Citrus Sinensis ID: 005433

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR
ccccHHHHHHHHHHHHHEEEcccccEEEEEEccccccccccccccccccccEEEcccccccEEEEEEccccEEEEEccccccccccccccEEEEEEccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEccEEEEEEcccccccccccccccccccccEEEEEEEEEEcEEEcccEEEEEEEEEEcccccccccccHHcccccccHHHHcccccccccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEEccccccEEEEEcccccccccEEEEEEcccccccEEEEcccccccccccccccccccccccccccccEEEccEEEEccccccccccccccEEEEEcccEEEEEcccccccccEEEEEEcccccccccccccccccccEEEccEEEEEEcccccccEEEEEEcEEEEEEcccccEEEEEEcccccccccEEEEccccccccEEEEcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHEEEccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHcccccccccccccccccEEEEcccccccEEEEEccccEEEEEcccccccccccccccEEEEEcccccccEccccccEEEEEccccccccccccccEEEEEEEEcccEEEEEcccHHHHHHHHHHHcccccccEEEEEEEEEccEccccccEEEEEEEEEEccccccccccccccccHHHHHHHcccHHHHHccccccccccccEEEEEEEcccccEEEEEcccccccccccHHcccccccccccHHHHcccccccccHHHHHHHHHHHccccccccccccEEHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccEEEEEEccccccEEEcccccEEEEEEEEEcccccEEccccccccccccEEEEEcccccHHHHccccccccccccccccccccccccccccccccEEccccEEEcccccccccccccEEEEEEcccEEEEEccccccccEEEEEEEEcccccccccccccccccccccccEEEEEccccccccEEEEEcccEEEEEcccccEEEEEEccccccccEEEEEcccccccEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHlseeypikfdadrlpppivadlngdgrKEVLVATHDAkiqvlepharrvdeGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVidrtyrqgqplKQVLVVVTSGWSVMCFDHNLNKLWEanlqedfppnahhREIAISISnytlkhgdtglvivggrmemqphtimdpfeeiGLAEKNAEQHRRsasekeasensgtvdlrHFAFYAFAGrsgllrwsrknenieaqptdasqlipqhnykldvhalnsrhpgefecREFRESvlgvmphhwdrrEDTLLKLSHFRRHKRKILKKVVgkstsypfhkpeehhppgkdstkKISNLIGKAATyagsakskkpvnyiptitnytqlwwvpNVVVAHQKEGIEAVHLASGRTVCKLHLqegglhadingdgVLDHVqavggngaeqtvvsgsmevlrpcwavatsgvpvreqlfnasichhspfnlfphgefsrnfgrtsdvaslevatpiliprsdghrhrkgshgdvvfltnrgevtayspglhghdAIWQWQLLtdatwsnlpspsgmteastvvptlkafslRVHDNQQMilaggdqeavvispggsiltsidlpappthalvcedfsndgltdVILMTSNGvygfvqtrqpgaLFFSTLVGCLIVVMGVIFVTQHlnsvkakprassglr
MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHdakiqvlepharrVDEGFSEARVLaevsllpdkiriasgrRAVAMATGvidrtyrqgqplKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHRRSasekeasensgtvdLRHFAFYAFAGRSGLLRWSRKNENIEAqptdasqlipqHNYKLDVHALNSRHPGEFECREFRESVLgvmphhwdrREDTLlklshfrrhkrkilkkvvgkstsypfhkpeehhppgkdsTKKISNLIGKAAtyagsakskkpvnYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPIliprsdghrhrkgshgdvVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTqhlnsvkakprassglr
MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR
*****LAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIM*******************************VDLRHFAFYAFAGRSGLLRWSR**************LIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVV********************************ATY*******KPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIP***********HGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNL*********STVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLN*************
*RKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGL*************************LRHFAFYAFAGRSGLLRWSRKNE************I****************PGEFECREFRESVLGVMPHHWDRREDTLLKLS******************************************I************************YTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVG*************EVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEF*************EVATPILI**********GSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATW*************TVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIF*******************
MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEK******************GTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHK***********TKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLP*********TVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHL**************
*RKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTI*****************R***************DLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRK*************************************************PVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLN*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
359476651696 PREDICTED: uncharacterized protein LOC10 0.998 1.0 0.879 0.0
255585207 1050 aldehyde dehydrogenase, putative [Ricinu 0.967 0.641 0.902 0.0
224134190693 predicted protein [Populus trichocarpa] 0.992 0.998 0.862 0.0
224094889679 predicted protein [Populus trichocarpa] 0.972 0.998 0.835 0.0
356496701697 PREDICTED: uncharacterized protein LOC10 0.998 0.998 0.826 0.0
356538246693 PREDICTED: uncharacterized protein LOC10 0.994 1.0 0.822 0.0
449464520686 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.981 0.997 0.829 0.0
297816364698 FG-GAP repeat-containing protein [Arabid 0.998 0.997 0.803 0.0
22331734698 FG-GAP repeat-containing protein [Arabid 0.998 0.997 0.800 0.0
18087608698 AT3g51050/F24M12_90 [Arabidopsis thalian 0.998 0.997 0.799 0.0
>gi|359476651|ref|XP_002273723.2| PREDICTED: uncharacterized protein LOC100264247 [Vitis vinifera] gi|297735064|emb|CBI17426.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1302 bits (3369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/697 (87%), Positives = 659/697 (94%), Gaps = 1/697 (0%)

Query: 1   MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDG 60
           MRKRDLAILMLSAFAIFFSLQHEGDFSF+EAWFHLS+EYPIK++A+RLPPP+VADLNGDG
Sbjct: 1   MRKRDLAILMLSAFAIFFSLQHEGDFSFKEAWFHLSDEYPIKYEAERLPPPLVADLNGDG 60

Query: 61  RKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVID 120
           +KEVLVATHDAKIQVLEPHARRVDEGFSEARVL EVSLLPDKIRI+SGRRAVAMATGV+D
Sbjct: 61  KKEVLVATHDAKIQVLEPHARRVDEGFSEARVLVEVSLLPDKIRISSGRRAVAMATGVVD 120

Query: 121 RTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLK 180
           R Y+QGQP KQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFP NAHHREIAISISNYTLK
Sbjct: 121 RHYKQGQPQKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPHNAHHREIAISISNYTLK 180

Query: 181 HGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAF 240
           HGD GLVIVGGRMEM PH  MDPFE IG+ EKNAEQHRRSA+EKEASEN+GTVDLRHFAF
Sbjct: 181 HGDAGLVIVGGRMEMLPHIYMDPFEVIGMTEKNAEQHRRSANEKEASENAGTVDLRHFAF 240

Query: 241 YAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVL 300
           YAFAGRSG +RW RKNENI+   +DASQLIPQHNYKLD HALN+RHPGEFECREFRES+L
Sbjct: 241 YAFAGRSGAVRWMRKNENIQTLSSDASQLIPQHNYKLDAHALNTRHPGEFECREFRESIL 300

Query: 301 GVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNL 360
           GVMPHHWDRREDTLLKL+HFRRHKRK LKK  GKST+YPFHKPEE+HPPGKD TKKISNL
Sbjct: 301 GVMPHHWDRREDTLLKLAHFRRHKRKTLKKTQGKSTNYPFHKPEENHPPGKDDTKKISNL 360

Query: 361 IGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHL 420
           IGKAA YA SAKSKKP+ Y+PTITNYTQLWWVPNVVVAHQ+EGIEAVHL +GRT+CKLHL
Sbjct: 361 IGKAAKYASSAKSKKPLPYVPTITNYTQLWWVPNVVVAHQREGIEAVHLPTGRTICKLHL 420

Query: 421 QEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASI 480
           QEGGLHADINGDGVLDHVQ VGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASI
Sbjct: 421 QEGGLHADINGDGVLDHVQVVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASI 480

Query: 481 CHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEV 540
           CHHSPFNLF HGEFSR+F RT D+ SLEVATPILIPR+DGHRHRKGSHGD++FLTNRGEV
Sbjct: 481 CHHSPFNLFQHGEFSRSFSRTPDLGSLEVATPILIPRNDGHRHRKGSHGDIIFLTNRGEV 540

Query: 541 TAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG 600
           T+YSPGLHGHDAIWQWQLLT ATWSNLPSPSGM E S VVPTLKAFSLR HDN+++ILA 
Sbjct: 541 TSYSPGLHGHDAIWQWQLLTGATWSNLPSPSGMME-SMVVPTLKAFSLRAHDNRELILAA 599

Query: 601 GDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGA 660
           GDQEA+++SPGGS+LTS++LPA PTHAL+CEDFSNDGLTD+IL+TSNGVYGFVQTRQPGA
Sbjct: 600 GDQEAIMMSPGGSLLTSVELPAAPTHALICEDFSNDGLTDLILVTSNGVYGFVQTRQPGA 659

Query: 661 LFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR 697
           LFFSTLVGCLIVVMGVIFVTQ+LNS+K KPRASSG R
Sbjct: 660 LFFSTLVGCLIVVMGVIFVTQYLNSMKGKPRASSGPR 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585207|ref|XP_002533306.1| aldehyde dehydrogenase, putative [Ricinus communis] gi|223526871|gb|EEF29083.1| aldehyde dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224134190|ref|XP_002327778.1| predicted protein [Populus trichocarpa] gi|222836863|gb|EEE75256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224094889|ref|XP_002310280.1| predicted protein [Populus trichocarpa] gi|222853183|gb|EEE90730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496701|ref|XP_003517204.1| PREDICTED: uncharacterized protein LOC100787497 [Glycine max] Back     alignment and taxonomy information
>gi|356538246|ref|XP_003537615.1| PREDICTED: uncharacterized protein LOC100789851 [Glycine max] Back     alignment and taxonomy information
>gi|449464520|ref|XP_004149977.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223217 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816364|ref|XP_002876065.1| FG-GAP repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321903|gb|EFH52324.1| FG-GAP repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22331734|ref|NP_190674.2| FG-GAP repeat-containing protein [Arabidopsis thaliana] gi|332645222|gb|AEE78743.1| FG-GAP repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18087608|gb|AAL58934.1|AF462847_1 AT3g51050/F24M12_90 [Arabidopsis thaliana] gi|24797020|gb|AAN64522.1| At3g51050/F24M12_90 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
TAIR|locus:2080988698 AT3G51050 "AT3G51050" [Arabido 0.995 0.994 0.803 0.0
DICTYBASE|DDB_G0275747799 DDB_G0275747 "FG-GAP repeat-co 0.542 0.473 0.302 2.4e-60
TAIR|locus:2080988 AT3G51050 "AT3G51050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3059 (1081.9 bits), Expect = 0., P = 0.
 Identities = 559/696 (80%), Positives = 634/696 (91%)

Query:     1 MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSEEYPIKFDADRLPPPIVADLNGDG 60
             MRKRDLAILMLS FAIFF+LQHEGDF+F+EAWFHL +EYP+K++ADRLPPPIVADLNGDG
Sbjct:     1 MRKRDLAILMLSGFAIFFTLQHEGDFAFKEAWFHLYDEYPVKYEADRLPPPIVADLNGDG 60

Query:    61 RKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVID 120
             +KEVLVAT+DAKIQVLEPH+RRVDEGFSEARVLAE++LLPDKIR+ASGRRAVAMATGVID
Sbjct:    61 KKEVLVATNDAKIQVLEPHSRRVDEGFSEARVLAEITLLPDKIRVASGRRAVAMATGVID 120

Query:   121 RTYRQGQPLKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLK 180
             R Y+ G P KQV+VVVTSGWSV+CFDHNL KLWE NLQEDFP NAHHREIAISISNYTLK
Sbjct:   121 RYYKNGTPQKQVVVVVTSGWSVLCFDHNLKKLWETNLQEDFPHNAHHREIAISISNYTLK 180

Query:   181 HGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAF 240
             HGDTGLVIVGGRMEMQP+  MDPFEE+G+  +NA+QHRRSA+E +ASE+SG ++LRHF+ 
Sbjct:   181 HGDTGLVIVGGRMEMQPYNHMDPFEELGMTAQNADQHRRSATENQASEDSGAINLRHFSV 240

Query:   241 YAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVL 300
             YAFAG++GLLRWS+K +++EA  +DASQLIPQHNYKLDVHALNSRHPGEFECREFRES+L
Sbjct:   241 YAFAGKTGLLRWSKKTDDVEAHTSDASQLIPQHNYKLDVHALNSRHPGEFECREFRESIL 300

Query:   301 GVMPHHWDRREDTLLKLSHFRRHKRKILKKVVG-KSTSYPFHKPEEHHPPGKDSTKKISN 359
              VMPH WDRREDTLLKL+HFRRHKRK LKK  G KST+YPFHKPEEH P GKD ++KI  
Sbjct:   301 SVMPHRWDRREDTLLKLAHFRRHKRKTLKKQAGSKSTAYPFHKPEEHTPAGKDLSRKIPK 360

Query:   360 LIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLH 419
             LIGKAA YAGSAK KK + YIPTITNYT+LWWVPNVVVAHQKEGIEA+HL +GRT+CKL 
Sbjct:   361 LIGKAARYAGSAKPKKGMQYIPTITNYTKLWWVPNVVVAHQKEGIEAIHLPTGRTLCKLS 420

Query:   420 LQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNAS 479
             L EGGLHADINGDGVLDHVQ VGGN  E+TVVSGSMEVL+PCWAVATSGVP+REQLFN S
Sbjct:   421 LLEGGLHADINGDGVLDHVQTVGGNVGERTVVSGSMEVLKPCWAVATSGVPIREQLFNVS 480

Query:   480 ICHHSPFNLFPHG-EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRG 538
             ICHHSPFN   +G ++SR+F +  D ++LE+ATPILIPR DGH+HRKGSHGDV+FLTNRG
Sbjct:   481 ICHHSPFNFLHYGGDYSRHFAQARDTSTLEIATPILIPRDDGHKHRKGSHGDVIFLTNRG 540

Query:   539 EVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMIL 598
             EVT+Y+P +HGHDA+WQWQL T+ATWSNLPSPSG+TE+ TVVPTLK FSLR+HDNQ MIL
Sbjct:   541 EVTSYTPDVHGHDAVWQWQLQTEATWSNLPSPSGLTESGTVVPTLKPFSLRIHDNQPMIL 600

Query:   599 AGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQP 658
             AGGDQ AV+ISPGGSIL SI+LP+ PTHAL+ +DFSNDGLTDVI+MTSNGVYGFVQTRQP
Sbjct:   601 AGGDQAAVIISPGGSILASIELPSQPTHALITDDFSNDGLTDVIVMTSNGVYGFVQTRQP 660

Query:   659 GALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASS 694
             GALFFS+LVGCL+VVM VIFVTQHLNS++ KPR SS
Sbjct:   661 GALFFSSLVGCLLVVMAVIFVTQHLNSIQGKPRPSS 696
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0007160 "cell-matrix adhesion" evidence=ISS
GO:0008305 "integrin complex" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0275747 DDB_G0275747 "FG-GAP repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00570132
hypothetical protein (693 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 697
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.7
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 97.43
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.95
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 96.75
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 95.38
PF0183934 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re 94.76
PF14781136 BBS2_N: Ciliary BBSome complex subunit 2, N-termin 94.69
PF0183934 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re 94.49
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 94.27
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 94.21
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 92.95
PF0101138 PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 90.17
PF14782 431 BBS2_C: Ciliary BBSome complex subunit 2, C-termin 90.07
PF1351761 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi 90.0
TIGR03300 377 assembly_YfgL outer membrane assembly lipoprotein 89.89
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 89.8
PF1351761 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi 89.34
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 89.11
COG1520370 FOG: WD40-like repeat [Function unknown] 84.92
cd00216 488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 83.7
PF14779257 BBS1: Ciliary BBSome complex subunit 1 83.59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information 
Probab=97.70  E-value=0.0074  Score=64.82  Aligned_cols=94  Identities=15%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEe-ecceEEE
Q 005433          529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG-GDQEAVV  607 (697)
Q Consensus       529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~-Ge~~~~i  607 (697)
                      +.+++.+++|.|.|++..    ++..+|+...   +.      +  . ...-|.+.         ...|++. -+-.+.+
T Consensus       280 ~~vyv~~~~G~l~~~d~~----tG~~~W~~~~---~~------~--~-~~ssp~i~---------g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       280 NRLYVTDADGVVVALDRR----SGSELWKNDE---LK------Y--R-QLTAPAVV---------GGYLVVGDFEGYLHW  334 (377)
T ss_pred             CEEEEECCCCeEEEEECC----CCcEEEcccc---cc------C--C-ccccCEEE---------CCEEEEEeCCCEEEE
Confidence            346667789999999974    3478888521   00      0  0 11112211         1233333 3445777


Q ss_pred             EcC-CCCEEEEEeCCCC-CCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433          608 ISP-GGSILTSIDLPAP-PTHALVCEDFSNDGLTDVILMTSNG-VYGFV  653 (697)
Q Consensus       608 ls~-~G~vl~s~~Lp~p-P~ap~iv~DfngDG~nDiIVvT~~G-iygfv  653 (697)
                      +|+ +|+++.+.+++.. -.+.|++.|      +-|+|.|.+| +|+|.
T Consensus       335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~------~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       335 LSREDGSFVARLKTDGSGIASPPVVVG------DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             EECCCCCEEEEEEcCCCccccCCEEEC------CEEEEEeCCceEEEeC
Confidence            886 8999999999884 366667666      3499999999 88873

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins Back     alignment and domain information
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal Back     alignment and domain information
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF01011 PQQ: PQQ enzyme repeat family Back     alignment and domain information
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal Back     alignment and domain information
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF14779 BBS1: Ciliary BBSome complex subunit 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 8e-05
 Identities = 55/400 (13%), Positives = 108/400 (27%), Gaps = 118/400 (29%)

Query: 4   RDLAILMLSAFAIFF-----------------SLQHEGDFSFREAWFHLSEEYPIKFDA- 45
               +     F IF+                  L ++ D ++     H S    ++  + 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSI 230

Query: 46  -DRL-------PPP---IVAD-------LNG-DGRKEVLVATHDAKI--QVLEPHARRV- 83
              L       P     +V          N  +   ++L+ T   ++   +       + 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 84  ----DEGFSEARVLAEVSLLPDKIRIASG---RRAVA---MATGVIDRTYRQG----QPL 129
                   +   V    SLL   +        R  +        +I  + R G       
Sbjct: 291 LDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 130 KQVLVVVTSGWSV-MCFDHNLNKLWEANLQED------FPPNAHHREIAISISNYTLKHG 182
           K V         +    + +LN L  A  ++       FPP+AH   I   +        
Sbjct: 348 KHVNC-----DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTIL-------- 391

Query: 183 DTGLVIVGGRMEMQ-PHTIMDPFEEIGLAEKNAEQHRRS-----ASEKEASENSGTVDLR 236
              L ++   +       +++   +  L EK  ++   S        K   EN   +   
Sbjct: 392 ---LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 237 HFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQH-NYKLDVHALNSRHPGEFECREF 295
               Y        +  +  ++++     D  Q    H  +    H  N  HP       F
Sbjct: 449 IVDHYN-------IPKTFDSDDLIPPYLD--QYFYSHIGH----HLKNIEHPERMT--LF 493

Query: 296 RESVL------------GVMPHHWDRREDTLLKLSHFRRH 323
           R   L                +      +TL +L  ++ +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 96.57
2zuy_A620 YESX protein; beta-propeller, lyase; 1.65A {Bacill 96.4
2zux_A591 YESW protein; beta-propeller, lyase, rhamnose comp 95.14
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 94.44
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 91.06
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 90.9
2zux_A 591 YESW protein; beta-propeller, lyase, rhamnose comp 90.87
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 89.27
2zuy_A 620 YESX protein; beta-propeller, lyase; 1.65A {Bacill 88.09
1w6s_A 599 Methanol dehydrogenase subunit 1; anisotropic, ele 87.82
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 87.74
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 86.88
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 84.74
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 83.03
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 82.95
2bwr_A 401 Psathyrella velutina lectin; N-acetyl-glucosamine; 82.53
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 82.46
2ad6_A 571 Methanol dehydrogenase subunit 1; PQQ configuratio 82.46
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 80.63
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
Probab=96.57  E-value=0.59  Score=53.19  Aligned_cols=84  Identities=19%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEc-CCCCEE
Q 005433          537 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS-PGGSIL  615 (697)
Q Consensus       537 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~~G~vl  615 (697)
                      .|.|+++|+.    .++.+|+...+..+..     |         .+.     ..+ .-++++..+..+.++| .+|+++
T Consensus       456 ~g~l~A~D~~----tG~~~W~~~~~~~~~~-----g---------~~~-----~~g-~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          456 FGRLLAWDPV----AQKAAWSVEHVSPWNG-----G---------TLT-----TAG-NVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEEEEEEETT----TTEEEEEEEESSSCCC-----C---------EEE-----ETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEEEeCC----CCcEEeecCCCCCCcC-----c---------ceE-----eCC-CEEEEECCCCcEEEEECCCCcee
Confidence            3999999975    2389999887643211     0         011     111 1233445567888999 599999


Q ss_pred             EEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 005433          616 TSIDLPAPPTHALVCEDFSNDGLTDVILMTS  646 (697)
Q Consensus       616 ~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~  646 (697)
                      -++.+|+...+.|+.-  .-||...+++.+-
T Consensus       512 w~~~~~~~~~~~p~~y--~~~G~~~v~~~~G  540 (677)
T 1kb0_A          512 WEAPTGTGVVAAPSTY--MVDGRQYVSVAVG  540 (677)
T ss_dssp             EEEECSSCCCSCCEEE--EETTEEEEEEEEC
T ss_pred             eeeeCCCCcccCCEEE--EeCCEEEEEEecc
Confidence            9999999888888875  5677777766544
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 95.59
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.89
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.13
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 86.42
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 84.11
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.052  Score=58.04  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=48.7

Q ss_pred             cCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEE-eecceEEEEc-CCCC
Q 005433          536 NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA-GGDQEAVVIS-PGGS  613 (697)
Q Consensus       536 s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA-~Ge~~~~ils-~~G~  613 (697)
                      ..|.|++++..-    ++.+||...+..+.     +|.         |+     ..+  -+|.+ ..+..+--+| .+|+
T Consensus       464 ~~G~l~AiD~~T----G~i~W~~~~~~p~~-----~g~---------ls-----tag--glVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         464 HVGSLRAMDPVS----GKVVWEHKEHLPLW-----AGV---------LA-----TAG--NLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             CSEEEEEECTTT----CCEEEEEEESSCCC-----SCC---------EE-----ETT--TEEEEECTTSEEEEEETTTCC
T ss_pred             CCCeEEEEcCCC----CcEEeecCCCCCCc-----cce---------eE-----EcC--CeEEEeCCCCeEEEEECCCCc
Confidence            469999999753    48999987654321     111         11     001  12222 3355677788 5999


Q ss_pred             EEEEEeCCCCCCcccEEeecC
Q 005433          614 ILTSIDLPAPPTHALVCEDFS  634 (697)
Q Consensus       614 vl~s~~Lp~pP~ap~iv~Dfn  634 (697)
                      +|=+++||.+..++||.=..|
T Consensus       519 ~LW~~~~~~~~~~~P~ty~~~  539 (582)
T d1flga_         519 ELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             EEEEEECSSCCCSCCEEEEET
T ss_pred             EeEEEECCCCccccCEEEEEC
Confidence            999999999999999875443
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure