tih~-----------~~-------~~i~~~~D~v~vL~~G~i 300 (697)
+.|+.+++ .|.+||+++|- |. ..+.+.||.|++|..++.
T Consensus 344 ~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 344 RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 88898884 58999997761 32 146778999999987653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-09 Score=119.35 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=46.8
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
.+|+++|+.+++ |+++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 589999999999 9999999999999999999999998876 9999999764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-09 Score=115.62 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=47.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CccEEEEcCccc-----------
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT----------- 192 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~----------- 192 (697)
.+.+|++++|+||||||||||+|+|+|+.+|.. |+|.+ +|+..... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345799999999999999999999999998875 99999 88764321 135789999874
Q ss_pred -----cCCCCCHHHHHHHH
Q 005423 193 -----LIGSLTVREYLYYS 206 (697)
Q Consensus 193 -----l~~~lTV~e~l~~~ 206 (697)
+++++|+ ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5677777 776653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=100.02 Aligned_cols=128 Identities=17% Similarity=0.125 Sum_probs=73.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCC--------CceeEEEECCEeCC-------CCCccEEEEcC---c-c-cc-CCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSA--------RMYGEVFVNGAKSE-------MPYGSYGFVER---E-T-TL-IGS 196 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~--------~~~G~I~i~G~~~~-------~~~~~~~yv~Q---~-~-~l-~~~ 196 (697)
.++|+|+||||||||++.|+|...+.. ..+|+|.++|++.. ...+..+++++ . + .+ .-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 489999999999999999999865411 13689999996421 00111122221 1 0 00 001
Q ss_pred CC---HHHHHH-HHHHc---CCCc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 197 LT---VREYLY-YSALL---QLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 197 lT---V~e~l~-~~~~l---~l~~---~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
.+ ..+++. +...+ .... ..--...+|..-..+++.+|++|+.+|+++++| ||++|.....++++.|.+
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 11 122322 11100 0000 000001122222234578899999999999999 999999999999988875
Q ss_pred H
Q 005423 267 L 267 (697)
Q Consensus 267 l 267 (697)
.
T Consensus 189 ~ 189 (191)
T 1oix_A 189 E 189 (191)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-09 Score=105.79 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=45.0
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCccEEEEcCccccCCCCCHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45567999999999999999999999999864 2445553321 123457899998776655554443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-08 Score=106.90 Aligned_cols=69 Identities=26% Similarity=0.266 Sum_probs=43.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC---c-cEEEEcCccccCC----CCCH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY---G-SYGFVERETTLIG----SLTV 199 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~~---~-~~~yv~Q~~~l~~----~lTV 199 (697)
+.+.+|++++|+||||+|||||+|+|+|..++.. |+|.+ +|+...... + ..+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4566899999999999999999999999988764 99998 776543211 1 2699999987765 6789
Q ss_pred HHHH
Q 005423 200 REYL 203 (697)
Q Consensus 200 ~e~l 203 (697)
|++
T Consensus 245 -e~l 247 (307)
T 1t9h_A 245 -EEL 247 (307)
T ss_dssp -HHH
T ss_pred -HHH
Confidence 888
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-08 Score=108.24 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=73.4
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
.++++++.+.+| +.|.||+|+|||||+++|++..... -+.+++.. +. ..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~----------------~~-~~------- 88 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSD----------------FV-EL------- 88 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGG----------------TT-TC-------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHH----------------HH-HH-------
Confidence 455556666667 8899999999999999999854211 11221111 00 00
Q ss_pred HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----Hc
Q 005423 205 YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----ST 270 (697)
Q Consensus 205 ~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP----------TsgLD~~~~~~i~~~L~~l~----~~ 270 (697)
. .+ .|++++|..++++....|.|||+||+ +.|.|......+.++|..+. ..
T Consensus 89 ------~--------~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ------F--------VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ------C--------TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ------H--------hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00 26788999999999999999999999 34677776667777777664 34
Q ss_pred CCEEEEEEecC
Q 005423 271 GCTLLFTINQS 281 (697)
Q Consensus 271 g~tvi~tih~~ 281 (697)
+..||.++|.|
T Consensus 154 ~viVIaaTn~~ 164 (476)
T 2ce7_A 154 GIIVMAATNRP 164 (476)
T ss_dssp TEEEEEEESCG
T ss_pred CEEEEEecCCh
Confidence 67788888876
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-11 Score=127.98 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=75.9
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CccEEEEcCccc-cCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (697)
..+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... . .+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35789999999999 99999999999999999999875 2889998754211 0 123455666542 3445
Q ss_pred CCHHHHHHHHHHcCCC----------ccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 197 LTVREYLYYSALLQLP----------GFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~----------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+++.|++......+.. ....+....|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 5565665322110000 001122356899999999999999998876
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-09 Score=120.41 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=89.2
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCC--CCCHH--
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIG--SLTVR-- 200 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~--~lTV~-- 200 (697)
.+++.+.+|..++|.|++||||||+++.|.. +..... |++.+.+.+.... ... | ..-+++.. ...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~el~~--~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKMLELSV--Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSSGGGG--G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchhhhhh--h-ccCCcccceeecCHHHH
Confidence 3667778899999999999999999999875 333222 5565554432210 000 0 00011110 00121
Q ss_pred -HHHHHH-----------HHcCCCccc--c-ccCCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCH
Q 005423 201 -EYLYYS-----------ALLQLPGFF--C-QRKNGLPCGERRRV----------RIARELVMRPH-VLFIDEPLYHLDS 254 (697)
Q Consensus 201 -e~l~~~-----------~~l~l~~~~--~-~~~~~LSGGqrqRv----------~IA~aL~~~P~-iLlLDEPTsgLD~ 254 (697)
+.|... +..+..+.. + +....+||||+||. .+|+++...|. ++++||++.-+|.
T Consensus 233 ~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~ 312 (512)
T 2ius_A 233 ANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT 312 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence 222110 011111110 0 11134678887652 35666778898 7899999998884
Q ss_pred HHHHHHHHHHHHHHHc----CCEEEEEEecChHH-----H-HhccCEEEE
Q 005423 255 VSALLMMVTLKKLAST----GCTLLFTINQSSTE-----V-FGLFDRICL 294 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~----g~tvi~tih~~~~~-----i-~~~~D~v~v 294 (697)
....+.+.|.++++. |.++|+++|.|..+ + .++.+||.+
T Consensus 313 -~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 313 -VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp -HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred -hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 345566777766543 67899989988632 3 344556554
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-11 Score=123.66 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CccEEEEcCccc-cCCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGSL 197 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~l 197 (697)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|+.. ..+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5788999999999 99999999999999999999875 2889998754211 0 123455555532 33445
Q ss_pred CHHHHHHHHHHcCCC-----c-----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 198 TVREYLYYSALLQLP-----G-----FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 198 TV~e~l~~~~~l~l~-----~-----~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
++.|++......+.. . ...+....|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 555555321110000 0 01122256889999999999999998876 4543
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-10 Score=121.01 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=78.1
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccc-cCCCCCH--
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT-LIGSLTV-- 199 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~-l~~~lTV-- 199 (697)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..-+.+.......+++++|... ++...+.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999863 27765511111110112455555432 1111110
Q ss_pred -----------------HHHHHHHH-H--cC-----------CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEE-EeC
Q 005423 200 -----------------REYLYYSA-L--LQ-----------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF-IDE 247 (697)
Q Consensus 200 -----------------~e~l~~~~-~--l~-----------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl-LDE 247 (697)
.++...+. . +. -+...+.....+++|+++|+..+.+++.+|++++ ||+
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 11111000 0 00 1223344557799999999999888899999887 999
Q ss_pred CCC
Q 005423 248 PLY 250 (697)
Q Consensus 248 PTs 250 (697)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 987
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-08 Score=98.51 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-cCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G~~~~ 162 (697)
.+..+++|+.+++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 99754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=90.16 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=70.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----CCC---CceeEEEECCEeCC-----CC----CccEEE-EcCc-c-cc-CCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP-----HSA---RMYGEVFVNGAKSE-----MP----YGSYGF-VERE-T-TL-IGS 196 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~-----~~~---~~~G~I~i~G~~~~-----~~----~~~~~y-v~Q~-~-~l-~~~ 196 (697)
.++|+|+||||||||++.|+|... ++. ...|+|.++|.+.. .+ .+.+.. ..++ + .+ ...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 479999999999999999999753 211 12589999996421 11 111111 1111 0 00 001
Q ss_pred CC---HHHHHH-HHHHc---CCCc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 197 LT---VREYLY-YSALL---QLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 197 lT---V~e~l~-~~~~l---~l~~---~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
.+ -.+++. +...+ .... ..--...+|..-..+....|++|+.+|+++++| ||++|.....++++.|.+
T Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 87 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 11 122221 11111 0000 000000122211112345689999999999999 999999999999988876
Q ss_pred HH
Q 005423 267 LA 268 (697)
Q Consensus 267 l~ 268 (697)
..
T Consensus 165 ~~ 166 (199)
T 2f9l_A 165 EI 166 (199)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.8e-07 Score=97.40 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=81.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-EECCEeCCCC--CccEEEEcCccccCCCCCHHHHHHHHHH
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMP--YGSYGFVERETTLIGSLTVREYLYYSAL 208 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-~i~G~~~~~~--~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 208 (697)
=+++|+++.|.||+|||||||+..+++...+.+ |.+ ++++...... .+++++.+|+..+....++.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~------- 126 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ------- 126 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH-------
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH-------
Confidence 567999999999999999999999998754432 444 5544321110 112333333322222223333
Q ss_pred cCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHH-
Q 005423 209 LQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD----------------SVSALLMMVTLKKLAS- 269 (697)
Q Consensus 209 l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD----------------~~~~~~i~~~L~~l~~- 269 (697)
-+.+++.++ .+|+++++|+-++-.. ...-.++++.|+++++
T Consensus 127 --------------------~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 127 --------------------ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp --------------------HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 3578888887655443 1122345666677764
Q ss_pred cCCEEEEEEecC---------------hHHHHhccCEEEEEeCCe
Q 005423 270 TGCTLLFTINQS---------------STEVFGLFDRICLLSNGN 299 (697)
Q Consensus 270 ~g~tvi~tih~~---------------~~~i~~~~D~v~vL~~G~ 299 (697)
.+.+||++.|-. ...+..++|-++.|..++
T Consensus 187 ~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~ 231 (356)
T 3hr8_A 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGE 231 (356)
T ss_dssp SSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEE
T ss_pred cCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEecc
Confidence 478888865541 112456889999998643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-07 Score=96.55 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=78.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
..-.++|+|++|+|||||++.|+|..... | +.+.......++.+.++...+ .....++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~----~-----~~~~~t~~~~~~~~~~~~~~~------------~l~Dt~G~ 224 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEI----A-----SYPFTTRGINVGQFEDGYFRY------------QIIDTPGL 224 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEE----E-----CCTTCSSCEEEEEEEETTEEE------------EEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc----C-----CCCCeeeceeEEEEEecCceE------------EEEeCCCc
Confidence 45579999999999999999999865211 1 111111111233333321100 01123444
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ti 278 (697)
.......+|+||+|++. +.+...++-++++| +|++++|...+..+++.+++... +..+|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 44455678999999887 55556777889999 99999999998888888777653 66666656
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-08 Score=102.17 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=39.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
.++++|+...+. . ++.+.+ ++++|+|||||||||||++|+|+++|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~-------~-----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE-------E-----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC-------C-----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 467777654331 0 455556 8999999999999999999999998875 9999998764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=94.69 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
++++++.+++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCC
Confidence 367888889999999999999999999999999887654 8888876543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-07 Score=110.68 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE-eC
Q 005423 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-SN 297 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL-~~ 297 (697)
.-+|+|+.+|..+++.++.+++++++|||.. +||......+++.+.+.....++|+++.+++...+.+++++..++ ..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCccccc
Confidence 4578999999999999999999999999996 999887777777776655556788887555666777777754333 24
Q ss_pred Ce
Q 005423 298 GN 299 (697)
Q Consensus 298 G~ 299 (697)
|+
T Consensus 269 gr 270 (773)
T 2xau_A 269 GR 270 (773)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-08 Score=96.14 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
..++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 34589999999999999999999999875 7788887654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-07 Score=96.48 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEecccccCcceeeeeeeEEcC---CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~v~~---Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|+ ++.|. ....+|+|+|+.+++ |+.++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 98882 235799999999999 9999999999999999999999864
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-06 Score=93.04 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=82.3
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++......+ +. +.|+.- +++..+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~--------------Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RG--------------VAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CE--------------EEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---Ce--------------EEEEeC------CCCHHHHH
Confidence 34566666678999999999999999999988876432111 22 333322 23444433
Q ss_pred H--HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEE
Q 005423 204 Y--YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFT 277 (697)
Q Consensus 204 ~--~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t 277 (697)
. .+...+++... -+...||++|.+|++.|...+.++++.|.|+|... ..+|...++++.++ |..+|++
T Consensus 91 ~Rlls~~~~v~~~~-l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 91 LRALSDLTSINMHD-LESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHCCCHHH-HHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHhhCCCHHH-HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 12222332211 11247999999999999999999999999998654 33677777777644 5666663
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.16 E-value=7e-06 Score=86.88 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=29.9
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666666688999999999999999999988874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-05 Score=82.34 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
++..+.|.||+|+|||||+++|++.... --+.+++. .+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~----------------~l~~------------------- 92 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAA----------------SLTS------------------- 92 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEEST----------------TTSS-------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHH----------------HHhh-------------------
Confidence 5678999999999999999999986421 11222110 0000
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEEec
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----------SALLMMVTLKKLAS----TGCTLLFTINQ 280 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~tih~ 280 (697)
.. .-+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..+.. .+..+|.+++.
T Consensus 93 --~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 93 --KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp --SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred --cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 00 11467888888888888999999999998776532 22334444443321 23455666665
Q ss_pred Ch---HHHHhccCEEEEE
Q 005423 281 SS---TEVFGLFDRICLL 295 (697)
Q Consensus 281 ~~---~~i~~~~D~v~vL 295 (697)
|. ..+..-||+.+.+
T Consensus 169 ~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 169 PQELDEAALRRFTKRVYV 186 (297)
T ss_dssp GGGBCHHHHHHCCEEEEC
T ss_pred hhhCCHHHHhhCCeEEEe
Confidence 42 2334456655433
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-07 Score=91.26 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=39.7
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I--~i~G~~~ 177 (697)
...+.++...++|++++|+||||||||||+++|+++++. . |.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~-~---G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ-K---GKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH-T---TCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-c---CceEEEecCchh
Confidence 345566666679999999999999999999999998762 2 666 7777543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=83.92 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 208 (697)
+-+++|+++.|.||+|+|||||+..++.. .+... | |. ...+.|+.-+..+ ...+-......
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 46889999999999999999999998874 33210 0 00 0123333333211 11111111222
Q ss_pred cCCCcc--cc--ccCCCCCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHH
Q 005423 209 LQLPGF--FC--QRKNGLPCGE-RRRVRIARELV----MRPHVLFIDEPLYHLDSV------------SALLMMVTLKKL 267 (697)
Q Consensus 209 l~l~~~--~~--~~~~~LSGGq-rqRv~IA~aL~----~~P~iLlLDEPTsgLD~~------------~~~~i~~~L~~l 267 (697)
++.... .+ ......++.+ .+.+..++.++ .+++++++|+.++-.+.. ...+++..|+++
T Consensus 180 ~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~l 259 (343)
T 1v5w_A 180 FNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKI 259 (343)
T ss_dssp TTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 221110 00 0001123333 34555666666 569999999999866432 134566667777
Q ss_pred HH-cCCEEEEEEe
Q 005423 268 AS-TGCTLLFTIN 279 (697)
Q Consensus 268 ~~-~g~tvi~tih 279 (697)
++ .+.+||++.|
T Consensus 260 a~~~~~~Vi~~nq 272 (343)
T 1v5w_A 260 SEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHTCEEEEEEC
T ss_pred HHHhCCEEEEEee
Confidence 64 5888888554
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.6e-06 Score=88.54 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=78.8
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEe-----CCCCCccEEEEcCccc-cCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAK-----SEMPYGSYGFVERETT-LIG 195 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~-----~~~~~~~~~yv~Q~~~-l~~ 195 (697)
.+|+++++.+. .++|+|++|||||||++.|+| .+|.+. |.+.-.... ........+...+.+. .+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~---~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGS---GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFT 98 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCS---SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCC---CcccCcceEEEEecCCCcccceeeeecCCCcccC
Confidence 46777777776 899999999999999999999 445543 433222111 1111112232222211 111
Q ss_pred C-CCHHHHHHHHHH----------------------------cCCCccccc-cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 196 S-LTVREYLYYSAL----------------------------LQLPGFFCQ-RKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 196 ~-lTV~e~l~~~~~----------------------------l~l~~~~~~-~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
. -.+.+.+..... ..+|+.... ...+.++.++++..+++..+.+|+++++
T Consensus 99 ~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil 178 (360)
T 3t34_A 99 DFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178 (360)
T ss_dssp CHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence 1 012222211100 011221111 1134678899999999999999998777
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEec
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQ 280 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~tih~ 280 (697)
.-..+..|... ...+++++.+...| .++++ .+.
T Consensus 179 vv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V-~nK 212 (360)
T 3t34_A 179 AISPANQDLAT-SDAIKISREVDPSGDRTFGV-LTK 212 (360)
T ss_dssp EEEETTSCGGG-CHHHHHHHHSCTTCTTEEEE-EEC
T ss_pred EeecccCCcCC-HHHHHHHHHhcccCCCEEEE-EeC
Confidence 74334445433 45567777776555 45555 444
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.98 E-value=3e-06 Score=81.50 Aligned_cols=38 Identities=32% Similarity=0.151 Sum_probs=33.8
Q ss_pred ee--eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 125 VV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 125 iL--~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
.+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45 7889999999 99999999999999999999987653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-06 Score=82.60 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
++.+|++++|+||||||||||+++|+++..++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999999998553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.9e-06 Score=83.30 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
...+++|||+.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999765
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=84.34 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCc--EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHH-HHHcCC
Q 005423 135 PGT--MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY-SALLQL 211 (697)
Q Consensus 135 ~Ge--~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~-~~~l~l 211 (697)
+|. .+.|.||+|+|||||++.+++...+.. ...-+.+|.. + ..+..+.+.- ...++.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~---------------~----~~~~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF---------------I----YRNFTAIIGEIARSLNI 100 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT---------------T----CCSHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc---------------c----CCCHHHHHHHHHHHhCc
Confidence 456 899999999999999999998765431 0022333221 1 1122222211 112221
Q ss_pred CccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEecC
Q 005423 212 PGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQS 281 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~tih~~ 281 (697)
+ ....+.+.++..... ...+ ..+|.+|++||+... |......+.+.+.++.. .+.++|+++|.+
T Consensus 101 ~----~~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 101 P----FPRRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp C----CCSSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred c----CCCCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 1 112344544433321 1222 245889999999876 88888888888877765 577888877876
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-06 Score=95.79 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=51.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEE-EeCCeEEEEeCch
Q 005423 238 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 307 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 307 (697)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 6788899999998888899999888875543333344333 4457777666654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.5e-06 Score=81.46 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (697)
+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 69999999999999999999999987642 23555443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.1e-05 Score=80.43 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=75.3
Q ss_pred eeeee-eEEcCCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 126 L~~vs-~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+ ...+-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCC----CHHHHH
Confidence 44432 568899999999999999999999888642 2210 00 00 0123333332211 111111
Q ss_pred HHHHHcCCCcc--cc--ccCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------H----HHHHHHHH
Q 005423 204 YYSALLQLPGF--FC--QRKNGLPCG-ERRRVRIARELV---MRPHVLFIDEPLYHLDS--------V----SALLMMVT 263 (697)
Q Consensus 204 ~~~~~l~l~~~--~~--~~~~~LSGG-qrqRv~IA~aL~---~~P~iLlLDEPTsgLD~--------~----~~~~i~~~ 263 (697)
.....++.... .+ ...+..++. +.+.+..++.++ .+|+++++|+.++-.+. . ...+++..
T Consensus 160 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~ 239 (324)
T 2z43_A 160 NMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQ 239 (324)
T ss_dssp HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHH
Confidence 11122222110 00 001122333 335677788887 57999999999986532 1 12456666
Q ss_pred HHHHHH-cCCEEEEEEec
Q 005423 264 LKKLAS-TGCTLLFTINQ 280 (697)
Q Consensus 264 L~~l~~-~g~tvi~tih~ 280 (697)
|+++++ .+.+||++.|.
T Consensus 240 L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 240 LTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHhCCEEEEEcce
Confidence 666664 58888886543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=1.1e-06 Score=86.58 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=70.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~ 217 (697)
+++|+|+|||||||+.+.|+++ |...+++.... +.+ .+ ....++.+.. ...+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~---~~~---~~----~~~~~~~~i~---~~~g~~----- 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVA---REV---VA----KDSPLLSKIV---EHFGAQ----- 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHH---HHT---TC----SSCHHHHHHH---HHHCTT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHH---HHH---cc----CChHHHHHHH---HHhCHH-----
Confidence 6899999999999999999983 33334332110 000 00 0011111111 111111
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH-HHhccCEEEEEe
Q 005423 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-VFGLFDRICLLS 296 (697)
Q Consensus 218 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~-i~~~~D~v~vL~ 296 (697)
.-.+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .+.++|+.+|..... ....||.+++++
T Consensus 58 --~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 58 --ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp --CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred --HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 113678999999999988888654333 2345555555554444332 355677665543211 256789888885
Q ss_pred CCeEEEEeCchhhHHhh
Q 005423 297 NGNTLFFGETLACLQHF 313 (697)
Q Consensus 297 ~G~iv~~G~~~~~~~~f 313 (697)
.+.+...+..
T Consensus 132 -------~~~e~~~~Rl 141 (206)
T 1jjv_A 132 -------VSPQTQLARS 141 (206)
T ss_dssp -------CCHHHHHHHH
T ss_pred -------CCHHHHHHHH
Confidence 3455555444
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=86.87 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCccEEEEcCc---------------
Q 005423 135 PGTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERE--------------- 190 (697)
Q Consensus 135 ~Ge~-~aIiG~sGsGKSTLl~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~--------------- 190 (697)
.|-. ++|+|++|||||||++.|+|..... ....|.|.++|.+... ....|++.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~~lve~f~~tl~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPPQIVDAFFVTLSEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCGGGHHHHHHHHHGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCHHHHHHHHHHHHHH
Confidence 3444 9999999999999999999986421 0246999999864310 0112222110
Q ss_pred ---ccc---C--CCCC--HHHHHH----HHHHcCCCcc----ccccCCCCCHHHHHHHHHH----HHH-hhCCCEEEEeC
Q 005423 191 ---TTL---I--GSLT--VREYLY----YSALLQLPGF----FCQRKNGLPCGERRRVRIA----REL-VMRPHVLFIDE 247 (697)
Q Consensus 191 ---~~l---~--~~lT--V~e~l~----~~~~l~l~~~----~~~~~~~LSGGqrqRv~IA----~aL-~~~P~iLlLDE 247 (697)
+.+ + .... ..+.+. ....++..+. ...+...+|+|+++|+.++ +++ ..+|++ +
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~ 331 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----I 331 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----E
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----E
Confidence 000 0 0001 122111 1111222111 1233345788889988887 554 334444 8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~ 269 (697)
|+|++|......+.+.|.++..
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999988764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-06 Score=89.67 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=42.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCCC------CccEEEEcCc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKSEMP------YGSYGFVERE 190 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~---G~~~~~~~~~G~I~--------i~G~~~~~~------~~~~~yv~Q~ 190 (697)
++|++++|+|||||||||++++|+ |+..++. |.|. .+|.+.... .+.+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~---g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS---GAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH---HHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC---CceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 589999999999999999999999 8876653 8888 788765221 1346777764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.6e-06 Score=83.94 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=32.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
.++|++++|.|+||||||||+++|+|+ . |+|.+++.+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~---g~v~~~~~~ 53 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----K---NDICLLTEP 53 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG----T---TTEEEECCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc----c---CCeEEEecC
Confidence 358999999999999999999999997 2 888888765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.81 E-value=1e-05 Score=80.16 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999875
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.78 E-value=4.5e-05 Score=80.11 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccc---cC--CCCC--HHHHHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT---LI--GSLT--VREYLYYSA 207 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~---l~--~~lT--V~e~l~~~~ 207 (697)
++..++|+|++|+|||||++.|.|.... + ..+.+.....+..+++.+++. +. |..- ....+.- .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-------i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~-~ 77 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-------I-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINR-L 77 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-------E-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHH-H
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-------c-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHH-H
Confidence 3448999999999999999999986311 0 011111111223444444321 11 1111 1111110 0
Q ss_pred HcC-----CCc-----cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC-
Q 005423 208 LLQ-----LPG-----FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC- 272 (697)
Q Consensus 208 ~l~-----l~~-----~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~- 272 (697)
..+ +.. ..-.... +|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |.
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~ 149 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFL 149 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcC
Confidence 001 110 0011123 999986 5666776 68999999 7899876 66788888888753 43
Q ss_pred -EEEEEEecChHHHHhccCEE
Q 005423 273 -TLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 273 -tvi~tih~~~~~i~~~~D~v 292 (697)
.+.++.|+ ...+.+++|.+
T Consensus 150 ~~i~iSA~~-g~~v~~l~~~i 169 (301)
T 1ega_A 150 DIVPISAET-GLNVDTIAAIV 169 (301)
T ss_dssp EEEECCTTT-TTTHHHHHHHH
T ss_pred ceEEEECCC-CCCHHHHHHHH
Confidence 33333333 23444455543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.77 E-value=3.8e-05 Score=84.69 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=71.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHH-HHcCCCc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS-ALLQLPG 213 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~-~~l~l~~ 213 (697)
++.+++++|++|+||||++..|++.+...+ ++|.+-+.+.. . ....|.+... ...+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~----------------r-~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVY----------------R-PAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCS----------------C-HHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCcc----------------c-hhHHHHHHHHHHhcCCce
Confidence 588999999999999999999998876543 56655443311 0 0123444332 2333332
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHHcCCEEEE
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL-YH--LDSVSALLMMVTLKKLASTGCTLLF 276 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT-sg--LD~~~~~~i~~~L~~l~~~g~tvi~ 276 (697)
.. ...+..--+-.+-+++.+...+++++|+|+|- .+ .|.....++.+.++.+......+++
T Consensus 156 ~~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVl 219 (433)
T 3kl4_A 156 YG--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVI 219 (433)
T ss_dssp EC--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEE
T ss_pred ee--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEE
Confidence 21 11112222223345555556799999999997 35 7887777777666555433333333
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.1e-05 Score=94.02 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=73.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCccccCCCCCHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|...... .+.+.+..|...+... ++..|+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl-- 78 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL-- 78 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence 445689999999999999999999999765432 123777 555433221 1234444444333211 111111
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
...|+.. .+ ........-..+..++++| |+.|+|..+. +.++.+.+.+..+|+++|..
T Consensus 79 ---iDTpG~~-----~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~----~~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 79 ---LDAPGYG-----DF-----VGEIRGALEAADAALVAVS-AEAGVQVGTE----RAWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp ---EECCCSG-----GG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHH----HHHHHHHHTTCCEEEEEECG
T ss_pred ---EeCCCcc-----ch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHH----HHHHHHHHccCCEEEEecCC
Confidence 0111110 01 1122333346788899999 9999998776 33444445677777777764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.8e-08 Score=110.63 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=39.7
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
.+++++++.+.+| +.|+||||+|||||+++|+|... .|.+.++|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 4678888888899 99999999999999999999864 2788888754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.9e-06 Score=81.98 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=78.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~ 213 (697)
..|+.++|.||+||||||++.++........ |. ...++.+.+.+......++.+++.......+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~---~~-----------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQN---DR-----------AAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHT---TC-----------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhc---CC-----------CCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 4699999999999999998877653211000 10 012334444443333334555543211111100
Q ss_pred cc------cccC--C-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEe
Q 005423 214 FF------CQRK--N-----GLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTIN 279 (697)
Q Consensus 214 ~~------~~~~--~-----~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih 279 (697)
.. .+.. . =.+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.+
T Consensus 140 ~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT 217 (235)
T 3llm_A 140 SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSAT 217 (235)
T ss_dssp SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 00 0000 0 02445555543 33578999999999976 68877665555555544444567888877
Q ss_pred cChHHHHhccCE
Q 005423 280 QSSTEVFGLFDR 291 (697)
Q Consensus 280 ~~~~~i~~~~D~ 291 (697)
.+.....+++++
T Consensus 218 ~~~~~~~~~~~~ 229 (235)
T 3llm_A 218 IDTSMFCEYFFN 229 (235)
T ss_dssp SCCHHHHHHTTS
T ss_pred CCHHHHHHHcCC
Confidence 776665555543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.70 E-value=6.1e-06 Score=81.19 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=32.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
.++|++++|+|+||||||||++.|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 35799999999999999999999999876543 66766443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.69 E-value=3e-06 Score=96.42 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=38.9
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
.+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 4567777777 89999999999999999999999987654 377776663
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.5e-05 Score=78.60 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 799999999999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=76.44 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
+|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 69999999999999999999999864 667776643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=73.20 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+.|.||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998753
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.5e-05 Score=75.77 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=26.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|++++|+|+||||||||++.|++.++
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999999999753
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00055 Score=73.60 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
=+++|+++.|.|++|+|||||+..++......+ ...++++. +..+- +. ....++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~---------------E~s~~------~~--~a~~~g~ 113 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDA---------------EHALD------PI--YARKLGV 113 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEES---------------SCCCC------HH--HHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC---------------CCCcc------HH--HHHHcCC
Confidence 477999999999999999999988775422111 02233332 21110 00 0112221
Q ss_pred Cc--cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-H------------HHHHHHHHHHHH---H-Hc
Q 005423 212 PG--FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS-V------------SALLMMVTLKKL---A-ST 270 (697)
Q Consensus 212 ~~--~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~-~------------~~~~i~~~L~~l---~-~~ 270 (697)
.. ..-..+ -+. .+-+.+++.++ .+++++++|+++.-... . .+..+.+.+++| + +.
T Consensus 114 ~~~~l~i~~~--~~~--e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~ 189 (356)
T 1u94_A 114 DIDNLLCSQP--DTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 189 (356)
T ss_dssp CGGGCEEECC--SSH--HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhheeeeCC--CCH--HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 10 000011 122 23455666665 57999999999986631 1 112334444444 3 56
Q ss_pred CCEEEEEEecChH---------------HHHhccCEEEEEeCCeEEEEe
Q 005423 271 GCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 271 g~tvi~tih~~~~---------------~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.+||++.|.... .+...+|-++.+...++.-.|
T Consensus 190 ~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 190 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp TCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 8888885543211 345578988888766654333
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00028 Score=78.05 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=90.7
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccE---EEEcCccccCCCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSY---GFVERETTLIGSLT 198 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~---~yv~Q~~~l~~~lT 198 (697)
.-|+.+.+=+++|+++.|.|++|+|||||+..++........ ...+.+....... ..+.. +-+..+...-..++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLT 266 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCC
Confidence 456666666889999999999999999999888764321110 0122332211000 00000 00111111111233
Q ss_pred HHHHHHHHH---HcCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHH
Q 005423 199 VREYLYYSA---LLQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS----------VSALLMMVT 263 (697)
Q Consensus 199 V~e~l~~~~---~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~----------~~~~~i~~~ 263 (697)
-.|.-.+.. .+......-....++|..+- .+.++.+. .+|+++++|..+.-.+. .....+.+.
T Consensus 267 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~ 344 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRG 344 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHH
Confidence 222211111 11111111122345676665 34556665 47999999998764432 123567788
Q ss_pred HHHHHH-cCCEEEEEEecCh------------------HHHHhccCEEEEEe
Q 005423 264 LKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLS 296 (697)
Q Consensus 264 L~~l~~-~g~tvi~tih~~~------------------~~i~~~~D~v~vL~ 296 (697)
|+.+++ .+.+||++.|-.. ..+.+.+|.|+.|.
T Consensus 345 Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 345 LKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 888885 5889998666321 03456789999885
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.1e-05 Score=77.94 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.4
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4578889999999999999999999875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.56 E-value=1.5e-05 Score=90.62 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.0
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~I~-i~G~~ 176 (697)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 466899999999999999999999999987653 4 674 77643
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.1e-06 Score=86.25 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=33.1
Q ss_pred cceeeeeeeEEcCCc------EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 123 DKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge------~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++.|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356777777776666 999999999999999999999876
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.3e-05 Score=78.78 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=36.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 237 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 237 ~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
..+|++|++||+-. ..|..++..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 45799999999865 234478888999999888888888887876643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.52 E-value=2e-05 Score=77.04 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=31.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 237 VMRPHVLFIDEPLY-HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 237 ~~~P~iLlLDEPTs-gLD~~~~~~i~-~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
+.++++|++||+-. .++...+..++ .++......+..+|++++++..++...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 45688999999933 23333344344 355554456677888888876665543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.52 E-value=7e-06 Score=87.61 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++..+.|.||+|+|||||++.+++..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=3.3e-05 Score=73.31 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.|++++|+|+||||||||+++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999763
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.43 E-value=2.1e-05 Score=75.31 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00092 Score=67.03 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3799999999999999999997653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=72.16 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=31.7
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEEecCh
Q 005423 238 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQSS 282 (697)
Q Consensus 238 ~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~tih~~~ 282 (697)
.+|.+|++||.-.-- +...+..+.+.+..+.+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 578999999965432 233477788888888776765 777776543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=68.67 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=24.1
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999873
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0001 Score=81.08 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.6
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 346679999999999999999999999987653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00059 Score=70.07 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||||+++|+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 56679999999999999999999865
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=72.79 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------cChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih---------~~~~~i~~~~D~v~vL~ 296 (697)
+|+++++||--. |+. .+++.++.+++.|..||++-| .++..+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 356677777777999999888 66788899999999875
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=7.5e-05 Score=71.57 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (697)
+|++++|+|++||||||+++.|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999976542 4 5656554
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=73.39 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=30.2
Q ss_pred eeeeeeEEc---CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005423 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (697)
Q Consensus 126 L~~vs~~v~---~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (697)
|.++++++. +|.+++|.|++||||||+++.|+..+.. + +++..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~---~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-D---YDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-T---SCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-C---CCcee
Confidence 445555554 8999999999999999999999998765 3 55543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.19 E-value=3.3e-05 Score=82.54 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=42.1
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEeec
Confidence 457888898889999999999999999999999999876543 666665443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0026 Score=68.61 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=74.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
=+++|+++.|.|++|+|||||+..++......+ + .+.|+.-+...- +. +...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~--------------~vlyi~~E~s~~------~~--~a~~~g~ 124 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG---G--------------TCAFIDAEHALD------PV--YARALGV 124 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---C--------------CEEEEESSCCCC------HH--HHHHTTC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---C--------------eEEEEECCCChh------HH--HHHHcCC
Confidence 567999999999999999999977764321111 1 233433332111 00 1122222
Q ss_pred Ccc--ccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---H-Hc
Q 005423 212 PGF--FCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHL-----DS--------VSALLMMVTLKKL---A-ST 270 (697)
Q Consensus 212 ~~~--~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL-----D~--------~~~~~i~~~L~~l---~-~~ 270 (697)
+.. .-..+ -+. .+-+.+++.++ .+++++++|..++=. |. ..+..+.+.+++| + +.
T Consensus 125 d~~~l~i~~~--~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~ 200 (366)
T 1xp8_A 125 NTDELLVSQP--DNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKT 200 (366)
T ss_dssp CGGGCEEECC--SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHceeecC--CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHc
Confidence 110 00111 122 23456667776 468999999998754 11 1223355555555 4 45
Q ss_pred CCEEEEEEecChHH----------------HHhccCEEEEEeCCe
Q 005423 271 GCTLLFTINQSSTE----------------VFGLFDRICLLSNGN 299 (697)
Q Consensus 271 g~tvi~tih~~~~~----------------i~~~~D~v~vL~~G~ 299 (697)
+.+||++.| .... +...+|-++.|..++
T Consensus 201 ~~~VI~~nq-~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 201 GTAAIFINQ-VREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp CCEEEEEEE-C---------------CHHHHHHHCSEEEEEEEES
T ss_pred CCEEEEEEe-cccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 788877544 3321 345688888887554
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0012 Score=61.78 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=66.56 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||||+++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999754
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0019 Score=69.14 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||||+++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 56679999999999999999999764
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.08 E-value=6.7e-05 Score=80.99 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.0
Q ss_pred eEEEEeEEEEEecccccCcceee--------------eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4788899988863 345777 899999999999999999999999999999864
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00094 Score=73.94 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=29.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.-|+.+.+=+++|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 345555556789999999999999999998777653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=71.65 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=38.9
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
+++++. +|++++++|++||||||++..|++.+.+.+ |+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeeccc
Confidence 567776 899999999999999999999999987654 8888876553
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0019 Score=67.98 Aligned_cols=164 Identities=17% Similarity=0.114 Sum_probs=82.9
Q ss_pred eeeeee-eEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEE-ECCEeCCCC-CccEEEEcCccccCCCCCH
Q 005423 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVF-VNGAKSEMP-YGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 125 iL~~vs-~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~-i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV 199 (697)
.|+.+- +-+++|+++.|.|++|+|||||+..++.- ++. |... ..|...... ...+.|+.-+..+- .
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~-----~~~~~~~~~~~gg~~~~~v~yi~~e~~~~----~ 156 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE-----FLFYDEEAVSKGEVAQPKAVYIDTEGTFR----P 156 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG-----GEECCTTTSCTTTTSSEEEEEEESSSCCC----H
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccc-----cccccccccccCCCCCceEEEEECCCCCC----H
Confidence 344433 56789999999999999999999888752 221 0000 000000000 02345554443221 1
Q ss_pred HHHHHHHHHcCCCcc--ccc--cCCCCCHHH-HHHHHHHHHHhh---CCCEEEEeCCCCCCC--------HHH----HHH
Q 005423 200 REYLYYSALLQLPGF--FCQ--RKNGLPCGE-RRRVRIARELVM---RPHVLFIDEPLYHLD--------SVS----ALL 259 (697)
Q Consensus 200 ~e~l~~~~~l~l~~~--~~~--~~~~LSGGq-rqRv~IA~aL~~---~P~iLlLDEPTsgLD--------~~~----~~~ 259 (697)
.+-......++.+.. .++ ..+..+..+ .+-+..++.++. +++++++|.-++-.. ... ..+
T Consensus 157 ~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~ 236 (322)
T 2i1q_A 157 ERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 236 (322)
T ss_dssp HHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHH
Confidence 211112222222110 000 011123332 233445556664 589999999876431 111 245
Q ss_pred HHHHHHHHH-HcCCEEEEEEecChH----------------HHHhccCEEEEEeCC
Q 005423 260 MMVTLKKLA-STGCTLLFTINQSST----------------EVFGLFDRICLLSNG 298 (697)
Q Consensus 260 i~~~L~~l~-~~g~tvi~tih~~~~----------------~i~~~~D~v~vL~~G 298 (697)
++..|++++ +.+.+||++ +|... .+.+.+|.++.|+..
T Consensus 237 ~~~~L~~la~~~~~~vi~~-nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 237 HMATLNKLADLFNCVVLVT-NQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHHHHHHHHHHTTCEEEEE-ECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHhCCEEEEE-CceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 666666766 458888885 44221 255568888888643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00099 Score=69.15 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=65.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE-EEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
...+.|.||+|+|||||+++|++...... |. +.++... +.......+ ..+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~----------------~~~~~~~~~------l~g~~~- 100 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTE----------------YMEKHAVSR------LIGAPP- 100 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGG----------------CCSTTHHHH------HHCCCT-
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeeccc----------------ccccccHHH------hcCCCC-
Confidence 46899999999999999999999765432 32 2222111 111111111 111111
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHH----------cCCEEEEEEecChH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLAS----------TGCTLLFTINQSST 283 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~----------~g~tvi~tih~~~~ 283 (697)
+..|- .++-.+..++...| .+|++||. ..|++..+..+++.|.+-.- .+..+|++++....
T Consensus 101 ------~~~~~-~~~~~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 101 ------GYVGY-EEGGQLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp ------TSTTT-TTCCHHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred ------ccccc-cccchHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 11111 11113444555555 79999998 56788888888887765321 13336666666444
Q ss_pred HHHhc
Q 005423 284 EVFGL 288 (697)
Q Consensus 284 ~i~~~ 288 (697)
.+.+.
T Consensus 173 ~i~~~ 177 (311)
T 4fcw_A 173 LILEG 177 (311)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 44443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00015 Score=77.73 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
++.+++|+|++|||||||++.|+|...+.+ |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 588999999999999999999999876554 777766544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00033 Score=69.39 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (697)
+.+++|+|||||||||++++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865211112366654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=69.38 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+|.+++|+||||||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00089 Score=63.50 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00014 Score=71.69 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=32.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (697)
+++|.+++|+|++||||||+.+.|++.+++.. | .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~---g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDR---RVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHH---CCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccc---CCcEEEECCh
Confidence 34799999999999999999999999876332 6 6777654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00039 Score=73.21 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=31.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 237 VMRPHVLFIDEPLY-HLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 237 ~~~P~iLlLDEPTs-gLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
+.++++|++||.-. .++...+..++. +|.....+++.+|+|++.+..+....+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 56789999999832 344444444554 555543456677787888776665443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0025 Score=58.96 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
+..+|++||.- .|+...+..+++.|+.. ..+..+|++++.+..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 56799999984 68888888888888332 2345677777776543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0094 Score=62.85 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||||+++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 55678999999999999999999865
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0032 Score=65.91 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=35.6
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
+++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 666655 99999999999999999999999876543 677765544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00064 Score=67.03 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=23.8
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 334445554 999999999999999999863
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=66.50 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=30.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
.+++|+|+||||||||++.|.+.++..+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 578999999999999999999876543223477776553
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00056 Score=65.96 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.0
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45666778999999999999999999999975
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00023 Score=69.82 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+.|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998754
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00043 Score=66.59 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.+|.+++|+|++||||||+++.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999999988654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0015 Score=72.09 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~------~---~~~~G~I~i~G~~ 176 (697)
.++|+|+||+|||||++.|+|.... + ....|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997531 0 0235888888864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0015 Score=62.93 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4778888877777 5799999999999999999984
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.67 E-value=5.4e-05 Score=80.11 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+++|+++|| ...|+...+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888877543 334555566554
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00076 Score=65.71 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0082 Score=75.91 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=79.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-EECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
=+++|+++.|.||+|+|||||+..++....... |.+ ++++.. ..- + + .+..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g---~~VlyiS~Ee---------------s~~------q-l-~A~~lG 781 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH---------------ALD------P-I-YARKLG 781 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTS---------------CCC------H-H-HHHHTT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC---CCeEEEeccc---------------hHH------H-H-HHHHcC
Confidence 488999999999999999999999887533221 222 333321 110 0 0 022222
Q ss_pred CCcc--ccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-H
Q 005423 211 LPGF--FCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD-S------------VSALLMMVTLKKL---A-S 269 (697)
Q Consensus 211 l~~~--~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD-~------------~~~~~i~~~L~~l---~-~ 269 (697)
.+.. .-..+. +. .+-...++.++ .+|+++++|+-.+-.. . ..+.++.+.|++| + +
T Consensus 782 vd~~~L~i~~~~--~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke 857 (1706)
T 3cmw_A 782 VDIDNLLCSQPD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857 (1706)
T ss_dssp CCGGGCEEECCS--SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhheEEecCC--cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 2110 000111 22 24445555554 5799999999987652 1 1223455555554 4 5
Q ss_pred cCCEEEEEEecC---------------hHHHHhccCEEEEEeCCeE
Q 005423 270 TGCTLLFTINQS---------------STEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 270 ~g~tvi~tih~~---------------~~~i~~~~D~v~vL~~G~i 300 (697)
.|.+||++.|.. +..+.+.+|-++.+.+++.
T Consensus 858 ~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 858 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp HTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred cCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEeccc
Confidence 688888865521 1246677888998975543
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00045 Score=69.41 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEecC-h--------------------HHHHhcc
Q 005423 232 IARELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQS-S--------------------TEVFGLF 289 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~tih~~-~--------------------~~i~~~~ 289 (697)
+..+|..+|+++++||+-.- .+........+.+..+...|..++.|+|-- . +.+++.|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 33345578999999997642 342222333344444556788888888711 1 2355677
Q ss_pred CEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 290 DRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 290 D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
|.|.+++ -+|+++.+.+..
T Consensus 157 ~~v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 157 FDLVLID-------LPPRELLERLRD 175 (228)
T ss_dssp SEEEEBC-------CCHHHHHHHHHT
T ss_pred CeEEEec-------CCHHHHHHHHHC
Confidence 8777764 467777776654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.002 Score=63.03 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------cChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih---------~~~~~i~~~~D~v~vL~ 296 (697)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.++||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 5533 36678888878999999877 66788999999998775
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00055 Score=69.69 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.0
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 3457889999999999999999999987642 456677643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00066 Score=65.95 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec---------ChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~---------~~~~i~~~~D~v~vL~ 296 (697)
+++++++||.=- +|+ .+++.|++++++|..|+++-+. +...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 3667788888779999988772 2345666799887664
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0094 Score=59.25 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=40.0
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChH---------HHHhccCEEEEEe
Q 005423 237 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLA-STGCTLLFTINQSST---------EVFGLFDRICLLS 296 (697)
Q Consensus 237 ~~~P~iLlLDEPTs----gLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~---------~i~~~~D~v~vL~ 296 (697)
-.+|+++++|--+. .-|.....+++..|++++ +.|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45899999996432 114455567777888877 458999997765422 1345789998885
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00037 Score=74.64 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.5
Q ss_pred ceeeeeeeEEcCCcE--EEEECCCCCcHHHHHHHHHcCC
Q 005423 124 KVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~--~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 577888888899998 9999999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=69.71 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999765
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0007 Score=65.78 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=30.9
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++++++..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357888888877775 689999999999999999874
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=64.37 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999864
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0042 Score=65.61 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.7
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+-+.+|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56778999999999999999999999753
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=62.64 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=62.26 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
|.++.|.|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=73.22 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred eeeeee--eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
-|+.+- +=+++|+++.|.||+|+|||||+-.++......+ + .+.|+.-+...-+ +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G---~--------------~vlyis~E~s~~~---~--- 426 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---K--------------TCAFIDAEHALDP---I--- 426 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---C--------------CEEEECTTSCCCH---H---
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C--------------CeEEEEccCchHH---H---
Confidence 455543 3578999999999999999999877764321111 1 2333333322110 0
Q ss_pred HHHHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-------------HHHHHHHHHHH
Q 005423 203 LYYSALLQLPG--FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS-------------VSALLMMVTLK 265 (697)
Q Consensus 203 l~~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~-------------~~~~~i~~~L~ 265 (697)
.+..++.+. ..-..+. ++.|- +.+++.++ .+|+++++|..++-... ..+..+.+.++
T Consensus 427 --~a~~lGvd~~~L~i~~~~--~~e~~--l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr 500 (1706)
T 3cmw_A 427 --YARKLGVDIDNLLCSQPD--TGEQA--LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (1706)
T ss_dssp --HHHHTTCCGGGCEEECCS--SHHHH--HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred --HHHHcCCCHHHeEEcCCC--CHHHH--HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHH
Confidence 122222211 0001111 33332 34556554 47999999999886641 12233445555
Q ss_pred HH---H-HcCCEEEEEEecCh---------------HHHHhccCEEEEEeCCeEEEEe
Q 005423 266 KL---A-STGCTLLFTINQSS---------------TEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 266 ~l---~-~~g~tvi~tih~~~---------------~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+| + +.|.+||++.|... ..+...+|-++.|...+.+..|
T Consensus 501 ~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 501 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp HHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccC
Confidence 55 3 56899998655321 2456789998888765544443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.004 Score=60.16 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.028 Score=62.81 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=27.4
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
-|+.+.+=+.+|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4455444588999999999999999999876664
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=60.69 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0058 Score=60.78 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------cChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih---------~~~~~i~~~~D~v~vL~ 296 (697)
+.+++++||.-- +|.. +++.|++++..|+.||++-+ .++..+.++||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6533 33778888878999999888 78889999999999885
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.015 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||||+++++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=70.38 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.+..|..++|+|+||+|||||+++|+|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34457889999999999999999999986
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00062 Score=72.20 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.5
Q ss_pred cceeeeeeeEEcCCcE--EEEECCCCCcHHHHHHHHHcCCCC
Q 005423 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~--~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577778888888988 999999999999999999997644
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0052 Score=64.76 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=63.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl-~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
=+.+| ++.|.||+|+|||||+ .+++.....+. .|. +.|+.-+..+.+ . ....++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~--g~~--------------vlyId~E~s~~~---~-----ra~~lG 79 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYP--DAV--------------CLFYDSEFGITP---A-----YLRSMG 79 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCT--TCE--------------EEEEESSCCCCH---H-----HHHHTT
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCC--Cce--------------EEEEeccchhhH---H-----HHHHhC
Confidence 35689 9999999999999995 44444322100 022 233333222211 0 123333
Q ss_pred CCcc--ccccCCCCCHHHHHHHHHHHHH--h--hCCCEEEEeCCCCCC-----CH----------HHHHHHHHHHHHH--
Q 005423 211 LPGF--FCQRKNGLPCGERRRVRIAREL--V--MRPHVLFIDEPLYHL-----DS----------VSALLMMVTLKKL-- 267 (697)
Q Consensus 211 l~~~--~~~~~~~LSGGqrqRv~IA~aL--~--~~P~iLlLDEPTsgL-----D~----------~~~~~i~~~L~~l-- 267 (697)
+... .-..+ .-+|.+.+.++.+| + .+|++++.|=-++-. +. ..++.+-+.|++|
T Consensus 80 vd~d~llv~~~---~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~ 156 (333)
T 3io5_A 80 VDPERVIHTPV---QSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTP 156 (333)
T ss_dssp CCGGGEEEEEC---SBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHH
T ss_pred CCHHHeEEEcC---CCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHH
Confidence 3211 10111 13566656777766 3 369999999877643 11 1223344445543
Q ss_pred -H-HcCCEEEEEEec
Q 005423 268 -A-STGCTLLFTINQ 280 (697)
Q Consensus 268 -~-~~g~tvi~tih~ 280 (697)
+ +.+.++|++-|-
T Consensus 157 ~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 157 YFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHhCCEEEEECCe
Confidence 3 568888886554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=64.09 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999999999743
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0056 Score=56.46 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+..+|++||.- .|+...+..+++.+.+-...+..+|++++.+.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYAA 117 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCCH
Confidence 46899999965 67888888888888775444566777777653
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0042 Score=69.51 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..-+.|.||+|+|||+|+++|+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 455669999999999999999998764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=68.27 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.9
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~ 157 (697)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35566666665 99999999999999999986
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0028 Score=60.53 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=58.95 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=45.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec---------ChHHHHhccCEEEEEe
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 296 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~---------~~~~i~~~~D~v~vL~ 296 (697)
+.+.+++++||----.| +.++++.+++.|+.||++-+. ++..+.++||.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999877654 667777777789999999898 8889999999999875
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=65.62 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (697)
.|.++.|.|||||||||+.+.|+...+. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876542 5566765
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=62.60 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||||+++|+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44558899999999999999999764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=63.87 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.022 Score=72.93 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=84.2
Q ss_pred eeeeee--eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
-|+.+- +=+++|+++.|.||+|+|||||+..++......+ ..-+++++. ...-+ +
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E---------------~s~~~---~--- 426 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAE---------------HALDP---I--- 426 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTT---------------SCCCH---H---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcC---------------CCHHH---H---
Confidence 344443 2578999999999999999999887765322111 022333332 11110 0
Q ss_pred HHHHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHH
Q 005423 203 LYYSALLQLPG--FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD-S------------VSALLMMVTLK 265 (697)
Q Consensus 203 l~~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD-~------------~~~~~i~~~L~ 265 (697)
.+..++.+. ..-. ..-+.. +-+.+++.|+ .+|+++++|.-++-.. . ..+..+.+.|+
T Consensus 427 --~a~~lGvd~~~L~I~--~~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr 500 (2050)
T 3cmu_A 427 --YARKLGVDIDNLLCS--QPDTGE--QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (2050)
T ss_dssp --HHHHTTCCTTTCEEE--CCSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred --HHHHcCCCHHHeEEe--CCCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHH
Confidence 012222211 0000 112333 3456667665 4799999999887552 1 12334556666
Q ss_pred HH---H-HcCCEEEEEEecCh---------------HHHHhccCEEEEEeCCeEEEEe
Q 005423 266 KL---A-STGCTLLFTINQSS---------------TEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 266 ~l---~-~~g~tvi~tih~~~---------------~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+| + +.|.+||++.|... ..+...+|-++.|...+....|
T Consensus 501 ~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 501 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp HHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 66 3 46888888655321 1356778999998765543333
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.003 Score=64.31 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|+||||||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999864
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=60.21 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999998643
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.029 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0031 Score=60.19 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=59.60 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0036 Score=58.37 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 005423 138 MTVIMGPAKSGKSTLLRAI 156 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L 156 (697)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.003 Score=61.57 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+.|+||||||||||++.|....|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.027 Score=62.15 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..-+.|.||+|+|||||+++|+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999865
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0046 Score=59.86 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.048 Score=60.03 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999976543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.004 Score=59.26 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=59.89 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0047 Score=60.83 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.039 Score=60.59 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=59.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.+.||+|+|||+|.++||+.... --+.+++.. +...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~----------------l~~~------------------ 245 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSE----------------FVHK------------------ 245 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGG----------------TCCS------------------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecch----------------hhcc------------------
Confidence 3344889999999999999999986421 112222211 0000
Q ss_pred ccccCCCCCHHHH-HHHHHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGER-RRVRIARELVMRPHVLFIDEPL----------YHLDSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGqr-qRv~IA~aL~~~P~iLlLDEPT----------sgLD~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
.+..+++ =|-....|--..|.|+++||-- ++-|......+.++|..+- ..+..||++|+
T Consensus 246 ------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 246 ------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp ------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred ------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 0111111 1223344445679999999962 3345455556666666664 23567888888
Q ss_pred cCh
Q 005423 280 QSS 282 (697)
Q Consensus 280 ~~~ 282 (697)
+|.
T Consensus 320 ~~~ 322 (428)
T 4b4t_K 320 RAD 322 (428)
T ss_dssp CSS
T ss_pred Chh
Confidence 774
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.005 Score=59.74 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.78 E-value=0.019 Score=60.24 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||+|+++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568999999999999999999763
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.029 Score=61.69 Aligned_cols=122 Identities=23% Similarity=0.254 Sum_probs=67.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.|.||+|+|||+|.++|++..... =+.+++.. +..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~----------------l~~------------------- 253 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ----------------LVQ------------------- 253 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------GCS-------------------
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh----------------hhh-------------------
Confidence 34448899999999999999999864211 11222111 100
Q ss_pred ccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGE-RRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
. .+..++ +-|-....|-...|.|||+||--+ +=|......+..+|..+- ..+..||.+|.
T Consensus 254 --~---~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 254 --M---YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp --S---CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred --c---ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 0 011122 223444555567899999999421 223344555666666663 23567778888
Q ss_pred cChHHHHhccCEEEEEeCCe---EEEEeCch
Q 005423 280 QSSTEVFGLFDRICLLSNGN---TLFFGETL 307 (697)
Q Consensus 280 ~~~~~i~~~~D~v~vL~~G~---iv~~G~~~ 307 (697)
+|.. .|.- ++..|| .++.+.|+
T Consensus 329 rp~~-----LD~A-llRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 329 RVDV-----LDPA-LLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp SCCC-----CCTT-TCSTTSEEEEEECCCCC
T ss_pred Cchh-----cCHh-HhcCCceeEEEEeCCcC
Confidence 8742 2221 234454 46666664
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.038 Score=60.08 Aligned_cols=99 Identities=26% Similarity=0.338 Sum_probs=58.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccccc
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~ 218 (697)
+.|.||+|+|||+|.+++++..... -+.++|.. +.. ..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~----------------l~s-k~vG------------------ 224 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE----------------LVQ-KYIG------------------ 224 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------GSC-SSTT------------------
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH----------------hhc-cccc------------------
Confidence 7899999999999999999864221 12222211 110 0111
Q ss_pred CCCCCHHHH-HHHHHHHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH----HcCCEEEEEEecCh
Q 005423 219 KNGLPCGER-RRVRIARELVMRPHVLFIDEPLYHL----------DSVSALLMMVTLKKLA----STGCTLLFTINQSS 282 (697)
Q Consensus 219 ~~~LSGGqr-qRv~IA~aL~~~P~iLlLDEPTsgL----------D~~~~~~i~~~L~~l~----~~g~tvi~tih~~~ 282 (697)
-+++ =|-....|--..|.|||+||--+-. |......+.++|..+- ..+..||.+|.+|.
T Consensus 225 -----ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 225 -----EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp -----HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred -----hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 1111 1223344445679999999965422 3445556677777764 23557788888774
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0052 Score=58.96 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999998643
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=59.79 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998653
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=57.89 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G 158 (697)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.041 Score=60.24 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=69.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.|.||+|+|||+|.++||+..... -+.+++.. +...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~----------------l~sk------------------ 255 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE----------------LIQK------------------ 255 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG----------------GCCS------------------
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH----------------hhhc------------------
Confidence 33448999999999999999999864221 12222211 1100
Q ss_pred ccccCCCCCHHHH-HHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGER-RRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGqr-qRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
.+-.+++ -|-....|--..|.|||+||--+ +=|......+..+|..+- ..+..||.+|.
T Consensus 256 ------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 256 ------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp ------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred ------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 0111222 23444455557799999999653 223445566667776664 23567888888
Q ss_pred cChHHHHhccCEEEEEeCCeE---EEEeCch
Q 005423 280 QSSTEVFGLFDRICLLSNGNT---LFFGETL 307 (697)
Q Consensus 280 ~~~~~i~~~~D~v~vL~~G~i---v~~G~~~ 307 (697)
+|.. .|.-+ +.-||. ++.+.|+
T Consensus 330 rpd~-----LDpAL-lRpGRfD~~I~v~lPd 354 (437)
T 4b4t_I 330 KIET-----LDPAL-IRPGRIDRKILFENPD 354 (437)
T ss_dssp CSTT-----CCTTS-SCTTTEEEEECCCCCC
T ss_pred Chhh-----cCHHH-hcCCceeEEEEcCCcC
Confidence 8742 33322 345543 5666664
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0038 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.+++|+|++|||||||++.|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0052 Score=58.30 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0055 Score=59.11 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999975
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0038 Score=67.13 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=32.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+.++|++..+ ..+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 35666665443 2345778888766 9999999999999999988644
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.05 Score=59.44 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0028 Score=61.91 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0062 Score=59.31 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0071 Score=57.72 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.015 Score=61.10 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|.||+|+|||||++.|+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 57999999999999999998764
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0064 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.084 Score=58.06 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=70.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
|-.=+.|.||+|+|||+|.++|++..... -+.+++.. +... .+.|
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~----------------l~sk-~~Ge------------- 258 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASG----------------IVDK-YIGE------------- 258 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------TCCS-SSSH-------------
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhh----------------hccc-cchH-------------
Confidence 44458899999999999999999864211 12222111 1100 0000
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HcCCEEEEEEec
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLA----STGCTLLFTINQ 280 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~----~~g~tvi~tih~ 280 (697)
+...-|-....|-...|.|||+||--+ +-|......+..+|..+- ..+..||.+|.+
T Consensus 259 ---------se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 259 ---------SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp ---------HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred ---------HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 111223444556667899999999854 234455566667777764 235678888888
Q ss_pred ChHHHHhccCEEEEEeCCe---EEEEeCch
Q 005423 281 SSTEVFGLFDRICLLSNGN---TLFFGETL 307 (697)
Q Consensus 281 ~~~~i~~~~D~v~vL~~G~---iv~~G~~~ 307 (697)
|.. .|.- ++..|| .++.+.|+
T Consensus 330 p~~-----LDpA-llRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 330 PDT-----LDPA-LLRPGRLDRKVEIPLPN 353 (437)
T ss_dssp TTS-----SCTT-TTSTTSEEEEECCCCCC
T ss_pred chh-----hCHH-HhCCCccceeeecCCcC
Confidence 742 3332 234554 35666664
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.024 Score=72.68 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=31.1
Q ss_pred cceeeeee--eEEcCCcEEEEECCCCCcHHHHHHHHH
Q 005423 123 DKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 123 ~~iL~~vs--~~v~~Ge~~aIiG~sGsGKSTLl~~L~ 157 (697)
...|+++. +-+++|+.+.|.||+|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678887 589999999999999999999999876
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0066 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998653
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0094 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|-.++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.021 Score=63.16 Aligned_cols=52 Identities=10% Similarity=-0.048 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEec
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~ 280 (697)
.|.+....+...+.+++++|+.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 4777777888888889887665544 4555443 44555544 467777776665
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.009 Score=57.83 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0075 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0087 Score=61.25 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.062 Score=59.33 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.|.||+|+|||+|.++||+..... =+.+++.. +.. ..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~----------------L~s-k~---------------- 283 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSE----------------LVQ-KY---------------- 283 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------GCC-CS----------------
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHH----------------hhc-cc----------------
Confidence 44458899999999999999999864221 11222111 110 00
Q ss_pred ccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGE-RRRVRIARELVMRPHVLFIDEPLYHL----------DSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTsgL----------D~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
+-.++ +-|-....|-...|.|||+||--+-. +......+..+|..+- ..+..||.+|.
T Consensus 284 -------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 284 -------VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp -------SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred -------CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 11122 23445556667789999999986533 3344556666777664 22456777777
Q ss_pred cCh
Q 005423 280 QSS 282 (697)
Q Consensus 280 ~~~ 282 (697)
+|.
T Consensus 357 rpd 359 (467)
T 4b4t_H 357 RPN 359 (467)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.035 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+.-+.|.||+|+|||++++.|....+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 456688999999999999999987543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.013 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.017 Score=60.84 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=29.5
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4566666555 7889999999999999999999885
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.013 Score=55.06 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
=+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=57.57 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.025 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999999766654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998853
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=56.50 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998643
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.011 Score=56.27 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=53.97 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999985
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.011 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.011 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7999999999999999998864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.015 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.0093 Score=64.46 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (697)
.+.-++|+|+||||||||++.|++.....+ +.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEE
Confidence 456789999999999999999998654433 556553
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998763
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.022 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.015 Score=53.69 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999875
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999763
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.014 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998864
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998764
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.018 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++-.++|.|++||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999854
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.025 Score=60.81 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|-.++|+|.+|+|||||++.|+|..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.018 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.024 Score=60.22 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999999764
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=58.31 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.021 Score=53.22 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.026 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.|..++|+||+|+|||||...|+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 58889999999999999999998763
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.016 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999886
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.016 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.019 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.016 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999974
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.019 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999863
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999999764
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.034 Score=58.84 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..+.|.||+|+|||||++.++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987653
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.021 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.018 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.13 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998764
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.02 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999853
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.023 Score=53.82 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++|+|++|+|||||++.|.|..+.
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 799999999999999999997653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.29 E-value=0.021 Score=52.50 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46679999999999999999998654
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.013 Score=60.99 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.029 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.02 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999875
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.022 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.022 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 37999999999999999999753
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.025 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=58.74 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.024 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999763
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.024 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.015 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999974
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.05 Score=64.99 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..+.|.||+|+|||+|.++|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998764
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.021 Score=58.50 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.027 Score=58.77 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.025 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.026 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.032 Score=55.54 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..++.|+||+||||+|..+.|+-.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.024 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.027 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.033 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.027 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.027 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999999864
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.028 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999973
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.03 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.028 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999999854
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.028 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.026 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.023 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.031 Score=58.47 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.029 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999999753
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.035 Score=55.00 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.+++|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.027 Score=56.46 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+|.+++|.|++||||||+++.|+..++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999987653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.027 Score=59.95 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999865
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.78 E-value=0.03 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.027 Score=53.74 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.028 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.027 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999853
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.032 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.028 Score=60.52 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||+++|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.032 Score=53.00 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.03 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998753
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.031 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.037 Score=57.07 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+||||+++.++..+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.041 Score=57.90 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+++|+||+|||||||.+.|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999765
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.03 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.035 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.027 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.034 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|.+|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999973
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.56 E-value=0.034 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.034 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999754
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.11 Score=54.03 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+.+-||+|+||||++++++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356777889999999999998765
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.034 Score=52.05 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355679999999999999999987653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.032 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.018 Score=56.19 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.033 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.032 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7999999999999999999854
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.034 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC--
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999998753
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.035 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999964
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.039 Score=55.67 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999876643
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.036 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.036 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.033 Score=58.83 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.035 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.035 Score=54.74 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.037 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.027 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.033 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999754
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.055 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.|.-++|.|+||+|||||...|..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5888999999999999999988764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.036 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.037 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.037 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.037 Score=57.39 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.041 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999854
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.033 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999975
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.035 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999988653
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.044 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.043 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
-++|+|.+|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 379999999999999999998654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.038 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.033 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.047 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.++++.|++||||||+++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999987653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.046 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.047 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
|.+++|-|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 66899999999999999999997764
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.048 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.++++.|++||||||+++.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876643
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.14 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.044 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 37999999999999999988753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.08 E-value=0.033 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.+++|.|+.||||||+++.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999999999998765
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.054 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987653
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.05 Score=60.22 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.0
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 344579999999999999999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.044 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.044 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.04 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.041 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999863
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.031 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.88 E-value=0.045 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7999999999999999999853
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.043 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.=.++|+|++|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 335899999999999999999754
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.049 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.051 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999975
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.052 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.063 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999974
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.069 Score=56.04 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999999764
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.059 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.03 Score=54.52 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.021 Score=57.89 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+|||||+++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999854
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.064 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.061 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 7999999999999999998753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.078 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
-.++++|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.19 E-value=0.031 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999876
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.044 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
=.++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999653
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.074 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+||+|||||||.+.|+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.067 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.077 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3799999999999999999875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.073 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.087 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-.+||+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998643
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.27 Score=57.61 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~ 213 (697)
+|.-.+.|.||+|+|||+|.++|+..... --+.+|.............+...+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~-----~~~~i~~s~~~~~~~~~~l~g~~~---------------------- 538 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHTVSRLIGAPP---------------------- 538 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSSSSCCSSSCCCCS----------------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcC-----CEEEEechhhcchhhHhhhcCCCC----------------------
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE--------------EEEEEe
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT--------------LLFTIN 279 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t--------------vi~tih 279 (697)
+..|-+..+.-....--..+.|||+||--.. ...+.+.|.++-++|.. +|++++
T Consensus 539 -------g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 539 -------GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp -------CSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred -------CCcCccccchHHHHHHhCCCcEEEEeCcccc-----CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Q ss_pred ----------------------------cChHHHHhccCEEEEEe
Q 005423 280 ----------------------------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 280 ----------------------------~~~~~i~~~~D~v~vL~ 296 (697)
.-..++..-+|.++.+.
T Consensus 607 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~ 651 (758)
T 1r6b_X 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD 651 (758)
T ss_dssp SSCC-----------------CHHHHHHHSCHHHHTTCSEEEECC
T ss_pred cchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeC
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 697 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-20 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-20 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-19 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-15 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-14 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 98.7 bits (246), Expect = 6e-24
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 29/225 (12%)
Query: 113 VTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
V ++ +R+ + V N G V++GP+ GK+T LR IAG + G +
Sbjct: 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRI 63
Query: 171 FVNGAKSEMPYGSY---GFVERETTLIGSLTVREYLYYSA-------------------L 208
+ V + + +TV E + + L
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 123
Query: 209 LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
LQ+ + L G+R+RV +AR +V+ P VL +DEPL +LD+ + M +KKL
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 269 -STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
T ++ + E + DRI +++ G L G
Sbjct: 184 QKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 98.1 bits (244), Expect = 1e-23
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 33/236 (13%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA VV KDL I K +++K + G + ++GP +GK+T LR I+ +
Sbjct: 1 GAVVV-KDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 54
Query: 163 SARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYYSA----------- 207
S+ G V V G ++ E ++ EYL + A
Sbjct: 55 SS---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE 111
Query: 208 --------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259
+ L R + G R++ IAR L++ P + +DEP LD ++A
Sbjct: 112 EMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315
+ LK+ + G T+L + + EV L DRI L+ NG + G + +
Sbjct: 172 VRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 91.9 bits (228), Expect = 6e-22
Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+V Y V++ G + GP GK+TLL+ I+ L
Sbjct: 6 RDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG--- 56
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA--------------LLQLPGF 214
E+ NG G F+ E + ++V +YL A L+
Sbjct: 57 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 116
Query: 215 FCQRKNG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 271
+K L G RRV++A L++ + +D+P+ +D S ++ ++ ++ G
Sbjct: 117 LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 272 CTLLFTINQSSTEVFGLFDRICLLSNGNT 300
++ S E D L +T
Sbjct: 177 IVIIS-----SREELSYCDVNENLHKYST 200
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 2e-21
Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 31/198 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-GFVER 189
G + ++GP +GKSTLL +AG G + G A S + ++ +
Sbjct: 24 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKLALHRAYLSQ 79
Query: 190 ETTLIGSLTVREYLYYSA--------------LLQLPGFFCQRKNGLPCGERRRVRIARE 235
+ T + V YL L L + N L GE +RVR+A
Sbjct: 80 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 139
Query: 236 LVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288
++ +L +DEP+ LD + L L G ++ +
Sbjct: 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM-SSHDLNHTLRH 198
Query: 289 FDRICLLSNGNTLFFGET 306
R LL G L G
Sbjct: 199 AHRAWLLKGGKMLASGRR 216
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.7 bits (225), Expect = 3e-21
Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 41/224 (18%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++T T K +K+ N G IMGP+ SGKST+L I + G
Sbjct: 5 KNVTKTYKMGEE-IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---G 60
Query: 169 EVFVNG---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ--------- 210
EV+++ +++ GFV ++ LI LT E + + +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 211 ----------LPGFFCQRKNGLPC----GERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256
+ + N P G+++RV IAR L P ++ D+P LDS +
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 257 ALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLFDRICLLSNG 298
+M LKKL G T++ T + V +RI L +G
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDI---NVARFGERIIYLKDG 221
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 90.0 bits (223), Expect = 8e-21
Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 28/220 (12%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ L V +K + G + ++G +GK+T L AIAG +
Sbjct: 10 QSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA------------------ 207
G+ N + V + LTV E L A
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 208 -LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266
+L Q L GE++ + I R L+ RP +L +DEP L + + ++K
Sbjct: 125 LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 267 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
+ G T+L + Q++ + +L G + G+
Sbjct: 185 INQEGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKA 223
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 89.6 bits (222), Expect = 1e-20
Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 42/208 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS------YGFVE 188
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 29 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAELYHYGIVRTF 85
Query: 189 RETTLIGSLTVREYLYYSA--------------------------------LLQLPGFFC 216
+ + +TV E L L+L +
Sbjct: 86 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD 145
Query: 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
++ L G+ + V I R L+ P ++ +DEP+ + A + + +L + G T L
Sbjct: 146 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 205
Query: 277 TINQSSTEVFGLFDRICLLSNGNTLFFG 304
I V D + ++ NG + G
Sbjct: 206 -IEHRLDIVLNYIDHLYVMFNGQIIAEG 232
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.8 bits (220), Expect = 4e-20
Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 37/193 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G M I G SGK++LL I G L S G + +G F + + ++
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSG--------RVSFCSQFSWIM 109
Query: 195 GSLTVREYLYYSA-------------------LLQLPG----FFCQRKNGLPCGERRRVR 231
T++E + + + + + L G+R R+
Sbjct: 110 -PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 168
Query: 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291
+AR + + +D P +LD + + + T + ++ E D+
Sbjct: 169 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK--MEHLRKADK 226
Query: 292 ICLLSNGNTLFFG 304
I +L G++ F+G
Sbjct: 227 ILILHQGSSYFYG 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 87.6 bits (217), Expect = 7e-20
Identities = 51/237 (21%), Positives = 81/237 (34%), Gaps = 48/237 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DL G +V+K + A G + I+G + SGKST LR I S G
Sbjct: 6 IDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 57
Query: 169 EVFVNGAKSEMPYGSY------------------GFVERETTLIGSLTVREYLYYSAL-- 208
+ VNG + V + L +TV E + + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 117
Query: 209 ------------------LQLPGFFCQRK-NGLPCGERRRVRIARELVMRPHVLFIDEPL 249
+ + + L G+++RV IAR L M P VL DEP
Sbjct: 118 LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 250 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
LD ++ +++LA G T++ + + + L G G+
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 86.0 bits (213), Expect = 2e-19
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 37/237 (15%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
A +I + ++ ++K N G +G + GKSTL+
Sbjct: 7 AQPIEIKQGRIDIDHVSFQYNDNEA---PILKDINLSIEKGETVAFVGMSGGGKSTLINL 63
Query: 156 IAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYY------ 205
I ++ G++ ++G + + ++ ++ S TV+E +
Sbjct: 64 IPRFYDVTS---GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 206 -------SALLQLPGFFCQRKNGLPC-----------GERRRVRIARELVMRPHVLFIDE 247
+ + F G G+++R+ IAR + P +L +DE
Sbjct: 121 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180
Query: 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
LD S ++ L L+ TL+ S+ D+I ++ NG+ + G
Sbjct: 181 ATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT---HADKIVVIENGHIVETG 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 85.7 bits (212), Expect = 2e-19
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 30/205 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMP--YGSYGF 186
G + ++G + +GKSTL+R + + G V V+G ++SE+ G
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGER 227
+ + L+ S TV + L+ L + L G++
Sbjct: 87 IFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 146
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287
+RV IAR L P VL DE LD + ++ LK + + I V
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 206
Query: 288 LFDRICLLSNGNTLFFGETLACLQH 312
+ D + ++SNG + H
Sbjct: 207 ICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 84.6 bits (209), Expect = 4e-19
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 25/200 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY--GFVERET 191
G V +GP+ GKSTLLR IAG ++ ++F+ + ++ P G V +
Sbjct: 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGEKRMNDTPPAERGVGMVFQSY 81
Query: 192 TLIGSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRVRI 232
L L+V E + + +LQL ++ L G+R+RV I
Sbjct: 82 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 141
Query: 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292
R LV P V +DEPL +LD+ + M + + +L + + E L D+I
Sbjct: 142 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI 201
Query: 293 CLLSNGNTLFFGETLACLQH 312
+L G G+ L +
Sbjct: 202 VVLDAGRVAQVGKPLELYHY 221
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.2 bits (208), Expect = 6e-19
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 33/207 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G +++GP+ GK+T LR IAG S ++++
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 186 FVERETTLIGSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGE 226
V + L +TV + + + LL L ++ L G+
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ 144
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEV 285
R+RV + R +V +P V +DEPL +LD+ + M LKKL G T ++ + E
Sbjct: 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEA 203
Query: 286 FGLFDRICLLSNGNTLFFGETLACLQH 312
+ DRI +++ G G
Sbjct: 204 MTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 83.4 bits (206), Expect = 2e-18
Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 33/238 (13%)
Query: 93 EGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152
EG V + G + ++++T T G+ +++ N G ++G + SGKST+
Sbjct: 2 EGKRVIDRATGD-LEFRNVTFTYPGREV---PALRNINLKIPAGKTVALVGRSGSGKSTI 57
Query: 153 LRAIAGRLPHSAR--MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY----- 205
I + + V + L Y
Sbjct: 58 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 117
Query: 206 --------SALLQLPGFFCQRKNGLPC-----------GERRRVRIARELVMRPHVLFID 246
+ + F + NGL G+R+R+ IAR L+ +L +D
Sbjct: 118 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 177
Query: 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
E LD+ S + L +L T L ++ ST D I ++ +G + G
Sbjct: 178 EATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERG 232
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 81.6 bits (201), Expect = 5e-18
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 22/208 (10%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
R++ + + + + G VI+GP +GK+ L IAG + + ++G
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDV 64
Query: 178 EMPYG---SYGFVERETTLIGSLTVREYLYYSA----------------LLQLPGFFCQR 218
FV + +L + V++ L + L++ +
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN 124
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278
L GE++RV +AR LV P +L +DEPL LD + L L + I
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 279 NQSSTEVFGLFDRICLLSNGNTLFFGET 306
TE + DRI ++ +G + G+
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKP 212
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 78.0 bits (192), Expect = 9e-17
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 37/213 (17%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP 180
S+++++ + A P ++ GP+ GKST+ + +A GE+ ++G +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNIS 70
Query: 181 YGSY----GFVERETTLIGSLTVREYLYYSA--------------LLQLPGFFCQRKNG- 221
++ GFV +++ ++ + T+RE L Y L F +
Sbjct: 71 LENWRSQIGFVSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL 129
Query: 222 ----------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 271
+ G+R+R+ IAR + P +L +DE LDS S ++ L L G
Sbjct: 130 NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-G 188
Query: 272 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
T L ++ ST V D+I + G G
Sbjct: 189 RTTLVIAHRLSTIV--DADKIYFIEKGQITGSG 219
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 77.0 bits (189), Expect = 2e-16
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 25/216 (11%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ + ++ ++R + + + + V++GP +GKS L IAG + GEV
Sbjct: 1 MFLKVRAEKRLGNFRLNVD--FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEV 55
Query: 171 FVNGAKSEMPYGS---YGFVERETTLIGSLTVREYLYYS--------------ALLQLPG 213
+NGA GFV ++ L L+V + Y + + G
Sbjct: 56 RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG 115
Query: 214 FFCQRKN---GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270
L GER+RV +AR LV++P +L +DEPL +D + ++M L+ +
Sbjct: 116 IAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175
Query: 271 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306
+ + E L D + ++ NG + G+
Sbjct: 176 FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 74.0 bits (181), Expect = 2e-15
Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 30/229 (13%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG S
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 166 MYGEVFVNGAKSEMP--YGSYGFVERETTLIGSLTVREYLYYS----------------- 206
+ + K +P G V + L +LT E + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 207 --ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 264
+L + L +++RV +AR LV P +L +DEP +LD+ +
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 265 KKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
K++ G TLL ++ ++F + DR+ +L G + G+ +
Sbjct: 184 KEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 72.3 bits (177), Expect = 8e-15
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 34/198 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----AKSEMPYGSYGFVER 189
G + I+G + SGKSTL + I +V ++G A G V +
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQ 84
Query: 190 ETTLIG------------SLTVREYLYYSALLQLPGF-----------FCQRKNGLPCGE 226
+ L+ ++V + +Y + L F ++ GL G+
Sbjct: 85 DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 144
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286
R+R+ IAR LV P +L DE LD S ++M + K+ G T++ ++ ST
Sbjct: 145 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--V 201
Query: 287 GLFDRICLLSNGNTLFFG 304
DRI ++ G + G
Sbjct: 202 KNADRIIVMEKGKIVEQG 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (170), Expect = 8e-14
Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 37/201 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG +T ++GP SGKST+ + + ++ ++G + + V +
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQ 95
Query: 190 ETTLIGSLTVREYLYY---------------------SALLQLPG----FFCQRKNGLPC 224
E + +++E + Y S + LP + + L
Sbjct: 96 EPQVF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG 154
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSST 283
G+R+ V +AR L+ +P VL +D+ LD+ S L + L + ++L S
Sbjct: 155 GQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214
Query: 284 EVFGLFDRICLLSNGNTLFFG 304
D I L G G
Sbjct: 215 --VEQADHILFLEGGAIREGG 233
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 62.3 bits (150), Expect = 7e-12
Identities = 24/159 (15%), Positives = 41/159 (25%), Gaps = 7/159 (4%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
+I G GK+TL++ I RL A + + GF T +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA---IGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 200 REYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259
++ L+ G + R V+ IDE
Sbjct: 61 SKFFTSKKLVGSYGVN-VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFR 119
Query: 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298
+ + + ++ TI I L
Sbjct: 120 DL-VRQIMHDPNVNVVATIPIRDVHPL--VKEIRRLPGA 155
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 37.2 bits (85), Expect = 0.004
Identities = 18/155 (11%), Positives = 45/155 (29%), Gaps = 19/155 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
++ + G +GK+ L+ N ++ + + E L+
Sbjct: 25 KDSIILATGATGTGKTLLVSRFV--------------ENACANKERAILFAYEESRAQLL 70
Query: 195 G---SLTV-REYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250
S + E + LL++ + + + + I R + +
Sbjct: 71 RNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALAR 130
Query: 251 HLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTE 284
+ + + ++ + A T LFT
Sbjct: 131 GVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFM 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 697 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.59 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.3 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.02 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.71 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.1 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.87 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.26 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.26 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.18 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.15 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.09 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.05 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.98 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.95 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.89 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.86 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.84 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.77 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.74 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.66 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.65 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.6 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.53 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.49 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.48 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.47 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.45 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.45 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.44 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.41 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.4 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.35 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.31 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.3 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.27 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.17 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.06 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.05 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.02 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.02 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.9 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.82 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.79 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.76 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.74 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.73 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.7 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.66 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.63 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.6 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.59 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.58 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.52 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.52 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.51 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.47 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.42 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.41 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.27 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.23 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.21 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.21 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.19 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.17 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.03 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.02 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.01 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.9 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.85 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.78 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.76 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.7 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.63 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.6 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.59 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.57 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.52 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.51 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.49 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.48 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.26 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.23 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.13 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.07 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.02 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.99 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.99 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.95 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.94 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.9 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.88 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.88 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.83 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.81 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.77 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.76 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.74 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.69 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.55 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.52 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.49 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.4 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.37 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.37 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.2 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.16 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.16 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.14 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.1 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.06 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.99 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.8 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.67 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.53 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.51 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.5 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.47 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.34 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.3 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.24 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.13 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.11 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.05 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.71 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.66 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.64 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.61 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.32 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.29 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.24 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.17 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.11 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.0 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.97 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.75 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.62 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.47 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.46 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.4 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.27 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.15 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.75 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.58 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.47 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.46 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.39 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.79 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.25 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.86 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.86 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.44 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.26 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.13 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.89 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.46 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.3 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.17 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.05 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.26 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.16 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.53 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.59 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.3 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.23 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.52 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.18 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.99 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.54 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.26 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.4 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-50 Score=408.86 Aligned_cols=198 Identities=27% Similarity=0.410 Sum_probs=174.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++.. .+
T Consensus 6 ~I~v~nlsk~yg-----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~s---G~I~i~g~~i~~~~~~~ 77 (239)
T d1v43a3 6 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGDRDVTYLPPKD 77 (239)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---CEEEEcceecccCCccc
Confidence 489999999994 4679999999999999999999999999999999999999975 999999998643 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|++.+++++||+||+.+.. .+++.+..++++++|||||||||+|||||+.+|+|
T Consensus 78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~i 157 (239)
T d1v43a3 78 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV 157 (239)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred ceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCc
Confidence 56999999999999999999997642 34566777889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++.+|+++|+++++ .|+|+|+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 158 LllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 158 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999975 499999987775 68999999999999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.1e-50 Score=407.32 Aligned_cols=198 Identities=25% Similarity=0.387 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|. ...+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 3 ~i~v~nl~k~yg-----~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~s---G~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGI 74 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEEEGGGTE
T ss_pred cEEEEeEEEEEC-----CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---CEEEECCEEecccchhh
Confidence 489999999993 4579999999999999999999999999999999999999875 999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+|||+|++.+++.+||+||+.+... +++.+..++++++|||||||||+|||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL 154 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAI 154 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 13579999999999999999999988643 3455666788899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+||||||||+|||+.++.+|+++|+++.++ |.|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 155 ~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999765 99999977764 68999999999999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-50 Score=408.88 Aligned_cols=197 Identities=30% Similarity=0.460 Sum_probs=147.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.+||+++.. .++
T Consensus 1 Iev~nv~k~yg-----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~s---G~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---CEEEECCEECCCCchhhc
Confidence 57999999993 4579999999999999999999999999999999999999875 999999987643 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.+|||+|++.+++.+||+||+.+... +++.+..++++++|||||||||+|||||+.+|++|
T Consensus 73 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~il 152 (232)
T d2awna2 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 152 (232)
T ss_dssp CEEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEE
T ss_pred eeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999987642 34555667788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++.+|++.|+++. +.|+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 153 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 153 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999999999997 4699999987764 68999999999999999999999999875
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.8e-50 Score=403.71 Aligned_cols=196 Identities=25% Similarity=0.360 Sum_probs=177.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (697)
++++||+++|. ..+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++... ++
T Consensus 2 i~v~nlsk~y~------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~s---G~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 2 IEIESLSRKWK------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp EEEEEEEEECS------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEeC------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCC---CEEEEccEeccccchhHh
Confidence 78999999983 248999999999999999999999999999999999999875 9999999987542 35
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.+|||+|++.+++.+||+||+.++.. +++.+..++.+.+|||||||||+|||||+++|++||||
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllD 152 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeec
Confidence 79999999999999999999988653 34555667888999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|||+.++.++.++|+++++ .|.|||+++|++ .++.++||||++|++|++++.|+++++++
T Consensus 153 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999975 599999977765 68999999999999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.9e-50 Score=407.20 Aligned_cols=200 Identities=25% Similarity=0.356 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++||+++|+. +...+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++..
T Consensus 3 ~i~v~nlsk~y~~---g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~---G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC---CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCC---ceEEECCEEeecCchhh
Confidence 4899999999953 34579999999999999999999999999999999999999875 99999998742
Q ss_pred --CCCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 179 --MPYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 179 --~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..++.+|||+|++.++|++||+||+.+.. .+++.+..++++++|||||||||+|||||+
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred cchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHh
Confidence 11357999999999999999999998753 234556667888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|+||||||||+|||+.++.++++.|+++++ .|.|+|+++|++ .++.++||||++|++|++++.|+++++++
T Consensus 157 ~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999975 599999987765 68999999999999999999999999865
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-49 Score=402.77 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
|+++||+++|..++ ...++|+||||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++...
T Consensus 2 i~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~s---G~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 2 IKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESEL 77 (240)
T ss_dssp EEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSE---EEEEETTEEECTTCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccC---CceEEcCeEeeeCChhhh
Confidence 78999999996432 23468999999999999999999999999999999999999875 9999999986432
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
++.+|||+|++.+++.+||+||+.+... +++.+..++++++|||||||||+|||||+.
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 2469999999999999999999988643 345566678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+||||||||+|||+.++.+|++.|++++++ |+|||+++|+ ..++..+||||++|++|++++.|+++++++
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-l~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC-HHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC-HHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999865 9999997776 468899999999999999999999999753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.5e-49 Score=397.55 Aligned_cols=195 Identities=30% Similarity=0.359 Sum_probs=170.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||+++|..++ ....+|+||||++++||++||+|||||||||||++|+|+.+|++ |+|.++|+++...
T Consensus 2 I~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~s---G~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCc---ceeEECCEEcCcCChhhc
Confidence 78999999996432 23468999999999999999999999999999999999999875 9999999986432
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHHc----------------------CCCc-cccccCCCCCHHHHHHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL----------------------QLPG-FFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------------~l~~-~~~~~~~~LSGGqrqRv~IA 233 (697)
++.+|||+|++.+++.+||+||+.++... ++++ ..++++++|||||||||+||
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIA 157 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHH
Confidence 13599999999999999999999886432 3333 24567899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+.+|+||||||||+|||+.++.+|+++|+++.+ .|+|||+++|++ .++ ++||||++|++|+|++.|++
T Consensus 158 raL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 158 RALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred hhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999985 499999988875 444 79999999999999999975
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-47 Score=390.27 Aligned_cols=201 Identities=28% Similarity=0.329 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+++|. .+++|+||||.+++||++||+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 2 aI~v~nl~k~yg-----~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~---G~i~i~G~~i~~~~~~~ 73 (238)
T d1vpla_ 2 AVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEV 73 (238)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTCHHHH
T ss_pred CEEEEeEEEEEC-----CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECcEecccChHHH
Confidence 378999999993 5689999999999999999999999999999999999999975 9999999986432
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++||||++.+++.+||.||+.+... +.+.+..++++++|||||||||+|||||+++|+
T Consensus 74 ~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ 153 (238)
T d1vpla_ 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 153 (238)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred HhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999977542 234455567789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
||||||||+|||+.++.++.++|++++++|+|||+++|+. .++..+||||++|++|++++.|+++++.+.+.
T Consensus 154 illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 154 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhccC
Confidence 9999999999999999999999999999999999988775 68999999999999999999999999987543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-47 Score=390.81 Aligned_cols=199 Identities=23% Similarity=0.313 Sum_probs=176.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 5 ~~Lev~~l~k~yg-----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~---G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHH
T ss_pred eEEEEeeEEEEEC-----CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEecccccccccHH
Confidence 4689999999993 4579999999999999999999999999999999999999875 9999999986542
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+..++|++|+..+++.+||+||+.+.... ++.+..++.+++|||||||||+|||||+.
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 13489999999999999999999764321 12233456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++||||++|++|++++.|+++++.+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999999999999977764 68999999999999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.7e-48 Score=395.55 Aligned_cols=198 Identities=25% Similarity=0.282 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.|+++||++.|. ..++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 2 ~Lev~nl~k~yg-----~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~---G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCEEECTT
T ss_pred eEEEEEEEEEEC-----CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCC---CCEEECCEEeccCCccc
Confidence 389999999993 4579999999999999999999999999999999999999875 999999987531
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcc-ccccCCCCCHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGF-FCQRKNGLPCG 225 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~-~~~~~~~LSGG 225 (697)
.++.+|||+|++.+++.+||.||+.+.. .+++.+. .++.+.+||||
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG 153 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGG 153 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred hhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHH
Confidence 1246999999999999999999998752 1234332 34567999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
|||||+|||||+.+|+||||||||+|||+.++.+|+++|++++++|+|||+++|+ ..++..+||||++|++|++++.|+
T Consensus 154 ~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHd-l~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE-MGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC-HHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCC-HHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999997665 578999999999999999999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++++
T Consensus 233 ~~ev~~ 238 (258)
T d1b0ua_ 233 PEQVFG 238 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-47 Score=390.83 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+++|. ..++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 4 iL~v~nlsk~yg-----~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (254)
T d1g6ha_ 4 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAE 75 (254)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred eEEEEEEEEEEC-----CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCC---cEEEECCEeccchhHHH
Confidence 589999999983 4579999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH--------------------------------cCCCccccccCCCCCHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL--------------------------------LQLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------------l~l~~~~~~~~~~LSGGq 226 (697)
+..++|++|++.+++.+||.||+.++.. +++....++++++|||||
T Consensus 76 ~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 155 (254)
T d1g6ha_ 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 155 (254)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHH
Confidence 1249999999999999999999976421 123333456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++|+|||+++|+. .++.++||||++|++|++++.|++
T Consensus 156 ~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 156 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhCCEEEEEeCCEEEEEecH
Confidence 9999999999999999999999999999999999999999999999999977765 689999999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
+|..+
T Consensus 235 ~e~~~ 239 (254)
T d1g6ha_ 235 EEEIK 239 (254)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-47 Score=385.96 Aligned_cols=196 Identities=25% Similarity=0.378 Sum_probs=169.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||+|.|+. ..+.+|+||||++++||.+||+||||||||||+++|+|+++|+. |+|.+||+++...
T Consensus 2 I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~l 75 (241)
T d2pmka1 2 ITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDGHDLALADPNWL 75 (241)
T ss_dssp EEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHHHH
T ss_pred eEEEEEEEEeCC---CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCC---CEEEECCEEecccchhhh
Confidence 789999999953 34579999999999999999999999999999999999999875 9999999987542
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCc----cccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPG----FFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~----~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++||+|++.+|+ .||+||+.+.. . ..++. ...+.+..|||||||||+|||||
T Consensus 76 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 76 RRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred hceEEEEecccccCC-ccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhh
Confidence 357999999999885 59999997631 0 11222 22345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+|||||||||+||+.++..|++.|+++.+ |+|+|+++|++. . .+.||||++|++|+|++.|+++++++
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS-T-VKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG-G-GTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred hcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999974 899999888864 4 47899999999999999999999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-47 Score=387.11 Aligned_cols=199 Identities=23% Similarity=0.310 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+|+|+++ ..+.+|+||||++++||++||+||||||||||+++|+|+++|.+ |+|.+||+++..
T Consensus 11 ~I~~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~---G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR--PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTTS--TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEECCCC--CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCc---CEEEECCEecchhhhHH
Confidence 59999999999642 24569999999999999999999999999999999999999875 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH---------------------HcCCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA---------------------LLQLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------------~l~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+ .||+||+.++. ..+++. ...+.+..|||||||||+|||
T Consensus 86 ~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHH
T ss_pred HHHHhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEee
Confidence 2357999999999985 59999997641 112332 234456789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++.+|++.|+++.+ .|+|+|+++|+. ..+ +.||||++|++|+|++.|+++++++
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~~~-~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-SLV-EQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-HHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999975 489999988875 344 6799999999999999999999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.8e-47 Score=390.11 Aligned_cols=195 Identities=24% Similarity=0.382 Sum_probs=167.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++||+|+|++ .+++|+||||++++||++||+||||||||||+++|+|+++|+. |+|.+||+++.. .
T Consensus 2 le~knvsf~Y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 2 LSARHVDFAYDD----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (242)
T ss_dssp EEEEEEEECSSS----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEECCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCC---CEEEECCEEeccccHHHH
Confidence 789999999853 3479999999999999999999999999999999999999875 999999998642 3
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH--------------cC-------CCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL--------------LQ-------LPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~-------l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|+. ||+||+.+... .. ++.. ..+.+..|||||||||+||||
T Consensus 75 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa 153 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (242)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HhheEEEccccccCCc-chhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 4679999999999976 99999865311 11 1111 123446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+|||||||||+||+.++.+|++.|++++ +|+|+|+++|++ ..+ ..||||++|++|+|++.|+++++++
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 154 FLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCH-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999997 589999988876 344 5699999999999999999999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.2e-46 Score=377.59 Aligned_cols=179 Identities=28% Similarity=0.410 Sum_probs=162.1
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCccEEEEcCccccCCCCCHHHHHH
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
|||+++. ||+++|+||||||||||+|+|+|+++|++ |+|.+||+++.. .++.+|||+|++.+++++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~---G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 68999999999999999999999999875 999999998642 2467999999999999999999998
Q ss_pred HHH-----------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005423 205 YSA-----------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267 (697)
Q Consensus 205 ~~~-----------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 267 (697)
|+. .+++.+..++++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++
T Consensus 93 ~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l 172 (240)
T d2onka1 93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHH
Confidence 742 245667778889999999999999999999999999999999999999999999999999
Q ss_pred HHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 268 AST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 268 ~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++ |+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 173 ~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 173 QREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 854 99999988775 68999999999999999999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-45 Score=379.18 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+|+|+.+ ..++|+|||+.+++||++||+||||||||||+++|+|+++|+. |+|.+||++....
T Consensus 13 ~I~~~nvsf~Y~~~---~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEeCCC---CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCc---cEEEECCcccchhhhhh
Confidence 59999999999642 3579999999999999999999999999999999999999875 9999999986542
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH-----------c----------CCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL-----------L----------QLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------l----------~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.++. .|+++|+.++.. + ++|. ...+.+.+|||||||||+|||
T Consensus 87 ~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 87 LRNQVALVSQNVHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred hhheEEEEeeccccCC-cchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHH
Confidence 346999999999885 599999876420 0 1222 233456789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|+.. .+ +.||+|++|++|+|++.|+++++++
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999974 889999888763 44 6799999999999999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.6e-45 Score=377.68 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+|+|++ ..+++|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|.++...
T Consensus 16 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 16 RIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccc---cccccCCEEcccCCHHH
Confidence 5999999999964 23579999999999999999999999999999999999999875 9999999986432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|+ .||+||+.++. . .++|.. ..+.+..|||||||||+||||
T Consensus 90 lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 90 LRNQIGLVQQDNILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred hhheeeeeeccccCCC-CCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHH
Confidence 357999999999885 59999997641 0 123332 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|++. . ...||+|++|++|++++.|+++++++
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-T-ITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999874 789999888764 4 46899999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-42 Score=348.93 Aligned_cols=192 Identities=24% Similarity=0.325 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--- 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~--- 181 (697)
.++++||+.+ .+|+||||.|++||++||+||||||||||+++|+|+.+ +. |+|.++|++.....
T Consensus 3 il~~~dv~~~---------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~---G~I~~~g~~i~~~~~~~ 69 (231)
T d1l7vc_ 3 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK---GSIQFAGQPLEAWSATK 69 (231)
T ss_dssp EEEEEEECCT---------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-CS---SEEEESSSBGGGSCHHH
T ss_pred EEEEECcccC---------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-Cc---eEEEECCEECCcCCHHH
Confidence 5788888532 47999999999999999999999999999999999865 43 99999998754321
Q ss_pred --ccEEEEcCccccCCCCCHHHHHHHH--------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhh-------
Q 005423 182 --GSYGFVERETTLIGSLTVREYLYYS--------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVM------- 238 (697)
Q Consensus 182 --~~~~yv~Q~~~l~~~lTV~e~l~~~--------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~------- 238 (697)
...+|++|+.......++.+++.+. ..+++.+..++++++|||||||||+|||+|++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p 149 (231)
T d1l7vc_ 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 149 (231)
T ss_dssp HHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred HHhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCC
Confidence 2479999987766677899988653 23456666778889999999999999999997
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|+||||||||+|||+.++..+.++|++++++|+|||+++|+ ..++.++|||+++|++|++++.|++++++
T Consensus 150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd-l~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC-HHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 779999999999999999999999999999999999997776 46899999999999999999999999885
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.3e-42 Score=355.02 Aligned_cols=176 Identities=22% Similarity=0.320 Sum_probs=150.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+++|+|||++|++||++||+||||||||||+++|+|+++|+. |+|.++|+ ++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g~--------i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSGR--------VSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEECCSC--------EEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCC---cEEEECCE--------EEEEeccccccCc-eeec
Confidence 4579999999999999999999999999999999999999875 99999983 8999999999875 9999
Q ss_pred HHHHHH------------H-------cCCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 202 YLYYSA------------L-------LQLPGF----FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 202 ~l~~~~------------~-------l~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
|+.++. . .+++.. ..+....|||||||||+|||||+.+|+||||||||++||+.++.
T Consensus 116 ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~ 195 (281)
T d1r0wa_ 116 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 195 (281)
T ss_dssp HHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHH
T ss_pred cccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHH
Confidence 997641 0 112221 22345679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++++.+.+....++|+|+++|+. +..+.||||++|++|++++.|+++++..
T Consensus 196 ~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 196 QVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99986544445688999988875 3457899999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-40 Score=329.30 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=155.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.|+++||++.|+ +++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.+||++....+..+
T Consensus 2 ~lev~~ls~~y~------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~---G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGGGGGE
T ss_pred eEEEEEEEEEeC------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCC---CEEEECCEehhHhcCcE
Confidence 489999999873 369999999999999999999999999999999999999975 99999999876666789
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHcC-----------------CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 185 GFVERETTLIGSLTVREYLYYSALLQ-----------------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l~-----------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+|++|+..++..+|++|++.+...+. +.+ ..++..+|||||||||+|||+|+.+|+++||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE 151 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD 151 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999999999998764322 111 234567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
||+|||+.++.++++.|+++.+++.++|+++||+. .+||.+.+|++
T Consensus 152 Pt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 152 PVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp TTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999876666666677753 57999998854
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.59 E-value=6.3e-18 Score=160.89 Aligned_cols=154 Identities=16% Similarity=0.047 Sum_probs=98.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEc-----CccccCCCCCHHHHHHHHHHcCCCc
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE-----RETTLIGSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~-----Q~~~l~~~lTV~e~l~~~~~l~l~~ 213 (697)
++|+||||||||||+++|+|.+++.. |.+...+........+.++.. +..... ..+..+.... ...
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~ 73 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRA---IGFWTEEVRDPETKKRTGFRIITTEGKKKIFS-SKFFTSKKLV-----GSY 73 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE---EEEEEEEEC------CCEEEEEETTCCEEEEE-ETTCCCSSEE-----TTE
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCc---ceEEECCcchHHHHHhhhhhhhhhhHHHHHHh-hhhhhhhhhh-----hhh
Confidence 79999999999999999999998764 889887754322211222211 111110 0000000000 000
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEE
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
........+|+|+++|.++++++..+|++|++|||....+ ....+.+.|.++. +.+.++|+++|+. ....++|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i 149 (178)
T d1ye8a1 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEI 149 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHH
T ss_pred hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceE
Confidence 0112224589999999999999999999999999854433 3455566666655 4578888877765 356789999
Q ss_pred EEEeCCeEEEEeC
Q 005423 293 CLLSNGNTLFFGE 305 (697)
Q Consensus 293 ~vL~~G~iv~~G~ 305 (697)
..+.+|+++.-++
T Consensus 150 ~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 150 RRLPGAVLIELTP 162 (178)
T ss_dssp HTCTTCEEEECCT
T ss_pred EEEeCCEEEEECC
Confidence 9999999986543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=1.1e-11 Score=132.40 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 221 GLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
.||||||.+++||-.+ ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+| .+.+.+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 4699999998887554 456789999999999999999999999999876566688888886 588999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=4.2e-10 Score=115.35 Aligned_cols=76 Identities=21% Similarity=0.172 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..+|+|||+...++..+ ..+|+++++|||-++||+..+..+.+.|+++.+ +.-||+|||.| .+.+.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEEE
Confidence 46999999998887664 446789999999999999999999999999874 56788889987 466899999764
Q ss_pred --eCC
Q 005423 296 --SNG 298 (697)
Q Consensus 296 --~~G 298 (697)
.+|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 455
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.10 E-value=1.8e-05 Score=77.34 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
.|-+|+.-....+.+..++|+||+.+|=|+.....+. ..++.|.+.+..+++++|+. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 5666666666667788899999999999987766554 45566677788888888874 45444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=7.4e-06 Score=80.70 Aligned_cols=120 Identities=17% Similarity=0.083 Sum_probs=66.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~ 213 (697)
+.++.|-|||.+||||+||.++=.. ... | ..+.. + -+-++--+.++..+...|++.-+
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~----G------~~VpA--~-~a~~~~~d~I~~~~~~~d~~~~~------- 100 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTALIALMAYI----G------SYVPA--Q-KVEIGPIDRIFTRVGAADDLASG------- 100 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHHTT----T------CCBSS--S-EEEECCCCEEEEEEC---------------
T ss_pred ceEEEEeccCchhhHHHHHHHHHHHHHHHc----C------CeEec--C-ceecccchhheeEEccCcccccc-------
Confidence 5689999999999999999875321 100 1 00000 0 01111112222222222322110
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHc-CCEEEEEEecC
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLAST-GCTLLFTINQS 281 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~-g~tvi~tih~~ 281 (697)
.+-=..|-+|++-...-+.+..++|+||+.+|=|+.....+.. .++.+..+ +..+++++|+.
T Consensus 101 ------~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 101 ------RSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp ---------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ------hhHHHHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 0112355666665555677778999999999999998888754 56778654 45667766654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.26 E-value=0.0017 Score=63.94 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.2
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+.+|+++.|.|++|+|||||+.-|+-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 56999999999999999999877763
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.0011 Score=65.16 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHH-cCCEEEEEEec
Q 005423 235 ELVMRPHVLFIDEPLY-----HLDSVSALLMMVTLKKLAS-TGCTLLFTINQ 280 (697)
Q Consensus 235 aL~~~P~iLlLDEPTs-----gLD~~~~~~i~~~L~~l~~-~g~tvi~tih~ 280 (697)
.-..+|+++++|--++ --|......+++.|+++++ .|++||+++|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995542 1256667788888888874 58888886553
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.18 E-value=0.0015 Score=62.88 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=39.6
Q ss_pred hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHH-HcCCEEEEEEecC---------hHHHHhccCEEEEEe
Q 005423 238 MRPHVLFIDEPLY---HLDSVSALLMMVTLKKLA-STGCTLLFTINQS---------STEVFGLFDRICLLS 296 (697)
Q Consensus 238 ~~P~iLlLDEPTs---gLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~---------~~~i~~~~D~v~vL~ 296 (697)
.+|++++.|--+. +.+.......+..|.+++ +.+.+++++.|.. ...+..++|-++.|+
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999987544 345555555566655555 5688888877642 123556899999885
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.15 E-value=0.00016 Score=65.89 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.|++++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998753
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=9.9e-05 Score=68.84 Aligned_cols=26 Identities=42% Similarity=0.852 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
|.+++|+||||||||||++.|....|
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00011 Score=66.60 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.98 E-value=0.00019 Score=69.62 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~ 171 (697)
+|++++++|+||+|||||+|.|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 58999999999999999999998864332 36664
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=2.1e-05 Score=72.99 Aligned_cols=34 Identities=21% Similarity=0.044 Sum_probs=27.7
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.+++.++.+.+| +++|+|||||||||+|++|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 345666667666 9999999999999999999744
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.89 E-value=0.00024 Score=64.63 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 699999999999999999999997653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00024 Score=64.53 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999999865
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0016 Score=64.28 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.-+.+.||+|+|||+|.++|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 447899999999999999999754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.84 E-value=0.00085 Score=68.60 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=27.7
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~ 164 (697)
++.|.-+.|.|+.||||||||++|++.+|+..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 44566689999999999999999999998764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.78 E-value=0.00021 Score=65.31 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (697)
+++|+|++|||||||++.|...+...+..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 6899999999999999988876654332335554333
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.77 E-value=0.00087 Score=65.78 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-+.|.||+|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.74 E-value=0.0011 Score=64.97 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+.||+|+|||+|.++|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.66 E-value=0.0084 Score=56.39 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=38.4
Q ss_pred hCCCEEEEeCCCCCC----CHHHH-HHHHHHHHHHHHcCCEEEEEEecChH--------HHHhccCEEEEEe
Q 005423 238 MRPHVLFIDEPLYHL----DSVSA-LLMMVTLKKLASTGCTLLFTINQSST--------EVFGLFDRICLLS 296 (697)
Q Consensus 238 ~~P~iLlLDEPTsgL----D~~~~-~~i~~~L~~l~~~g~tvi~tih~~~~--------~i~~~~D~v~vL~ 296 (697)
.+|+++++|--+.-. +.... ..+...++.+++.+.|++++.|+... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999766533 22333 34444445555779999998886542 3445789888875
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.65 E-value=0.00038 Score=63.38 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..++|.||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999865
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.60 E-value=0.00044 Score=62.66 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..++.|.|++||||||+.+.|+..++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.53 E-value=0.00023 Score=69.34 Aligned_cols=34 Identities=35% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~ 171 (697)
+|..++++|+||+|||||+|.|.|-..- .+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhcccc
Confidence 5889999999999999999999986432 236664
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.49 E-value=0.00068 Score=61.46 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|-.++|.||+||||||+.+.|+-.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999999765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.48 E-value=0.00066 Score=60.39 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G 158 (697)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.0054 Score=56.38 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+-+++.++|++||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998853
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00061 Score=65.09 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.|.++.|+||||+|||||.+.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987655
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.45 E-value=0.00063 Score=61.45 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.44 E-value=0.00058 Score=61.45 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.++.|.||+||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999997653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.41 E-value=0.0026 Score=60.81 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=53.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
...+++++||+|+||||.+-=|+-..... | ++++.+.-|..-.. -+.+--.|+..++.+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~----------g-------~kV~lit~Dt~R~g--a~eQL~~~a~~l~v~~~ 71 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKK----------G-------FKVGLVGADVYRPA--ALEQLQQLGQQIGVPVY 71 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHT----------T-------CCEEEEECCCSSHH--HHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC----------C-------CceEEEEeeccccc--hhHHHHHhccccCccee
Confidence 45689999999999998876566443211 1 23555544433221 23333456677776644
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
....+..+.--. +=++..+...+-+++|.| |+|..+
T Consensus 72 ~~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 72 GEPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp CCTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred ecccchhhhHHH--HHHHHHhhccCCceEEEe--cCCcCc
Confidence 333333332222 225666678899999999 777643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.00072 Score=60.04 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37888999999999999999765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.35 E-value=0.0053 Score=64.33 Aligned_cols=114 Identities=23% Similarity=0.272 Sum_probs=68.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE-EEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~ 212 (697)
.++-++.|.||.||||||+|..+...++... .. +.+.+ +++.....+. |... .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~---~~i~tiEd-PiE~~~~~~~---q~~v-------------------~ 209 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVED-PIEFDIDGIG---QTQV-------------------N 209 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEES-SCCSCCSSSE---EEEC-------------------B
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCC---ceEEEecc-CcccccCCCC---eeee-------------------c
Confidence 4677999999999999999999988654322 22 23321 1211111111 1000 0
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 213 ~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
. ..|+----+|..+|=++|++|+..|.. |..++...+ +.+..|..|+.|.|-.+ .....+|
T Consensus 210 ~---------~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 210 P---------RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp G---------GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred C---------CcCCCHHHHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhh
Confidence 0 001112334566778899999999987 666665544 45678999999999764 2334444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.31 E-value=0.00083 Score=62.05 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++||-|++|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986643
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.00074 Score=61.25 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
.+.|.||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999999876543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.00061 Score=63.04 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.24 E-value=0.005 Score=60.77 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..-+.|.||+|+|||+|.++|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 4447899999999999999999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.17 E-value=0.0013 Score=59.93 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+++|.|++||||||+++.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.06 E-value=0.0013 Score=61.36 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.05 E-value=0.0014 Score=61.00 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.02 E-value=0.082 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
...+++|.|..|.|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988643
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0014 Score=60.91 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..+.|+||||+|||||++.|....|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999987654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0013 Score=61.26 Aligned_cols=23 Identities=48% Similarity=0.795 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++|+||||||||||++.|+...|
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987655
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0021 Score=59.40 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.1
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
|=+.+|+++.|.||+|+|||||+.-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999877753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.002 Score=58.73 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.82 E-value=0.0017 Score=60.60 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.82 E-value=0.002 Score=58.49 Aligned_cols=22 Identities=55% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.0023 Score=59.68 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+-.++.|+||+||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.79 E-value=0.0014 Score=60.52 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.0021 Score=60.18 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++|+||||||||||++.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999976543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.76 E-value=0.0022 Score=61.29 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999997543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.74 E-value=0.0021 Score=58.76 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.73 E-value=0.0024 Score=58.50 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0024 Score=60.33 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0024 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.66 E-value=0.0029 Score=58.61 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+|=.+.|+||+||||||+.+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 5667889999999999999999954
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.63 E-value=0.0023 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0029 Score=58.69 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.59 E-value=0.0027 Score=58.07 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.003 Score=57.54 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.0028 Score=57.54 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.52 E-value=0.0029 Score=56.05 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.|.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.52 E-value=0.0031 Score=59.64 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++||.||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.51 E-value=0.0033 Score=57.58 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.50 E-value=0.003 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.49 E-value=0.0022 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.0032 Score=57.83 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-+||+|.+|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.42 E-value=0.0032 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++|+|.+|+|||||++.+.+...
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999988643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.0024 Score=58.63 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+||+|.+|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998853
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0042 Score=55.50 Aligned_cols=23 Identities=52% Similarity=0.741 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0043 Score=58.29 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.||+||||||+.+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999765
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.23 E-value=0.0045 Score=57.58 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.22 E-value=0.0043 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++.|.|++||||||+.+.|+.+++.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999987643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.21 E-value=0.0042 Score=60.24 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
...+.|.||+|||||||.++|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34588999999999999999999764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.21 E-value=0.0047 Score=56.81 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.0045 Score=56.81 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.17 E-value=0.06 Score=52.86 Aligned_cols=29 Identities=41% Similarity=0.570 Sum_probs=25.3
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+=++.|.++-|-||+|||||||+-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 45678999999999999999999877764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.017 Score=56.82 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=24.4
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+=+++|.++-|.||+|||||||+-.++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 45668999999999999999998666653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0027 Score=57.81 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0049 Score=56.45 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.92 E-value=0.0056 Score=54.99 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.|-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.90 E-value=0.0046 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.89 E-value=0.23 Score=46.56 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH-HHHHHcCCCc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPG 213 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l-~~~~~l~l~~ 213 (697)
++.+++++||+|+||||.+-=|+...... | ++++.+.-|..-. --.|-| .|+..++++-
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~----g-------------~kV~lit~Dt~R~---gA~eQL~~~a~~l~i~~ 64 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL----G-------------KKVMFCAGDTFRA---AGGTQLSEWGKRLSIPV 64 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT----T-------------CCEEEECCCCSST---THHHHHHHHHHHHTCCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC----C-------------CcEEEEEeccccc---cchhhHhhcccccCceE
Confidence 47799999999999998875566543321 1 2345444443222 223444 5677777764
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHH
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKL 267 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l 267 (697)
........+ -+.=+=.+..+-..+-+++|.|=|=. ..|.....++.++.+..
T Consensus 65 ~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~ 117 (207)
T d1okkd2 65 IQGPEGTDP--AALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAI 117 (207)
T ss_dssp ECCCTTCCH--HHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHH
T ss_pred EeccCCccH--HHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHh
Confidence 322222211 11111123344567889999996653 34555555544444433
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.88 E-value=0.062 Score=50.69 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=58.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
...+++++||+|+||||.+-=|+-.+... | ++++.+.-|..-. --+.+--.|+..++.+-.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~----g-------------~kV~lit~Dt~R~--gA~eQL~~~a~~l~v~~~ 69 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGK----G-------------RRPLLVAADTQRP--AAREQLRLLGEKVGVPVL 69 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT----T-------------CCEEEEECCSSCH--HHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC----C-------------CcEEEEecccccc--hHHHHHHHHHHhcCCccc
Confidence 35688999999999998887777554321 1 2244444332221 123333356666666644
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL-YHLDSVSALLMMV 262 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT-sgLD~~~~~~i~~ 262 (697)
....+..+.. -.+-++..+...+-+++|.|=|= +.-|.....++.+
T Consensus 70 ~~~~~~~~~~--~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~ 116 (207)
T d1ls1a2 70 EVMDGESPES--IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR 116 (207)
T ss_dssp ECCTTCCHHH--HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred cccccchhhH--HHHHHHHHHhhccCcceeecccccchhhhhhHHHHHH
Confidence 3333333222 22334445567888999999554 3344444444333
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.85 E-value=0.0063 Score=56.71 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+||+||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999653
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.78 E-value=0.0063 Score=56.27 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.0069 Score=55.60 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|+||.||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.70 E-value=0.045 Score=51.94 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=51.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+..+++++||+|+||||.+-=|+-+..... +.++.+.-|..-.. -+.+--.|+..++.+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~-----------------~kV~lit~Dt~R~g--A~eQL~~~a~~l~i~~~ 70 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG-----------------KSVVLAAADTFRAA--AIEQLKIWGERVGATVI 70 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT-----------------CCEEEEEECTTCHH--HHHHHHHHHHHHTCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCC-----------------CceEEEeecccccc--hhHHHHHHhhhcCcccc
Confidence 456899999999999987655554432111 22444433322111 22333345566665533
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
....+.++ -.-.+-..+.+...+-+++|.|=|=
T Consensus 71 ~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaG 103 (213)
T d1vmaa2 71 SHSEGADP--AAVAFDAVAHALARNKDVVIIDTAG 103 (213)
T ss_dssp CCSTTCCH--HHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred ccCCCCcH--HHHHHHHHHHHHHcCCCEEEEeccc
Confidence 22222221 2233445566677899999999553
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.0081 Score=56.86 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
=+.+|+++.|.||+|||||||+--++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 366999999999999999999977753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.60 E-value=0.0091 Score=56.66 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
+|-++-|.|.||||||||.+.|.-.+.... ..-.+.++|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchH
Confidence 688999999999999999999985432100 00345666654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.59 E-value=0.0025 Score=57.04 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|.+|+|||||++.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.57 E-value=0.0076 Score=55.37 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+||+|...||||||++.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.52 E-value=0.0074 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.51 E-value=0.0086 Score=56.01 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0062 Score=58.05 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++.+++|-|+-||||||+++.|+..++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.48 E-value=0.0081 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.011 Score=56.03 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++|-+++|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999987553
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.23 E-value=0.01 Score=53.35 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.0086 Score=60.96 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..-.+||.||+|||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 466799999999999999999986543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.014 Score=56.11 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+.|.||+|+||||++++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.02 E-value=0.013 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887544
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.99 E-value=0.032 Score=52.90 Aligned_cols=50 Identities=6% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 235 ELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
..+.+.++|++|+--.= =+...+..+..++.++.+.|+.+|+++..+..+
T Consensus 93 ~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 93 NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchh
Confidence 34678999999987442 247788889999999999999999988877644
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.013 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|.+++|-|+-||||||+++.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.95 E-value=0.014 Score=54.96 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.1
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+=+.+|+++.|.|++|+|||||+.-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3477999999999999999999877654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.94 E-value=0.022 Score=56.22 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
=++.|.++-|.||+|+|||||+-.++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHH
Confidence 455899999999999999999755553
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.90 E-value=0.014 Score=54.92 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
++||.|+.||||||+++.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.013 Score=59.11 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~ 195 (697)
++||-|++||||||+.+.|..++.... ....+..+.+|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~---------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP---------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST---------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc---------------CCCceEEEeeeeeECC
Confidence 899999999999999999987764210 0123667778877765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.88 E-value=0.012 Score=59.20 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|+.-+.+.||+|+|||.|.|+|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456789999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.86 E-value=0.015 Score=55.35 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHH
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~ 157 (697)
+.+|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999999986543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.83 E-value=0.014 Score=55.48 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+|||||+++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.016 Score=55.15 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
=+.+|+++.|.|++|||||||.-.++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 366999999999999999999987763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.014 Score=55.71 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+.+.||+|+||||+.++|+.-+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999997643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.77 E-value=0.013 Score=61.20 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+||+|.+|+|||||+|+|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.76 E-value=0.014 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.74 E-value=0.015 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.69 E-value=0.013 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++++|++|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.015 Score=52.33 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.52 E-value=0.016 Score=55.35 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+.||+|+|||||.++|++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.022 Score=53.95 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999977653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.089 Score=49.72 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=55.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH-HHHHHcCCCcc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGF 214 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l-~~~~~l~l~~~ 214 (697)
-.+++++||+|+||||.+-=|+-++... | +.++.+.-|..-.. -.|-| .|+..++++-.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~----g-------------~kV~lit~Dt~R~g---A~eQL~~~a~~l~v~~~ 68 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQ----G-------------KSVMLAAGDTFRAA---AVEQLQVWGQRNNIPVI 68 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTT----T-------------CCEEEECCCTTCHH---HHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC----C-------------CcEEEEeccccccc---chhhhhhhhhhcCCccc
Confidence 3589999999999998876666554321 1 23455444332211 23444 56677777654
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLK 265 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~ 265 (697)
....+.++..=-++ .+..+-..+-+++|.|=|=. ..|.....++.++.+
T Consensus 69 ~~~~~~d~~~~l~~--~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~ 118 (211)
T d2qy9a2 69 AQHTGADSASVIFD--AIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVR 118 (211)
T ss_dssp CCSTTCCHHHHHHH--HHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHH--HHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHH
Confidence 33333332111111 11123356789999995431 234444444444333
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.37 E-value=0.01 Score=59.22 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++||-|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.37 E-value=0.018 Score=51.59 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.019 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987664
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.20 E-value=0.017 Score=58.56 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=40.0
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe----cChHHHHhccCEEEEEe
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN----QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih----~~~~~i~~~~D~v~vL~ 296 (697)
+..+|.+.+-.=||.|-...-.....+.+.-+...|.-+|++-+ |...++..++|..+++-
T Consensus 108 ~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~ 172 (323)
T d2qm8a1 108 LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 172 (323)
T ss_dssp GGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred HhcccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEe
Confidence 34567777777777777777777777777666655655555432 44556777788777664
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.019 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999997753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.022 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++||.|+.||||||.++.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999999744
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.022 Score=51.20 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.021 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|-||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.023 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.10 E-value=0.022 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.06 E-value=0.046 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.|.-+.|.|+||+|||||.-.|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999999999999988764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.02 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.023 Score=51.36 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.022 Score=51.43 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999987653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.026 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.029 Score=50.68 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.80 E-value=0.029 Score=53.55 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
...+.|.||+|+||||+++.|+..++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999987653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.025 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|.+|+|||||++.+.+-.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999887753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.023 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.67 E-value=0.026 Score=51.49 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.53 E-value=0.029 Score=50.03 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|..|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.026 Score=50.36 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.038 Score=49.98 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.029 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.47 E-value=0.048 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.|.=+.|.|+||+|||||.-.|..+
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 5777999999999999999887654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.46 E-value=0.037 Score=50.02 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+||.+++|-|+=|||||||.|.++.-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 589999999999999999999998654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.37 E-value=0.019 Score=52.36 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998854
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.34 E-value=0.034 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.034 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999887544
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.24 E-value=0.033 Score=49.96 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++|+|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.032 Score=50.58 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=0.034 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|-||+|+||||++++|+.-+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998643
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.11 E-value=0.018 Score=58.14 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
-+.|+||.|+|||||+|.+++++|+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4789999999999999999999876
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.05 E-value=0.031 Score=51.61 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.036 Score=49.70 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.033 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999888764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.035 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.76 E-value=0.025 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=8.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.039 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|.+|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999887764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.71 E-value=0.027 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-+.|+|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.041 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999976653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.64 E-value=0.039 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+|||+|+++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.043 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.039 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++-+.+-
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.045 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++++|.+|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988843
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.32 E-value=0.07 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.|.=+.|.|+||+|||||.-.|..+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 5778999999999999998777654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.29 E-value=0.047 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|-||+|+||||++++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999998753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.24 E-value=0.049 Score=49.02 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998776
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.049 Score=48.90 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.03 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.17 E-value=0.042 Score=52.36 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=27.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.+.+++++||.-. |....+..+.+.+.+.. ....+|++++++.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 3567999999864 77777777666665432 2345677776653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.11 E-value=0.036 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35567999999999999999765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.00 E-value=0.052 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.97 E-value=0.064 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.75 E-value=0.056 Score=49.36 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 005423 139 TVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~ 157 (697)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999884
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.059 Score=49.02 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++++|.+|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999977664
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.47 E-value=0.049 Score=57.41 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+.++||+|+|||-|.|.||+.+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.065 Score=53.13 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.4
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.+-+|+..+|+|++|+|||||+..|+.-
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 3447999999999999999999988863
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.055 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.059 Score=49.22 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999988765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.067 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.15 E-value=0.06 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999963
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.97 E-value=0.068 Score=52.95 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.069 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|.+|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999777653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.088 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44568899999999999999999765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.58 E-value=0.079 Score=50.02 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 005423 138 MTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~ 157 (697)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999998774
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.47 E-value=0.077 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+||+|.+-+|||||+++|+|-..
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC---
T ss_pred EeEECCCCCCHHHHHHHHHCCCC
Confidence 79999999999999999998643
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.46 E-value=0.092 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999965
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.39 E-value=0.082 Score=48.03 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999976654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.79 E-value=0.085 Score=52.25 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.25 E-value=0.12 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=25.1
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.++..+.+.||+|+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999998753
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.86 E-value=0.13 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+++|=|+-||||||+++.|+-.++
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3789999999999999999997654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.86 E-value=0.12 Score=48.26 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 005423 139 TVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G 158 (697)
+||+|..++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.44 E-value=0.12 Score=50.47 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 005423 139 TVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~ 157 (697)
+||+|..|+|||||...|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 6999999999999999994
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.26 E-value=0.13 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.|+|.+|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.13 E-value=0.18 Score=46.82 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
-+||+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.89 E-value=0.15 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|..|+|||||++-+..-
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 689999999999999887654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.46 E-value=0.16 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.-.+.+.||+|+|||.|.++|++..
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHh
Confidence 3356678999999999999999864
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=0.14 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++.|-|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.17 E-value=0.16 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHH---HcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAI---AGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L---~G~~~ 161 (697)
+||+|..|||||||...| +|...
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 799999999999999988 45543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.05 E-value=0.17 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+||+|-+-+|||||+++|++-.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~ 27 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI 27 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC-
T ss_pred eEEEECCCCCCHHHHHHHHHCCCC
Confidence 479999999999999999998643
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.26 E-value=0.66 Score=47.50 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhC-CC-EEEEeCCCCCCCHHH---HHHHHHHHHHHHHcC-CEEEEEEec
Q 005423 226 ERRRVRIARELVMR-PH-VLFIDEPLYHLDSVS---ALLMMVTLKKLASTG-CTLLFTINQ 280 (697)
Q Consensus 226 qrqRv~IA~aL~~~-P~-iLlLDEPTsgLD~~~---~~~i~~~L~~l~~~g-~tvi~tih~ 280 (697)
|.+-..|...+... ++ ||++||--+=++... ...+.++|+-.-..| ..+|.+++.
T Consensus 100 e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~ 160 (387)
T d1qvra2 100 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL 160 (387)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred HHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCH
Confidence 33444666666554 33 689999988776432 356678888765444 667776653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.16 E-value=0.25 Score=48.44 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.+-+|+..+|+|++|+|||||+.-++.
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 455899999999999999999777753
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.53 E-value=0.21 Score=51.49 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=17.4
Q ss_pred cEEEEECCCCCcHHHHHHHHH
Q 005423 137 TMTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~ 157 (697)
.-+.|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 348999999999999987543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.59 E-value=0.28 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 48889999999999999998754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.30 E-value=0.29 Score=46.43 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
.+|+|+||.=. |+..++..+++.|.+-. .+..+|++++++..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 46999999854 77777766666554322 34566666666543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.23 E-value=0.3 Score=48.75 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 44467899999999999999999865
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.52 E-value=0.32 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
-..|+||+|.|||+++.-|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999998754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.18 E-value=0.33 Score=44.93 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.99 E-value=0.33 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+.++||+|+|||-|.|.|+....
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeeeCCCCccHHHHHHHHHhhcc
Confidence 56779999999999999998753
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.54 E-value=0.33 Score=48.16 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=17.3
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLL 153 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl 153 (697)
.|++..+.|-||+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5899999999999999964
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.26 E-value=0.4 Score=44.45 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=56.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccccc
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~ 218 (697)
..|+||+|.|||++..-|+.++.. |++ +.....+. ++ .+++..-+. +
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~~-----~~v-----p~~L~~~~---------i~-~ld~~~LiA-----g-------- 92 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRIIN-----GEV-----PEGLKGRR---------VL-ALDMGALVA-----G-------- 92 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH-----TCS-----CGGGTTCE---------EE-EECHHHHHT-----T--------
T ss_pred eEEEecCCcccHHHHHHHHHHHHh-----CCC-----CHHHcCce---------EE-EeeHHHHhc-----c--------
Confidence 689999999999999999987532 211 00000011 11 122221110 0
Q ss_pred CCCCCHHHHHHH-HHHHHHhhC-CC-EEEEeCCCCCCCHHHH---HHHHHHHHHHHHcC-CEEEEEEe
Q 005423 219 KNGLPCGERRRV-RIARELVMR-PH-VLFIDEPLYHLDSVSA---LLMMVTLKKLASTG-CTLLFTIN 279 (697)
Q Consensus 219 ~~~LSGGqrqRv-~IA~aL~~~-P~-iLlLDEPTsgLD~~~~---~~i~~~L~~l~~~g-~tvi~tih 279 (697)
...-|+-.+|+ .+-.++... ++ ||++||.-+=++.... ..+.++|+-.-..| ..+|.+++
T Consensus 93 -~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT 159 (195)
T d1jbka_ 93 -AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp -TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEEC
T ss_pred -CCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCC
Confidence 01123444555 466666544 34 8899999877665443 24567777665555 45555443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.40 E-value=0.35 Score=48.13 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=17.2
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLL 153 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl 153 (697)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999973
|