Citrus Sinensis ID: 005434

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
Protein Sequence
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPDS
Secondary Structure (PSIPRED)
ccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHcccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEcccc
Coil and Loop (DISEMBL)
MGPGLEISYWLTLrsgrchsfpsltsyqftESTHFLAKSLAMADVVQYRLERMVDELDDLerrglftrHEISEIVKQRRKFEyrlkrpsplkqdYLAYIEYESQLDALRRLRKKsigrdegreRRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRfhpkvpgvWIYAAAWEFDHNLNVTAARALMQnglrvcptsEELWVEYLRMELTYLNKLKARKValgedkgtlvrdhrdadekrwinenkglfmpldgeventdgsqpenmesqksVDLFREQGLRVLQTIYSGAvealpssfnLRQRFFEIVEatnlaqsddmHDKILSDMQRDFLVDPKYWDWLARLKmtdsvskdgtsedivpSQMQKAIQVYEEALknvpssmiFDLYTKFLMDmiapkkeetrdselpshVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRcvtrnsfspskADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVakdgggesgfslPSAIINLVIQKDGIQQAREMYKRFLalprpglvlyQNCIELENnlasvgdkdsLVNARKLFESALATYDQNTSLWRDYYSTetklgtseTATAVYWRARKTlkdstaltalpds
Flexible Loop (DISEMBL)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDlerrglftrheiseivkqrrkfeyrlkrpsplkqdylAYIEYESQLDALRRlrkksigrdegrerrvskkmkksvsdfsgvaRILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKArkvalgedkgtlvrdhrdadekrwinenkglfmplDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTdsvskdgtsedivpsQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKeetrdselpshVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCsgklsdsvqLWLLRISVEIrcvtrnsfspskaDILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLasvgdkdsLVNARKLFESAlatydqntsLWRDYYSTetklgtsetaTAVYWRARKtlkdstaltalpds
Low Complexity Region (SEG)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVskkmkksvsdfsGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPDS
Disordered region (IsUnstruct)
****LEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDAL****************************FSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVR********RWINENKGLF*************************LFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT*******************AIQVYEEALKNVPSSMIFDLYTKFLMDMIA*************HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKT*************
Disordered Region (DISOPRED)
***GLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTA***L***
Disordered Region (DISEMBL)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI*******************DFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPDS
Disordered Region (DISPRO)
*GPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV******************FMPLDG*VENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMxxxxxxxxxxxxxxxxxxxxxGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPDS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	697	2.2.26 [Sep-21-2011]
Q9NYH9	597	U3 small nucleolar RNA-as	yes	no	0.816	0.953	0.261	4e-43
Q8VCY6	597	U3 small nucleolar RNA-as	yes	no	0.812	0.948	0.256	2e-42
O60188	488	U3 small nucleolar RNA-as	yes	no	0.279	0.399	0.364	3e-32
Q02354	440	U3 small nucleolar RNA-as	yes	no	0.282	0.447	0.342	7e-31
Q54WN5	609	U3 small nucleolar RNA-as	yes	no	0.602	0.689	0.238	7e-21

>sp|Q9NYH9|UTP6_HUMAN U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens GN=UTP6 PE=1 SV=2

 Score =  176 bits (447), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 173/662 (26%), Positives = 295/662 (44%), Gaps = 93/662 (14%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY+++R +  K+D++ Y++Y
Sbjct: 1   MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L  L + R+  IG             KK   + S V R+  +++ A  ++K D++LW
Sbjct: 61  EINLLELIQRRRTRIGYS----------FKKDEIENSIVHRVQGVFQRASAKWKDDVQLW 110

Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
             Y+ FC++     R+ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct: 111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280
             P   +L+ EY RMEL +  KL+  K     +K ++                       
Sbjct: 171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASM----------------------- 205

Query: 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT 340
             +VEN D S+ E ++ +            +   IY  +V  +  +         I +  
Sbjct: 206 --DVENPDYSE-EILKGE------------LAWIIYKNSVSIIKGA-EFHVSLLSIAQLF 249

Query: 341 NLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDI----VPSQMQ 394
           + A+  D+  +I  D+Q     DP  WD++AR  L++     +  T++      V  + +
Sbjct: 250 DFAK--DLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVGRKEE 307

Query: 395 KAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454
           +   VYEEA+K +P+  ++  Y  F ++        T+ S         +   +TV+ KA
Sbjct: 308 RCCAVYEEAVKTLPTEAMWKCYITFCLERF------TKKSNSGFLRGKRLERTMTVFRKA 361

Query: 455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN 514
             +  L+E    +     L    L EA ++A    +    DS  +W L++ V I      
Sbjct: 362 HELKLLSECQYKQLSVSLLCYNFLREALEVAVA-GTELFRDSGTMWQLKLQVLI-----E 415

Query: 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFD--KLVEIALISVA 572
           S SP   DI  +FE     L     L    LW+   ++    K   D   + + AL++V 
Sbjct: 416 SKSP---DIAMLFEEAFVHLKPQVCL---PLWISWAEWSEGAKSQEDTEAVFKKALLAVI 469

Query: 573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASV 631
               G    +L +  ++   +  G ++AR ++K  L   RP  V  ++  I+ E    S 
Sbjct: 470 ----GADSVTLKNKYLDWAYRSGGYKKARAVFKS-LQESRPFSVDFFRKMIQFEKEQESC 524

Query: 632 GDKDSLVNARKLFESALATY-DQNTSLWRDYYSTETK--LGTSETATAVYWRARKTLKDS 688
               ++ N R+ +E AL  +   ++ LW DY   E    LG  E    +YWRA K L+  
Sbjct: 525 ----NMANIREYYERALREFGSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGE 580

Query: 689 TA 690
           +A
Sbjct: 581 SA 582

Involved in nucleolar processing of pre-18S ribosomal RNA.
Homo sapiens (taxid: 9606)

>sp|Q8VCY6|UTP6_MOUSE U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus GN=Utp6 PE=2 SV=1

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 171/666 (25%), Positives = 298/666 (44%), Gaps = 100/666 (15%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY++ R + LK+D++ Y++Y
Sbjct: 1   MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L  L + R+           R+    KK   ++S V R+  ++  A  ++K D++LW
Sbjct: 61  EINLLELIQRRRA----------RIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110

Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
             Y+ FC++      + K+ + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct: 111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280
             P   +L+ EY RMEL +  KL+  K     +K  +  D  D D    I         L
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEKQEF--EKAAM--DMGDFDHPEEI---------L 217

Query: 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT 340
            GE                           + + IY  ++  +  +         I +  
Sbjct: 218 KGE---------------------------LARIIYKNSISKIKGA-EFHVSLLAIAQLF 249

Query: 341 NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ-- 398
           + A+  D+  +I  D+Q     DP  WD++AR ++ +  S+ G  + +  S+  KA++  
Sbjct: 250 DFAK--DLQKEIYDDLQALHTDDPLTWDYVARREL-EIESQPGEEQPV--SKQAKAVEMG 304

Query: 399 --------VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450
                   VYEEA+K +P+  ++  Y  F ++  + K      S +P   +  +   +  
Sbjct: 305 RREERCCAVYEEAVKALPTEAMWKCYITFCLERFSKK-----TSSVPLRGQR-LERTMLA 358

Query: 451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510
           + KA  +  L+E    +++ L L+     EA ++ A+  +    DSV +W  ++ V I  
Sbjct: 359 FRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV-AEAGTELFKDSVTMWQTKLQVLI-- 415

Query: 511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFD--KLVEIAL 568
              +S SP   D+   FE     L     L    LW+   ++  + K   D   + + A+
Sbjct: 416 ---DSKSP---DVEMRFEEAFAHLKPQVCL---PLWISWAEWSESAKSQEDTEAIFKKAI 466

Query: 569 ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENN 627
           I+V     G S  +L    ++   +  G ++AR ++K  L   RP  V  ++  ++ E  
Sbjct: 467 IAVT----GASSVTLKEKYLDWAYRSGGYKKARAVFKS-LQESRPFSVEFFRKMMQFEKE 521

Query: 628 LASVGDKDSLVNARKLFESALATYDQNTS-LWRDYYSTETK--LGTSETATAVYWRARKT 684
                +   +VN R+ +E AL  +  + S LW DY   E     G  E    +YWRA K 
Sbjct: 522 ----QEPCKMVNLREYYERALREFGTSDSDLWMDYIKEELNHPFGKPENCGQIYWRAMKM 577

Query: 685 LKDSTA 690
           L+  +A
Sbjct: 578 LQGQSA 583

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|O60188|UTP6_SCHPO U3 small nucleolar RNA-associated protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp6 PE=3 SV=1

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 11/206 (5%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MA+ VQY +E+ V EL+DL  + +F R EI+ I+K RR FE +L R      D+L+YI+Y
Sbjct: 1   MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L+ LR            R +R++   K ++SD++G  ++L ++  A  +F GD+ LW
Sbjct: 61  EINLETLR----------AKRHKRLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLW 110

Query: 162 FKYMEFCRQRKNGRM-KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
             Y+ + ++ K   +  K+    ++ HP    +W+ A   EF  N NV+AARALM   LR
Sbjct: 111 LDYIHYAQKIKAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKAR 246
           +   +  +W  Y R+EL+Y+ KL AR
Sbjct: 171 LNQENPVIWAAYFRLELSYMTKLFAR 196

Component of the SSU processome, a pre-ribosomal particle required for the maturation of the 18S rRNA from the 35S pre-rRNA precursor.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q02354|UTP6_YEAST U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1 SV=2

 Score =  136 bits (342), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 116/210 (55%), Gaps = 13/210 (6%)

Query: 46  VQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQL 105
            +Y LE+ + E+DDL  +GLFT++E+S I+K+R  FE+RL        DY+ YI YES +
Sbjct: 4   TRYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYESNV 63

Query: 106 DALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYM 165
           + LR  R K I         +  K   S+SD+S   RI  IY+    +F  D++ W  Y+
Sbjct: 64  NKLRAKRCKRI---------LQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYL 114

Query: 166 EFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
            + + R N     ++  +  Q+++ HP    +WI  A +E++ + N  + R + QNGLR 
Sbjct: 115 NYMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRF 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALG 251
            P   +LW EY++ EL ++ KL  R+  +G
Sbjct: 175 NPDVPKLWYEYVKFELNFITKLINRRKVMG 204

Component of the SSU processome, a pre-ribosomal particle required for the maturation of the 18S rRNA from the 35S pre-rRNA precursor.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54WN5|UTP6_DICDI U3 small nucleolar RNA-associated protein 6 homolog OS=Dictyostelium discoideum GN=utp6 PE=1 SV=1

 Score =  102 bits (255), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 226/491 (46%), Gaps = 71/491 (14%)

Query: 44  DVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYES 103
           D V + ++++++E   L   G+ ++ E  +I+K+R   E ++   +  K D+L YI+YE 
Sbjct: 2   DRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYEL 61

Query: 104 QLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFK 163
           +LD  R   K+   ++   + R+   ++ ++  F            A  +F  D  LW  
Sbjct: 62  ELD--RLFHKRGKAKNIEFDYRLRSALRHAIILFGS----------ATKKFPKDEALWIN 109

Query: 164 YMEFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219
            +    +R +    GR+  +    +   P+   +W  AA +EF+ N N+  AR L+Q G+
Sbjct: 110 ALNIRMKRASKEGTGRLFSIALSNL---PRSAKLWKLAATFEFEVNKNIQNARNLIQAGI 166

Query: 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP 279
           +   T + LW  +  MELTY+                L  D    D+K    E + + + 
Sbjct: 167 QFNKTDKSLWHYFFLMELTYI--------------SLLFSDITFIDKKIEEEEEEAIKLN 212

Query: 280 LDG-----EVEN----TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVE-ALPSSFNL 329
           LD      ++E     T G +  + +  K   L R Q   + Q ++  A++ ++   F+ 
Sbjct: 213 LDSLRKSEKIEKDEFITFGKEILSADKLKQSSLIRGQ---IAQIVFRKAIKSSIGQDFDF 269

Query: 330 RQRFFEIV--------EATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS 380
           R+ F++I         ++ N +   + +  +IL  +  DF  D K + +LA      S+ 
Sbjct: 270 RKHFYKIASKFLDIGKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA------SIE 323

Query: 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSH 439
           +  +SE  +  ++  + ++  + L  + S S +F+ Y  F+  +I   K   ++++L   
Sbjct: 324 QSKSSEPSLLKRLNNSTKILNQGLTIIKSESYLFN-YIHFIRQIIVDIK--LKENKL--- 377

Query: 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL-SDSVQ 498
           +E+    LL  Y+ +     L E     Y+ L L+LGK ++A K++ +  S KL  +S Q
Sbjct: 378 IENITDILLKAYKYSIDNNILKESGYQYYIELLLELGKTNDAIKVSEE--SVKLFKNSNQ 435

Query: 499 LWLLRISVEIR 509
           LW  RI++ I+
Sbjct: 436 LWNQRINLLIK 446

Involved in nucleolar processing of pre-18S ribosomal RNA.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	697
225444476	652	PREDICTED: U3 small nucleolar RNA-associ	0.925	0.989	0.726	0.0
255554841	652	hepatocellular carcinoma-associated anti	0.932	0.996	0.699	0.0
356521999	655	PREDICTED: U3 small nucleolar RNA-associ	0.934	0.993	0.656	0.0
224096798	643	predicted protein [Populus trichocarpa]	0.915	0.992	0.671	0.0
356563026	649	PREDICTED: U3 small nucleolar RNA-associ	0.929	0.998	0.665	0.0
357480335	647	U3 small nucleolar RNA-associated protei	0.925	0.996	0.635	0.0
357480337	665	U3 small nucleolar RNA-associated protei	0.925	0.969	0.618	0.0
449433970	651	PREDICTED: U3 small nucleolar RNA-associ	0.932	0.998	0.645	0.0
297799154	652	hypothetical protein ARALYDRAFT_913702 [	0.915	0.978	0.623	0.0
15234413	648	uncharacterized protein [Arabidopsis tha	0.915	0.984	0.614	0.0

>gi|225444476|ref|XP_002272817.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Vitis vinifera] gi|302144122|emb|CBI23227.3| unnamed protein product [Vitis vinifera]

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/655 (72%), Positives = 558/655 (85%), Gaps = 10/655 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMV+ELDDLERRG+F+R EI+EIVKQRRKFEYRLKRPSPLKQDYLAYIEY
Sbjct: 1   MADVVQYRLERMVNELDDLERRGVFSRREIAEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E QLD+LRRLRKKS+ R+        KK KKSVSDF+GV+RILEIY+LAVMR+KGDI+LW
Sbjct: 61  EKQLDSLRRLRKKSVARE------AKKKTKKSVSDFAGVSRILEIYQLAVMRYKGDIDLW 114

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR+R+NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN TAARALMQ+GLRV
Sbjct: 115 FRYLEFCRERRNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNATAARALMQSGLRV 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTYLNKLKARKVALGED+GTL+ DHRDADEK+W  ENK LFM LD
Sbjct: 175 CPTSEDLWVEYLRMELTYLNKLKARKVALGEDEGTLINDHRDADEKQWREENKDLFMSLD 234

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E  + D S  +N ES+K  D+F+EQGL +L+TIYSGAVEA+PS F+LR +FFEI+EA N
Sbjct: 235 EERGSRDVSNRQNEESKKKSDMFQEQGLSILRTIYSGAVEAIPSRFSLRTQFFEILEAIN 294

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           LA S +M  +ILSDM+RDF  +P+YWDWLARL+  DS      S DIVPS++QKA+QVYE
Sbjct: 295 LAGSKEMQKEILSDMKRDFSAEPEYWDWLARLETIDSEITQERSTDIVPSRLQKAVQVYE 354

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI---SHLLTVYEKAEAMG 458
           EALK +PS+++F+LYTKFLMD I   +E+T++SE  S  EH +   SHLL VYEKAE MG
Sbjct: 355 EALKFLPSAVMFNLYTKFLMDAIVS-REKTKNSEPFSTSEHTVGSLSHLLMVYEKAENMG 413

Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518
           CLTED+A ++V+LYLQLGKLDEARKLA K C+GK S +V LWLLR+SVE++ VTR   SP
Sbjct: 414 CLTEDLACQHVSLYLQLGKLDEARKLAEKFCNGKFSGAVYLWLLRVSVEMKYVTRKCPSP 473

Query: 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578
           SKAD+LSIFELL+ ILTKV+  E+E LWLMALKFF N KH+FDKLV+I+L+S+AKDGG E
Sbjct: 474 SKADLLSIFELLRNILTKVAISEAEGLWLMALKFFSNHKHFFDKLVDISLVSLAKDGGSE 533

Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638
           +GF L SAI+N V+QKDGIQ AREMYKRFLALPRPGL +Y+ CIELE NLA++ DKD LV
Sbjct: 534 NGFCLSSAIVNFVLQKDGIQSAREMYKRFLALPRPGLPMYKICIELELNLAAINDKDCLV 593

Query: 639 NARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTA 693
           NARKLFESAL TYDQ+ +LW+DYYS E K+GTSETA AV+WRARK LKD+ AL  
Sbjct: 594 NARKLFESALTTYDQDINLWQDYYSMEIKMGTSETAAAVHWRARKKLKDAAALIG 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554841|ref|XP_002518458.1| hepatocellular carcinoma-associated antigen, putative [Ricinus communis] gi|223542303|gb|EEF43845.1| hepatocellular carcinoma-associated antigen, putative [Ricinus communis]

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/655 (69%), Positives = 541/655 (82%), Gaps = 5/655 (0%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD VQYRLERMVDELDDLERRG FT  EI+EIVKQRRKFEYRLKRPSPLKQDYLAYIEY
Sbjct: 1   MADTVQYRLERMVDELDDLERRGFFTHQEIAEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLD LRRLRKKS+ RD   + + +KKMK SVSDF+GV+RI++IYRLAV R+KGDI+LW
Sbjct: 61  ETQLDTLRRLRKKSVARD--LKEKGNKKMKMSVSDFAGVSRIVDIYRLAVTRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR R+NGRMKKVLAQ+IRFHPKVPGVWIYAAAWEFDHNLNV AARALMQ+GLRV
Sbjct: 119 FRYLEFCRARRNGRMKKVLAQLIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQSGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CP SE+LW+EYLRMELTYLNKLKARKVALGED GTL+RDHRDADE+ W +EN G+FM LD
Sbjct: 179 CPNSEDLWIEYLRMELTYLNKLKARKVALGEDTGTLLRDHRDADEQHWRDENNGMFMSLD 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E  N +G    N+  +   DLFREQGL +LQTIYSGA+EALPSSF LR+R FEI EAT 
Sbjct: 239 EERGNNNGI---NVSVEDKADLFREQGLNILQTIYSGAIEALPSSFGLRKRLFEIFEATE 295

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           LA S+DM +++L+DM+RDF  D +YWDWLARL++TDS+S    +E  +P Q+QKA+QVYE
Sbjct: 296 LAHSEDMRNQLLNDMKRDFSSDSEYWDWLARLELTDSISMQEMTEGSMPPQLQKAVQVYE 355

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EAL+ V S  +F LY KFLMD+IAPK+E+ + S   SH +H +SHLLT+++KAE  GC++
Sbjct: 356 EALQFVSSPTMFSLYAKFLMDVIAPKREDNQLSGPASHTKHQLSHLLTIFKKAEISGCIS 415

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           ED A  YV+ YLQLG+LDEARKLA   CSGKLSDSV+L LLR S+EIR  T N   PS  
Sbjct: 416 EDFACEYVSFYLQLGRLDEARKLAENFCSGKLSDSVKLLLLRASIEIRIFTNNIPRPSDI 475

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ SIF LLK  LTKVS  ++E LW+MA+K F  +KHYF++LVE++ ISVAKDGGG+ GF
Sbjct: 476 DLQSIFGLLKNALTKVSISQAEELWVMAIKLFAVEKHYFEQLVEMSFISVAKDGGGDHGF 535

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SLPSAI+N V+QK+GIQ ARE YKRFLALPRPGL L + CIELE NLAS+ DK+ L NAR
Sbjct: 536 SLPSAIVNCVLQKNGIQFARETYKRFLALPRPGLALLRTCIELEENLASIHDKECLGNAR 595

Query: 642 KLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPD 696
           KL+ESALAT+DQN  LWRDY++ E KLGTSETA AVYWRARKTLK+S +L   PD
Sbjct: 596 KLYESALATHDQNVRLWRDYHAMEIKLGTSETANAVYWRARKTLKNSASLITSPD 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521999|ref|XP_003529637.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/658 (65%), Positives = 540/658 (82%), Gaps = 7/658 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLE+RGLF+R EI+EIVKQRRKFEYRLKRPSPLK+D+LAY+EY
Sbjct: 1   MADVVQYRLERMVDELDDLEQRGLFSRREIAEIVKQRRKFEYRLKRPSPLKEDFLAYVEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+  ++   +KK+KKS SDF+G+ RI++IY LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARELMKQG--NKKLKKSKSDFAGLLRIMDIYELALKRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR RKNGRMKK LA VIRFHPKVPG+WIYAAAWEFDHNLNV AARALMQ GLRV
Sbjct: 119 FRYLEFCRLRKNGRMKKALANVIRFHPKVPGIWIYAAAWEFDHNLNVAAARALMQEGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTYLNKLKARKVALGED+GTL RD R +DEK W +EN  LFMPL 
Sbjct: 179 CPTSEDLWVEYLRMELTYLNKLKARKVALGEDQGTLTRDPRSSDEKHWRDENSELFMPLG 238

Query: 282 GEVENTDGSQPENM---ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVE 338
              +        N+   ES+K  +LF E+G+ + QT+Y GAVEA+PSS +LR+RFFEI+E
Sbjct: 239 ERGDGDGDDDRANVGSDESEKKQELFEERGMNIFQTVYGGAVEAVPSSLSLRKRFFEILE 298

Query: 339 ATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398
            TNL+  +DM  +IL+DM+RDF   P++WDWLAR +       + + E I+P Q++KA+Q
Sbjct: 299 GTNLSHYEDMCKEILNDMKRDFSTQPEFWDWLARHECDLENDLEISEEGIIP-QVEKAVQ 357

Query: 399 VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458
           VYEEAL+NVPS  +F LY  FL D++A K+ ET  +    H  +YISHLL +YE+AE+MG
Sbjct: 358 VYEEALENVPSGTMFCLYANFLTDIVAHKEGETNINGSSGHAANYISHLLLIYERAESMG 417

Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518
           C+TED+A ++V+L+LQL +LDEARKLAAKLCSGKL++SV+LW LRI++EIRC T++S SP
Sbjct: 418 CITEDLACKHVSLHLQLRQLDEARKLAAKLCSGKLAESVELWGLRITIEIRCTTKSS-SP 476

Query: 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578
           S AD+ S+FELL+ IL KVS  +SE+LWL ALKF+ NQ+ YFDKLVEI+++++ +DGG E
Sbjct: 477 SDADLQSLFELLQQILMKVSVSKSENLWLKALKFYANQRQYFDKLVEISVVTLVRDGGSE 536

Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638
           +GFSL  AI++ + QKDGIQ+ R++YKRFLALPRPGL LY++CI+LE NLAS+GDKD L+
Sbjct: 537 NGFSLSFAIVSFIFQKDGIQKTRDIYKRFLALPRPGLALYRHCIDLETNLASIGDKDGLI 596

Query: 639 NARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPD 696
           NARKL+ESALATYDQN SLW+DYY  ETK+GTSE A A+YWRARK LKD++      D
Sbjct: 597 NARKLYESALATYDQNVSLWQDYYRMETKMGTSEKANAIYWRARKVLKDASEFVTATD 654

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096798|ref|XP_002310740.1| predicted protein [Populus trichocarpa] gi|222853643|gb|EEE91190.1| predicted protein [Populus trichocarpa]

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/658 (67%), Positives = 529/658 (80%), Gaps = 20/658 (3%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD VQY+LERMVDELDDLER+G+FTR EI+EIVKQRRKFEYRLKRPSPLKQD+LAYI+Y
Sbjct: 1   MADTVQYKLERMVDELDDLERKGIFTRQEIAEIVKQRRKFEYRLKRPSPLKQDFLAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRD---EGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDI 158
           E+QLD+LRRLRKKS+ R+   +G +RR  ++ KKSVSDF+G++RI+EIYR+AVMRFKGD+
Sbjct: 61  ETQLDSLRRLRKKSVARELEKQGDKRR--RRNKKSVSDFAGISRIVEIYRIAVMRFKGDL 118

Query: 159 ELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
           ELWF+Y+EFC+ +KNGRMKKVLAQ+IRFHPK PGVWIYAAAWEFDHNLNV+AARALMQNG
Sbjct: 119 ELWFRYLEFCKDKKNGRMKKVLAQLIRFHPKAPGVWIYAAAWEFDHNLNVSAARALMQNG 178

Query: 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFM 278
           LRVCP SE+LWVEYLRMELTYLNKL+ RKVALGE+K  +V D+                M
Sbjct: 179 LRVCPHSEDLWVEYLRMELTYLNKLRVRKVALGEEKENVVHDYD---------------M 223

Query: 279 PLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVE 338
            LD E  N DGS      S+K VDLFRE+GL +LQTIY+GAVEALPSSF LR+R  EI+E
Sbjct: 224 LLDEERGNDDGSNAGTEVSEKKVDLFREKGLLILQTIYTGAVEALPSSFGLRKRLLEILE 283

Query: 339 ATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398
           AT+L  S++MH ++LSDM+RDF  +P+YWDWLARL+MTDS S    S  +   Q QKAIQ
Sbjct: 284 ATDLTHSEEMHKEMLSDMKRDFSREPEYWDWLARLEMTDSKSMSEMSVTLALPQFQKAIQ 343

Query: 399 VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458
           VYEEAL+ +PS M+F+LY KFLMD IAPK  E   S++ S  E YISHLL VYEKA+ +G
Sbjct: 344 VYEEALQFLPSPMMFNLYIKFLMDAIAPKGGENDPSKVSSPTEDYISHLLVVYEKADVVG 403

Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518
            +TED+A +YV+ YLQLG+ DEARKLA +LCSGKLSDS +LW+LR S+EI+  T ++ +P
Sbjct: 404 YMTEDLACQYVSFYLQLGRFDEARKLADRLCSGKLSDSEKLWILRASMEIKSFTDDTSAP 463

Query: 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578
           SK D   +  LL+  LTKVS  ++E LWLMAL  F  QK Y DKLVEI+LISVAKDGG +
Sbjct: 464 SKDDFQYVLGLLRSALTKVSISQAEDLWLMALNVFAKQKKYLDKLVEISLISVAKDGGSD 523

Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638
            GFSL SAI+N ++QKDGI +AR+ YKRFLALP PGLVLY+ CIELE NLASVGDKD L 
Sbjct: 524 DGFSLSSAIVNFMLQKDGIHKARKTYKRFLALPHPGLVLYRCCIELEVNLASVGDKDCLA 583

Query: 639 NARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPD 696
           NARKL+ESALATY Q+ +LW++Y+S E KLGTSETA AV WRARKTLK+S A  A PD
Sbjct: 584 NARKLYESALATYGQDVTLWQNYHSMEIKLGTSETANAVCWRARKTLKNSAAFVAAPD 641

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563026|ref|XP_003549767.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max]

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/655 (66%), Positives = 543/655 (82%), Gaps = 7/655 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLE+RGLF+R EI+EIVKQRRKFEYRLKRPSPLKQD+LAY+EY
Sbjct: 1   MADVVQYRLERMVDELDDLEQRGLFSRREIAEIVKQRRKFEYRLKRPSPLKQDFLAYVEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+  ++   +KK+KKS SDF+G+ RI++IY LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARELMKQG--NKKLKKSKSDFAGLLRIMDIYELALKRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F Y+EFCR RKNGRMKK LA VIRFHPKVPGVWIYAAAWEFDHNLNV AARALMQ GLRV
Sbjct: 119 FCYLEFCRLRKNGRMKKALANVIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQEGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTYLNKLKARKVALGED+GTL RD R +DEK W +EN  LFMPL 
Sbjct: 179 CPTSEDLWVEYLRMELTYLNKLKARKVALGEDQGTLTRDPRSSDEKHWRDENSELFMPLG 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
              ++  G+   + ES+K  +LF E G+ + QT+YSGAVEA+PSS +LR+R FEI+E TN
Sbjct: 239 KRGDDDGGANVGSDESEKKQELFEEHGMNIFQTVYSGAVEAVPSSLSLRKRLFEILEGTN 298

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           L+  +DM  +IL+DM+RDF   P++WDWLAR +    +S++G    I+P Q++KA+QVYE
Sbjct: 299 LSHYEDMCKEILNDMKRDFSTQPEFWDWLARHECDLEISEEG----IIP-QVEKAVQVYE 353

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EALKNVPS  +F LY  FL D+IAPK+ ET  +       +YISHLL++YE+AE+MGC+T
Sbjct: 354 EALKNVPSGTMFSLYANFLTDIIAPKEGETDINGSSGCAVNYISHLLSIYERAESMGCIT 413

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           ED+A ++V+L+LQL +LDEA+KLAAKLCSGKL++SV+LW LRI++EIRC+T +S SPS A
Sbjct: 414 EDLACKHVSLHLQLRQLDEAQKLAAKLCSGKLAESVELWGLRITIEIRCITGSSSSPSDA 473

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ S+FELL+ IL KVS   SE+LWL ALKF+ NQ+ YFDKLVEI+++++ +DGG E+GF
Sbjct: 474 DLQSLFELLQQILMKVSVSRSENLWLKALKFYANQRRYFDKLVEISVVTLVRDGGSENGF 533

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SL SAI++ ++QKDGIQ+ R++YKRFLALP PGL LY+ CI+LE NLAS+GDKD L+NAR
Sbjct: 534 SLSSAIVSFILQKDGIQKTRDIYKRFLALPLPGLALYRRCIDLETNLASIGDKDGLINAR 593

Query: 642 KLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPD 696
           KL+ES+LATYDQN SLW+DYY  E K+GTSE ATA+YWRARK LKD++     PD
Sbjct: 594 KLYESSLATYDQNVSLWQDYYRLEIKMGTSEKATAIYWRARKVLKDASEFVTAPD 648

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480335|ref|XP_003610453.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi|355511508|gb|AES92650.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula]

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 529/655 (80%), Gaps = 10/655 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD+VQY+LERM DE +DLE+RGLF + EI+EIVKQRRKFEYRLKRP PLK D++AYI+Y
Sbjct: 1   MADIVQYKLERMFDEFEDLEQRGLFNKREIAEIVKQRRKFEYRLKRPCPLKADFVAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+   +++ +K +KKS SDF+G+ RI++ Y LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARE--LKKQGNKNLKKSKSDFAGLIRIIDTYELALKRYKGDIQLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR +KNGRMKK LA+++R HPKVPGVWIYAAAWEFD NLNV AARALMQ GLRV
Sbjct: 119 FRYLEFCRVQKNGRMKKALAKLVRLHPKVPGVWIYAAAWEFDRNLNVVAARALMQGGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTY+NKLKARKVALGED+GTL RD R  +EK+W +ENK LFM LD
Sbjct: 179 CPTSEDLWVEYLRMELTYINKLKARKVALGEDEGTLTRDPRTVEEKQWRDENKELFMTLD 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E E  D +  E  ES+K+ +LF E G+ + +T+Y GA+EA+PSS NLR+RFFEI+E T 
Sbjct: 239 -EKEENDVANVEPDESKKNKELFAEHGMNLFRTVYGGAIEAVPSSLNLRKRFFEILEGTE 297

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           L+  +DM  ++L+DM+RDF  +P++WDWLAR +       +   E I+P Q+QKAIQVYE
Sbjct: 298 LSHYEDMCKEMLNDMKRDFSTEPEFWDWLARQECNVEAVHEINQEIIIP-QVQKAIQVYE 356

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EALK+VPS  +F LY  FLM ++APK EE      P+    YISHLL++YE+AE+MG +T
Sbjct: 357 EALKSVPSGTMFSLYANFLMGIVAPKDEE------PNIDGPYISHLLSIYERAESMGIIT 410

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           +D+A ++V+L+LQL  LDEARKL AKLCSGKL++SVQLW LR+S+EI C+T++S  PS  
Sbjct: 411 DDLACKHVSLHLQLRHLDEARKLVAKLCSGKLAESVQLWELRVSIEITCITQSSLLPSDT 470

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ S+FELL+ ILTK    +SE+LWL ALKF+ + + YFDKLVEI+++S+A+DGG ESGF
Sbjct: 471 DLSSLFELLRQILTKFHVSKSENLWLRALKFYASHRRYFDKLVEISVLSLARDGGSESGF 530

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SL SAI++ ++QKDGI +AR++YKR+LALP PGL LY+ CIELE NLAS GDK+SLVNAR
Sbjct: 531 SLSSAIVSFILQKDGIHKARDIYKRYLALPHPGLALYRKCIELEANLASTGDKNSLVNAR 590

Query: 642 KLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPD 696
           KL+ESALATYDQN   W+DYY  E K+GTS+ ATAVYWRARK LKD++   A PD
Sbjct: 591 KLYESALATYDQNVDFWQDYYRMEVKMGTSQQATAVYWRARKILKDASEFIASPD 645

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480337|ref|XP_003610454.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi|355511509|gb|AES92651.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula]

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/673 (61%), Positives = 529/673 (78%), Gaps = 28/673 (4%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD+VQY+LERM DE +DLE+RGLF + EI+EIVKQRRKFEYRLKRP PLK D++AYI+Y
Sbjct: 1   MADIVQYKLERMFDEFEDLEQRGLFNKREIAEIVKQRRKFEYRLKRPCPLKADFVAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+   +++ +K +KKS SDF+G+ RI++ Y LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARE--LKKQGNKNLKKSKSDFAGLIRIIDTYELALKRYKGDIQLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR +KNGRMKK LA+++R HPKVPGVWIYAAAWEFD NLNV AARALMQ GLRV
Sbjct: 119 FRYLEFCRVQKNGRMKKALAKLVRLHPKVPGVWIYAAAWEFDRNLNVVAARALMQGGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTY+NKLKARKVALGED+GTL RD R  +EK+W +ENK LFM LD
Sbjct: 179 CPTSEDLWVEYLRMELTYINKLKARKVALGEDEGTLTRDPRTVEEKQWRDENKELFMTLD 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E E  D +  E  ES+K+ +LF E G+ + +T+Y GA+EA+PSS NLR+RFFEI+E T 
Sbjct: 239 -EKEENDVANVEPDESKKNKELFAEHGMNLFRTVYGGAIEAVPSSLNLRKRFFEILEGTE 297

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           L+  +DM  ++L+DM+RDF  +P++WDWLAR +       +   E I+P Q+QKAIQVYE
Sbjct: 298 LSHYEDMCKEMLNDMKRDFSTEPEFWDWLARQECNVEAVHEINQEIIIP-QVQKAIQVYE 356

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EALK+VPS  +F LY  FLM ++APK EE      P+    YISHLL++YE+AE+MG +T
Sbjct: 357 EALKSVPSGTMFSLYANFLMGIVAPKDEE------PNIDGPYISHLLSIYERAESMGIIT 410

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           +D+A ++V+L+LQL  LDEARKL AKLCSGKL++SVQLW LR+S+EI C+T++S  PS  
Sbjct: 411 DDLACKHVSLHLQLRHLDEARKLVAKLCSGKLAESVQLWELRVSIEITCITQSSLLPSDT 470

Query: 522 DILSIFELLKCILTKVSALESESLWL------------------MALKFFMNQKHYFDKL 563
           D+ S+FELL+ ILTK    +SE+LWL                   ALKF+ + + YFDKL
Sbjct: 471 DLSSLFELLRQILTKFHVSKSENLWLRVCCHHLSLIFVAMSCIKCALKFYASHRRYFDKL 530

Query: 564 VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIE 623
           VEI+++S+A+DGG ESGFSL SAI++ ++QKDGI +AR++YKR+LALP PGL LY+ CIE
Sbjct: 531 VEISVLSLARDGGSESGFSLSSAIVSFILQKDGIHKARDIYKRYLALPHPGLALYRKCIE 590

Query: 624 LENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARK 683
           LE NLAS GDK+SLVNARKL+ESALATYDQN   W+DYY  E K+GTS+ ATAVYWRARK
Sbjct: 591 LEANLASTGDKNSLVNARKLYESALATYDQNVDFWQDYYRMEVKMGTSQQATAVYWRARK 650

Query: 684 TLKDSTALTALPD 696
            LKD++   A PD
Sbjct: 651 ILKDASEFIASPD 663

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433970|ref|XP_004134769.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Cucumis sativus]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/655 (64%), Positives = 524/655 (80%), Gaps = 5/655 (0%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQ+RLE MVDELDD E+RGLF+R EI+EIVKQRRKFEYRLKRP PLKQDYL YI+Y
Sbjct: 1   MADVVQFRLEGMVDELDDFEKRGLFSRREIAEIVKQRRKFEYRLKRPCPLKQDYLTYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E QL++LRRLRKK++ R+   +++  KKMKKS+SDF+GV RIL IYRLAV R+KGDI+LW
Sbjct: 61  EIQLESLRRLRKKAVARE--LKKQGDKKMKKSISDFAGVKRILYIYRLAVTRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR RKNG MKKVLAQ+IRFHPKVPGVWIYAAAWEFDHN+NV AAR+LM +GLRV
Sbjct: 119 FRYLEFCRARKNGTMKKVLAQLIRFHPKVPGVWIYAAAWEFDHNINVDAARSLMLSGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LW+EYLRMELTYLNKLKARKVALGED+G+LVR++  A EK+W  ENK LFM + 
Sbjct: 179 CPTSEDLWIEYLRMELTYLNKLKARKVALGEDEGSLVRENITAAEKQWREENKDLFMSMG 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
               + D S  E + S+  +DLFRE+G  +L+TIYSGA+EALPSSF+LR+R  EI+EA +
Sbjct: 239 ETRGDNDESGVETL-SKDKLDLFREKGSNLLETIYSGAIEALPSSFSLRKRVLEILEAMD 297

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           LA S++M  KIL D++RDF   P+YWDWLARL   +  +  GTS+    S+++KA++VYE
Sbjct: 298 LAHSEEMQSKILQDIKRDFASQPQYWDWLARL-YCNPENVQGTSDIKEISRIEKAVKVYE 356

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           E L+ VPSS IF LY +FL  +I P K E +   L SH ++  S LL VYEKA  +G +T
Sbjct: 357 EGLECVPSSAIFSLYVEFLRSIIVPVKGE-QTLGLSSHTDNITSRLLMVYEKALTLGHIT 415

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           +D+A +YV  YL+LG+LDEA+KLA +LCSGK S+SV+LW+LR+S EI+CV ++S SPSK 
Sbjct: 416 DDLACQYVLFYLELGRLDEAQKLAERLCSGKFSNSVKLWVLRVSTEIKCVLKDSPSPSKD 475

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ SIFEL K +L K S  ES SLWL  LKFF NQ +YFDKLVEI+L ++AK GG E GF
Sbjct: 476 DLKSIFELTKEVLKKFSVSESGSLWLKVLKFFANQSYYFDKLVEISLYALAKSGGNEDGF 535

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SL S I++ V+QKDGIQ+ RE+YK+FL LP PGL +YQ CI+LE+NLA+ GDKD L NAR
Sbjct: 536 SLSSVIVDFVLQKDGIQRTREVYKKFLGLPHPGLAMYQTCIQLESNLATAGDKDGLANAR 595

Query: 642 KLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTALTALPD 696
           KLFESALATY QN  LW++YY+ E+K+G+SETA AV WRARKTLKD+TAL    D
Sbjct: 596 KLFESALATYGQNVRLWQEYYTLESKIGSSETAAAVRWRARKTLKDATALATSSD 650

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799154|ref|XP_002867461.1| hypothetical protein ARALYDRAFT_913702 [Arabidopsis lyrata subsp. lyrata] gi|297313297|gb|EFH43720.1| hypothetical protein ARALYDRAFT_913702 [Arabidopsis lyrata subsp. lyrata]

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/658 (62%), Positives = 518/658 (78%), Gaps = 20/658 (3%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLERRG+FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct: 1   MADVVQYRLERMVDELDDLERRGIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E +LD LR+LR+K++  +        K+ KKSVSD++GVARI+EIYRLA MR+KGDI LW
Sbjct: 61  EVKLDELRQLRRKAVAYE------SKKRKKKSVSDYAGVARIVEIYRLATMRYKGDINLW 114

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct: 115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           C  SE+LWVEYLRMELTYLNKLKAR+VALGE KG+LVRD +  ++++W +ENK LFM LD
Sbjct: 175 CSNSEDLWVEYLRMELTYLNKLKARRVALGESKGSLVRDTKSVEDEKWKDENKELFMSLD 234

Query: 282 ---GEVENTDGSQPENMES----QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFF 334
              G  +  DG +  N+E      + VD+FRE+G  VLQTIYSGAVEALPSSF+LR+RF 
Sbjct: 235 EKEGNEKEEDGEEDSNVEDAEDVTEKVDVFREKGSNVLQTIYSGAVEALPSSFDLRKRFL 294

Query: 335 EIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394
           EI+EAT+LA SD++ + ILSD++RDF  +P+YW+WLAR +M+  +SK+ T  +    QMQ
Sbjct: 295 EILEATDLAHSDEIRNTILSDLKRDFCKEPEYWNWLARHEMSGYISKE-TGLEFSNLQMQ 353

Query: 395 KAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSEL-PSH--VEHYISHLLTVY 451
           KAIQV+EE L+ V SS +F +Y KFLM+ IA    +  D E+ PS   +  YISH++ VY
Sbjct: 354 KAIQVFEEGLQTVTSSSMFKIYIKFLMEAIAQSNGD--DDEISPSSNPIGDYISHIINVY 411

Query: 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511
           +KA+  GCLTE++A  YV+LYL+LGK  EA+KLA KLCSGK + S +LWL R+S+EIR +
Sbjct: 412 QKADETGCLTEELADEYVSLYLKLGKTHEAQKLAEKLCSGKFAGSAKLWLSRVSIEIRSL 471

Query: 512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISV 571
           + NS +PSKAD+ ++FELL   LTKV   ESESLWLMALKFF +Q+ Y DKLVE++++  
Sbjct: 472 SGNS-TPSKADLQTVFELLSNALTKVPISESESLWLMALKFFAHQRTYLDKLVEMSILLA 530

Query: 572 AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASV 631
            K  G +  FSL S ++N V++  G   AR++YKRFLALP P LVLY++CIE+E NL SV
Sbjct: 531 TKSHGSDHVFSLSSTVVNFVLETKGGHSARKIYKRFLALPGPSLVLYKDCIEIETNLISV 590

Query: 632 GDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689
           GDKD L NARKL++SA+A+Y Q+  LW++YY  ETK+GTSETA  VYWRARKTLK+S 
Sbjct: 591 GDKDGLSNARKLYDSAVASYSQDVELWKNYYLLETKMGTSETANGVYWRARKTLKESA 648

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234413|ref|NP_194549.1| uncharacterized protein [Arabidopsis thaliana] gi|7269674|emb|CAB79622.1| putative protein [Arabidopsis thaliana] gi|18252169|gb|AAL61917.1| putative protein [Arabidopsis thaliana] gi|30725462|gb|AAP37753.1| At4g28200 [Arabidopsis thaliana] gi|332660053|gb|AEE85453.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/654 (61%), Positives = 505/654 (77%), Gaps = 16/654 (2%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLERR +FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct: 1   MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E +LD LR+LR+KS+ R         K+ KKSVSDF+GVARI+EIYRLA MR+KGDI LW
Sbjct: 61  EVKLDELRQLRRKSVAR------VTKKRKKKSVSDFAGVARIVEIYRLATMRYKGDINLW 114

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct: 115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           C  SE+LWVEYLRMELT+LNKLKARKVALGEDKG+LVRD +  ++++W +ENK LFM LD
Sbjct: 175 CSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLD 234

Query: 282 GEVENT-----DGSQPENMES-QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335
            +  N      + S  E++E   + VD  +E+G  VLQTIYSGAVEA+PSSF+LR+RF E
Sbjct: 235 EKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLE 294

Query: 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395
           I+EAT+LA SD+M + ILSD++RDF  +P+YW+WLAR +M+  +S +   E   P QMQK
Sbjct: 295 ILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANP-QMQK 353

Query: 396 AIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455
           AIQV+EE L+ V SS +F++Y  FLM+ I     +  ++E+ S     ISH++ VY+KA+
Sbjct: 354 AIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGD--ENEISSLSNPIISHIINVYQKAD 411

Query: 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515
             GCLTE++A  YV+LYL+L K  EA+KLA KLCS K + S +LWL R+S+EIR ++ NS
Sbjct: 412 ETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENS 471

Query: 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDG 575
            SPSKAD  ++FELL   L KV   ESESLWLMA  FF +Q+ Y DKLVE++++S  K  
Sbjct: 472 -SPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSH 530

Query: 576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKD 635
           G +  FSL S ++  V++  G   AR++YKRFLALP P LVLY+ CIE+E NL SVGDKD
Sbjct: 531 GSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKD 590

Query: 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689
            L NARKL++SA+A+Y Q+  LW++YYS ETKLGTSETA  VYWRARKTL +S 
Sbjct: 591 GLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNESA 644

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	697
TAIR|locus:2123678	648	AT4G28200 "AT4G28200" [Arabido	0.913	0.983	0.606	3.2e-207
UNIPROTKB|E2RMS8	598	UTP6 "Uncharacterized protein"	0.281	0.327	0.333	2.8e-39
UNIPROTKB|F1RJ62	598	UTP6 "Uncharacterized protein"	0.281	0.327	0.333	5.9e-38
MGI|MGI:2445193	597	Utp6 "UTP6, small subunit (SSU	0.281	0.328	0.318	6.6e-38
UNIPROTKB|Q9NYH9	597	UTP6 "U3 small nucleolar RNA-a	0.307	0.358	0.312	1.8e-37
UNIPROTKB|E1BYV8	597	UTP6 "Uncharacterized protein"	0.295	0.345	0.331	1.8e-37
UNIPROTKB|A5PJN6	598	UTP6 "Uncharacterized protein"	0.281	0.327	0.352	3.7e-37
UNIPROTKB|F1NLG7	599	UTP6 "Uncharacterized protein"	0.295	0.343	0.331	2.6e-36
ZFIN|ZDB-GENE-040426-769	594	utp6 "UTP6, small subunit (SSU	0.291	0.341	0.308	5e-32
CGD|CAL0000714	431	orf19.2330 [Candida albicans (	0.322	0.522	0.338	8e-31

TAIR|locus:2123678 AT4G28200 "AT4G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
 Identities = 396/653 (60%), Positives = 500/653 (76%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MADVVQYRLERMVDELDDLERR +FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct:     1 MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E +LD LR+LR+KS+ R   + ++             GVARI+EIYRLA MR+KGDI LW
Sbjct:    61 EVKLDELRQLRRKSVARVTKKRKK------KSVSDFAGVARIVEIYRLATMRYKGDINLW 114

Query:   162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
             F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct:   115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174

Query:   222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
             C  SE+LWVEYLRMELT+LNKLKARKVALGEDKG+LVRD +  ++++W +ENK LFM LD
Sbjct:   175 CSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLD 234

Query:   282 ---G--EVENTDGSQPENMES-QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335
                G  + EN + S  E++E   + VD  +E+G  VLQTIYSGAVEA+PSSF+LR+RF E
Sbjct:   235 EKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLE 294

Query:   336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395
             I+EAT+LA SD+M + ILSD++RDF  +P+YW+WLAR +M+  +S +   E   P QMQK
Sbjct:   295 ILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANP-QMQK 353

Query:   396 AIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455
             AIQV+EE L+ V SS +F++Y  FLM+ I     +  ++E+ S     ISH++ VY+KA+
Sbjct:   354 AIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGD--ENEISSLSNPIISHIINVYQKAD 411

Query:   456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515
               GCLTE++A  YV+LYL+L K  EA+KLA KLCS K + S +LWL R+S+EIR ++ NS
Sbjct:   412 ETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENS 471

Query:   516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDG 575
              SPSKAD  ++FELL   L KV   ESESLWLMA  FF +Q+ Y DKLVE++++S  K  
Sbjct:   472 -SPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSH 530

Query:   576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKD 635
             G +  FSL S ++  V++  G   AR++YKRFLALP P LVLY+ CIE+E NL SVGDKD
Sbjct:   531 GSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKD 590

Query:   636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688
              L NARKL++SA+A+Y Q+  LW++YYS ETKLGTSETA  VYWRARKTL +S
Sbjct:   591 GLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNES 643

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|E2RMS8 UTP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
 Identities = 69/207 (33%), Positives = 113/207 (54%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EYR++R +  K+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYRIQRRALFKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+  IG    ++                V R+  ++R A  ++K D++LW
Sbjct:    61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++     ++ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYVVFCKKWATKPQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPECPKLYQEYFRMELMHAEKLRKEK 197

GO:0005730 "nucleolus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|F1RJ62 UTP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 322 (118.4 bits), Expect = 5.9e-38, Sum P(2) = 5.9e-38
 Identities = 69/207 (33%), Positives = 114/207 (55%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+R EI  I+K+    EY+++R +  K+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRLPELEQLERIGLFSRAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+  IG    ++                V R+  ++R A  ++K D++LW
Sbjct:    61 EINLLELIQRRRARIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++     ++ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPECPKLYQEYFRMELMHAEKLRKEK 197

GO:0005730 "nucleolus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

MGI|MGI:2445193 Utp6 "UTP6, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
 Identities = 66/207 (31%), Positives = 110/207 (53%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY++ R + LK+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L  +++        R  R+             V R+  ++  A  ++K D++LW
Sbjct:    61 EINL--LELIQR--------RRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++      + K+ + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPECPKLYQEYFRMELMHAEKLRKEK 197

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|Q9NYH9 UTP6 "U3 small nucleolar RNA-associated protein 6 homolog" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
 Identities = 71/227 (31%), Positives = 122/227 (53%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY+++R +  K+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+  IG    ++                V R+  +++ A  ++K D++LW
Sbjct:    61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFQRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++     R+ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEK 267
               P   +L+ EY RMEL +  KL+  K     +K ++  ++ D  E+
Sbjct:   171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASMDVENPDYSEE 215

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E1BYV8 UTP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
 Identities = 72/217 (33%), Positives = 113/217 (52%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+ V+ RLE  V EL+ LER GLFT  EI  ++K+    EY+++R +  K+D++ YI+Y
Sbjct:     1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+   G    +E                + R+  +++ A  ++K D++LW
Sbjct:    61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ FC+Q     ++ KV + ++  HP  P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
               P   +L+ EY RMEL    K +  K  L   K  L
Sbjct:   171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|A5PJN6 UTP6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
 Identities = 73/207 (35%), Positives = 112/207 (54%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+V+Q R+E  + EL  LER GLF+  EI  I+++  + EYR++R S LK D++ Y++Y
Sbjct:     1 MAEVIQERVEDRLPELQQLERTGLFSHAEIKAIIRKALELEYRIQRRSLLKDDFIRYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L  + K        R  RV             + RI  ++R A +++K D+ LW
Sbjct:    61 EIHL--LDLIEK--------RRARVGYTFKKDEIEDPIIHRIQSVFRRASIKWKDDVRLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ FCR+   N  + K+ + ++ FH   PG+WI AA WE +   +  +AR L    LR
Sbjct:   111 LSFIAFCRKWASNVHLSKIFSSLLAFHSNKPGLWILAAKWELEDRFSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPRCPKLYEEYFRMELMHAEKLRKEK 197

GO:0005730 "nucleolus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|F1NLG7 UTP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
 Identities = 72/217 (33%), Positives = 113/217 (52%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+ V+ RLE  V EL+ LER GLFT  EI  ++K+    EY+++R +  K+D++ YI+Y
Sbjct:     1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+   G    +E                + R+  +++ A  ++K D++LW
Sbjct:    61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ FC+Q     ++ KV + ++  HP  P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
               P   +L+ EY RMEL    K +  K  L   K  L
Sbjct:   171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207

GO:0006396 "RNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-040426-769 utp6 "UTP6, small subunit (SSU) processome component, homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
 Identities = 66/214 (30%), Positives = 113/214 (52%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MAD+VQ RLE  +  L+ LER GLFT  E+  ++K+    EY+L R    K D++AYI++
Sbjct:     1 MADIVQQRLEDRIPGLEQLERVGLFTNKEVKSMLKRSTALEYKLHRAIQCKDDFIAYIQF 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E     L + R+  IG    RE                +  I  ++R A  +++ D++LW
Sbjct:    61 EINTLGLIKKRRARIGYHFKREEIEYPI----------IQGINSVFRRATSKWQEDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ F ++     ++ K+L  ++  HP  P +WI AA  E +   +  +AR L    LR
Sbjct:   111 LSHVAFNKKWGSKTQLSKILLSMLAIHPDKPALWIMAAKCEMEDRNSSESARHLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDK 254
               P ++++++EY RMEL +  K++ ++  L + K
Sbjct:   171 FHPENKKVYLEYFRMELMHAEKMRKQQQELEQAK 204

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

CGD|CAL0000714 orf19.2330 [Candida albicans (taxid:5476)]

 Score = 347 (127.2 bits), Expect = 8.0e-31, P = 8.0e-31
 Identities = 80/236 (33%), Positives = 133/236 (56%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+ ++Y LE+ V EL+DL+ +GLF ++EI+ ++++R  FE+R+       +D+L Y E+
Sbjct:     1 MAEKIRYYLEQSVPELEDLKIKGLFDKNEITMVMRRRTDFEHRITGRGCKPKDFLRYTEF 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E+ L+ LR+ R   + +    E +             G  RI+ I+  A  R+ G+ ELW
Sbjct:    61 ETNLEKLRKKRYNRLSKVGMIETKPSISDWA------GTRRIMFIFDRATRRYPGETELW 114

Query:   162 FKYMEFCRQRKNGRMK---KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
              +Y++F +   NG +K   KV +++++  P+    W+ AA +EF+ N N   AR L Q G
Sbjct:   115 SQYLKFAKS--NGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRG 172

Query:   219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
             LR+   S ELW+ Y + ELTY++KL AR+  LG       R+  + +E +   E K
Sbjct:   173 LRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIK 228

GO:0034388 "Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010972001	SubName- Full=Chromosome chr10 scaffold_297, whole genome shotgun sequence; (645 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•					0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	697
COG5191	435	COG5191, COG5191, Uncharacterized conserved protei	2e-46
pfam08640	83	pfam08640, U3_assoc_6, U3 small nucleolar RNA-asso	4e-28

>gnl|CDD|227518 COG5191, COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

 Score =  170 bits (432), Expect = 2e-46
 Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 11/207 (5%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           M + +QY +E+M+ EL+DL+ +G+F+  E+  IVK RRKFE RL+R      D++ YI+Y
Sbjct: 1   MVEKIQYYMEQMIPELEDLKEKGIFSPDELRRIVKTRRKFELRLQRREKKLNDFMRYIKY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L+ LR  R K          R     K S SD S   + +     +  +F  D ++W
Sbjct: 61  ECNLEKLRAKRVK----------RKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIW 110

Query: 162 FKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
            +Y  +  ++K  G MK + A+ +  HP    +WIY  A+E     N+ ++RA+   GLR
Sbjct: 111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
           +   S  +W+EY RMEL Y+ KL  R+
Sbjct: 171 MNSRSPRIWIEYFRMELMYITKLINRR 197

Length = 435

>gnl|CDD|192109 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associated protein 6

 Score =  107 bits (269), Expect = 4e-28
 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 11/94 (11%)

Query: 50  LERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALR 109
           LE+ V EL+DLER+GLFT+ EI  IVK+R  FEYRL+R      D+L YI+YE  L+ LR
Sbjct: 1   LEQSVPELEDLERKGLFTKDEIRSIVKKRTDFEYRLQRRGSSLSDFLRYIQYELNLEKLR 60

Query: 110 RLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARI 143
           R R+K IG             K S+ D+S   RI
Sbjct: 61  RKRRKRIGYK-----------KNSIIDYSIQHRI 83

This is a family of U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	697
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
COG5191	435	Uncharacterized conserved protein, contains HAT (H	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	100.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.96
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.92
PF08640	83	U3_assoc_6: U3 small nucleolar RNA-associated prot	99.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.86
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.85
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.77
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.76
KOG1258	577	consensus mRNA processing protein [RNA processing	99.75
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.7
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.63
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.63
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	99.61
KOG1258	577	consensus mRNA processing protein [RNA processing	99.61
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.6
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.56
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.52
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.52
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.47
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.44
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.42
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.38
PLN03218	1060	maturation of RBCL 1; Provisional	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.35
PLN03218	1060	maturation of RBCL 1; Provisional	99.31
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.3
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.3
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.26
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.21
PLN03077	857	Protein ECB2; Provisional	99.1
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.1
PRK14574	822	hmsH outer membrane protein; Provisional	99.09
PLN03077	857	Protein ECB2; Provisional	99.08
PRK14574	822	hmsH outer membrane protein; Provisional	99.07
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.04
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.95
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.91
PRK12370	553	invasion protein regulator; Provisional	98.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.87
KOG2076	895	consensus RNA polymerase III transcription factor	98.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.84
KOG2076	895	consensus RNA polymerase III transcription factor	98.84
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.68
KOG1126	638	consensus DNA-binding cell division cycle control	98.61
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.6
PRK11189	296	lipoprotein NlpI; Provisional	98.59
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.58
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.55
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.52
PRK12370	553	invasion protein regulator; Provisional	98.51
PRK11189	296	lipoprotein NlpI; Provisional	98.41
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	98.38
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.38
KOG1126	638	consensus DNA-binding cell division cycle control	98.3
KOG1125	579	consensus TPR repeat-containing protein [General f	98.26
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.2
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.05
PLN02789	320	farnesyltranstransferase	98.05
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.02
PLN02789	320	farnesyltranstransferase	98.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.97
PRK15359	144	type III secretion system chaperone protein SscB;	97.96
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.94
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.91
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.9
PRK15359	144	type III secretion system chaperone protein SscB;	97.9
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.85
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	97.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.83
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.82
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.8
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.79
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.77
KOG1129	478	consensus TPR repeat-containing protein [General f	97.77
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.72
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.67
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	97.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.55
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.55
KOG1129	478	consensus TPR repeat-containing protein [General f	97.54
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.48
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	97.47
KOG2003	840	consensus TPR repeat-containing protein [General f	97.46
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.44
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.4
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.37
KOG1125	579	consensus TPR repeat-containing protein [General f	97.33
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.33
KOG2003	840	consensus TPR repeat-containing protein [General f	97.29
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.24
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.23
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	97.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.16
PF13428	44	TPR_14: Tetratricopeptide repeat	97.14
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.13
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.11
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.1
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.02
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.99
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.97
PF13371	73	TPR_9: Tetratricopeptide repeat	96.94
PF13428	44	TPR_14: Tetratricopeptide repeat	96.93
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.76
PRK11906	458	transcriptional regulator; Provisional	96.72
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.67
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.44
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.33
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	96.29
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.26
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.26
PRK10803	263	tol-pal system protein YbgF; Provisional	96.19
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.15
PF13371	73	TPR_9: Tetratricopeptide repeat	96.12
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.01
KOG0553	304	consensus TPR repeat-containing protein [General f	95.82
KOG0553	304	consensus TPR repeat-containing protein [General f	95.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.69
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.67
PF13431	34	TPR_17: Tetratricopeptide repeat	95.67
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.49
PRK10803	263	tol-pal system protein YbgF; Provisional	95.35
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.13
PF13431	34	TPR_17: Tetratricopeptide repeat	95.02
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.71
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	94.59
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.52
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.06
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	93.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	93.65
PF12688	120	TPR_5: Tetratrico peptide repeat	93.54
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.3
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.3
PRK11906	458	transcriptional regulator; Provisional	93.28
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.07
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	92.97
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.51
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	92.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.29
PRK15331	165	chaperone protein SicA; Provisional	92.12
KOG3785	557	consensus Uncharacterized conserved protein [Funct	91.78
KOG2376	652	consensus Signal recognition particle, subunit Srp	91.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	91.02
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.83
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	90.67
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.32
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	90.07
PF13512	142	TPR_18: Tetratricopeptide repeat	90.06
PRK15331	165	chaperone protein SicA; Provisional	89.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.95
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	89.95
PF12688	120	TPR_5: Tetratrico peptide repeat	89.75
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	89.41
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	89.4
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	89.29
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	88.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	87.39
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.0
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	86.51
KOG4555	175	consensus TPR repeat-containing protein [Function	86.43
PF13512	142	TPR_18: Tetratricopeptide repeat	86.27
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	85.54
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.14
PF03704	146	BTAD: Bacterial transcriptional activator domain;	85.05
KOG2376	652	consensus Signal recognition particle, subunit Srp	84.15
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.92
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	81.7
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	81.19
COG4105	254	ComL DNA uptake lipoprotein [General function pred	80.19

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-74  Score=589.76  Aligned_cols=559  Identities=36%  Similarity=0.607  Sum_probs=451.6

Q ss_pred             hHHHHHHHHHhhhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 005434           42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG  121 (697)
Q Consensus        42 ma~~v~~~le~~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~  121 (697)
                      |||+||.++|+|||||+||+++||||++||+.||++|+.||++|+|+...+.||++||+||.++++||.+|+|+.     
T Consensus         1 Mae~iqy~~Er~lpElEdl~~~giFt~dEi~~Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~-----   75 (568)
T KOG2396|consen    1 MAEKIQYRMERMLPELEDLKRKGIFTRDEIREIVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKK-----   75 (568)
T ss_pred             CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998643     


Q ss_pred             hhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005434          122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW  200 (697)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~  200 (697)
                             ..+.+.+|.++.+||..+|.+|+.+|++|+++|..|+.||++.+ +.++.++|..+|+.||++|.+||.+|.|
T Consensus        76 -------~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w  148 (568)
T KOG2396|consen   76 -------RVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW  148 (568)
T ss_pred             -------hcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence                   23678899999999999999999999999999999999999988 6899999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCC
Q 005434          201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL  280 (697)
Q Consensus       201 e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  280 (697)
                      +++.+-|++.||.+|.||||+||+++.||.+|++||+.+.+++..|+.++|.+....       +++             
T Consensus       149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~e-------------  208 (568)
T KOG2396|consen  149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEE-------------  208 (568)
T ss_pred             HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHH-------------
Confidence            999888999999999999999999999999999999999999999998888754211       000             


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhC
Q 005434          281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF  360 (697)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~  360 (697)
                                      .         ..++.+-.++...+..+...+..-.  .+....+.  ...++.+.+++.+...+
T Consensus       209 ----------------i---------e~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d--~~kel~k~i~d~~~~~~  259 (568)
T KOG2396|consen  209 ----------------I---------ERGELAWINYANSVDIIKGAVKSVE--LSVAEKFD--FLKELQKNIIDDLQSKA  259 (568)
T ss_pred             ----------------H---------HHHHHHHHhhccchhhhhcchhhcc--hHHHHHHH--HHHHHHHHHHHHHhccC
Confidence                            0         0112223333333322211110000  11111112  13578888999999999


Q ss_pred             CCChhhHHHHHHhhcccCCCCC------CCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCC
Q 005434          361 LVDPKYWDWLARLKMTDSVSKD------GTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDS  434 (697)
Q Consensus       361 p~~~~~w~~~a~~~l~~~~~~~------~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~  434 (697)
                      |.+|.+|..+|+.++.....+.      ..+...+-..-+.+..||++|++.+++..||.-||+|+...+..        
T Consensus       260 ~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~--------  331 (568)
T KOG2396|consen  260 PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTF--------  331 (568)
T ss_pred             CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--------
Confidence            9999999999999886322110      01111122345678899999999999999999999999876531        


Q ss_pred             CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccC
Q 005434          435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN  514 (697)
Q Consensus       435 ~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~  514 (697)
                          .....+.+...+|+.+.......+.+.-.|+.+.+......+++.+..+.+...+.++..+|..++........  
T Consensus       332 ----~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--  405 (568)
T KOG2396|consen  332 ----LRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--  405 (568)
T ss_pred             ----hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--
Confidence                01246788999999999998888899999998888877778888888888867888999999999998876543  


Q ss_pred             CCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434          515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN-QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ  593 (697)
Q Consensus       515 ~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~-~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~  593 (697)
                             |++-........++..+.....+.|.+..+  .. -+.....++-.|..+..    +....++...|++|+.+
T Consensus       406 -------D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~--~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l~~~~e  472 (568)
T KOG2396|consen  406 -------DFQMLFEELFNHLRKQVCSELLISWASASE--GDSLQEDTLDLIISALLSVI----GADSVTLKSKYLDWAYE  472 (568)
T ss_pred             -------hhHHHHHHHHHHHHHHhcchhHHHHHHHhh--ccchhHHHHHHHHHHHHHhc----CCceeehhHHHHHHHHH
Confidence                   456665444455666665556778876651  11 11233333333333322    23467888999999999


Q ss_pred             hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhh
Q 005434          594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSET  673 (697)
Q Consensus       594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (697)
                      .++...||++|.++..+||++..++..||++|.++.++    ++..+|++|++|+..+|+++++|.+|..||..+|.+++
T Consensus       473 ~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc----~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en  548 (568)
T KOG2396|consen  473 SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESC----NLANIREYYDRALREFGADSDLWMDYMKEELPLGRPEN  548 (568)
T ss_pred             hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhc----CchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCccc
Confidence            99999999999999999999999999999999999988    79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCccccc
Q 005434          674 ATAVYWRARKTLKDSTALT  692 (697)
Q Consensus       674 a~~vy~ral~~~~~~~~f~  692 (697)
                      +..||+||++++.++.+|+
T Consensus       549 ~~~~~~ra~ktl~~~~~~a  567 (568)
T KOG2396|consen  549 CGQIYWRAMKTLQGESAEA  567 (568)
T ss_pred             ccHHHHHHHHhhChhhhhc
Confidence            9999999999998876654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.4e-65  Score=513.13  Aligned_cols=502  Identities=20%  Similarity=0.310  Sum_probs=424.7

Q ss_pred             chHHHHHHHHHhhhHhHHHHHH-------hCCCCHHHHHHH-HHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHH
Q 005434           41 AMADVVQYRLERMVDELDDLER-------RGLFTRHEISEI-VKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLR  112 (697)
Q Consensus        41 ~ma~~v~~~le~~~~e~~~~~~-------~~~f~~~Ei~~i-~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R  112 (697)
                      +.+..||++.||+|+|..+-+.       .+|.+.+|++++ .|||+.||..|+|+..+++.|++|++||.++.+     
T Consensus        14 ktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e-----   88 (677)
T KOG1915|consen   14 KTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKE-----   88 (677)
T ss_pred             CCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Confidence            5677899999999999998764       366778999999 799999999999999999999999999998865     


Q ss_pred             HhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCH
Q 005434          113 KKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVP  191 (697)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~  191 (697)
                                                 ..|+++||+|||.....++.||++|++++++++. .+++++++||+...|+..
T Consensus        89 ---------------------------~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd  141 (677)
T KOG1915|consen   89 ---------------------------IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD  141 (677)
T ss_pred             ---------------------------HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence                                       4556699999999999999999999999999985 689999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhh
Q 005434          192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWIN  271 (697)
Q Consensus       192 ~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~  271 (697)
                      ++|..|..+| +..||++.||.+|+|++.+.|+ .+.|+.|++||+++.+.                             
T Consensus       142 qlWyKY~ymE-E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykei-----------------------------  190 (677)
T KOG1915|consen  142 QLWYKYIYME-EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEI-----------------------------  190 (677)
T ss_pred             HHHHHHHHHH-HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHH-----------------------------
Confidence            9999999999 7999999999999999999997 79999999999987543                             


Q ss_pred             hccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHH
Q 005434          272 ENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDK  351 (697)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~  351 (697)
                                                            +.||.||++.+-.+|+ +.-|..+..+-.+++   .-..++.
T Consensus       191 --------------------------------------eraR~IYerfV~~HP~-v~~wikyarFE~k~g---~~~~aR~  228 (677)
T KOG1915|consen  191 --------------------------------------ERARSIYERFVLVHPK-VSNWIKYARFEEKHG---NVALARS  228 (677)
T ss_pred             --------------------------------------HHHHHHHHHHheeccc-HHHHHHHHHHHHhcC---cHHHHHH
Confidence                                                  3556666666655554 455555554444433   2356666


Q ss_pred             HHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhc
Q 005434          352 ILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIA  425 (697)
Q Consensus       352 il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~  425 (697)
                      +++.++..+.++   ..+....|..+..             ...+++|+.+|+-||+.+|.++   ++..|+.|+.+.+.
T Consensus       229 VyerAie~~~~d~~~e~lfvaFA~fEe~-------------qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd  295 (677)
T KOG1915|consen  229 VYERAIEFLGDDEEAEILFVAFAEFEER-------------QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD  295 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence            666666666554   2335556666643             5779999999999999999874   99999999987642


Q ss_pred             CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC--cHHHHHHH
Q 005434          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD--SVQLWLLR  503 (697)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~--~~~lW~~~  503 (697)
                      .    .+|      ....+.+.+--|+..+..||.+.+.|.+|++++...|+.++.+++|++|+ ++.|.  ....|.+|
T Consensus       296 ~----~gI------Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI-anvpp~~ekr~W~RY  364 (677)
T KOG1915|consen  296 K----EGI------EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI-ANVPPASEKRYWRRY  364 (677)
T ss_pred             h----hhh------HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCchhHHHHHHHH
Confidence            2    112      23456788899999999999999999999999999999999999999999 78887  35789999


Q ss_pred             HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCC
Q 005434          504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGES  579 (697)
Q Consensus       504 i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~--~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~  579 (697)
                      |.|++.+.-.++.  ...|+++.+++|+.||+.+|+++  +.++|+||+.|+.++.  ..++++++.|+..|+       
T Consensus       365 IYLWinYalyeEl--e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP-------  435 (677)
T KOG1915|consen  365 IYLWINYALYEEL--EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP-------  435 (677)
T ss_pred             HHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC-------
Confidence            9888875321111  11278999999999999999987  6899999999987765  578999999998775       


Q ss_pred             CCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCc-hH
Q 005434          580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNT-SL  657 (697)
Q Consensus       580 ~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~-~l  657 (697)
                      ...++..|+++..+.++++++|++|++.|+..|.++..|++|+.||..+|      +.+|||.||+.|+++.. +.| -+
T Consensus       436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg------dtdRaRaifelAi~qp~ldmpell  509 (677)
T KOG1915|consen  436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG------DTDRARAIFELAISQPALDMPELL  509 (677)
T ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHhcCcccccHHHH
Confidence            45789999999999999999999999999999999999999999999999      99999999999999877 566 79


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          658 WRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       658 W~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      |..||+||...|..++++++|+|.+...+
T Consensus       510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  510 WKAYIDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             HHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999998764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=4.3e-54  Score=448.30  Aligned_cols=504  Identities=18%  Similarity=0.269  Sum_probs=401.9

Q ss_pred             hHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCC
Q 005434           78 RRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGD  157 (697)
Q Consensus        78 R~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~  157 (697)
                      .-.||+.|.|++.++..|+|||+|...                                 ++.++++.||||||..+|++
T Consensus        13 DvpfEeEilRnp~svk~W~RYIe~k~~---------------------------------sp~k~~~~lYERal~~lp~s   59 (835)
T KOG2047|consen   13 DVPFEEEILRNPFSVKCWLRYIEHKAG---------------------------------SPDKQRNLLYERALKELPGS   59 (835)
T ss_pred             ccchHHHHHcCchhHHHHHHHHHHHcc---------------------------------CChHHHHHHHHHHHHHCCCc
Confidence            678999999999999999999999631                                 24677889999999999999


Q ss_pred             HHHHHHHHHHHHHh---c------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--CH
Q 005434          158 IELWFKYMEFCRQR---K------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT--SE  226 (697)
Q Consensus       158 ~~lW~~y~~~~~~~---~------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~--~~  226 (697)
                      +++|..|+..-..+   .      +..+++.|+|||.....+|.+|+.|+.|.+ .+|+++..|..|+|||+..|.  +.
T Consensus        60 ykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~  138 (835)
T KOG2047|consen   60 YKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHD  138 (835)
T ss_pred             hHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhc
Confidence            99999999775442   1      356899999999999999999999999998 799999999999999999995  56


Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhh
Q 005434          227 ELWVEYLRMELTYLNK---LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDL  303 (697)
Q Consensus       227 ~lW~~y~~~E~~~~~~---~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (697)
                      .||..|++|-.+++.+   ++..+++|...+..                                        -++.++.
T Consensus       139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~----------------------------------------~eeyie~  178 (835)
T KOG2047|consen  139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA----------------------------------------REEYIEY  178 (835)
T ss_pred             cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH----------------------------------------HHHHHHH
Confidence            8999999998876644   23334444443321                                        0111122


Q ss_pred             hhh-hhhhHHHHHHHHHHh-------cCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC-hhhHHHHHHhh
Q 005434          304 FRE-QGLRVLQTIYSGAVE-------ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARLK  374 (697)
Q Consensus       304 ~~~-~~~~~a~~iy~~al~-------~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~-~~~w~~~a~~~  374 (697)
                      +.. ...+.|...|...+.       ..+++.++|..+++++.+.+.....-.+++|+..++..||+. +.+|+.+|+++
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            211 123455555665553       347788999999999998874334568999999999999998 88999999999


Q ss_pred             cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHhcCCcc----------cc-cC------
Q 005434          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKE----------ET-RD------  433 (697)
Q Consensus       375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~----lw~~yi~~~~~~~~~~~~----------~~-~~------  433 (697)
                      +.             .|.+++|+++|++|+.++.|++    +++.|+.|++..++...+          ++ .+      
T Consensus       259 Ir-------------~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  259 IR-------------SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HH-------------hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            96             5899999999999999998875    999999999875432110          10 00      


Q ss_pred             ---------------------CCCCch----------------------------------------------hHhHHHH
Q 005434          434 ---------------------SELPSH----------------------------------------------VEHYISH  446 (697)
Q Consensus       434 ---------------------~~~~~~----------------------------------------------~~~~~~~  446 (697)
                                           ++|.++                                              ..+.++.
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence                                 111111                                              1156889


Q ss_pred             HHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----------------CcHHHHHHHHH
Q 005434          447 LLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-----------------DSVQLWLLRIS  505 (697)
Q Consensus       447 ar~~ye~al~~~~~~----~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P-----------------~~~~lW~~~i~  505 (697)
                      ||.+|++|+..+...    ..+|+.|+++++++.+++.|++++++|+..+-+                 .|..+|..|++
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            999999999986554    578999999999999999999999999832211                 25789999999


Q ss_pred             HHHHhcccCCCC-------------C--------------------------------------------------Cccc
Q 005434          506 VEIRCVTRNSFS-------------P--------------------------------------------------SKAD  522 (697)
Q Consensus       506 l~~~~~~~~~~~-------------~--------------------------------------------------~~~~  522 (697)
                      +++..|+.+++.             |                                                  ....
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k  565 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK  565 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence            999988653320             0                                                  0114


Q ss_pred             hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHH
Q 005434          523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA  600 (697)
Q Consensus       523 ~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~A  600 (697)
                      ++++|++|++||+.+||..+..|++.|+++++..|  .++..+|++|..++.++.    ...++..|+.......|+..+
T Consensus       566 lEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~----~l~myni~I~kaae~yGv~~T  641 (835)
T KOG2047|consen  566 LERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ----RLDMYNIYIKKAAEIYGVPRT  641 (835)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhCCccc
Confidence            78888899999988888888888888988888777  567888888887776554    577888899999999999999


Q ss_pred             HHHHHHHHhCCCCC--HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHH
Q 005434          601 REMYKRFLALPRPG--LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATA  676 (697)
Q Consensus       601 R~iy~~~i~~~p~~--~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~  676 (697)
                      |.||++||+..|.+  ..++++|++||.++|      +++|||.||-.+.+.++  .++++|..|-.||.+|||.++.+.
T Consensus       642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklG------EidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke  715 (835)
T KOG2047|consen  642 REIYEKAIESLPDSKAREMCLRFADLETKLG------EIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE  715 (835)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHhhhhh------hHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence            99999999998876  359999999999999      99999999999999988  678999999999999999988888


Q ss_pred             HH
Q 005434          677 VY  678 (697)
Q Consensus       677 vy  678 (697)
                      ..
T Consensus       716 ML  717 (835)
T KOG2047|consen  716 ML  717 (835)
T ss_pred             HH
Confidence            54

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-47  Score=386.52  Aligned_cols=503  Identities=19%  Similarity=0.241  Sum_probs=405.2

Q ss_pred             HHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHH
Q 005434           68 RHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY  147 (697)
Q Consensus        68 ~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iy  147 (697)
                      .++.++|-|.|+.||..|..+..++.-|++||++|+...                                .++++++++
T Consensus        83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk--------------------------------~vNhARNv~  130 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNK--------------------------------QVNHARNVW  130 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhh--------------------------------hHhHHHHHH
Confidence            367789999999999999999999999999999997542                                478999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434          148 RLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (697)
Q Consensus       148 eral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~  226 (697)
                      +||++..|.-.++|.+|+-++...|+ ..++.+|+|++...|. .+.|..|+.||+ ..++++.||.+|+|-+-.||+ .
T Consensus       131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fEl-RykeieraR~IYerfV~~HP~-v  207 (677)
T KOG1915|consen  131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFEL-RYKEIERARSIYERFVLVHPK-V  207 (677)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHH-HhhHHHHHHHHHHHHheeccc-H
Confidence            99999999999999999999999886 5799999999999997 799999999998 899999999999999999997 7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhh
Q 005434          227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE  306 (697)
Q Consensus       227 ~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (697)
                      .-|+.|++||..+|+...+|. |+..+.+.+..+.  ..                             ..+...-+.+.+
T Consensus       208 ~~wikyarFE~k~g~~~~aR~-VyerAie~~~~d~--~~-----------------------------e~lfvaFA~fEe  255 (677)
T KOG1915|consen  208 SNWIKYARFEEKHGNVALARS-VYERAIEFLGDDE--EA-----------------------------EILFVAFAEFEE  255 (677)
T ss_pred             HHHHHHHHHHHhcCcHHHHHH-HHHHHHHHhhhHH--HH-----------------------------HHHHHHHHHHHH
Confidence            999999999999998777776 4333332211100  00                             001112223322


Q ss_pred             --hhhhHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHccccCcHHHHHHH-------HHHHHhhCCCChhhHHHHHHhhc
Q 005434          307 --QGLRVLQTIYSGAVEALPSS--FNLRQRFFEIVEATNLAQSDDMHDKI-------LSDMQRDFLVDPKYWDWLARLKM  375 (697)
Q Consensus       307 --~~~~~a~~iy~~al~~~p~~--~~~~~~~~~~~~~fe~~~~~~~~~~i-------l~~~~~~~p~~~~~w~~~a~~~l  375 (697)
                        +.+++|+.||+-|+.++|++  -++...|..+-.+|+.  ...+.+.|       ++..++..|.+...|..+.++..
T Consensus       256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd--~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e  333 (677)
T KOG1915|consen  256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD--KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE  333 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc--hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence              35789999999999999987  5677777777777763  22233333       67889999999999999999875


Q ss_pred             ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (697)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye  452 (697)
                      .             .|..+..+++|++|+.++|...   .|..||-++.+...-.          +....+++++|.+|.
T Consensus       334 ~-------------~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye----------Ele~ed~ertr~vyq  390 (677)
T KOG1915|consen  334 S-------------VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE----------ELEAEDVERTRQVYQ  390 (677)
T ss_pred             h-------------cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHHH
Confidence            4             3678899999999999998653   6777766666532110          012466899999999


Q ss_pred             HHHHcCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434          453 KAEAMGCL----TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (697)
Q Consensus       453 ~al~~~~~----~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~  528 (697)
                      .|+..-|+    ..++|+.|++|+.++.++..|++++..|+ +.||.. +++..||+++++.++          +++++.
T Consensus       391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-G~cPK~-KlFk~YIelElqL~e----------fDRcRk  458 (677)
T KOG1915|consen  391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-GKCPKD-KLFKGYIELELQLRE----------FDRCRK  458 (677)
T ss_pred             HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-ccCCch-hHHHHHHHHHHHHhh----------HHHHHH
Confidence            99998665    37999999999999999999999999999 999984 899999999999874          899999


Q ss_pred             HHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHH
Q 005434          529 LLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR  606 (697)
Q Consensus       529 ~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~  606 (697)
                      +|++-|...|.  +...|..|+++....+  ++++.+|+.|++-....    -..-+|.+|++|....|.+++||++|++
T Consensus       459 LYEkfle~~Pe--~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld----mpellwkaYIdFEi~~~E~ekaR~LYer  532 (677)
T KOG1915|consen  459 LYEKFLEFSPE--NCYAWSKYAELETSLGDTDRARAIFELAISQPALD----MPELLWKAYIDFEIEEGEFEKARALYER  532 (677)
T ss_pred             HHHHHHhcChH--hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc----cHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence            99999987774  4788999999887766  68999999998643222    2456799999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHhccCCCC----------CcccHHHHHHHHHHHHhhCC-CCc-----hHHHHHHHHHHhcCC
Q 005434          607 FLALPRPGLVLYQNCIELENNLASVG----------DKDSLVNARKLFESALATYD-QNT-----SLWRDYYSTETKLGT  670 (697)
Q Consensus       607 ~i~~~p~~~~~~~~~i~lE~~~~~~~----------~~~~~~raR~lye~al~~~~-~~~-----~lW~~y~~fE~~~G~  670 (697)
                      .+...+. +++|+.++.+|.+.....          +..++.+||++||+|...+. ..+     .+...|.+||..+|+
T Consensus       533 lL~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~  611 (677)
T KOG1915|consen  533 LLDRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGT  611 (677)
T ss_pred             HHHhccc-chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence            9997655 459999999998553211          23478999999999999876 332     588899999999997


Q ss_pred             hhhHHHHHHHH
Q 005434          671 SETATAVYWRA  681 (697)
Q Consensus       671 ~~~a~~vy~ra  681 (697)
                      ......|-.+.
T Consensus       612 ~~d~~~V~s~m  622 (677)
T KOG1915|consen  612 EGDVERVQSKM  622 (677)
T ss_pred             hhhHHHHHHhc
Confidence            77666654443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=1.2e-37  Score=325.90  Aligned_cols=471  Identities=19%  Similarity=0.222  Sum_probs=365.3

Q ss_pred             HHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccc
Q 005434           57 LDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSD  136 (697)
Q Consensus        57 ~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~  136 (697)
                      |.||+...=.+..+|.+|-+.|.-+---...+|+++.-|+.-+.-|..-.+                             
T Consensus       250 LtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagK-----------------------------  300 (913)
T KOG0495|consen  250 LTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGK-----------------------------  300 (913)
T ss_pred             HhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhH-----------------------------
Confidence            345555455567889999999998888888899999999999988865432                             


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434          137 FSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (697)
Q Consensus       137 ~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~  216 (697)
                         ..-++++-.++|...|.+.++|+.-+.+   +....+..+...|+...|+++.||+.++.+|-    +...-++++.
T Consensus       301 ---l~~Ar~~I~~GCe~cprSeDvWLeaiRL---hp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~----~~~~K~RVlR  370 (913)
T KOG0495|consen  301 ---LSVARNLIMKGCEECPRSEDVWLEAIRL---HPPDVAKTVVANAVRFLPTSVRLWLKAADLES----DTKNKKRVLR  370 (913)
T ss_pred             ---HHHHHHHHHHHHhhCCchHHHHHHHHhc---CChHHHHHHHHHHHHhCCCChhhhhhHHhhhh----HHHHHHHHHH
Confidence               3345577888899999999999876654   22345778888899999999999999888873    4566678889


Q ss_pred             HhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchh
Q 005434          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (697)
Q Consensus       217 r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (697)
                      +||...|.|..||-..+.||...                                                         
T Consensus       371 KALe~iP~sv~LWKaAVelE~~~---------------------------------------------------------  393 (913)
T KOG0495|consen  371 KALEHIPRSVRLWKAAVELEEPE---------------------------------------------------------  393 (913)
T ss_pred             HHHHhCCchHHHHHHHHhccChH---------------------------------------------------------
Confidence            99999998888998888776421                                                         


Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcc
Q 005434          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (697)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~  376 (697)
                                    .||.++.+|++.+|.+.++|..+..+.       +.+.++++++++.+..|.++..|+..|+++..
T Consensus       394 --------------darilL~rAveccp~s~dLwlAlarLe-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~  452 (913)
T KOG0495|consen  394 --------------DARILLERAVECCPQSMDLWLALARLE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEA  452 (913)
T ss_pred             --------------HHHHHHHHHHHhccchHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHh
Confidence                          144445555555555555544433211       23445555555555555555555555555443


Q ss_pred             cCCCC------------------------------------------------------CCC---------CcCccchHH
Q 005434          377 DSVSK------------------------------------------------------DGT---------SEDIVPSQM  393 (697)
Q Consensus       377 ~~~~~------------------------------------------------------~~~---------~~~~~~~~~  393 (697)
                      +++-.                                                      .+.         ......+.+
T Consensus       453 ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~  532 (913)
T KOG0495|consen  453 NGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI  532 (913)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH
Confidence            21100                                                      000         011224567


Q ss_pred             HHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005434          394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY  472 (697)
Q Consensus       394 ~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~  472 (697)
                      +.||.||..+|+..|..+ +|..-+.|++.+                  +..+....++++|+...|..+.+|+.|+...
T Consensus       533 ~carAVya~alqvfp~k~slWlra~~~ek~h------------------gt~Esl~Allqkav~~~pkae~lwlM~ake~  594 (913)
T KOG0495|consen  533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSH------------------GTRESLEALLQKAVEQCPKAEILWLMYAKEK  594 (913)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence            899999999999999887 999999998864                  3467899999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Q 005434          473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKF  552 (697)
Q Consensus       473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~  552 (697)
                      +..|+...|+.++..|. ..+|+|.++|...+.++..+.          ..+++|.+|.+|-...|   ...+|..++.+
T Consensus       595 w~agdv~~ar~il~~af-~~~pnseeiwlaavKle~en~----------e~eraR~llakar~~sg---TeRv~mKs~~~  660 (913)
T KOG0495|consen  595 WKAGDVPAARVILDQAF-EANPNSEEIWLAAVKLEFEND----------ELERARDLLAKARSISG---TERVWMKSANL  660 (913)
T ss_pred             HhcCCcHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhccc----------cHHHHHHHHHHHhccCC---cchhhHHHhHH
Confidence            99999999999999999 899999999999999997665          37999999999976555   35899999887


Q ss_pred             HHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCC
Q 005434          553 FMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLAS  630 (697)
Q Consensus       553 ~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~  630 (697)
                      +...+  +.+..+++.|++.++.      .+.+|...-+.+.+.++++.||..|..++..||.++.+|+..+.||+..+ 
T Consensus       661 er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-  733 (913)
T KOG0495|consen  661 ERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-  733 (913)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-
Confidence            76554  6778888999876532      23344433445677899999999999999999999999999999999998 


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          631 VGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       631 ~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                           ++.+||.+++++.-.+|+++.+|+.-+++|.+.|+.+.|..+..+|++.||++
T Consensus       734 -----~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  734 -----QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             -----chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence                 89999999999999999999999999999999999999999999999999877

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=326.95  Aligned_cols=196  Identities=37%  Similarity=0.660  Sum_probs=187.1

Q ss_pred             hHHHHHHHHHhhhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 005434           42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG  121 (697)
Q Consensus        42 ma~~v~~~le~~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~  121 (697)
                      |+++||..+|||+||++||+++||||++||+.|+++|+.||.+|+|+.+.+.||++||+||.++++||.+|.|++...  
T Consensus         1 m~ekiqyymEq~IpEleDl~ekgiFs~dE~~~IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~--   78 (435)
T COG5191           1 MVEKIQYYMEQMIPELEDLKEKGIFSPDELRRIVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVG--   78 (435)
T ss_pred             CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhc--
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999875331  


Q ss_pred             hhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005434          122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW  200 (697)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~  200 (697)
                              -+.+.+|+++.+++..+|.|+..+||+|+++|..|+.+..+.| +..+.++|..||+.||.+..+|+.++.+
T Consensus        79 --------~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~  150 (435)
T COG5191          79 --------KKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAF  150 (435)
T ss_pred             --------ccccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccc
Confidence                    1578899999999999999999999999999999999999888 5789999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005434          201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK  247 (697)
Q Consensus       201 e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~  247 (697)
                      +++..+|++.+|.+|++|||.+|.++.+|.+|++||+.+..++-+|+
T Consensus       151 e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yiTKL~~R~  197 (435)
T COG5191         151 ELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRR  197 (435)
T ss_pred             hhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999888887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=281.08  Aligned_cols=527  Identities=17%  Similarity=0.222  Sum_probs=400.1

Q ss_pred             hhhHhHHH--HHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhc
Q 005434           52 RMVDELDD--LERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKK  129 (697)
Q Consensus        52 ~~~~e~~~--~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~  129 (697)
                      ++.|--+|  |+.-.|-.++.-+.||-.      .++..|+++.-|++-++-|.....                      
T Consensus       313 e~cprSeDvWLeaiRLhp~d~aK~vvA~------Avr~~P~Sv~lW~kA~dLE~~~~~----------------------  364 (913)
T KOG0495|consen  313 EECPRSEDVWLEAIRLHPPDVAKTVVAN------AVRFLPTSVRLWLKAADLESDTKN----------------------  364 (913)
T ss_pred             hhCCchHHHHHHHHhcCChHHHHHHHHH------HHHhCCCChhhhhhHHhhhhHHHH----------------------
Confidence            44455555  567777788887777654      566789999999999998865421                      


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 005434          130 MKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT  209 (697)
Q Consensus       130 ~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~  209 (697)
                                   -..++.+||...|+++.||..-++++.   .+.++.++.||+..+|.+-.+|+.+++++.     ++
T Consensus       365 -------------K~RVlRKALe~iP~sv~LWKaAVelE~---~~darilL~rAveccp~s~dLwlAlarLet-----Ye  423 (913)
T KOG0495|consen  365 -------------KKRVLRKALEHIPRSVRLWKAAVELEE---PEDARILLERAVECCPQSMDLWLALARLET-----YE  423 (913)
T ss_pred             -------------HHHHHHHHHHhCCchHHHHHHHHhccC---hHHHHHHHHHHHHhccchHHHHHHHHHHHH-----HH
Confidence                         114677788888888888887777753   234788888888888888888888888763     67


Q ss_pred             HHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC
Q 005434          210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG  289 (697)
Q Consensus       210 ~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  289 (697)
                      +|+.+++++=+..|+++.||+..+++|...++....-+. +..+...+..+-....-..|+.++...-.     .+..-.
T Consensus       424 nAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki-i~rgl~~L~~ngv~i~rdqWl~eAe~~e~-----agsv~T  497 (913)
T KOG0495|consen  424 NAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI-IDRGLSELQANGVEINRDQWLKEAEACED-----AGSVIT  497 (913)
T ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHhhcceeecHHHHHHHHHHHhh-----cCChhh
Confidence            788888888888888888888888888776654332221 11111112222112233455543221100     000000


Q ss_pred             ----------CCCcc----hhhhhhhhhh-hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHH
Q 005434          290 ----------SQPEN----MESQKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILS  354 (697)
Q Consensus       290 ----------~~~~~----~~~~~~~~~~-~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~  354 (697)
                                .++..    ..|.+..+.+ .....+.||+||..|++-.|.+-.+|.....+-..++   +.+....+++
T Consensus       498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg---t~Esl~Allq  574 (913)
T KOG0495|consen  498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG---TRESLEALLQ  574 (913)
T ss_pred             HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence                      00000    1132222222 2335789999999999999998889988876665554   4678899999


Q ss_pred             HHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccC
Q 005434          355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD  433 (697)
Q Consensus       355 ~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~  433 (697)
                      +++...|+.+.+|.++|+..+.             .|++..||.+..+|++..|.+. +|.+-++++-.           
T Consensus       575 kav~~~pkae~lwlM~ake~w~-------------agdv~~ar~il~~af~~~pnseeiwlaavKle~e-----------  630 (913)
T KOG0495|consen  575 KAVEQCPKAEILWLMYAKEKWK-------------AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-----------  630 (913)
T ss_pred             HHHHhCCcchhHHHHHHHHHHh-------------cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-----------
Confidence            9999999999999999999886             3778899999999999999876 99988887643           


Q ss_pred             CCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc
Q 005434          434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR  513 (697)
Q Consensus       434 ~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~  513 (697)
                             ....++||.+|.+|... ..++.+|..++.|++-.++.++|+.++++++ +.+|+..++|+..-+++.+.+  
T Consensus       631 -------n~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~--  699 (913)
T KOG0495|consen  631 -------NDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQME--  699 (913)
T ss_pred             -------cccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHH--
Confidence                   24478999999999886 4468999999999999999999999999999 899999999999999998876  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH
Q 005434          514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV  591 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~  591 (697)
                              +++.+++.|-..++.+|+  +.+||+..+.+.+..+  -+++.+++++...-+      ....+|..-+.++
T Consensus       700 --------~ie~aR~aY~~G~k~cP~--~ipLWllLakleEk~~~~~rAR~ildrarlkNP------k~~~lwle~Ir~E  763 (913)
T KOG0495|consen  700 --------NIEMAREAYLQGTKKCPN--SIPLWLLLAKLEEKDGQLVRARSILDRARLKNP------KNALLWLESIRME  763 (913)
T ss_pred             --------HHHHHHHHHHhccccCCC--CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC------CcchhHHHHHHHH
Confidence                    489999999999999996  5799999888777665  478999999875322      2456777778888


Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCC----------CC--------------CcccHHHHHHHHHHH
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLAS----------VG--------------DKDSLVNARKLFESA  647 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~----------~~--------------~~~~~~raR~lye~a  647 (697)
                      .+.|+.+.|+.+..+|+.-||.+..+|...|.||..-..          ++              +.-.++++|+.|++|
T Consensus       764 lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra  843 (913)
T KOG0495|consen  764 LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA  843 (913)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864321          11              234789999999999


Q ss_pred             HhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          648 LATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       648 l~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      +..+++..+.|--+..||..||+.+....||.+...+=|.
T Consensus       844 vk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~  883 (913)
T KOG0495|consen  844 VKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT  883 (913)
T ss_pred             HccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999999999988766543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=3.6e-31  Score=277.21  Aligned_cols=477  Identities=13%  Similarity=0.212  Sum_probs=338.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-------CHHHHHHHHHH
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-------NVTAARALMQN  217 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-------~~~~aR~~~~r  217 (697)
                      .-||.-+.++|.+++.|+.||++-......+.+-+|+|||+.+|.+.++|..|++.-.++..       -+...-+.|+|
T Consensus        14 vpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er   93 (835)
T KOG2047|consen   14 VPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER   93 (835)
T ss_pred             cchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence            46788889999999999999998665445689999999999999999999999965433222       25667789999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      |+.+.-+.+.||+.|+.|.+..+.....|+. +..+..++|   ...+.++|.-                          
T Consensus        94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t-fdrALraLp---vtqH~rIW~l--------------------------  143 (835)
T KOG2047|consen   94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRT-FDRALRALP---VTQHDRIWDL--------------------------  143 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhcchHHHHHHH-HHHHHHhCc---hHhhccchHH--------------------------
Confidence            9998888899999999999998887777763 343333332   2233444432                          


Q ss_pred             hhhhhhhhhhh-hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccC-cHHHHHHHHHH---HHhhCCCChhhHHHHHH
Q 005434          298 QKSVDLFREQG-LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQ-SDDMHDKILSD---MQRDFLVDPKYWDWLAR  372 (697)
Q Consensus       298 ~~~~~~~~~~~-~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~-~~~~~~~il~~---~~~~~p~~~~~w~~~a~  372 (697)
                        .+..+...+ .+.+..||++.++-.|.+   ...|++.+..-+..+ ......+++++   ..+.-|.+..+|..+..
T Consensus       144 --yl~Fv~~~~lPets~rvyrRYLk~~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd  218 (835)
T KOG2047|consen  144 --YLKFVESHGLPETSIRVYRRYLKVAPEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD  218 (835)
T ss_pred             --HHHHHHhCCChHHHHHHHHHHHhcCHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence              111122222 247899999999987765   567777776543211 11222223321   22345667888988777


Q ss_pred             hhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcC-C---------------ccccc--
Q 005434          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAP-K---------------KEETR--  432 (697)
Q Consensus       373 ~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~-~---------------~~~~~--  432 (697)
                      +-..+...          ..--..-+++..|+...++.-  +|-..+++......- +               .+-+.  
T Consensus       219 lis~~p~~----------~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~if  288 (835)
T KOG2047|consen  219 LISQNPDK----------VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIF  288 (835)
T ss_pred             HHHhCcch----------hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHH
Confidence            65432111          111124568888988887643  787666654432100 0               00000  


Q ss_pred             --------------CC-CCCch---------------hH-------------------hH--------------HHHHHH
Q 005434          433 --------------DS-ELPSH---------------VE-------------------HY--------------ISHLLT  449 (697)
Q Consensus       433 --------------~~-~~~~~---------------~~-------------------~~--------------~~~ar~  449 (697)
                                    ++ ...+.               ..                   .+              ..+...
T Consensus       289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~  368 (835)
T KOG2047|consen  289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQIN  368 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHH
Confidence                          01 00000               00                   00              234566


Q ss_pred             HHHHHHHc-CCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCc
Q 005434          450 VYEKAEAM-GCL-----TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       450 ~ye~al~~-~~~-----~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      +|.+|+.. +|.     -..+|+.+++|++.+|+++.||.++++|++.++|.-   ..+|..|.++++...         
T Consensus       369 tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~---------  439 (835)
T KOG2047|consen  369 TYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE---------  439 (835)
T ss_pred             HHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh---------
Confidence            78888775 554     257999999999999999999999999997777764   678999999998775         


Q ss_pred             cchHHHHHHHHHHHhhcChh-----------------hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCC
Q 005434          521 ADILSIFELLKCILTKVSAL-----------------ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGF  581 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~-----------------~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~  581 (697)
                       +++.+..+.++|+. +|..                 .|+++|.+|+++++..+  +.++++|++.+..   .+   .++
T Consensus       440 -~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL---ri---aTP  511 (835)
T KOG2047|consen  440 -NFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL---RI---ATP  511 (835)
T ss_pred             -hHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---hc---CCH
Confidence             37888888888864 3322                 16889999999999888  7889999998763   22   278


Q ss_pred             ChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC--HHHHHHHHH-HHhccCCCCCcccHHHHHHHHHHHHhhCC--CCch
Q 005434          582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPG--LVLYQNCIE-LENNLASVGDKDSLVNARKLFESALATYD--QNTS  656 (697)
Q Consensus       582 ~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~--~~~~~~~i~-lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~  656 (697)
                      .+...|+.|+..+.-++.+.++|+++|.+++..  .++|..|+. +-...|..    .++|||.|||+|+..||  ....
T Consensus       512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~----klEraRdLFEqaL~~Cpp~~aKt  587 (835)
T KOG2047|consen  512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT----KLERARDLFEQALDGCPPEHAKT  587 (835)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhcCCHHHHHH
Confidence            889999999999999999999999999986543  458888773 33455533    89999999999999999  4459


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          657 LWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       657 lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      +++.|++||+++|...+|..||+||...++.
T Consensus       588 iyLlYA~lEEe~GLar~amsiyerat~~v~~  618 (835)
T KOG2047|consen  588 IYLLYAKLEEEHGLARHAMSIYERATSAVKE  618 (835)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999988753

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.96  E-value=6.8e-26  Score=234.18  Aligned_cols=448  Identities=14%  Similarity=0.181  Sum_probs=328.6

Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHH
Q 005434           82 EYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW  161 (697)
Q Consensus        82 E~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW  161 (697)
                      +.+|.-+|.++..|-.-|++=.+                                 ..+..++..||+.+..||.+...|
T Consensus        10 ~~rie~nP~di~sw~~lire~qt---------------------------------~~~~~~R~~YEq~~~~FP~s~r~W   56 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQT---------------------------------QPIDKVRETYEQLVNVFPSSPRAW   56 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHcc---------------------------------CCHHHHHHHHHHHhccCCCCcHHH
Confidence            78899999999999887774311                                 136678899999999999999999


Q ss_pred             HHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-------CCCHHHHHHHH
Q 005434          162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-------PTSEELWVEYL  233 (697)
Q Consensus       162 ~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~-------p~~~~lW~~y~  233 (697)
                      +.||+-+...+ +..+.++|.|||..-- +.+||..|+.+..+.+|....+|..+-+|..+.       +.+..+|.+|+
T Consensus        57 ~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi  135 (656)
T KOG1914|consen   57 KLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYI  135 (656)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence            99999998876 6899999999997543 389999999998888899888887776665543       46779999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (697)
Q Consensus       234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (697)
                      .|....-            +            ...|.                                  .+|.++.+|
T Consensus       136 ~FL~~ve------------a------------~gk~e----------------------------------e~QRI~~vR  157 (656)
T KOG1914|consen  136 NFLEGVE------------A------------VGKYE----------------------------------ENQRITAVR  157 (656)
T ss_pred             HHHHccc------------c------------cccHH----------------------------------HHHHHHHHH
Confidence            8864310            0            01111                                  124567899


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (697)
Q Consensus       314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~  393 (697)
                      .+|++|+.+.-.+.   ..+|+-|..|+...+...+++++.+...                                 .+
T Consensus       158 riYqral~tPm~nl---EkLW~DY~~fE~~IN~~tarK~i~e~s~---------------------------------~Y  201 (656)
T KOG1914|consen  158 RIYQRALVTPMHNL---EKLWKDYEAFEQEINIITARKFIGERSP---------------------------------EY  201 (656)
T ss_pred             HHHHHHhcCccccH---HHHHHHHHHHHHHHHHHHHHHHHHhhCH---------------------------------HH
Confidence            99999998865543   4556666677654344556665543222                                 23


Q ss_pred             HHHHHHHHH------Hhhc----CC---------chhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHH
Q 005434          394 QKAIQVYEE------ALKN----VP---------SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (697)
Q Consensus       394 ~~a~~vye~------al~~----~~---------~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~a  454 (697)
                      ..||.+|++      |+..    +|         ...+|..+|++++....... +         ..-...+..-+|+++
T Consensus       202 m~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~-~---------~~~~~~Rv~yayeQ~  271 (656)
T KOG1914|consen  202 MNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL-D---------GTMLTRRVMYAYEQC  271 (656)
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc-c---------ccHHHHHHHHHHHHH
Confidence            334444433      2221    12         12389999999986432111 1         112345888999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          455 EAMGCLTEDIAHRYVTLYLQLGK--------------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       455 l~~~~~~~~lw~~y~~l~~~~~~--------------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      +..-+.++++|.+|..++...++              .++|..++++++......+.-+...+.+.++.....     + 
T Consensus       272 ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~-----n-  345 (656)
T KOG1914|consen  272 LLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDD-----N-  345 (656)
T ss_pred             HHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccc-----c-
Confidence            99989999999999999998887              788999999998544444677888888877654220     1 


Q ss_pred             cchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434          521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~  598 (697)
                       ..+.+-+.+.+.+.... .+-.-+|..|++|..+..  ..++.+|.+|.+.    .......-+..+++++. ..++.+
T Consensus       346 -~~~~~~~~~~~ll~~~~-~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~----~r~~hhVfVa~A~mEy~-cskD~~  418 (656)
T KOG1914|consen  346 -KEKKVHEIYNKLLKIED-IDLTLVYCQYMNFIRRAEGLKAARKIFKKARED----KRTRHHVFVAAALMEYY-CSKDKE  418 (656)
T ss_pred             -hhhhhHHHHHHHHhhhc-cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc----cCCcchhhHHHHHHHHH-hcCChh
Confidence             24556667888765432 222457888888776543  5789999998753    22122333445566654 578999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh--CC-CCchHHHHHHHHHHhcCChhhHH
Q 005434          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YD-QNTSLWRDYYSTETKLGTSETAT  675 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~--~~-~~~~lW~~y~~fE~~~G~~~~a~  675 (697)
                      -|..||+-++...+.++.+-.+|+++-..++      +-+.+|.+||+++..  .+ +..++|..|++||...||...+.
T Consensus       419 ~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~  492 (656)
T KOG1914|consen  419 TAFRIFELGLKKFGDSPEYVLKYLDFLSHLN------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL  492 (656)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence            9999999999999999999999999999888      779999999999998  22 45699999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 005434          676 AVYWRARKTLK  686 (697)
Q Consensus       676 ~vy~ral~~~~  686 (697)
                      +|-.|-...++
T Consensus       493 ~lekR~~~af~  503 (656)
T KOG1914|consen  493 KLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHhcc
Confidence            99999888887

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.92  E-value=2e-21  Score=201.34  Aligned_cols=415  Identities=13%  Similarity=0.155  Sum_probs=300.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH
Q 005434          148 RLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE  227 (697)
Q Consensus       148 eral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~  227 (697)
                      ++-+..+|.|++.|...++........++|.+|++.+..+|..|..|..|++.|+ ...+++.+.++|.|||...-+ -+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            4557889999999999999887776789999999999999999999999999998 789999999999999987654 79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhh
Q 005434          228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ  307 (697)
Q Consensus       228 lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (697)
                      ||..|+..--+..          +...                                                    +
T Consensus        88 LW~lYl~YVR~~~----------~~~~----------------------------------------------------~  105 (656)
T KOG1914|consen   88 LWKLYLSYVRETK----------GKLF----------------------------------------------------G  105 (656)
T ss_pred             HHHHHHHHHHHHc----------cCcc----------------------------------------------------h
Confidence            9999985432110          0000                                                    0


Q ss_pred             hhhHHHHHHHHHHhcC---CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCC
Q 005434          308 GLRVLQTIYSGAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGT  384 (697)
Q Consensus       308 ~~~~a~~iy~~al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~  384 (697)
                      .-.....-|+-+++.+   +.+..+|..|+.+++..+..+                           +++.         
T Consensus       106 ~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~g---------------------------k~ee---------  149 (656)
T KOG1914|consen  106 YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVG---------------------------KYEE---------  149 (656)
T ss_pred             HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccc---------------------------cHHH---------
Confidence            0012233466666665   345678999888886543211                           1111         


Q ss_pred             CcCccchHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-----
Q 005434          385 SEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----  457 (697)
Q Consensus       385 ~~~~~~~~~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~-----  457 (697)
                           ..+++..|.+|++||.+--.  .+||.-|..|+.+........ .+    .......-.||.+|++....     
T Consensus       150 -----~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK-~i----~e~s~~Ym~AR~~~qel~~lt~GL~  219 (656)
T KOG1914|consen  150 -----NQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARK-FI----GERSPEYMNARRVYQELQNLTRGLN  219 (656)
T ss_pred             -----HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHH-HH----HhhCHHHHHHHHHHHHHHHHHhhhc
Confidence                 24789999999999976322  349999999988632100000 00    00113345677777765432     


Q ss_pred             --CCC-----c------HHHHHHHHHHHHhcCCH--------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc--C
Q 005434          458 --GCL-----T------EDIAHRYVTLYLQLGKL--------DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR--N  514 (697)
Q Consensus       458 --~~~-----~------~~lw~~y~~l~~~~~~~--------~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~--~  514 (697)
                        +|.     +      .++|..|++++..++--        .+.--++++++ ..++.++++|..+.......+.+  +
T Consensus       220 r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l-l~l~~~peiWy~~s~yl~~~s~l~~~  298 (656)
T KOG1914|consen  220 RNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL-LYLGYHPEIWYDYSMYLIEISDLLTE  298 (656)
T ss_pred             ccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence              222     1      36899999999876521        12223578888 67888999999998877654321  0


Q ss_pred             CC-CCCc-cchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhhhCCCCCCCCChHHHH
Q 005434          515 SF-SPSK-ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-----HYFDKLVEIALISVAKDGGGESGFSLPSAI  587 (697)
Q Consensus       515 ~~-~~~~-~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-----~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y  587 (697)
                      -+ .++. .-.+++..+|++++..+... ...++..|++|.+.+.     +.....+++++......     ..-++..|
T Consensus       299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-----~tLv~~~~  372 (656)
T KOG1914|consen  299 KGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-----LTLVYCQY  372 (656)
T ss_pred             hcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-----CceehhHH
Confidence            00 0100 12467888999999876543 5677888888887654     24556677776544332     45568899


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh
Q 005434          588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (697)
Q Consensus       588 l~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~  667 (697)
                      +.++.+..|++.||.||.+|.+..-...++|...+.+|.....     +.+-|-.+|+.++..+|+++.+-..|++|...
T Consensus       373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-----D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~  447 (656)
T KOG1914|consen  373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-----DKETAFRIFELGLKKFGDSPEYVLKYLDFLSH  447 (656)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            9999999999999999999999877777899999999987642     78899999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHhh
Q 005434          668 LGTSETATAVYWRARKT  684 (697)
Q Consensus       668 ~G~~~~a~~vy~ral~~  684 (697)
                      .|+-.++|.+|+|++.+
T Consensus       448 lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  448 LNDDNNARALFERVLTS  464 (656)
T ss_pred             hCcchhHHHHHHHHHhc
Confidence            99999999999999998

>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA []

Probab=99.87  E-value=1.9e-22  Score=163.06  Aligned_cols=83  Identities=59%  Similarity=0.921  Sum_probs=75.4

Q ss_pred             HHhhhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhc
Q 005434           50 LERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKK  129 (697)
Q Consensus        50 le~~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~  129 (697)
                      ||+|||||++|+++||||++||++|++||+.|||+|+++++.+.||++||+||+++++|+++|+++++.           
T Consensus         1 LE~~vpele~l~~~~lFt~~EI~~IvkkR~~fEy~L~rr~~~~~Dfl~YI~yE~~L~~L~~~R~~~~~~-----------   69 (83)
T PF08640_consen    1 LERMVPELEDLERKGLFTKEEIREIVKKRRDFEYKLQRRGKKKSDFLRYIEYEMNLEKLRRKRRKRLGI-----------   69 (83)
T ss_pred             CchhhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------
Confidence            699999999999999999999999999999999999999999999999999999999999999887654           


Q ss_pred             ccccccchhHHHHH
Q 005434          130 MKKSVSDFSGVARI  143 (697)
Q Consensus       130 ~~~~~~~~~~~~r~  143 (697)
                      .+.+.+++++.+||
T Consensus        70 ~~~~~~~~~i~~RI   83 (83)
T PF08640_consen   70 KKNSEIEYSIVRRI   83 (83)
T ss_pred             CccchhhhhHhccC
Confidence            14556778877764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=1.1e-17  Score=200.77  Aligned_cols=451  Identities=13%  Similarity=0.074  Sum_probs=241.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.....+...+......| ...+..++++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus       413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a  491 (899)
T TIGR02917       413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKA  491 (899)
T ss_pred             hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence            345566777777777776666665555555544 356677777777777777777777776664 567777777777777


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      +...|.+...|...+.+....+....+... +.....   .+|.  +...|.                            
T Consensus       492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~---~~~~--~~~~~~----------------------------  537 (899)
T TIGR02917       492 LSIEPDFFPAAANLARIDIQEGNPDDAIQR-FEKVLT---IDPK--NLRAIL----------------------------  537 (899)
T ss_pred             HhhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHH---hCcC--cHHHHH----------------------------
Confidence            777777666666666655443332222221 111000   0000  000000                            


Q ss_pred             hhhhhh-hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434          299 KSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (697)
Q Consensus       299 ~~~~~~-~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~  377 (697)
                      .....+ ..+..+.|...|+++++..|.+...+..+...+...+   ....+..+++.+....|.++..|..++..+.. 
T Consensus       538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  613 (899)
T TIGR02917       538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG---QLKKALAILNEAADAAPDSPEAWLMLGRAQLA-  613 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Confidence            000000 1123456666677776666666555555555444332   24556666666666677777777766666653 


Q ss_pred             CCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (697)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~  456 (697)
                                  .++++.|...|+++++..|... .|.........                  .+..+.|...|++++.
T Consensus       614 ------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       614 ------------AGDLNKAVSSFKKLLALQPDSALALLLLADAYAV------------------MKNYAKAITSLKRALE  663 (899)
T ss_pred             ------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHh
Confidence                        3556667777777766655432 33333332221                  2335566666666666


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      .+|.+...|...+.++...|++++|..+++.+. ...|.+...|..........+          +.+.+.+.|++++..
T Consensus       664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g----------~~~~A~~~~~~~~~~  732 (899)
T TIGR02917       664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ-KQHPKAALGFELEGDLYLRQK----------DYPAAIQAYRKALKR  732 (899)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCcCChHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhh
Confidence            666666666666666666666666666666666 455666666655555444443          245566666666654


Q ss_pred             cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434          537 VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG  614 (697)
Q Consensus       537 ~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~  614 (697)
                      .|..   ..+...+..+...+  +.+...+++++...+.      ...+...........|+.++|..+|++++...|..
T Consensus       733 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  803 (899)
T TIGR02917       733 APSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN  803 (899)
T ss_pred             CCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            4432   22222222222222  3344444444432111      11112222333344556666666666666655555


Q ss_pred             HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ...+...+.+....+      + .+|...|++++...|.++.+|..++......|+.+.|..+|+++++.-+
T Consensus       804 ~~~~~~l~~~~~~~~------~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       804 AVVLNNLAWLYLELK------D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHHHHHhcC------c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            555544444444444      3 4455566666655555555555555555555666666666666655443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.86  E-value=2.1e-18  Score=175.01  Aligned_cols=467  Identities=13%  Similarity=0.115  Sum_probs=304.6

Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHH
Q 005434           83 YRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWF  162 (697)
Q Consensus        83 ~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~  162 (697)
                      .+|+-+|+++..|..-|+|-..+++                                ....+.+|+....-||--...|.
T Consensus        33 erIkdNPtnI~S~fqLiq~~~tq~s--------------------------------~~~~re~yeq~~~pfp~~~~aw~   80 (660)
T COG5107          33 ERIKDNPTNILSYFQLIQYLETQES--------------------------------MDAEREMYEQLSSPFPIMEHAWR   80 (660)
T ss_pred             HHhhcCchhHHHHHHHHHHHhhhhh--------------------------------HHHHHHHHHHhcCCCccccHHHH
Confidence            5688899999999999988655432                                33455799999999999999999


Q ss_pred             HHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH-HHHHHH-------HHhhhhCCCCHHHHHHHH
Q 005434          163 KYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT-AARALM-------QNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       163 ~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~-~aR~~~-------~r~l~~~p~~~~lW~~y~  233 (697)
                      -|+.=+...+ +..+..+|.|||...- +.+||..|+.+--..++.++ .+|..+       ..+.-+.|.+..+|.+|.
T Consensus        81 ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~  159 (660)
T COG5107          81 LYMSGELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYG  159 (660)
T ss_pred             HHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHH
Confidence            9998766655 5678899999997544 37899999998743332222 233333       334445578889999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (697)
Q Consensus       234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (697)
                      .|......                        -..|                            +.      .+.++..|
T Consensus       160 ~fle~~~~------------------------~~kw----------------------------Ee------Qqrid~iR  181 (660)
T COG5107         160 LFLEYIEE------------------------LGKW----------------------------EE------QQRIDKIR  181 (660)
T ss_pred             HHHHhccc------------------------cccH----------------------------HH------HHHHHHHH
Confidence            87643110                        0112                            11      13567899


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHH-hhcccCCCCCCCCcCccchH
Q 005434          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR-LKMTDSVSKDGTSEDIVPSQ  392 (697)
Q Consensus       314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~-~~l~~~~~~~~~~~~~~~~~  392 (697)
                      .+|++|+.+.-++   ...+|+-+..|+..-+...+++++...      +|......+. .++.+..+.           
T Consensus       182 ~~Y~ral~tP~~n---leklW~dy~~fE~e~N~~TarKfvge~------sp~ym~ar~~yqe~~nlt~G-----------  241 (660)
T COG5107         182 NGYMRALQTPMGN---LEKLWKDYENFELELNKITARKFVGET------SPIYMSARQRYQEIQNLTRG-----------  241 (660)
T ss_pred             HHHHHHHcCcccc---HHHHHHHHHHHHHHHHHHHHHHHhccc------CHHHHHHHHHHHHHHHHhcc-----------
Confidence            9999999876554   356666677776432334455544321      1221111111 111111110           


Q ss_pred             HHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005434          393 MQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT  470 (697)
Q Consensus       393 ~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~  470 (697)
                      +..+--++.+--..++.  ..-|..+|++++.....-.++           -...+.--+|++++..-+.++++|.+|..
T Consensus       242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~-----------~~~qRi~y~~~q~~~y~~~~~evw~dys~  310 (660)
T COG5107         242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGR-----------PHEQRIHYIHNQILDYFYYAEEVWFDYSE  310 (660)
T ss_pred             ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCC-----------cHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            00000011111111111  115899999987633211111           12347778999999998999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh-------h---
Q 005434          471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA-------L---  540 (697)
Q Consensus       471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~-------~---  540 (697)
                      .+...++-+.|.++.++++ .-+|.   |-..+...+.-..          |-+.++..|++|+..+..       +   
T Consensus       311 Y~~~isd~q~al~tv~rg~-~~sps---L~~~lse~yel~n----------d~e~v~~~fdk~~q~L~r~ys~~~s~~~s  376 (660)
T COG5107         311 YLIGISDKQKALKTVERGI-EMSPS---LTMFLSEYYELVN----------DEEAVYGCFDKCTQDLKRKYSMGESESAS  376 (660)
T ss_pred             HHhhccHHHHHHHHHHhcc-cCCCc---hheeHHHHHhhcc----------cHHHHhhhHHHHHHHHHHHHhhhhhhhhc
Confidence            9999999999999999988 55555   4444443333221          345666667766642110       0   


Q ss_pred             -------h-----------hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHH
Q 005434          541 -------E-----------SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA  600 (697)
Q Consensus       541 -------~-----------~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~A  600 (697)
                             .           -.-+|..++++..+..  +.++++|.++.+..    -..+..-+..+|+++. ..++..-|
T Consensus       377 ~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~----~~~h~vyi~~A~~E~~-~~~d~~ta  451 (660)
T COG5107         377 KVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG----IVGHHVYIYCAFIEYY-ATGDRATA  451 (660)
T ss_pred             cccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC----CCCcceeeeHHHHHHH-hcCCcchH
Confidence                   0           0125666666655433  56788888876431    1122344566777764 46788888


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHH
Q 005434          601 REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVY  678 (697)
Q Consensus       601 R~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy  678 (697)
                      -.||+-++...|.+..+--+|..+-...+      +-+.||.+||.++....++  ..+|..|+++|...|+..++..+-
T Consensus       452 ~~ifelGl~~f~d~~~y~~kyl~fLi~in------de~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe  525 (660)
T COG5107         452 YNIFELGLLKFPDSTLYKEKYLLFLIRIN------DEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE  525 (660)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhC------cHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence            99999999988888888888888887777      7799999999999877644  699999999999999999999999


Q ss_pred             HHHHhhcCCc---cccccCCC
Q 005434          679 WRARKTLKDS---TALTALPD  696 (697)
Q Consensus       679 ~ral~~~~~~---~~f~~~~~  696 (697)
                      +|-...+|.+   ..|.+.|+
T Consensus       526 ~rf~e~~pQen~~evF~Sry~  546 (660)
T COG5107         526 ERFRELVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHHcCcHhHHHHHHHHHh
Confidence            9988888755   37777664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.85  E-value=7.5e-17  Score=193.66  Aligned_cols=448  Identities=11%  Similarity=-0.014  Sum_probs=341.9

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+..++++++..+|++...|...+..+...| ..++...|++++...|.++..|...+.... ..|+++.|..+|+++
T Consensus       447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~  525 (899)
T TIGR02917       447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEKV  525 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            455678889999999999999999998887777 568999999999999999999999999885 789999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      +...|.+...|..++.+....+....+...+ .....   .+|.  +...+                           ..
T Consensus       526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~---~~~~--~~~~~---------------------------~~  572 (899)
T TIGR02917       526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWL-EKAAE---LNPQ--EIEPA---------------------------LA  572 (899)
T ss_pred             HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH---hCcc--chhHH---------------------------HH
Confidence            9999998899998888876654433333211 11100   0000  00000                           00


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                      ........++.+.|..+|+.++...|.+...|..+...+..-+   ..+.+...++++++..|+++..|..++..+..  
T Consensus       573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--  647 (899)
T TIGR02917       573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG---DLNKAVSSFKKLLALQPDSALALLLLADAYAV--  647 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--
Confidence            0111112335678999999999988888888888777775433   35778889999999999999999999888764  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 .++.+.|..+|+++++..|+.. .|...+.....                  .+..+.+..+++.+...
T Consensus       648 -----------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~  698 (899)
T TIGR02917       648 -----------MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA------------------AKRTESAKKIAKSLQKQ  698 (899)
T ss_pred             -----------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Confidence                       4789999999999999888754 55555444332                  24578899999999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      .|.++..|...+..+...|++++|...+++++ ...|++ ..+...+......|          +.+++.+.++++++..
T Consensus       699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g----------~~~~A~~~~~~~l~~~  766 (899)
T TIGR02917       699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSS-QNAIKLHRALLASG----------NTAEAVKTLEAWLKTH  766 (899)
T ss_pred             CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCc-hHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999 677877 56666666665555          3678888899999877


Q ss_pred             ChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCH
Q 005434          538 SALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGL  615 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~  615 (697)
                      |..  ..++...+..+...+  +.+...|++++...+.      ...+...........|+ .+|...|++++...|.+.
T Consensus       767 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~  837 (899)
T TIGR02917       767 PND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP  837 (899)
T ss_pred             CCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence            654  344554455444434  5778888888764321      12222222223345566 889999999999999888


Q ss_pred             HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005434          616 VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRAR  682 (697)
Q Consensus       616 ~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral  682 (697)
                      .++..++.+....+      +++.|..+|+++++..|.++.++..++..-...|+.+.|..++++++
T Consensus       838 ~~~~~~~~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       838 AILDTLGWLLVEKG------EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            88888888888888      89999999999999988999999999999999999999999999876

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.80  E-value=1e-17  Score=189.44  Aligned_cols=247  Identities=19%  Similarity=0.286  Sum_probs=208.1

Q ss_pred             HHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-CCCc----HHHHHHHHHH
Q 005434          398 QVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-GCLT----EDIAHRYVTL  471 (697)
Q Consensus       398 ~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~-~~~~----~~lw~~y~~l  471 (697)
                      +-|++-+...|.+. +|..|..|..+                  ...+++||.+.++|+.. |+..    -.+|+.|.++
T Consensus      1445 eDferlvrssPNSSi~WI~YMaf~Le------------------lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLE------------------LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL 1506 (1710)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhh------------------hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH
Confidence            45677777888776 89999988664                  35689999999999986 5543    2599999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHH
Q 005434          472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALK  551 (697)
Q Consensus       472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~  551 (697)
                      +.-.|.-+...++++||+  ++-+...++.....+....+.          .+.+-++|+..++.+.  ...++|.+|++
T Consensus      1507 En~yG~eesl~kVFeRAc--qycd~~~V~~~L~~iy~k~ek----------~~~A~ell~~m~KKF~--q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERAC--QYCDAYTVHLKLLGIYEKSEK----------NDEADELLRLMLKKFG--QTRKVWIMYAD 1572 (1710)
T ss_pred             HHhhCcHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHhhc----------chhHHHHHHHHHHHhc--chhhHHHHHHH
Confidence            999998888999999999  344556777777777766543          4666777888888775  34799999999


Q ss_pred             HHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccC
Q 005434          552 FFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLA  629 (697)
Q Consensus       552 ~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~  629 (697)
                      ++.++.  +.++.++++|++.+++..    +..+...++..+++.|+-+++|.+|+-.+...|...++|+-||++|.+++
T Consensus      1573 fLl~~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred             HHhcccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence            998876  468999999999876643    66777778888999999999999999999999999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHHHHhhCC---CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          630 SVGDKDSLVNARKLFESALATYD---QNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       630 ~~~~~~~~~raR~lye~al~~~~---~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                            +++.+|.+|||++...-   +...++..|.++|..+||.+++..|-.||+..+.
T Consensus      1649 ------~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1649 ------DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred             ------CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Confidence                  89999999999998754   4569999999999999999999999999998774

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.77  E-value=3.9e-17  Score=184.84  Aligned_cols=212  Identities=19%  Similarity=0.272  Sum_probs=184.0

Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhcccCCCCCCccch
Q 005434          448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPSKADI  523 (697)
Q Consensus       448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~~~~~~~  523 (697)
                      -+-|++.+..+|.+.-+|+.|..+.++.+.++.||++.++|+...+|..    ..+|..|++++..+|+          -
T Consensus      1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~----------e 1513 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT----------E 1513 (1710)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc----------H
Confidence            3568888889999999999999999999999999999999997777753    5799999999999885          4


Q ss_pred             HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434          524 LSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (697)
Q Consensus       524 ~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR  601 (697)
                      +.+.++|++|.+-+.+   ..++...+.++....  +.+..+|+.+++.+.+      ...+|..|++++.+...-++||
T Consensus      1514 esl~kVFeRAcqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred             HHHHHHHHHHHHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHH
Confidence            7788899999987754   345555555554333  4677888888877652      5789999999999999999999


Q ss_pred             HHHHHHHhCCCC--CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 005434          602 EMYKRFLALPRP--GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYW  679 (697)
Q Consensus       602 ~iy~~~i~~~p~--~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~  679 (697)
                      .+.++|+...|.  ..++..++|+||.+.|      +.+|+|.+||..+..+|+..++|.-|++.|.++|+.+.+|.+|+
T Consensus      1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~G------DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYG------DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHhhcC------CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence            999999999888  4679999999999999      88999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 005434          680 RARKT  684 (697)
Q Consensus       680 ral~~  684 (697)
                      |++.-
T Consensus      1659 Rvi~l 1663 (1710)
T KOG1070|consen 1659 RVIEL 1663 (1710)
T ss_pred             HHHhc
Confidence            99853

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.76  E-value=1.2e-15  Score=155.33  Aligned_cols=406  Identities=13%  Similarity=0.175  Sum_probs=278.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434          151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (697)
Q Consensus       151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW  229 (697)
                      ++-+|+++.-|.+.+++....+ +.+++.+|++.+.-+|-.+..|..|+.-|+ ..+++..+..+|-|||...-. .+||
T Consensus        35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~EL-A~~df~svE~lf~rCL~k~l~-ldLW  112 (660)
T COG5107          35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGEL-ARKDFRSVESLFGRCLKKSLN-LDLW  112 (660)
T ss_pred             hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchh-hhhhHHHHHHHHHHHHhhhcc-HhHH
Confidence            6789999999999999998876 678999999999999999999999999998 678999999999999987654 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhh
Q 005434          230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL  309 (697)
Q Consensus       230 ~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (697)
                      ..|+..--+..+        ++.+.                                                     .-
T Consensus       113 ~lYl~YIRr~n~--------~~tGq-----------------------------------------------------~r  131 (660)
T COG5107         113 MLYLEYIRRVNN--------LITGQ-----------------------------------------------------KR  131 (660)
T ss_pred             HHHHHHHHhhCc--------ccccc-----------------------------------------------------hh
Confidence            999854321100        00000                                                     00


Q ss_pred             hHHHHHHHHHHhcC---CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCc
Q 005434          310 RVLQTIYSGAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (697)
Q Consensus       310 ~~a~~iy~~al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~  386 (697)
                      ...-..|+--+..+   |.+-.+|..|.++++..+..                     ..|      +.           
T Consensus       132 ~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~---------------------~kw------Ee-----------  173 (660)
T COG5107         132 FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEEL---------------------GKW------EE-----------  173 (660)
T ss_pred             hhhHHHHHHHHhcccccccccchHHHHHHHHHhcccc---------------------ccH------HH-----------
Confidence            11223444444432   44556888888777554311                     112      11           


Q ss_pred             CccchHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-------
Q 005434          387 DIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-------  457 (697)
Q Consensus       387 ~~~~~~~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~-------  457 (697)
                         +.++++.|..|.+||..--.  .+||..|-.|+........-. .+.    ...-..-.||..|++....       
T Consensus       174 ---Qqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarK-fvg----e~sp~ym~ar~~yqe~~nlt~Gl~v~  245 (660)
T COG5107         174 ---QQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARK-FVG----ETSPIYMSARQRYQEIQNLTRGLSVK  245 (660)
T ss_pred             ---HHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHH-Hhc----ccCHHHHHHHHHHHHHHHHhcccccc
Confidence               36789999999999976332  249999999987632110000 000    0012234566666654321       


Q ss_pred             CC-----------CcHHHHHHHHHHHHhcCC------HHH-HHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434          458 GC-----------LTEDIAHRYVTLYLQLGK------LDE-ARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       458 ~~-----------~~~~lw~~y~~l~~~~~~------~~~-A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      +|           .+.+-|+.|++++...|-      +.+ .--++..++ .-+|-+.++|..|-...+..+        
T Consensus       246 ~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~-~y~~~~~evw~dys~Y~~~is--------  316 (660)
T COG5107         246 NPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQIL-DYFYYAEEVWFDYSEYLIGIS--------  316 (660)
T ss_pred             CchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHhhcc--------
Confidence            22           134569999999987642      232 334678888 788999999999998877554        


Q ss_pred             ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhC-------C--CCC----------
Q 005434          520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKD-------G--GGE----------  578 (697)
Q Consensus       520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~-------~--~~~----------  578 (697)
                        |-+++..+-++++.-+|.     |=..+.++++...  +.+...|+++++.+...       .  +++          
T Consensus       317 --d~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell  389 (660)
T COG5107         317 --DKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELL  389 (660)
T ss_pred             --HHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHH
Confidence              457777777777665553     2233455554332  33444455554443210       0  000          


Q ss_pred             -----CCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434          579 -----SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (697)
Q Consensus       579 -----~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~  653 (697)
                           ...-+|+.|+..+.+..|++.||++|.++.+.+-.+..+|+.++.+|....     .+..-|-.+||.++..+|+
T Consensus       390 ~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-----~d~~ta~~ifelGl~~f~d  464 (660)
T COG5107         390 LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-----GDRATAYNIFELGLLKFPD  464 (660)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-----CCcchHHHHHHHHHHhCCC
Confidence                 011235568888899999999999999999987677788888888886543     1778999999999999999


Q ss_pred             CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          654 NTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       654 ~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ++-+-..|..|....|+.++|+.+|+.++..+.
T Consensus       465 ~~~y~~kyl~fLi~inde~naraLFetsv~r~~  497 (660)
T COG5107         465 STLYKEKYLLFLIRINDEENARALFETSVERLE  497 (660)
T ss_pred             chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999998887764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.76  E-value=1.3e-13  Score=169.30  Aligned_cols=486  Identities=11%  Similarity=-0.002  Sum_probs=264.9

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHH----------------HHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKY----------------MEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y----------------~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~  202 (697)
                      ...+...+++++...|++...|...                +......| +..+..+|++++..+|.++.+=+.|.....
T Consensus        78 ~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~  157 (1157)
T PRK11447         78 SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA  157 (1157)
T ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh
Confidence            3456677777788888777766432                22333334 457777888888777776654333333222


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhcccc------
Q 005434          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGL------  276 (697)
Q Consensus       203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~------  276 (697)
                      ...++.+.|+..|++.++.+|++..++..+.++....+...++...+-.. ....+.  .......|.......      
T Consensus       158 ~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~-~~~~~~--~~~aa~~~~~~l~~~~~~~~~  234 (1157)
T PRK11447        158 KLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM-AKSPAG--RDAAAQLWYGQIKDMPVSDAS  234 (1157)
T ss_pred             hCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-hhCCCc--hHHHHHHHHHHHhccCCChhh
Confidence            24577788888888888888887778877777765544333332211111 000000  000111221110000      


Q ss_pred             ------CC-CCCCCCCCCCC----CCC--------cc--hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 005434          277 ------FM-PLDGEVENTDG----SQP--------EN--MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE  335 (697)
Q Consensus       277 ------~~-~~~~~~~~~~~----~~~--------~~--~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~  335 (697)
                            ++ .+++   ++..    ..+        .+  .........+...+.+.|...|+++++..|++.+.+..+-.
T Consensus       235 ~~~l~~~l~~~p~---~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~  311 (1157)
T PRK11447        235 VAALQKYLQVFSD---GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQ  311 (1157)
T ss_pred             HHHHHHHHHHCCC---chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                  00 0000   0000    000        00  00000112233345789999999999999998887777666


Q ss_pred             HHHHccccCcHHHHHHHHHHHHhhCCCChh--hHHHH------------HHhhcccCCCCCCCCcCccchHHHHHHHHHH
Q 005434          336 IVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWL------------ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE  401 (697)
Q Consensus       336 ~~~~fe~~~~~~~~~~il~~~~~~~p~~~~--~w~~~------------a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye  401 (697)
                      .+..-+   ..+.+...++++++..|+++.  .|..+            +...+.             .++++.|...|+
T Consensus       312 ~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~-------------~g~~~eA~~~~~  375 (1157)
T PRK11447        312 AYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK-------------ANNLAQAERLYQ  375 (1157)
T ss_pred             HHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH-------------CCCHHHHHHHHH
Confidence            665433   357788899999999998743  23221            222222             356778888888


Q ss_pred             HHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH-----------
Q 005434          402 EALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV-----------  469 (697)
Q Consensus       402 ~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~-----------  469 (697)
                      +++...|... .+.........                  .+..+.|...|++++..+|.+...+...+           
T Consensus       376 ~Al~~~P~~~~a~~~Lg~~~~~------------------~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        376 QARQVDNTDSYAVLGLGDVAMA------------------RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence            8888777543 22111111111                  23345555555555555555443332222           


Q ss_pred             -------------------------------HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434          470 -------------------------------TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (697)
Q Consensus       470 -------------------------------~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~  518 (697)
                                                     ..+...|++++|...+++++ ...|++..++.....+....+       
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P~~~~~~~~LA~~~~~~G-------  509 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDPGSVWLTYRLAQDLRQAG-------  509 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC-------
Confidence                                           22233456666666666666 556666555555555554444       


Q ss_pred             CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHH---------------------------------
Q 005434          519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKL---------------------------------  563 (697)
Q Consensus       519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l---------------------------------  563 (697)
                         +.+++...|++++...|..  ...+..+..++...+  +.+...                                 
T Consensus       510 ---~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~  584 (1157)
T PRK11447        510 ---QRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR  584 (1157)
T ss_pred             ---CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence               2455555566655543322  122221111111110  000000                                 


Q ss_pred             ----HHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHH
Q 005434          564 ----VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVN  639 (697)
Q Consensus       564 ----~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~r  639 (697)
                          ++.|+..+...+   ....+......++...|++++|...|++++...|.+...+...+.+-...+      +.+.
T Consensus       585 ~~G~~~eA~~~l~~~p---~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g------~~~e  655 (1157)
T PRK11447        585 DSGKEAEAEALLRQQP---PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG------DLAA  655 (1157)
T ss_pred             HCCCHHHHHHHHHhCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC------CHHH
Confidence                111222222111   133344445666777888888888888888888888887777777776776      7778


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          640 ARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       640 aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      |++.|+.++...|.++.++..........|+.+.|..+|++++...++
T Consensus       656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence            888888777776677777777777667778888888888887776543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.75  E-value=6.4e-14  Score=149.35  Aligned_cols=440  Identities=15%  Similarity=0.166  Sum_probs=273.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      .+.-++.+|...|.++|-....|.+|++++.+.|. ..+.++|+|+++..|.+..+|+.|..+....+|+-+..|..|++
T Consensus        60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~  139 (577)
T KOG1258|consen   60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER  139 (577)
T ss_pred             HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            45788899999999999999999999999999874 67899999999999999999999999998888999999999999


Q ss_pred             hhhhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434          218 GLRVCPT---SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (697)
Q Consensus       218 ~l~~~p~---~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  294 (697)
                      |...+..   +..+|..|+++|.....                                                     
T Consensus       140 A~~~vG~dF~S~~lWdkyie~en~qks-----------------------------------------------------  166 (577)
T KOG1258|consen  140 AKSYVGLDFLSDPLWDKYIEFENGQKS-----------------------------------------------------  166 (577)
T ss_pred             HHHhcccchhccHHHHHHHHHHhcccc-----------------------------------------------------
Confidence            9999985   67999999999943211                                                     


Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCc-h-HHHHHHHHHHHHcccc--CcHHHHHHHHHHHH----hhCCCC-hh
Q 005434          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSS-F-NLRQRFFEIVEATNLA--QSDDMHDKILSDMQ----RDFLVD-PK  365 (697)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~-~-~~~~~~~~~~~~fe~~--~~~~~~~~il~~~~----~~~p~~-~~  365 (697)
                                    .+.+..||++.++. |.. . .+...|.+.+...+..  ...+.+..+-....    ..|... .+
T Consensus       167 --------------~k~v~~iyeRilei-P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e  231 (577)
T KOG1258|consen  167 --------------WKRVANIYERILEI-PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLE  231 (577)
T ss_pred             --------------HHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhH
Confidence                          12333444444432 111 0 0111111111111100  00001111000000    001111 01


Q ss_pred             hHHHHHHhhcccCCCCCCCCcC-cc--------------chHHHHHHHHHHHHhhcC-----C--ch--hHHHHHHHHHH
Q 005434          366 YWDWLARLKMTDSVSKDGTSED-IV--------------PSQMQKAIQVYEEALKNV-----P--SS--MIFDLYTKFLM  421 (697)
Q Consensus       366 ~w~~~a~~~l~~~~~~~~~~~~-~~--------------~~~~~~a~~vye~al~~~-----~--~~--~lw~~yi~~~~  421 (697)
                      .|-...+.-..   +....+.. +.              .......+..|+.+++.-     |  +.  .-|..|+.|++
T Consensus       232 ~~~~~v~~~~~---~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i  308 (577)
T KOG1258|consen  232 ELEIGVKDSTD---PSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI  308 (577)
T ss_pred             HHHHHHhhccC---ccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh
Confidence            11000000000   00000000 00              112234556667776642     1  11  27999999877


Q ss_pred             HHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434          422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (697)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (697)
                      .                  .++.+++...|++|+......+++|+.|+.+++..|+.+-|..++.++++-.+|+.+.+-.
T Consensus       309 ~------------------~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L  370 (577)
T KOG1258|consen  309 T------------------LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL  370 (577)
T ss_pred             h------------------cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence            5                  3557899999999998877789999999999999999999999999999667888888888


Q ss_pred             HHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCC
Q 005434          502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGES  579 (697)
Q Consensus       502 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~  579 (697)
                      .+..++...|+          +..++.++++.....|+-.  .+=..++.++...+  +.+.. .........  .+..+
T Consensus       371 ~~a~f~e~~~n----------~~~A~~~lq~i~~e~pg~v--~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~--~~~~~  435 (577)
T KOG1258|consen  371 LEARFEESNGN----------FDDAKVILQRIESEYPGLV--EVVLRKINWERRKGNLEDANY-KNELYSSIY--EGKEN  435 (577)
T ss_pred             HHHHHHHhhcc----------HHHHHHHHHHHHhhCCchh--hhHHHHHhHHHHhcchhhhhH-HHHHHHHhc--ccccC
Confidence            88888887764          6778888999888786532  22223444444433  22221 111221111  11122


Q ss_pred             CCChHHHHHHHHH----HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--C
Q 005434          580 GFSLPSAIINLVI----QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--Q  653 (697)
Q Consensus       580 ~~~l~~~yl~~~~----~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~  653 (697)
                      ...+...|+++..    -.++.+.|+.++..++...|++..+|..++.|+...++..   +.+-.--+....+....  +
T Consensus       436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~---e~d~~e~~~~~~~~~~~~~~  512 (577)
T KOG1258|consen  436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR---EYDLLEPIDWKELKMLIDFD  512 (577)
T ss_pred             cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch---hhhhhhhHHHHHHhhhcccc
Confidence            3333445666643    3578999999999999999999999999999998876431   33333333333333222  2


Q ss_pred             Cc-hHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          654 NT-SLWRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       654 ~~-~lW~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      ++ ..=..|++|-.-.|....+.+-..+.++.+
T Consensus       513 ~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l~~~  545 (577)
T KOG1258|consen  513 DSRSSTDKYIEFLEWFGIDHKGAQDERPHLKNF  545 (577)
T ss_pred             ccccchHHHHHHHHhccchhHhHhhchHHHHHH
Confidence            22 222227777777777666655555554443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.71  E-value=7.1e-13  Score=152.69  Aligned_cols=220  Identities=11%  Similarity=0.022  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..+.|...|++++..+|.....|+..+.++...|++++|...+++++ ...|++..+|.....+....|          
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~lg~~~~~~g----------  413 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL-KLNSEDPDIYYHRAQLHFIKG----------  413 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------
Confidence            456777888888888778777778777777777888888888888887 677777777777777666555          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~  599 (697)
                      +.+.+...|++++...|..  ...|...+..+...+  +.+...|++++...+.      ...++..+...+...|++++
T Consensus       414 ~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       414 EFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             CHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHccCHHH
Confidence            3677777788887766533  233443333332222  4566677777654321      23344444555566778888


Q ss_pred             HHHHHHHHHhCCCCCHH-------HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434          600 AREMYKRFLALPRPGLV-------LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE  672 (697)
Q Consensus       600 AR~iy~~~i~~~p~~~~-------~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (697)
                      |.+.|++++...|....       ++...+.+....+      +++.|..+|++++...|.+...|...++.....|+.+
T Consensus       486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~------~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~  559 (615)
T TIGR00990       486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ------DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD  559 (615)
T ss_pred             HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence            88888888887664322       1111122222234      7778888888888877766677777788777888888


Q ss_pred             hHHHHHHHHHhhcC
Q 005434          673 TATAVYWRARKTLK  686 (697)
Q Consensus       673 ~a~~vy~ral~~~~  686 (697)
                      .|...|++|++..+
T Consensus       560 eAi~~~e~A~~l~~  573 (615)
T TIGR00990       560 EALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888888876654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.70  E-value=9e-13  Score=161.84  Aligned_cols=400  Identities=14%  Similarity=0.065  Sum_probs=277.7

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE--ELWVEYLRMELTYLNKLKARKVAL  250 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~--~lW~~y~~~E~~~~~~~~~r~~~l  250 (697)
                      ...+...|++++..+|+++.+|...+.... ..|+.+.|+..|+++++..|++.  .-|..++..-.-+....      .
T Consensus       285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~------~  357 (1157)
T PRK11447        285 GGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ------Q  357 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH------H
Confidence            467899999999999999999999999886 79999999999999999999754  34654432111000000      0


Q ss_pred             ccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHH
Q 005434          251 GEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLR  330 (697)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~  330 (697)
                      +.                                                 ..+..++.+.|...|+++++..|++...+
T Consensus       358 g~-------------------------------------------------~~~~~g~~~eA~~~~~~Al~~~P~~~~a~  388 (1157)
T PRK11447        358 GD-------------------------------------------------AALKANNLAQAERLYQQARQVDNTDSYAV  388 (1157)
T ss_pred             HH-------------------------------------------------HHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            00                                                 00111245789999999999999887766


Q ss_pred             HHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch
Q 005434          331 QRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS  410 (697)
Q Consensus       331 ~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~  410 (697)
                      ..+-.++..-+   ..+.+...++++++..|++...+..++..+..              ...++|...++......+..
T Consensus       389 ~~Lg~~~~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~--------------~~~~~A~~~l~~l~~~~~~~  451 (1157)
T PRK11447        389 LGLGDVAMARK---DYAAAERYYQQALRMDPGNTNAVRGLANLYRQ--------------QSPEKALAFIASLSASQRRS  451 (1157)
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------cCHHHHHHHHHhCCHHHHHH
Confidence            66655554432   46789999999999999999888888887643              33566766665432211110


Q ss_pred             h------H-HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 005434          411 M------I-FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK  483 (697)
Q Consensus       411 ~------l-w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~  483 (697)
                      .      + ...+...-. .+              ...+..+.|...|++++..+|.++.++...+.++...|++++|..
T Consensus       452 ~~~~~~~l~~~~~~~~a~-~~--------------~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        452 IDDIERSLQNDRLAQQAE-AL--------------ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHHhhhhHHHHHHH-HH--------------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            0      0 011111000 00              013567899999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHH---------------------------------
Q 005434          484 LAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELL---------------------------------  530 (697)
Q Consensus       484 l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f---------------------------------  530 (697)
                      ++++++ ...|.+...+..+..+....+.          .+.+...+                                 
T Consensus       517 ~l~~al-~~~P~~~~~~~a~al~l~~~~~----------~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        517 LMRRLA-QQKPNDPEQVYAYGLYLSGSDR----------DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999 7889988887765544332221          11111111                                 


Q ss_pred             ----HHHHh---hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434          531 ----KCILT---KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (697)
Q Consensus       531 ----~~al~---~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR  601 (697)
                          ++|+.   ..|.  ...++...+..+...+  +.+...|++++..-+.      ........+..+...|+.++|+
T Consensus       586 ~G~~~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~~eA~  657 (1157)
T PRK11447        586 SGKEAEAEALLRQQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDLAAAR  657 (1157)
T ss_pred             CCCHHHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHH
Confidence                11111   1222  2344555555555444  5677888888764221      2334444555567789999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc------hHHHHHHHHHHhcCChhhHH
Q 005434          602 EMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT------SLWRDYYSTETKLGTSETAT  675 (697)
Q Consensus       602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~------~lW~~y~~fE~~~G~~~~a~  675 (697)
                      +.|++++...|.+...+...+......+      +.+.|.++|++++...+.++      .++.....+....|+.+.|.
T Consensus       658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~  731 (1157)
T PRK11447        658 AQLAKLPATANDSLNTQRRVALAWAALG------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL  731 (1157)
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHhCC------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999988888877777777766777      89999999999999876433      47777899999999999999


Q ss_pred             HHHHHHHhhc
Q 005434          676 AVYWRARKTL  685 (697)
Q Consensus       676 ~vy~ral~~~  685 (697)
                      ..|++|+...
T Consensus       732 ~~y~~Al~~~  741 (1157)
T PRK11447        732 ETYKDAMVAS  741 (1157)
T ss_pred             HHHHHHHhhc
Confidence            9999998644

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.66  E-value=8e-13  Score=144.44  Aligned_cols=393  Identities=13%  Similarity=0.162  Sum_probs=257.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CCHHHHHHHHHHh
Q 005434          149 LAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN------LNVTAARALMQNG  218 (697)
Q Consensus       149 ral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~------~~~~~aR~~~~r~  218 (697)
                      .+...+|-+..+|+.|+.-+....    ...+...|+++| .+-+++.+|..++.|.....      +++...|.+|.|+
T Consensus       138 ~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ra  216 (881)
T KOG0128|consen  138 EMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERA  216 (881)
T ss_pred             HHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHH
Confidence            345678999999999998765432    246889999999 45567999999999987422      3578899999999


Q ss_pred             hhhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434          219 LRVCPT----SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (697)
Q Consensus       219 l~~~p~----~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  294 (697)
                      |+....    ...+|..|.+||..+....+.|+                                               
T Consensus       217 l~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q-----------------------------------------------  249 (881)
T KOG0128|consen  217 LRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ-----------------------------------------------  249 (881)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH-----------------------------------------------
Confidence            998863    34899999999988765433222                                               


Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (697)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~  374 (697)
                                       +...|...+.. |  .+.-...++++..+..        +++..+.... +     .      
T Consensus       250 -----------------v~a~~~~el~~-~--~D~~~~~~~~~~~sk~--------h~~~~~~~~~-~-----~------  289 (881)
T KOG0128|consen  250 -----------------VIALFVRELKQ-P--LDEDTRGWDLSEQSKA--------HVYDVETKKL-D-----D------  289 (881)
T ss_pred             -----------------HHHHHHHHHhc-c--chhhhhHHHHHHHHhc--------chHHHHhccH-H-----H------
Confidence                             22333333332 2  1222223333322210        1111111100 0     0      


Q ss_pred             cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (697)
Q Consensus       375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~  453 (697)
                                    ...+..+-+..|++-++..++.. .|..|++|+...                  +...+...++++
T Consensus       290 --------------a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~------------------G~p~ri~l~~eR  337 (881)
T KOG0128|consen  290 --------------ALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS------------------GDPVRIQLIEER  337 (881)
T ss_pred             --------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc------------------CCchHHHHHHHH
Confidence                          01223344556666666666544 899999999863                  345677888999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHH
Q 005434          454 AEAMGCLTEDIAHRYVTLYLQ-LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (697)
Q Consensus       454 al~~~~~~~~lw~~y~~l~~~-~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~  532 (697)
                      ++...+.+.++|+.|..++-. .+-.+.+..++-+++ +.||...+||.+++--..+...         +.+.+...+++
T Consensus       338 ~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re---------~~~vI~~~l~~  407 (881)
T KOG0128|consen  338 AVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNRE---------EITVIVQNLEK  407 (881)
T ss_pred             HHHhccccHHHHhhhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCc---------chhhHHHHHHH
Confidence            999999999999998765433 234455566788899 8999999999999833334433         35667777888


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhhhhCCCC--CCCCChHHHHHHHHH-HhCCHHHHH
Q 005434          533 ILTKVSALESESLWLMALKFFMNQK--------HYFDKLVEIALISVAKDGGG--ESGFSLPSAIINLVI-QKDGIQQAR  601 (697)
Q Consensus       533 al~~~p~~~~~~lW~~y~~~~~~~~--------~~~~~l~~~a~~~~~~~~~~--~~~~~l~~~yl~~~~-~~~~~~~AR  601 (697)
                      ++...     ..+...|+-|.....        +.++..|..|...+....+.  .....+-..++..+. ..++.+.||
T Consensus       408 ~ls~~-----~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R  482 (881)
T KOG0128|consen  408 DLSMT-----VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAR  482 (881)
T ss_pred             HHHHH-----HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhh
Confidence            77532     223444444433322        24677788877665443211  001112223344433 458899999


Q ss_pred             HHHHHHHhCCCCCHH-HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--Cc-hHHHHHHHHHHhcCChhhHHHH
Q 005434          602 EMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--NT-SLWRDYYSTETKLGTSETATAV  677 (697)
Q Consensus       602 ~iy~~~i~~~p~~~~-~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~~-~lW~~y~~fE~~~G~~~~a~~v  677 (697)
                      .|....+.....+.- .|+.|+.+|...+      +...+|.++.+|......  +. .+...|..||+.+|+.+....+
T Consensus       483 ~iWn~imty~~~~iag~Wle~~~lE~~~g------~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~  556 (881)
T KOG0128|consen  483 EIWNFIMTYGGGSIAGKWLEAINLEREYG------DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC  556 (881)
T ss_pred             HhhhccccCCcchHHHHHHHHHhHHHHhC------CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence            999888877666666 8999999999988      889999988888876542  22 7999999999999999877665


Q ss_pred             HHHHH
Q 005434          678 YWRAR  682 (697)
Q Consensus       678 y~ral  682 (697)
                      -++-+
T Consensus       557 ~~~~~  561 (881)
T KOG0128|consen  557 PEKVL  561 (881)
T ss_pred             HHhhc
Confidence            44433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.63  E-value=1.1e-11  Score=145.79  Aligned_cols=424  Identities=9%  Similarity=-0.036  Sum_probs=282.9

Q ss_pred             cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (697)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y  232 (697)
                      .|-+...---|+....-.| ...+..++.++....|.....|...+.... ..|+...|..++++++...|.+...|...
T Consensus        11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~l   89 (765)
T PRK10049         11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGL   89 (765)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3444444444444444445 457788999998888888888999988885 78999999999999999999888877654


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (697)
Q Consensus       233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (697)
                      +.+....                                                                   ...+.|
T Consensus        90 a~~l~~~-------------------------------------------------------------------g~~~eA  102 (765)
T PRK10049         90 ILTLADA-------------------------------------------------------------------GQYDEA  102 (765)
T ss_pred             HHHHHHC-------------------------------------------------------------------CCHHHH
Confidence            4332210                                                                   123567


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (697)
Q Consensus       313 ~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~  392 (697)
                      ...++++++..|++.. +..+-.++..-+   ....+...++++++..|+++..+..++.....             .+.
T Consensus       103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g---~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-------------~~~  165 (765)
T PRK10049        103 LVKAKQLVSGAPDKAN-LLALAYVYKRAG---RHWDELRAMTQALPRAPQTQQYPTEYVQALRN-------------NRL  165 (765)
T ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------CCC
Confidence            8888888888888877 666655554432   35778889999999999999998888887653             255


Q ss_pred             HHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHH-----
Q 005434          393 MQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI-----  464 (697)
Q Consensus       393 ~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~l-----  464 (697)
                      .+.|...++.++. .|...   .+........-.+.....+.       ..-...++|...|+.++...|.+++.     
T Consensus       166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~-------~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~  237 (765)
T PRK10049        166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK-------ERYAIADRALAQYDALEALWHDNPDATADYQ  237 (765)
T ss_pred             hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh-------HHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence            6778888877665 33210   11111111111110000000       00112377899999998653333222     


Q ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434          465 --AHRYVTLYLQLGKLDEARKLAAKLCSGK---LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA  539 (697)
Q Consensus       465 --w~~y~~l~~~~~~~~~A~~l~~~al~~~---~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~  539 (697)
                        .+..+-.+...|++++|+..+++++ ..   .|.....|..  .+....+          +.+++...|++++..-|.
T Consensus       238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll-~~~~~~P~~a~~~la--~~yl~~g----------~~e~A~~~l~~~l~~~p~  304 (765)
T PRK10049        238 RARIDRLGALLARDRYKDVISEYQRLK-AEGQIIPPWAQRWVA--SAYLKLH----------QPEKAQSILTELFYHPET  304 (765)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCCHHHHHHHH--HHHHhcC----------CcHHHHHHHHHHhhcCCC
Confidence              2222233456789999999999998 44   3666777753  3444444          468888899998864432


Q ss_pred             h--hhHHHHHHHH-HHHH-hhhHHHHHHHHHHHHhhhhCCC----CCCC-----CChHHHHHHHHHHhCCHHHHHHHHHH
Q 005434          540 L--ESESLWLMAL-KFFM-NQKHYFDKLVEIALISVAKDGG----GESG-----FSLPSAIINLVIQKDGIQQAREMYKR  606 (697)
Q Consensus       540 ~--~~~~lW~~y~-~~~~-~~~~~~~~l~~~a~~~~~~~~~----~~~~-----~~l~~~yl~~~~~~~~~~~AR~iy~~  606 (697)
                      .  .....+..+. -++. .+-+.+..+++++....++...    ....     ..........+...|+.++|.+++++
T Consensus       305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~  384 (765)
T PRK10049        305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE  384 (765)
T ss_pred             CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            2  0112222111 1111 2225566677776654321100    0000     11222344556678999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       607 ~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ++...|.+..++...+.+....+      ..+.|.+++++++...|+++.++...+......|+.+.|..++.++++..|
T Consensus       385 al~~~P~n~~l~~~lA~l~~~~g------~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        385 LAYNAPGNQGLRIDYASVLQARG------WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999998888      899999999999999999999999999999999999999999999999988


Q ss_pred             Ccc
Q 005434          687 DST  689 (697)
Q Consensus       687 ~~~  689 (697)
                      ++.
T Consensus       459 d~~  461 (765)
T PRK10049        459 QDP  461 (765)
T ss_pred             CCH
Confidence            663

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.63  E-value=3.2e-13  Score=142.57  Aligned_cols=378  Identities=13%  Similarity=0.036  Sum_probs=219.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH
Q 005434          149 LAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE  227 (697)
Q Consensus       149 ral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~  227 (697)
                      -++++.|.-.+....|++..+..| ...+...|..++...|+....|+..+.-.. .+|+.+.|-..|..+|+.+|+..-
T Consensus       107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~l~c  185 (966)
T KOG4626|consen  107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPDLYC  185 (966)
T ss_pred             hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcchhh
Confidence            578889998999999999888877 568999999999999999999999988886 799999999999999999996311


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhh
Q 005434          228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ  307 (697)
Q Consensus       228 lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (697)
                      .-.       ..++-+                           +                                 .++
T Consensus       186 a~s-------~lgnLl---------------------------k---------------------------------a~G  198 (966)
T KOG4626|consen  186 ARS-------DLGNLL---------------------------K---------------------------------AEG  198 (966)
T ss_pred             hhc-------chhHHH---------------------------H---------------------------------hhc
Confidence            000       001000                           0                                 001


Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (697)
Q Consensus       308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~  387 (697)
                      .+..|...|.+|+++.|.-.-.|..+--.|   ......-.+.+-++++++..|+=...++.++..+-+           
T Consensus       199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f---~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke-----------  264 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQPCFAIAWSNLGCVF---NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE-----------  264 (966)
T ss_pred             ccchhHHHHHHHHhhCCceeeeehhcchHH---hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-----------
Confidence            235678889999988775222233332222   211122344445666777777666666666665533           


Q ss_pred             ccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       388 ~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                        .+.+++|...|++|+..-|...  ..|-++-- .+              -.++.++-|...|++|++..|..++.++.
T Consensus       265 --~~~~d~Avs~Y~rAl~lrpn~A--~a~gNla~-iY--------------yeqG~ldlAI~~Ykral~~~P~F~~Ay~N  325 (966)
T KOG4626|consen  265 --ARIFDRAVSCYLRALNLRPNHA--VAHGNLAC-IY--------------YEQGLLDLAIDTYKRALELQPNFPDAYNN  325 (966)
T ss_pred             --HhcchHHHHHHHHHHhcCCcch--hhccceEE-EE--------------eccccHHHHHHHHHHHHhcCCCchHHHhH
Confidence              2556777777777777666532  01111000 00              02456777888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~  547 (697)
                      .+.-+...|+..+|...|.+|+ .-+|+-.+--.....+.-..+          .++.+..+|++|+...|.-..  -..
T Consensus       326 lanALkd~G~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~----------~~e~A~~ly~~al~v~p~~aa--a~n  392 (966)
T KOG4626|consen  326 LANALKDKGSVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQG----------KIEEATRLYLKALEVFPEFAA--AHN  392 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhc----------cchHHHHHHHHHHhhChhhhh--hhh
Confidence            8877777788888888888888 677765444333333322222          256666667777765553210  000


Q ss_pred             HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH---HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005434          548 MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRFLALPRPGLVLYQNCI  622 (697)
Q Consensus       548 ~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~---~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i  622 (697)
                      -.+..+..++  +.+-.-|+.|+.+         .+....+|...   +...|+.+.|-+.|++||...|.-.+.+...+
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI---------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa  463 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRI---------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA  463 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhc---------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence            0011111111  2233334444321         23333344333   33445555555555555555544444444444


Q ss_pred             HHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434          623 ELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (697)
Q Consensus       623 ~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~  655 (697)
                      .+....|      ++..|-.-|+.|+...|+.+
T Consensus       464 si~kDsG------ni~~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  464 SIYKDSG------NIPEAIQSYRTALKLKPDFP  490 (966)
T ss_pred             HHhhccC------CcHHHHHHHHHHHccCCCCc
Confidence            4444444      44555555555555544443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=99.61  E-value=1.2e-11  Score=128.64  Aligned_cols=441  Identities=14%  Similarity=0.114  Sum_probs=242.8

Q ss_pred             HHhcCCCHHHHHHHHHHHHHh-------------c--------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 005434          151 VMRFKGDIELWFKYMEFCRQR-------------K--------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT  209 (697)
Q Consensus       151 l~~~p~~~~lW~~y~~~~~~~-------------~--------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~  209 (697)
                      +.+-.....=.+.||+++...             |        ..++-.+|.+|+..++.++++|..|+.|.. ..++..
T Consensus        44 L~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~  122 (568)
T KOG2396|consen   44 LQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYG  122 (568)
T ss_pred             HccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-Hhcchh
Confidence            333334566677888885320             1        235668999999999999999999999995 777899


Q ss_pred             HHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC
Q 005434          210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG  289 (697)
Q Consensus       210 ~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  289 (697)
                      ..-++|.++|+.||+++.||+..+..|...+                                                 
T Consensus       123 ~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n-------------------------------------------------  153 (568)
T KOG2396|consen  123 EVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN-------------------------------------------------  153 (568)
T ss_pred             HHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-------------------------------------------------
Confidence            9999999999999999999999998886521                                                 


Q ss_pred             CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCCh-----
Q 005434          290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP-----  364 (697)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~-----  364 (697)
                                       .+.+.||.+|.+++..+|+++.+|..|+++.-.|-.   ....+.   ........+.     
T Consensus       154 -----------------~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~---Kl~~rr---~~~g~~~~~~~~eie  210 (568)
T KOG2396|consen  154 -----------------LNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAE---KLRNRR---EELGLDSSDKDEEIE  210 (568)
T ss_pred             -----------------cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH---HHHHHH---HHhccccchhHHHHH
Confidence                             024678999999999999999999999988765521   000000   0011000000     


Q ss_pred             ---hhHHHHHHhhcccCCCCCCCCcCccchHHHHH----HHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCC
Q 005434          365 ---KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKA----IQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSEL  436 (697)
Q Consensus       365 ---~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a----~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~  436 (697)
                         ..|...+.-.-.....-...+ .+.....+.+    ..+++---...|+.. +|..-+.-+...+.........+.+
T Consensus       211 ~ge~~~~~~~~s~~~~~~~~k~~e-~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~  289 (568)
T KOG2396|consen  211 RGELAWINYANSVDIIKGAVKSVE-LSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQA  289 (568)
T ss_pred             HHHHHHHhhccchhhhhcchhhcc-hHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhh
Confidence               011111000000000000000 0000011111    112211111123333 6665544433322111100000000


Q ss_pred             Cch-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC------HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434          437 PSH-VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (697)
Q Consensus       437 ~~~-~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (697)
                      ... .....++...+|+.++.. ..+..+|-.|+.+....-.      +.....+++++. ...--...+-..|..+.+.
T Consensus       290 ~~~~~~~k~s~~~~v~ee~v~~-l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~-~~~~l~~~~~~~ys~~~l~  367 (568)
T KOG2396|consen  290 KAVEVGSKESRCCAVYEEAVKT-LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAH-ELKLLSECLYKQYSVLLLC  367 (568)
T ss_pred             hchhcchhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhcccccchHHHHHHHHHH
Confidence            000 113456788999999986 4568999999988765422      222333445444 2212223334444444433


Q ss_pred             hcccCCCCCCccchHHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHH
Q 005434          510 CVTRNSFSPSKADILSIFELLKCIL-TKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAII  588 (697)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~f~~al-~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl  588 (697)
                      ..+.          ...+++-++.+ ..+  .++.++|..++..+......+.-+|+.+-....+..    ....+..+.
T Consensus       368 ~~t~----------~~~r~~a~~l~~e~f--~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~----~s~~~~~w~  431 (568)
T KOG2396|consen  368 LNTL----------NEAREVAVKLTTELF--RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV----CSELLISWA  431 (568)
T ss_pred             Hhcc----------chHhHHHHHhhHHHh--cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh----cchhHHHHH
Confidence            3221          11211111211 111  235789998877655333244444444333222221    112222333


Q ss_pred             HHHHHh-CCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 005434          589 NLVIQK-DGIQQAREMYKRFLALP-RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET  666 (697)
Q Consensus       589 ~~~~~~-~~~~~AR~iy~~~i~~~-p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~  666 (697)
                      .+..+. -+...---|+..+++.- |....+-..|.++-+..+      ....||+.|.+.....|-+.+++...++||.
T Consensus       432 s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~------~~~~ark~y~~l~~lpp~sl~l~r~miq~e~  505 (568)
T KOG2396|consen  432 SASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESG------GYKKARKVYKSLQELPPFSLDLFRKMIQFEK  505 (568)
T ss_pred             HHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhc------chHHHHHHHHHHHhCCCccHHHHHHHHHHHh
Confidence            332111 11222223455555442 333456667777766666      7899999999999988888899999999999


Q ss_pred             hc--CChhhHHHHHHHHHhhcCCcc
Q 005434          667 KL--GTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       667 ~~--G~~~~a~~vy~ral~~~~~~~  689 (697)
                      +.  -+..++|.+|++|+..++..+
T Consensus       506 ~~~sc~l~~~r~~yd~a~~~fg~d~  530 (568)
T KOG2396|consen  506 EQESCNLANIREYYDRALREFGADS  530 (568)
T ss_pred             hHhhcCchHHHHHHHHHHHHhCCCh
Confidence            84  348899999999999998443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.61  E-value=7e-13  Score=141.49  Aligned_cols=429  Identities=13%  Similarity=0.088  Sum_probs=262.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHH----------HHh-c---CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 005434          147 YRLAVMRFKGDIELWFKYMEFC----------RQR-K---NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR  212 (697)
Q Consensus       147 yeral~~~p~~~~lW~~y~~~~----------~~~-~---~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR  212 (697)
                      ....+.++|++.+.|-.....-          ... .   ...++.+|...|...|.+..+|..||.+|. ..|++.++-
T Consensus        21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~   99 (577)
T KOG1258|consen   21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSV   99 (577)
T ss_pred             cchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHH
Confidence            3456677787777774332221          111 1   246799999999999999999999999997 899999999


Q ss_pred             HHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCC
Q 005434          213 ALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQP  292 (697)
Q Consensus       213 ~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  292 (697)
                      ++|+||+...|.|..+|+.|+.|-....                                                    
T Consensus       100 ~Vfergv~aip~SvdlW~~Y~~f~~n~~----------------------------------------------------  127 (577)
T KOG1258|consen  100 KVFERGVQAIPLSVDLWLSYLAFLKNNN----------------------------------------------------  127 (577)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhccC----------------------------------------------------
Confidence            9999999999999999999998754210                                                    


Q ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHH
Q 005434          293 ENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (697)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~  369 (697)
                                    .+-+..+..|++|+..++.++   .||..|+++...   ......+-.|++..++.=-+.......
T Consensus       128 --------------~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~---qks~k~v~~iyeRileiP~~~~~~~f~  190 (577)
T KOG1258|consen  128 --------------GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG---QKSWKRVANIYERILEIPLHQLNRHFD  190 (577)
T ss_pred             --------------CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc---cccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence                          011246889999998887653   577777665521   124566777777766531111111111


Q ss_pred             HHHhhcccCCCCCCCCcCccchHHHHHHHHHHH-HhhcC-CchhHHHHHHHHHHHHhcCCccc-ccCC----CCCch--h
Q 005434          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE-ALKNV-PSSMIFDLYTKFLMDMIAPKKEE-TRDS----ELPSH--V  440 (697)
Q Consensus       370 ~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~-al~~~-~~~~lw~~yi~~~~~~~~~~~~~-~~~~----~~~~~--~  440 (697)
                      .-+..+......   .........+....+-++ .+... +..+-|..+++............ +.+.    -+...  .
T Consensus       191 ~f~~~l~~~~~~---~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~  267 (577)
T KOG1258|consen  191 RFKQLLNQNEEK---ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQK  267 (577)
T ss_pred             HHHHHHhcCChh---hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Confidence            101111100000   000000000111111111 00000 01112222222111000000000 0000    00000  0


Q ss_pred             HhHHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434          441 EHYISHLLTVYEKAEAM-----GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~-----~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (697)
                      .......+..||..+.-     +|.+   -..|..|+.+....|+.+.+.-++++++ -+|..-.+.|..|+......+ 
T Consensus       268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl-i~cA~Y~efWiky~~~m~~~~-  345 (577)
T KOG1258|consen  268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL-IPCALYDEFWIKYARWMESSG-  345 (577)
T ss_pred             hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH-hHHhhhHHHHHHHHHHHHHcC-
Confidence            11123455666666653     3443   2579999999999999999999999998 788888899999999888765 


Q ss_pred             cCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH
Q 005434          513 RNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL  590 (697)
Q Consensus       513 ~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~  590 (697)
                               ++.-+..++..+.+..-+ +...+-++++-+.+..+  ..++.++++....+ +.     ...+-..++.|
T Consensus       346 ---------~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg-----~v~~~l~~~~~  409 (577)
T KOG1258|consen  346 ---------DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PG-----LVEVVLRKINW  409 (577)
T ss_pred             ---------chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-Cc-----hhhhHHHHHhH
Confidence                     356666667777664322 23456666777777665  57888888887766 32     34555668999


Q ss_pred             HHHhCCHHHHH---HHHHHHHhCCCC---CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434          591 VIQKDGIQQAR---EMYKRFLALPRP---GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST  664 (697)
Q Consensus       591 ~~~~~~~~~AR---~iy~~~i~~~p~---~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f  664 (697)
                      +.+.|+.+.+.   .+|.......-.   -..++..++.+-.....     +.+.||.++..++...|.+..+|..++.|
T Consensus       410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~-----d~~~a~~~l~~~~~~~~~~k~~~~~~~~~  484 (577)
T KOG1258|consen  410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE-----DADLARIILLEANDILPDCKVLYLELIRF  484 (577)
T ss_pred             HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc-----CHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence            99999999888   444444432211   13478888888887753     88999999999999999999999999999


Q ss_pred             HHhcCCh
Q 005434          665 ETKLGTS  671 (697)
Q Consensus       665 E~~~G~~  671 (697)
                      +..++..
T Consensus       485 ~~~~~~~  491 (577)
T KOG1258|consen  485 ELIQPSG  491 (577)
T ss_pred             HHhCCcc
Confidence            9987543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.60  E-value=1.3e-11  Score=142.37  Aligned_cols=352  Identities=11%  Similarity=-0.008  Sum_probs=226.6

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE  252 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~  252 (697)
                      ...+..+++..+..+|+++..+...+.-.+ ..|+.+.|...|++++...|++...|.....+....             
T Consensus        58 ~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~-------------  123 (656)
T PRK15174         58 TDVGLTLLSDRVLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS-------------  123 (656)
T ss_pred             cchhHHHhHHHHHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-------------
Confidence            456777888888888888877777776665 678888888888888888888777665544322110             


Q ss_pred             ccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH
Q 005434          253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR  332 (697)
Q Consensus       253 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~  332 (697)
                                                                            ++.+.|...|+++++..|++...+..
T Consensus       124 ------------------------------------------------------g~~~~Ai~~l~~Al~l~P~~~~a~~~  149 (656)
T PRK15174        124 ------------------------------------------------------KQYATVADLAEQAWLAFSGNSQIFAL  149 (656)
T ss_pred             ------------------------------------------------------CCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence                                                                  12345677777887777777777666


Q ss_pred             HHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-
Q 005434          333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-  411 (697)
Q Consensus       333 ~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-  411 (697)
                      ....+...+   ..+.+...+..+....|+++..+..++.+ +.             .++++.|..+|+.+++..|... 
T Consensus       150 la~~l~~~g---~~~eA~~~~~~~~~~~P~~~~a~~~~~~l-~~-------------~g~~~eA~~~~~~~l~~~~~~~~  212 (656)
T PRK15174        150 HLRTLVLMD---KELQAISLARTQAQEVPPRGDMIATCLSF-LN-------------KSRLPEDHDLARALLPFFALERQ  212 (656)
T ss_pred             HHHHHHHCC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH-------------cCCHHHHHHHHHHHHhcCCCcch
Confidence            666654433   24566677777777788777766544332 22             3677888888888877654221 


Q ss_pred             -HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 005434          412 -IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE----ARKLAA  486 (697)
Q Consensus       412 -lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~----A~~l~~  486 (697)
                       .+........                  ..+..+.|...|++++..+|.++..+..++..+...|++++    |...++
T Consensus       213 ~~~~~l~~~l~------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~  274 (656)
T PRK15174        213 ESAGLAVDTLC------------------AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR  274 (656)
T ss_pred             hHHHHHHHHHH------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence             1111111111                  12446778888888888888888888888888888888875    788888


Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHH
Q 005434          487 KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLV  564 (697)
Q Consensus       487 ~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~  564 (697)
                      +++ ...|++...|..+..+....+.          .+.+...+++++..-|..  ..++..+...+...+  +.+...|
T Consensus       275 ~Al-~l~P~~~~a~~~lg~~l~~~g~----------~~eA~~~l~~al~l~P~~--~~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        275 HAL-QFNSDNVRIVTLYADALIRTGQ----------NEKAIPLLQQSLATHPDL--PYVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             HHH-hhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888 7788888888888877776653          677778888888765543  344444444333333  4455566


Q ss_pred             HHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434          565 EIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLF  644 (697)
Q Consensus       565 ~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~ly  644 (697)
                      ++++..-+ .     ..........-+...|+.++|.+.|++++...|...            ..      .++.++.-|
T Consensus       342 ~~al~~~P-~-----~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~------~~~ea~~~~  397 (656)
T PRK15174        342 VQLAREKG-V-----TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQ------SFEEGLLAL  397 (656)
T ss_pred             HHHHHhCc-c-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hh------hHHHHHHHH
Confidence            66554211 0     111111123334567888888888888888776542            11      556778888


Q ss_pred             HHHHhhCC-CCch-HHHHHHHH
Q 005434          645 ESALATYD-QNTS-LWRDYYST  664 (697)
Q Consensus       645 e~al~~~~-~~~~-lW~~y~~f  664 (697)
                      +.++...+ .... -|..=..+
T Consensus       398 ~~~~~~~~~~~~~~~W~~~~~~  419 (656)
T PRK15174        398 DGQISAVNLPPERLDWAWEVAG  419 (656)
T ss_pred             HHHHHhcCCccchhhHHHHHhc
Confidence            88888766 3333 57644444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.60  E-value=3.8e-11  Score=141.21  Aligned_cols=403  Identities=8%  Similarity=-0.017  Sum_probs=275.0

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      ..+..+|.++....|.+...|...+......+ ...+..+|++++...|.++.+|...+.... ..|+.+.|...+++++
T Consensus        32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l  110 (765)
T PRK10049         32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLV  110 (765)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence            45668999998888999999999999888877 568999999999999999999999998886 7899999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (697)
                      ...|++.. |.....+....                                                            
T Consensus       111 ~~~P~~~~-~~~la~~l~~~------------------------------------------------------------  129 (765)
T PRK10049        111 SGAPDKAN-LLALAYVYKRA------------------------------------------------------------  129 (765)
T ss_pred             HhCCCCHH-HHHHHHHHHHC------------------------------------------------------------
Confidence            99999887 76665433211                                                            


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC--hh---hHHHHHHhh
Q 005434          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PK---YWDWLARLK  374 (697)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~--~~---~w~~~a~~~  374 (697)
                             +..+.|...|+++++..|++.+.+..+..++..-+   ..+.+...++.+.. .|+.  ..   .....++..
T Consensus       130 -------g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~---~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~  198 (765)
T PRK10049        130 -------GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR---LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLS  198 (765)
T ss_pred             -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhh
Confidence                   12356788999999999998888777666654322   23445555555444 4432  11   111122222


Q ss_pred             cccCCCCCCCCcCccchHH---HHHHHHHHHHhhcCC---chh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHH
Q 005434          375 MTDSVSKDGTSEDIVPSQM---QKAIQVYEEALKNVP---SSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISH  446 (697)
Q Consensus       375 l~~~~~~~~~~~~~~~~~~---~~a~~vye~al~~~~---~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (697)
                      +...        ....+++   ++|...|+..++..|   ...  .-...++..-..+               ..+..+.
T Consensus       199 ~~~~--------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll---------------~~g~~~e  255 (765)
T PRK10049        199 FMPT--------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL---------------ARDRYKD  255 (765)
T ss_pred             cccc--------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH---------------HhhhHHH
Confidence            1100        0011333   788999999886543   221  1111111111111               1345788


Q ss_pred             HHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhcccCCCCCC
Q 005434          447 LLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       447 ar~~ye~al~~~---~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      |+..|++++..+   |.....|.  +..+...|++++|..++++++ ...|.+    ...+..........+        
T Consensus       256 A~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g--------  324 (765)
T PRK10049        256 VISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESE--------  324 (765)
T ss_pred             HHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcc--------
Confidence            999999998875   34445664  778889999999999999998 555554    334444333333333        


Q ss_pred             ccchHHHHHHHHHHHhhcChh-------------hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChH
Q 005434          520 KADILSIFELLKCILTKVSAL-------------ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP  584 (697)
Q Consensus       520 ~~~~~~~~~~f~~al~~~p~~-------------~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~  584 (697)
                        +.+++.+.++++....|..             .........+..+...+  +.+..++++++...+.      ...++
T Consensus       325 --~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~  396 (765)
T PRK10049        325 --NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLR  396 (765)
T ss_pred             --cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence              4788888888887765521             11223334444444444  5677888888754321      34555


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434          585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST  664 (697)
Q Consensus       585 ~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f  664 (697)
                      ...+..+...|..++|.+++++++...|.+..++...+.....++      +.+.|.++++.++...|.++.+-..-...
T Consensus       397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ------EWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            556666778899999999999999999999988888888877787      89999999999999999887554433333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.56  E-value=2.7e-11  Score=139.57  Aligned_cols=288  Identities=9%  Similarity=0.010  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      ..+..+++..+...|++...+...+......| ...+...|++++..+|+++..|...+.... ..|+.+.|...|++++
T Consensus        59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~Al  137 (656)
T PRK15174         59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQAW  137 (656)
T ss_pred             chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            34668999999999999999999987766666 578999999999999999999999999886 7899999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (697)
                      ...|++..+|...+......+                                                           
T Consensus       138 ~l~P~~~~a~~~la~~l~~~g-----------------------------------------------------------  158 (656)
T PRK15174        138 LAFSGNSQIFALHLRTLVLMD-----------------------------------------------------------  158 (656)
T ss_pred             HhCCCcHHHHHHHHHHHHHCC-----------------------------------------------------------
Confidence            999999888887766543322                                                           


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC-hhhHHHHHHhhcccC
Q 005434          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARLKMTDS  378 (697)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~-~~~w~~~a~~~l~~~  378 (697)
                              ..+.|..+|+.++...|++.+.+..+..++ .  . .....+..+++.+++..|.. ...+..++.....  
T Consensus       159 --------~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~-~--~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~--  224 (656)
T PRK15174        159 --------KELQAISLARTQAQEVPPRGDMIATCLSFL-N--K-SRLPEDHDLARALLPFFALERQESAGLAVDTLCA--  224 (656)
T ss_pred             --------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H--c-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH--
Confidence                    123455556555555555544443322111 1  1 12345556666666665433 2222222333222  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 .++.+.|...|++++...|... .+..+........     +         .......|...|++++..
T Consensus       225 -----------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-----~---------~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        225 -----------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG-----R---------SREAKLQAAEHWRHALQF  279 (656)
T ss_pred             -----------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----C---------chhhHHHHHHHHHHHHhh
Confidence                       3556667777777776665543 3332222222110     0         001112467777777777


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      +|.+...|..++..+...|++++|...+++++ ...|++..++..+.......|          +.+.+.+.|++++...
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G----------~~~eA~~~l~~al~~~  348 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVG----------QYTAASDEFVQLAREK  348 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhC
Confidence            77777777777777777777777777777777 566777666666665555544          3566666677766554


Q ss_pred             C
Q 005434          538 S  538 (697)
Q Consensus       538 p  538 (697)
                      |
T Consensus       349 P  349 (656)
T PRK15174        349 G  349 (656)
T ss_pred             c
Confidence            4

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.52  E-value=1.9e-11  Score=129.40  Aligned_cols=358  Identities=13%  Similarity=0.058  Sum_probs=247.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ...++..+|+.+++.-|..++.|...+.-+...| ...+-..|..+|+++|.....--...... ...|.++.|..-|.+
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl-ka~Grl~ea~~cYlk  209 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL-KAEGRLEEAKACYLK  209 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH-HhhcccchhHHHHHH
Confidence            3667889999999999999999999988777776 46789999999999998665555555555 468999999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      |++..|.-.-.|....-.-...                                                          
T Consensus       210 Ai~~qp~fAiawsnLg~~f~~~----------------------------------------------------------  231 (966)
T KOG4626|consen  210 AIETQPCFAIAWSNLGCVFNAQ----------------------------------------------------------  231 (966)
T ss_pred             HHhhCCceeeeehhcchHHhhc----------------------------------------------------------
Confidence            9999996434444332211111                                                          


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~  377 (697)
                               ++.-.|..-|++|++--|.-.+....+=..+....   ..+.+-.-+.+++..-|+....+..+|-.+.+ 
T Consensus       232 ---------Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~---~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-  298 (966)
T KOG4626|consen  232 ---------GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR---IFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-  298 (966)
T ss_pred             ---------chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh---cchHHHHHHHHHHhcCCcchhhccceEEEEec-
Confidence                     12235566677777655543333333333333221   23455566677777777777776666666655 


Q ss_pred             CCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                  +|.++.|+..|++||..-|.-.  ++|-++-... .              ..+.+..+...|.+|+..
T Consensus       299 ------------qG~ldlAI~~Ykral~~~P~F~--~Ay~NlanAL-k--------------d~G~V~ea~~cYnkaL~l  349 (966)
T KOG4626|consen  299 ------------QGLLDLAIDTYKRALELQPNFP--DAYNNLANAL-K--------------DKGSVTEAVDCYNKALRL  349 (966)
T ss_pred             ------------cccHHHHHHHHHHHHhcCCCch--HHHhHHHHHH-H--------------hccchHHHHHHHHHHHHh
Confidence                        4889999999999998877532  4554443221 0              136688999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      +|..++.-...+..+...|.++.|..+|.+++ ..+|....-......+..+.|.          .+.+..-|..||+.-
T Consensus       350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa~i~kqqgn----------l~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  350 CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLASIYKQQGN----------LDDAIMCYKEALRIK  418 (966)
T ss_pred             CCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHHHHHHhccc----------HHHHHHHHHHHHhcC
Confidence            99999988889999999999999999999999 7888876666666666666553          677778899998766


Q ss_pred             ChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH---HHHHhCCHHHHHHHHHHHHhCCC
Q 005434          538 SALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN---LVIQKDGIQQAREMYKRFLALPR  612 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~---~~~~~~~~~~AR~iy~~~i~~~p  612 (697)
                      |.-  ..-..-.-.-+...+  ..+.+.|.+|++.         .+.+..+...   .....|++..|.+-|+.|+++.|
T Consensus       419 P~f--Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~---------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  419 PTF--ADALSNMGNTYKEMGDVSAAIQCYTRAIQI---------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             chH--HHHHHhcchHHHHhhhHHHHHHHHHHHHhc---------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            532  111111111111111  3456678888864         3444444433   34568999999999999999998


Q ss_pred             CCHHHHH
Q 005434          613 PGLVLYQ  619 (697)
Q Consensus       613 ~~~~~~~  619 (697)
                      .....+.
T Consensus       488 DfpdA~c  494 (966)
T KOG4626|consen  488 DFPDAYC  494 (966)
T ss_pred             CCchhhh
Confidence            8766443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.52  E-value=3.3e-10  Score=130.58  Aligned_cols=385  Identities=10%  Similarity=-0.063  Sum_probs=244.3

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE  252 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~  252 (697)
                      +..+...|++++...|+ +.+|...+...+ ..|+.+.|...+++++...|+....|..-.......+..          
T Consensus       143 ~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~----------  210 (615)
T TIGR00990       143 FNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY----------  210 (615)
T ss_pred             HHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------
Confidence            57899999999999996 788888877775 789999999999999999999887777665544332211          


Q ss_pred             ccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH
Q 005434          253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR  332 (697)
Q Consensus       253 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~  332 (697)
                                                                               +.|..-|..+....+........
T Consensus       211 ---------------------------------------------------------~eA~~~~~~~~~~~~~~~~~~~~  233 (615)
T TIGR00990       211 ---------------------------------------------------------ADALLDLTASCIIDGFRNEQSAQ  233 (615)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHhCCCccHHHHH
Confidence                                                                     12222222222111111010011


Q ss_pred             HHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-
Q 005434          333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-  411 (697)
Q Consensus       333 ~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-  411 (697)
                      .+....       ...+.......++..|.+...|..++.+....  .            .......++...+..+... 
T Consensus       234 ~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~  292 (615)
T TIGR00990       234 AVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF--R------------PKPRPAGLEDSNELDEETGN  292 (615)
T ss_pred             HHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc--c------------CCcchhhhhccccccccccc
Confidence            100000       01122223334445555544455444433110  0            0000111222222111111 


Q ss_pred             -HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          412 -IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (697)
Q Consensus       412 -lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~---~~~~~lw~~y~~l~~~~~~~~~A~~l~~~  487 (697)
                       ....+.......                ..+..+.+...|++++..+   |.....|...+.++...|++++|...+++
T Consensus       293 ~~~~l~~~~~e~~----------------~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k  356 (615)
T TIGR00990       293 GQLQLGLKSPESK----------------ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK  356 (615)
T ss_pred             chHHHHHHHHHhh----------------hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             111221111110                1245778999999999864   55567788888999999999999999999


Q ss_pred             HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHH
Q 005434          488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVE  565 (697)
Q Consensus       488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~  565 (697)
                      ++ ...|.+...|.....+....+          +.+++.+.|++++..-|..  ..+|......+...+  +.+...|+
T Consensus       357 al-~l~P~~~~~~~~la~~~~~~g----------~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~  423 (615)
T TIGR00990       357 SI-ELDPRVTQSYIKRASMNLELG----------DPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFAQAGKDYQ  423 (615)
T ss_pred             HH-HcCCCcHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99 789999999988887776665          4788999999999876543  466666555444444  56778888


Q ss_pred             HHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434          566 IALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFE  645 (697)
Q Consensus       566 ~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye  645 (697)
                      +++...+.      ....+..........|++++|...|++++...|.....+..+..+....|      +++.|.+.|+
T Consensus       424 kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g------~~~~A~~~~~  491 (615)
T TIGR00990       424 KSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN------KFDEAIEKFD  491 (615)
T ss_pred             HHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc------CHHHHHHHHH
Confidence            88764221      11122222333567899999999999999999998888888888888888      8999999999


Q ss_pred             HHHhhCCCCchH-------HHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          646 SALATYDQNTSL-------WRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       646 ~al~~~~~~~~l-------W~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      +|+...+.....       +.....+....|+.+.|..++++|+..-++.
T Consensus       492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~  541 (615)
T TIGR00990       492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC  541 (615)
T ss_pred             HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            999988743222       2222233334699999999999999876544

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.47  E-value=4.2e-11  Score=131.21  Aligned_cols=403  Identities=12%  Similarity=0.141  Sum_probs=251.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHhhhhCCCCHH
Q 005434          151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD--HNLNVTAARALMQNGLRVCPTSEE  227 (697)
Q Consensus       151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~--~~~~~~~aR~~~~r~l~~~p~~~~  227 (697)
                      +...+.++..-..++.++.+.| ..+++..-..+-.+.|.+|.+|+.++.-+..  ..++...+-..|++||--. .+..
T Consensus       106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~  184 (881)
T KOG0128|consen  106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVP  184 (881)
T ss_pred             hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccch
Confidence            3445556666666677777777 4678888788888899999999999886642  3367888899999999665 3689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhh
Q 005434          228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ  307 (697)
Q Consensus       228 lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (697)
                      ||.+|+.+-...++.          +.                        .                          ..
T Consensus       185 iw~e~~~y~~~~~~~----------~~------------------------~--------------------------~~  204 (881)
T KOG0128|consen  185 IWEEVVNYLVGFGNV----------AK------------------------K--------------------------SE  204 (881)
T ss_pred             HHHHHHHHHHhcccc----------cc------------------------c--------------------------cc
Confidence            999999887654321          00                        0                          01


Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (697)
Q Consensus       308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~  387 (697)
                      +++..|.+|.+|+......+.-...+|.++..|+...   +...                                    
T Consensus       205 d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~---l~n~------------------------------------  245 (881)
T KOG0128|consen  205 DYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTY---LCNV------------------------------------  245 (881)
T ss_pred             cchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHH---HHhH------------------------------------
Confidence            3456789999999877665544556666666654210   0000                                    


Q ss_pred             ccchHHHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHH
Q 005434          388 IVPSQMQKAIQVYEEALKNVP--SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA  465 (697)
Q Consensus       388 ~~~~~~~~a~~vye~al~~~~--~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw  465 (697)
                          ..++....+...+..--  +..-|..+-.+...++......      .......+.+.+..+++.+...+.....|
T Consensus       246 ----~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~------~~~a~~~l~~~~~~~e~~~q~~~~~~q~~  315 (881)
T KOG0128|consen  246 ----EQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKK------LDDALKNLAKILFKFERLVQKEPIKDQEW  315 (881)
T ss_pred             ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhcc------HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence                01111122222221110  0001111111100000000000      00012334566777888888877778899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHH
Q 005434          466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL  545 (697)
Q Consensus       466 ~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~l  545 (697)
                      .+|++++...|.+.....++++++ ...+.+..+|..|-.+.-..    ..+     .+....++-+|+..+|-  +..|
T Consensus       316 ~~yidfe~~~G~p~ri~l~~eR~~-~E~~~~~~~wi~y~~~~d~e----Lkv-----~~~~~~~~~ra~R~cp~--tgdL  383 (881)
T KOG0128|consen  316 MSYIDFEKKSGDPVRIQLIEERAV-AEMVLDRALWIGYGVYLDTE----LKV-----PQRGVSVHPRAVRSCPW--TGDL  383 (881)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHH-HhccccHHHHhhhhhhcccc----ccc-----ccccccccchhhcCCch--HHHH
Confidence            999999999999999888999999 78888899999876433211    111     12333457778877764  4789


Q ss_pred             HHHHHHHHHhhhHH---HHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH------hCCHHHHHHHHHHHHh-------
Q 005434          546 WLMALKFFMNQKHY---FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ------KDGIQQAREMYKRFLA-------  609 (697)
Q Consensus       546 W~~y~~~~~~~~~~---~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~------~~~~~~AR~iy~~~i~-------  609 (697)
                      |..|+.-++++.+.   +-..+.+++..         ...+...|+-+...      ...++.-|+.|..|..       
T Consensus       384 ~~rallAleR~re~~~vI~~~l~~~ls~---------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~  454 (881)
T KOG0128|consen  384 WKRALLALERNREEITVIVQNLEKDLSM---------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG  454 (881)
T ss_pred             HHHHHHHHHhcCcchhhHHHHHHHHHHH---------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence            99887444444432   22334444321         11222233333222      2344555556665543       


Q ss_pred             C-CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          610 L-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-SLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       610 ~-~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      . ..+.+.+.+.++.+|..+..     +++.+|.++...+..-+.+. ..|+.|+++|..+|+...+|.++.+|.....+
T Consensus       455 ~~~Dt~~~~~q~wA~~E~sl~~-----nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~  529 (881)
T KOG0128|consen  455 DQLDTRTEVLQLWAQVEASLLK-----NMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVD  529 (881)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhh-----chhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcC
Confidence            3 44567788999999998863     89999999999987755554 49999999999999999999999999888766


Q ss_pred             cc
Q 005434          688 ST  689 (697)
Q Consensus       688 ~~  689 (697)
                      +.
T Consensus       530 ~~  531 (881)
T KOG0128|consen  530 PE  531 (881)
T ss_pred             ch
Confidence            63

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.44  E-value=5.1e-13  Score=137.45  Aligned_cols=141  Identities=18%  Similarity=0.302  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh-CCHHHHHHHHHHHHhCCCCCHHHHHH
Q 005434          544 SLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK-DGIQQAREMYKRFLALPRPGLVLYQN  620 (697)
Q Consensus       544 ~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~-~~~~~AR~iy~~~i~~~p~~~~~~~~  620 (697)
                      -+|+.|+.++.+.+  +.+|.+|++|++.  +    .....++..|+.++... ++.+.|++||+++++..|.+..+|..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~   75 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--K----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--C----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            36999999887765  6799999999731  1    12567788888887774 56666999999999999999999999


Q ss_pred             HHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--C-CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc---cccccC
Q 005434          621 CIELENNLASVGDKDSLVNARKLFESALATYD--Q-NTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS---TALTAL  694 (697)
Q Consensus       621 ~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~-~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~---~~f~~~  694 (697)
                      |++++..++      ++++||.+||+++...+  . ...+|..|++||.++|+.+.+.+|+.|+...+++.   ..|+..
T Consensus        76 Y~~~l~~~~------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r  149 (280)
T PF05843_consen   76 YLDFLIKLN------DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDR  149 (280)
T ss_dssp             HHHHHHHTT-------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred             HHHHHHHhC------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999999998      99999999999999988  3 45899999999999999999999999999999754   267766


Q ss_pred             CC
Q 005434          695 PD  696 (697)
Q Consensus       695 ~~  696 (697)
                      |.
T Consensus       150 y~  151 (280)
T PF05843_consen  150 YS  151 (280)
T ss_dssp             T-
T ss_pred             hh
Confidence            63

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.43  E-value=3.2e-09  Score=118.59  Aligned_cols=464  Identities=13%  Similarity=0.091  Sum_probs=236.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      +..-|+||+...|.++..-.....+.....    +.++-.++.++-..+|.+|.+=...|.+.+ ..|++..|-.+..-+
T Consensus       218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~a  296 (1018)
T KOG2002|consen  218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHA  296 (1018)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHH
Confidence            445666677777766666655555544322    345566666666666766666666666555 456666666666666


Q ss_pred             hhhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434          219 LRVCPTSEEL---WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (697)
Q Consensus       219 l~~~p~~~~l---W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (697)
                      +...-.....   .....+..-..|+...+-+.+..... .   ++             +.++ ++          ..+ 
T Consensus       297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k-~---~~-------------d~~~-l~----------~~G-  347 (1018)
T KOG2002|consen  297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK-A---DN-------------DNFV-LP----------LVG-  347 (1018)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-c---CC-------------CCcc-cc----------ccc-
Confidence            6655322222   12222333333332222221111100 0   00             0000 00          000 


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHcc-ccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434          296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (697)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe-~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~  374 (697)
                         .....+...+++.+...|++-++..|+..+.-.-+=-++.... .....+.+..++.+..+..|.+...|+.+|++.
T Consensus       348 ---lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  348 ---LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             ---hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence               0001112235678889999999999998655433333333221 111346788889999999999999999999998


Q ss_pred             cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHH--HHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDL--YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (697)
Q Consensus       375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~--yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye  452 (697)
                      ......      .+ .+.+.+|+.++......+|... -+.  -..|.                    .+.+..|...|.
T Consensus       425 e~~d~~------~s-L~~~~~A~d~L~~~~~~ip~E~-LNNvaslhf~--------------------~g~~~~A~~~f~  476 (1018)
T KOG2002|consen  425 EQTDPW------AS-LDAYGNALDILESKGKQIPPEV-LNNVASLHFR--------------------LGNIEKALEHFK  476 (1018)
T ss_pred             HhcChH------HH-HHHHHHHHHHHHHcCCCCCHHH-HHhHHHHHHH--------------------hcChHHHHHHHH
Confidence            652100      00 2233444444444444444321 111  11121                    234566666666


Q ss_pred             HHHHc-----CCC---cHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccc
Q 005434          453 KAEAM-----GCL---TEDI--AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKAD  522 (697)
Q Consensus       453 ~al~~-----~~~---~~~l--w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~  522 (697)
                      .|...     ++.   +..+  =...+.+++..++++.|.++|...+ ..+|.-.+-+.+..-+....+          .
T Consensus       477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il-kehp~YId~ylRl~~ma~~k~----------~  545 (1018)
T KOG2002|consen  477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL-KEHPGYIDAYLRLGCMARDKN----------N  545 (1018)
T ss_pred             HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHCchhHHHHHHhhHHHHhcc----------C
Confidence            66554     111   1222  3344677777778888888888877 677775555544432332222          2


Q ss_pred             hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH--------H
Q 005434          523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQKH--YFDKLVEIALISVAKDGGGESGFSLPSAIINLV--------I  592 (697)
Q Consensus       523 ~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~--~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~--------~  592 (697)
                      ...+...+..++....  .....|.++-+++....+  .+.+-|++.++.............+-..|+.-+        .
T Consensus       546 ~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek  623 (1018)
T KOG2002|consen  546 LYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK  623 (1018)
T ss_pred             cHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence            3445555666665332  124566666655544432  122222222221111100000111112222221        1


Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE  672 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (697)
                      ..+..++|.++|+++|...|.+...-..-.-+--..+      .+..||.+|-+..+.-.+++++|+.-+.--...|..-
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg------~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG------RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR  697 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc------CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence            2355677777777777776655321111111111122      5677777777777654456777777777766677777


Q ss_pred             hHHHHHHHHHhhcC
Q 005434          673 TATAVYWRARKTLK  686 (697)
Q Consensus       673 ~a~~vy~ral~~~~  686 (697)
                      .|.++|+++++.+-
T Consensus       698 ~AIqmYe~~lkkf~  711 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFY  711 (1018)
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777777775

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.42  E-value=8.4e-13  Score=136.76  Aligned_cols=269  Identities=21%  Similarity=0.164  Sum_probs=106.7

Q ss_pred             hCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcC--Cchh-HHHHHHHHHHHHhcCCcccccCCC
Q 005434          359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV--PSSM-IFDLYTKFLMDMIAPKKEETRDSE  435 (697)
Q Consensus       359 ~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~--~~~~-lw~~yi~~~~~~~~~~~~~~~~~~  435 (697)
                      .+|.  ...+.+|..++.             .+++++|.+++++++...  |+.. .|..+..+...             
T Consensus         5 ~~~~--~~~l~~A~~~~~-------------~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-------------   56 (280)
T PF13429_consen    5 FGPS--EEALRLARLLYQ-------------RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-------------   56 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc--cccccccccccc-------------cccccccccccccccccccccccccccccccccccc-------------
Confidence            3455  233466777765             488999999999888776  3333 77766655443             


Q ss_pred             CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434          436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS  515 (697)
Q Consensus       436 ~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~  515 (697)
                           .+..+.++..|++.+..++.++.....++.+ ...+++++|..+++++. ... ++...|..++.+....+    
T Consensus        57 -----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~-~~~-~~~~~l~~~l~~~~~~~----  124 (280)
T PF13429_consen   57 -----LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAY-ERD-GDPRYLLSALQLYYRLG----  124 (280)
T ss_dssp             ---------------------------------------------------------------------H-HHHTT----
T ss_pred             -----ccccccccccccccccccccccccccccccc-ccccccccccccccccc-ccc-cccchhhHHHHHHHHHh----
Confidence                 2456789999999999988888888888888 78899999999999988 444 45678888888776655    


Q ss_pred             CCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434          516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ  593 (697)
Q Consensus       516 ~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~  593 (697)
                            +.+++.++++++....+...+..+|..++.++...+  +.+...|++++...+.      ...+...++..+..
T Consensus       125 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~  192 (280)
T PF13429_consen  125 ------DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLID  192 (280)
T ss_dssp             -------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCT
T ss_pred             ------HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHH
Confidence                  467788888887654433346789999998887766  5788999999875432      34556666666778


Q ss_pred             hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhh
Q 005434          594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSET  673 (697)
Q Consensus       594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (697)
                      .|+.++++.+++......|.+..+|..++.....+|      +.+.|..+|++++...|+++.+...|++.-...|..+.
T Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg------~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~  266 (280)
T PF13429_consen  193 MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG------RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE  266 (280)
T ss_dssp             TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred             CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc------cccccccccccccccccccccccccccccccccccccc
Confidence            899999999999998887788888888888888888      88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 005434          674 ATAVYWRARKTL  685 (697)
Q Consensus       674 a~~vy~ral~~~  685 (697)
                      |..|+.++.+.+
T Consensus       267 A~~~~~~~~~~l  278 (280)
T PF13429_consen  267 ALRLRRQALRLL  278 (280)
T ss_dssp             ------------
T ss_pred             cccccccccccc
Confidence            999999998765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.40  E-value=1.7e-08  Score=119.61  Aligned_cols=536  Identities=11%  Similarity=0.017  Sum_probs=324.3

Q ss_pred             HhhHHHHHHHhCCCCChHHH------------HHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHH
Q 005434           76 KQRRKFEYRLKRPSPLKQDY------------LAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARI  143 (697)
Q Consensus        76 ~kR~~fE~~l~r~~~~~~~~------------~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  143 (697)
                      +.=..||.-+...|.+....            ++|.++|.-+..|. .|.....   |.......-....-..-.--..+
T Consensus       126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~---~~~~vL~L~~~rlY~~l~dw~~A  201 (987)
T PRK09782        126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAAS---PEGKTLRTDLLQRAIYLKQWSQA  201 (987)
T ss_pred             hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCC---CCcHHHHHHHHHHHHHHhCHHHH
Confidence            33467777777777665433            46889988887776 4432210   00000000000000000012447


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434          144 LEIYRLAVMRFKGDIELWFKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (697)
Q Consensus       144 ~~iyeral~~~p~~~~lW~~y~~~~~~-~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~  222 (697)
                      ..+++++++..|.+.+.+..+.+.... .+...+..++...+   ..++.+|..++...+ ..|+.+.|..++...=...
T Consensus       202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~l---k~d~~l~~ala~~yi-~~G~~~~A~~~L~~~~~~~  277 (987)
T PRK09782        202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGI---FTDPQSRITYATALA-YRGEKARLQHYLIENKPLF  277 (987)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhc---ccCHHHHHHHHHHHH-HCCCHHHHHHHHHhCcccc
Confidence            789999999999999999888885554 23345666655433   378999999999997 7999999998888732222


Q ss_pred             ---CCCHHHHHHHHHHHHHH-----H----HHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC-
Q 005434          223 ---PTSEELWVEYLRMELTY-----L----NKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG-  289 (697)
Q Consensus       223 ---p~~~~lW~~y~~~E~~~-----~----~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-  289 (697)
                         |. +..|+--+.=+...     .    ..-..++.++....+-.      ...+.|.. ... +....  +.++.. 
T Consensus       278 ~~~~~-~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~-~~~~~--~~~~~~~  346 (987)
T PRK09782        278 TTDAQ-EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL------LKEGQYDA-AQK-LLATL--PANEMLE  346 (987)
T ss_pred             cCCCc-cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH------HhccHHHH-HHH-HhcCC--CcchHHH
Confidence               43 34444332111110     0    00001111111000000      00000000 000 00000  000000 


Q ss_pred             ---C---C------------------C-cchhh-hhhhhhhhhhhhhHHHHHHHHHHhcCCC---chHHHHHHHHHHHHc
Q 005434          290 ---S---Q------------------P-ENMES-QKSVDLFREQGLRVLQTIYSGAVEALPS---SFNLRQRFFEIVEAT  340 (697)
Q Consensus       290 ---~---~------------------~-~~~~~-~~~~~~~~~~~~~~a~~iy~~al~~~p~---~~~~~~~~~~~~~~f  340 (697)
                         .   .                  . ....+ +.....+.+++.+.|..+|+.+....++   +..+...+..++.+-
T Consensus       347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  426 (987)
T PRK09782        347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH  426 (987)
T ss_pred             HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence               0   0                  0 00111 1111222334568899999999875322   123555677777654


Q ss_pred             cccCcHHHH----------------------HHHHHHHHh---hCCC--ChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434          341 NLAQSDDMH----------------------DKILSDMQR---DFLV--DPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (697)
Q Consensus       341 e~~~~~~~~----------------------~~il~~~~~---~~p~--~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~  393 (697)
                      +.......+                      ...++.+..   ..|.  ++..|..++.....              +..
T Consensus       427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~--------------~~~  492 (987)
T PRK09782        427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD--------------TLP  492 (987)
T ss_pred             CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh--------------CCc
Confidence            321111111                      222333333   3455  67778888877753              456


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005434          394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL  473 (697)
Q Consensus       394 ~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~  473 (697)
                      +.|...|.+++...|+..  .   .+.......             ..+..+.|...|++++...|. ...|...+..+.
T Consensus       493 ~eAi~a~~~Al~~~Pd~~--~---~L~lA~al~-------------~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all  553 (987)
T PRK09782        493 GVALYAWLQAEQRQPDAW--Q---HRAVAYQAY-------------QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQ  553 (987)
T ss_pred             HHHHHHHHHHHHhCCchH--H---HHHHHHHHH-------------HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHH
Confidence            779999999999888742  2   111111000             135578899999998776444 455788889999


Q ss_pred             hcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Q 005434          474 QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFF  553 (697)
Q Consensus       474 ~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~  553 (697)
                      ..|++++|...+++++ ...|....+...........|          +.+.+...|++++...|.   ...|......+
T Consensus       554 ~~Gd~~eA~~~l~qAL-~l~P~~~~l~~~La~~l~~~G----------r~~eAl~~~~~AL~l~P~---~~a~~~LA~~l  619 (987)
T PRK09782        554 AAGNGAARDRWLQQAE-QRGLGDNALYWWLHAQRYIPG----------QPELALNDLTRSLNIAPS---ANAYVARATIY  619 (987)
T ss_pred             HCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence            9999999999999999 677877655543222221224          478899999999987773   45676665555


Q ss_pred             Hhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCC
Q 005434          554 MNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASV  631 (697)
Q Consensus       554 ~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~  631 (697)
                      ...+  +.+...|++++..-+.      .......+...+...|..++|..+|++++...|.+..++...+.....+|  
T Consensus       620 ~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG--  691 (987)
T PRK09782        620 RQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD--  691 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--
Confidence            4444  5678888888864221      23334444445667899999999999999999999998888888888888  


Q ss_pred             CCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          632 GDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       632 ~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                          +++.|...|++++...|.+..+=..+.+++...++..++.+-|.|+...-++++
T Consensus       692 ----d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        692 ----DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             ----CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence                899999999999999998888888999999999999999999999987665554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.38  E-value=2.5e-08  Score=111.67  Aligned_cols=465  Identities=12%  Similarity=0.040  Sum_probs=301.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~---~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~  215 (697)
                      +...+..+|..|....-.....|.--.-||...+.   +.+-..|...++.+|.+.-.-+.-|.+.+ ..+|+-.|-.+|
T Consensus       109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-nkkdY~~al~yy  187 (1018)
T KOG2002|consen  109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAY-NKKDYRGALKYY  187 (1018)
T ss_pred             HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHh-ccccHHHHHHHH
Confidence            56677789999988887777778777777776653   47888999999999999888888899997 789999999999


Q ss_pred             HHhhhhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCC
Q 005434          216 QNGLRVCPTSE-----ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (697)
Q Consensus       216 ~r~l~~~p~~~-----~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  290 (697)
                      +++|+.+|...     -+|.++.++-...... .+-.+++.+.+..         ......        +.         
T Consensus       188 k~al~inp~~~aD~rIgig~Cf~kl~~~~~a~-~a~~ralqLdp~~---------v~alv~--------L~---------  240 (1018)
T KOG2002|consen  188 KKALRINPACKADVRIGIGHCFWKLGMSEKAL-LAFERALQLDPTC---------VSALVA--------LG---------  240 (1018)
T ss_pred             HHHHhcCcccCCCccchhhhHHHhccchhhHH-HHHHHHHhcChhh---------HHHHHH--------HH---------
Confidence            99999999632     3688877765433211 1222233332211         000000        00         


Q ss_pred             CCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC---hhhH
Q 005434          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKYW  367 (697)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~---~~~w  367 (697)
                             .......+..++..+...+.+|....+.++.+...+...|-  .. .....+.++...++..--..   ...+
T Consensus       241 -------~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy--fK-~dy~~v~~la~~ai~~t~~~~~~aes~  310 (1018)
T KOG2002|consen  241 -------EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY--FK-KDYERVWHLAEHAIKNTENKSIKAESF  310 (1018)
T ss_pred             -------HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh--hc-ccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence                   00000111234567777777777777777665555444331  11 13455555555555543222   2225


Q ss_pred             HHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434          368 DWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL  447 (697)
Q Consensus       368 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  447 (697)
                      +.+|+-+-.             .|++++|-..|-++++..+..-+.. +..+-+-+               ...+.++.+
T Consensus       311 Y~~gRs~Ha-------------~Gd~ekA~~yY~~s~k~~~d~~~l~-~~GlgQm~---------------i~~~dle~s  361 (1018)
T KOG2002|consen  311 YQLGRSYHA-------------QGDFEKAFKYYMESLKADNDNFVLP-LVGLGQMY---------------IKRGDLEES  361 (1018)
T ss_pred             HHHHHHHHh-------------hccHHHHHHHHHHHHccCCCCcccc-ccchhHHH---------------HHhchHHHH
Confidence            556665543             4778888888888888777652222 11111111               134678999


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccch
Q 005434          448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLG----KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADI  523 (697)
Q Consensus       448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~----~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~  523 (697)
                      ...|++.+..+|.+.+.-.-.+.++...+    ..+.|..++.+++ ...|.+.+.|.....+++...           .
T Consensus       362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql~e~~d-----------~  429 (1018)
T KOG2002|consen  362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL-EQTPVDSEAWLELAQLLEQTD-----------P  429 (1018)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHhcC-----------h
Confidence            99999999999998776666666665554    4677888999999 788999999999999887654           3


Q ss_pred             HHHHHHHHHHHhhcC--hhhhHHHHHHH---HHHHHhhhHHHHHHHHHHHHhhhhCCCCCC--CCChHHHH--HHHHHHh
Q 005434          524 LSIFELLKCILTKVS--ALESESLWLMA---LKFFMNQKHYFDKLVEIALISVAKDGGGES--GFSLPSAI--INLVIQK  594 (697)
Q Consensus       524 ~~~~~~f~~al~~~p--~~~~~~lW~~y---~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~~l~~~y--l~~~~~~  594 (697)
                      -.....|.+|+..+-  .....+-|+--   ..|....-+.+...|..|...+.+..+.+.  ...+-..|  ...+...
T Consensus       430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l  509 (1018)
T KOG2002|consen  430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL  509 (1018)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence            344677888875321  11122334422   222222226778888888877543222222  23333344  2334556


Q ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhH
Q 005434          595 DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETA  674 (697)
Q Consensus       595 ~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a  674 (697)
                      ++.+.|-++|...++.+|.=+.-++...-+....+      +...|-.++..++..+..+|+.|.-+..+........-+
T Consensus       510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~------~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN------NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc------CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence            89999999999999998866655555544444444      778999999999998889999999999999888777777


Q ss_pred             HHHHHHHHhhcCCc
Q 005434          675 TAVYWRARKTLKDS  688 (697)
Q Consensus       675 ~~vy~ral~~~~~~  688 (697)
                      ..=|.+.++.....
T Consensus       584 ~k~f~~i~~~~~~~  597 (1018)
T KOG2002|consen  584 KKKFETILKKTSTK  597 (1018)
T ss_pred             ccHHHHHHhhhccC
Confidence            77777777665433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.38  E-value=4.1e-08  Score=117.35  Aligned_cols=90  Identities=12%  Similarity=-0.062  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~--~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ......+.+++...++....=..|..+++ .| ...+.++|+.+.....-  +...+-...... ...|.+..|..+|..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~-~~~g~~~eAl~lf~~  431 (1060)
T PLN03218        354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-KKQRAVKEAFRFAKL  431 (1060)
T ss_pred             hhhHHHhccccCCCCCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence            34455666666666654444444444443 34 45677788777665432  222233334444 256777777777765


Q ss_pred             hhhhCCCCHHHHHHHHHH
Q 005434          218 GLRVCPTSEELWVEYLRM  235 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~  235 (697)
                      ...  |+ ...|...+..
T Consensus       432 M~~--pd-~~Tyn~LL~a  446 (1060)
T PLN03218        432 IRN--PT-LSTFNMLMSV  446 (1060)
T ss_pred             cCC--CC-HHHHHHHHHH
Confidence            543  43 4455544433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.35  E-value=8.1e-08  Score=114.01  Aligned_cols=204  Identities=16%  Similarity=0.106  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      ..+...|++|+...|++..+....+.+....| ...+...+++++..+|.+..+....+..     ++...|-.++++.+
T Consensus        61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-----~~~~kA~~~ye~l~  135 (987)
T PRK09782         61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-----PVEVKSVTTVEELL  135 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-----ccChhHHHHHHHHH
Confidence            37889999999999999999999999988887 5789999999999999988887776443     67788999999999


Q ss_pred             hhCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434          220 RVCPTSEELWVEYLRME-----LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E-----~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  294 (697)
                      ...|++.++-...+..|     +.+.....+.. .+.  ......++                          .     +
T Consensus       136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~-AL~--lr~~~~~~--------------------------~-----~  181 (987)
T PRK09782        136 AQQKACDAVPTLRCRSEVGQNALRLAQLPVARA-QLN--DATFAASP--------------------------E-----G  181 (987)
T ss_pred             HhCCCChhHHHHHHHHhhccchhhhhhHHHHHH-HHH--HhhhCCCC--------------------------C-----c
Confidence            99999776554444432     12222111221 111  10000000                          0     0


Q ss_pred             hhhhhh-hhh-hhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHH
Q 005434          295 MESQKS-VDL-FREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (697)
Q Consensus       295 ~~~~~~-~~~-~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~  372 (697)
                      ..+... ..+ ...++.+.|..++...++..|.+.+.+..+-+.+..- .. . +.+..++..   ...+++.+|..++.
T Consensus       182 ~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~-l~-~-~~a~al~~~---~lk~d~~l~~ala~  255 (987)
T PRK09782        182 KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG-QL-D-DRLLALQSQ---GIFTDPQSRITYAT  255 (987)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hC-H-HHHHHHhch---hcccCHHHHHHHHH
Confidence            000000 111 1123457799999999999888777676666655431 11 1 334444332   22367899999999


Q ss_pred             hhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (697)
Q Consensus       373 ~~l~~~~~~~~~~~~~~~~~~~~a~~vye~  402 (697)
                      .++.             .+..+.|..+.++
T Consensus       256 ~yi~-------------~G~~~~A~~~L~~  272 (987)
T PRK09782        256 ALAY-------------RGEKARLQHYLIE  272 (987)
T ss_pred             HHHH-------------CCCHHHHHHHHHh
Confidence            9886             3566666655544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.31  E-value=1.8e-07  Score=111.98  Aligned_cols=383  Identities=11%  Similarity=0.059  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRF--KGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (697)
Q Consensus       140 ~~r~~~iyeral~~~--p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~  216 (697)
                      ...+..+|+.+....  |.+.-.+..++..|.+.+. ..+..+|..+..  | +...|-..+..+. ..|+++.|+.+|+
T Consensus       386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~-k~g~~e~A~~lf~  461 (1060)
T PLN03218        386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCA-SSQDIDGALRVLR  461 (1060)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHH-hCcCHHHHHHHHH
Confidence            456677888877654  3344455567777777663 466677766653  4 4677888777775 7899999999999


Q ss_pred             HhhhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434          217 NGLRVCPT-SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (697)
Q Consensus       217 r~l~~~p~-~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (697)
                      +..+.... +..+|...+..-...+.                                                      
T Consensus       462 ~M~~~Gl~pD~~tynsLI~~y~k~G~------------------------------------------------------  487 (1060)
T PLN03218        462 LVQEAGLKADCKLYTTLISTCAKSGK------------------------------------------------------  487 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCcC------------------------------------------------------
Confidence            98876532 35666666554433222                                                      


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhC-CCChhhHHHHHHh
Q 005434          296 ESQKSVDLFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF-LVDPKYWDWLARL  373 (697)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~-p~~~~~w~~~a~~  373 (697)
                                   .+.|..+|+...+.- ..+...|..++..|.+.+   ..+.+..+++.|.... .-+..+|..+...
T Consensus       488 -------------vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G---~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a  551 (1060)
T PLN03218        488 -------------VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVKPDRVVFNALISA  551 (1060)
T ss_pred             -------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence                         234455555554431 112345555666555543   2345556666665432 1124455555555


Q ss_pred             hcccCCCCCCCCcCccchHHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHH
Q 005434          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN----VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT  449 (697)
Q Consensus       374 ~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~----~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~  449 (697)
                      +..             .+.++.|..+|++....    .|+...|...+..+-+                  .+.+++|..
T Consensus       552 ~~k-------------~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k------------------~G~ldeA~e  600 (1060)
T PLN03218        552 CGQ-------------SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN------------------AGQVDRAKE  600 (1060)
T ss_pred             HHH-------------CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH------------------CCCHHHHHH
Confidence            543             25566666666666532    2333344444433322                  234566666


Q ss_pred             HHHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434          450 VYEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (697)
Q Consensus       450 ~ye~al~~~~-~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~  528 (697)
                      +|+.....+. .+...|...+..+.+.|++++|.+++++.....+..+...|...|+...+.+          +++.+.+
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G----------~~eeA~~  670 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG----------DLDKAFE  670 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------CHHHHHH
Confidence            6666666542 3455666666666666777777766666653333334556665555555444          3566666


Q ss_pred             HHHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHH
Q 005434          529 LLKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYK  605 (697)
Q Consensus       529 ~f~~al~~-~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~  605 (697)
                      +|..+.+. +++.  ...|...+..+...+  +.+..+|+.+...     +..+....|...+.-+.+.|.+++|.++|+
T Consensus       671 l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g~~PdvvtyN~LI~gy~k~G~~eeAlelf~  743 (1060)
T PLN03218        671 ILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSI-----KLRPTVSTMNALITALCEGNQLPKALEVLS  743 (1060)
T ss_pred             HHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            66666543 1221  234444444443333  4555566654321     011122234445555556666777777777


Q ss_pred             HHHhC-CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434          606 RFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (697)
Q Consensus       606 ~~i~~-~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~  650 (697)
                      .+... ..|+...|...+..-.+.+      +++.|..+|+.+...
T Consensus       744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G------~le~A~~l~~~M~k~  783 (1060)
T PLN03218        744 EMKRLGLCPNTITYSILLVASERKD------DADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHc
Confidence            66543 2344444444444444444      666677777666654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.30  E-value=5.8e-08  Score=113.79  Aligned_cols=439  Identities=12%  Similarity=0.054  Sum_probs=296.7

Q ss_pred             HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 005434          140 VARILEIYRLAVMR--FKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARAL  214 (697)
Q Consensus       140 ~~r~~~iyeral~~--~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~  214 (697)
                      ...+..+|+.+...  ++-+...+...+..|.+.+. ..+..++..+...  .| ++..+-..+.... ..|+++.|+.+
T Consensus       103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~-k~g~~~~A~~l  180 (697)
T PLN03081        103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHV-KCGMLIDARRL  180 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHh-cCCCHHHHHHH
Confidence            45677888888764  34467788888888887763 5678888888774  34 4777888888775 78999999999


Q ss_pred             HHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH---hccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCC
Q 005434          215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVA---LGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQ  291 (697)
Q Consensus       215 ~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~---l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  291 (697)
                      |++...  |+ ...|...+.-....+....+...+   .....                               .++.  
T Consensus       181 f~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~-------------------------------~p~~--  224 (697)
T PLN03081        181 FDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGS-------------------------------DAEP--  224 (697)
T ss_pred             HhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-------------------------------CCCh--
Confidence            999864  43 456777766555444332222211   11000                               0000  


Q ss_pred             Ccchhhhhhhh-hhhhhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHH
Q 005434          292 PENMESQKSVD-LFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (697)
Q Consensus       292 ~~~~~~~~~~~-~~~~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~  369 (697)
                         ..+...+. .........++.++..+++.- ..+...+..+++.|.+.+   ..+.+..+++.+..   .+...|..
T Consensus       225 ---~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~---~~~vt~n~  295 (697)
T PLN03081        225 ---RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG---DIEDARCVFDGMPE---KTTVAWNS  295 (697)
T ss_pred             ---hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC---CHHHHHHHHHhCCC---CChhHHHH
Confidence               00000000 001112355666766666542 234456777888888765   34678888887643   45678988


Q ss_pred             HHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN--VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL  447 (697)
Q Consensus       370 ~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~--~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  447 (697)
                      +..-+..             .++.++|..+|++..+.  .|+...+...+..+-.                  .+.++.+
T Consensus       296 li~~y~~-------------~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~------------------~g~~~~a  344 (697)
T PLN03081        296 MLAGYAL-------------HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR------------------LALLEHA  344 (697)
T ss_pred             HHHHHHh-------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------------------ccchHHH
Confidence            8888865             47899999999988664  3444344433333322                  2457889


Q ss_pred             HHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHH
Q 005434          448 LTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSI  526 (697)
Q Consensus       448 r~~ye~al~~~-~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~  526 (697)
                      ..+++.++..+ +.+..++...++++.+.|++++|.+++++.. .  | +...|..-|.-..+.|          +.+++
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~--~-d~~t~n~lI~~y~~~G----------~~~~A  410 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R--K-NLISWNALIAGYGNHG----------RGTKA  410 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C--C-CeeeHHHHHHHHHHcC----------CHHHH
Confidence            99999998886 3456788889999999999999999999876 3  3 4678998888777776          37889


Q ss_pred             HHHHHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHH
Q 005434          527 FELLKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM  603 (697)
Q Consensus       527 ~~~f~~al~~-~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~i  603 (697)
                      .++|++.... +.|.  ...+...+.-+...+  +.+..+|+.+....    +..+....+...++.+-+.|.+++|.++
T Consensus       411 ~~lf~~M~~~g~~Pd--~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p~~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        411 VEMFERMIAEGVAPN--HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKPRAMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             HHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence            9999998763 3332  223443443333333  56778888876421    1112334456678888899999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434          604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARK  683 (697)
Q Consensus       604 y~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~  683 (697)
                      +++.-  ..|+...|...+.--...+      +++.++.++++++...|.+...+...++.-...|+.+.|.++++...+
T Consensus       485 ~~~~~--~~p~~~~~~~Ll~a~~~~g------~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        485 IRRAP--FKPTVNMWAALLTACRIHK------NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHCC--CCCCHHHHHHHHHHHHHcC------CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            98752  2345667887777766677      889999999999988887777778888888889999999999987654


Q ss_pred             h
Q 005434          684 T  684 (697)
Q Consensus       684 ~  684 (697)
                      .
T Consensus       557 ~  557 (697)
T PLN03081        557 K  557 (697)
T ss_pred             c
Confidence            3

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.30  E-value=5e-11  Score=122.66  Aligned_cols=133  Identities=17%  Similarity=0.202  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 005434          412 IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL-GKLDEARKLAAKLCS  490 (697)
Q Consensus       412 lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~-~~~~~A~~l~~~al~  490 (697)
                      .|..|.+|+...                  +.++.+|.+|++|...+..+..+|..+|.+|..+ ++.+.|++|+++++ 
T Consensus         3 v~i~~m~~~~r~------------------~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl-   63 (280)
T PF05843_consen    3 VWIQYMRFMRRT------------------EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL-   63 (280)
T ss_dssp             HHHHHHHHHHHH------------------HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHh------------------CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence            588888887752                  4489999999999977777899999999999995 66677999999999 


Q ss_pred             ccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhhh--HHHHHHHHHH
Q 005434          491 GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SESLWLMALKFFMNQK--HYFDKLVEIA  567 (697)
Q Consensus       491 ~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~~lW~~y~~~~~~~~--~~~~~l~~~a  567 (697)
                      ..+|.+.++|..|+++++..+          +.+.+|.+|++++..++... +..||..|++|+...|  +.+.++++++
T Consensus        64 k~f~~~~~~~~~Y~~~l~~~~----------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   64 KKFPSDPDFWLEYLDFLIKLN----------DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            799999999999999999876          47999999999999998877 8899999999988877  4677888888


Q ss_pred             HHhhhh
Q 005434          568 LISVAK  573 (697)
Q Consensus       568 ~~~~~~  573 (697)
                      ...++.
T Consensus       134 ~~~~~~  139 (280)
T PF05843_consen  134 EELFPE  139 (280)
T ss_dssp             HHHTTT
T ss_pred             HHHhhh
Confidence            776643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.30  E-value=1.5e-11  Score=127.37  Aligned_cols=262  Identities=15%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHH
Q 005434          159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (697)
Q Consensus       159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~  235 (697)
                      ...+.++......| +.++..++.+.+...  |+++.+|..++.... ..++.+.|+..+++.+...|.++.....++.+
T Consensus         9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l   87 (280)
T PF13429_consen    9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQL   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            44456677766666 578888887766554  788899999998885 78899999999999998887766665555544


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHH
Q 005434          236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI  315 (697)
Q Consensus       236 E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i  315 (697)
                       ...++                                                                   .+.|..+
T Consensus        88 -~~~~~-------------------------------------------------------------------~~~A~~~   99 (280)
T PF13429_consen   88 -LQDGD-------------------------------------------------------------------PEEALKL   99 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ccccc-------------------------------------------------------------------ccccccc
Confidence             22111                                                                   1223333


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHh--hCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434          316 YSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR--DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (697)
Q Consensus       316 y~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~--~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~  393 (697)
                      +..+.+..++ ..++..++.++...+   ....+..+++.+..  ..|.++..|..+|..+..             .|+.
T Consensus       100 ~~~~~~~~~~-~~~l~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-------------~G~~  162 (280)
T PF13429_consen  100 AEKAYERDGD-PRYLLSALQLYYRLG---DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-------------LGDP  162 (280)
T ss_dssp             -------------------H-HHHTT----HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-------------CCHH
T ss_pred             cccccccccc-cchhhHHHHHHHHHh---HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------------cCCH
Confidence            3333333222 344445554444332   34566667777554  346778899999999875             4889


Q ss_pred             HHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005434          394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY  472 (697)
Q Consensus       394 ~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~  472 (697)
                      ++|...|++||+..|.+. ++..++.+...                  .+..+.++.+++......|.++.+|..++..+
T Consensus       163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~  224 (280)
T PF13429_consen  163 DKALRDYRKALELDPDDPDARNALAWLLID------------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAY  224 (280)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence            999999999999999755 66666554332                  23455677777776666678888999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434          473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (697)
Q Consensus       473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~  535 (697)
                      ...|++++|...+++++ ...|+++.+...+.+.....|.          .+++.+++.+++.
T Consensus       225 ~~lg~~~~Al~~~~~~~-~~~p~d~~~~~~~a~~l~~~g~----------~~~A~~~~~~~~~  276 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKAL-KLNPDDPLWLLAYADALEQAGR----------KDEALRLRRQALR  276 (280)
T ss_dssp             HHHT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHT---------------------------
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccc----------ccccccccccccc
Confidence            99999999999999999 7899999999999999888774          5677777777664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.29  E-value=1.1e-08  Score=111.35  Aligned_cols=257  Identities=9%  Similarity=-0.034  Sum_probs=186.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV----PGVWIYAAAWEFDHNLNVTAARAL  214 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~----~~lW~~~a~~e~~~~~~~~~aR~~  214 (697)
                      ...+...|++++...|++...|...+......| ...+..++++++...+..    ...|...+.... ..|+++.|..+
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~  129 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEEL  129 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHH
Confidence            455889999999999999999999998887777 568889999988753332    246777777775 78999999999


Q ss_pred             HHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434          215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (697)
Q Consensus       215 ~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  294 (697)
                      |++++...|.+...+...+.+....+                                                      
T Consensus       130 ~~~~l~~~~~~~~~~~~la~~~~~~g------------------------------------------------------  155 (389)
T PRK11788        130 FLQLVDEGDFAEGALQQLLEIYQQEK------------------------------------------------------  155 (389)
T ss_pred             HHHHHcCCcchHHHHHHHHHHHHHhc------------------------------------------------------
Confidence            99999988876666655554432211                                                      


Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHH
Q 005434          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-----LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (697)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~-----~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~  369 (697)
                                   +++.|...|+.+++..|.+..     ++..+...+...   +..+.+...++++++..|+....+..
T Consensus       156 -------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~  219 (389)
T PRK11788        156 -------------DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR---GDLDAARALLKKALAADPQCVRASIL  219 (389)
T ss_pred             -------------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence                         234556666666665444321     111222222111   24577888899999999999888999


Q ss_pred             HHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL  447 (697)
Q Consensus       370 ~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  447 (697)
                      ++..+..             .+++++|...|+++++..|...  .+...+.....                  .+..+.+
T Consensus       220 la~~~~~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~------------------~g~~~~A  268 (389)
T PRK11788        220 LGDLALA-------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA------------------LGDEAEG  268 (389)
T ss_pred             HHHHHHH-------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH------------------cCCHHHH
Confidence            9988865             4789999999999998766532  22222222221                  2457889


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434          448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (697)
                      ...+++++..+|..+. ....+.++...|++++|..++++++ ...|++..+.
T Consensus       269 ~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l-~~~P~~~~~~  319 (389)
T PRK11788        269 LEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQL-RRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHH-HhCcCHHHHH
Confidence            9999999998887654 4888999999999999999999999 7889876544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=3.4e-08  Score=102.85  Aligned_cols=220  Identities=9%  Similarity=0.029  Sum_probs=172.1

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      ++.-.+...|+.+|..+|....+++..+.++.+.++.++-.+.+.+|. ...|.+.+++..+.++..-.+          
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~-~ldp~n~dvYyHRgQm~flL~----------  408 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE-DLDPENPDVYYHRGQMRFLLQ----------  408 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH-hcCCCCCchhHhHHHHHHHHH----------
Confidence            445567888999999999999999999999999999999899999999 789999999998888776655          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR  601 (697)
                      +++.+..-|++|+..-|......+=+.++.|=...-+.....|+.+...++.      ++.+...|.+.+...++++.|-
T Consensus       409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhhHHhHHHHH
Confidence            3778888899998766644333333334433222225677888888876643      5778888899999999999999


Q ss_pred             HHHHHHHhCCCC------CHH--HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhh
Q 005434          602 EMYKRFLALPRP------GLV--LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSET  673 (697)
Q Consensus       602 ~iy~~~i~~~p~------~~~--~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (697)
                      +-|..||.+-|.      +.-  +....+.+-+. +      ++++|-.|..+|++..|.+........+||...|++++
T Consensus       483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e  555 (606)
T KOG0547|consen  483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E------DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE  555 (606)
T ss_pred             HHHHHHHhhccccccccccchhhhhhhHhhhchh-h------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence            999999998776      322  33333434333 2      89999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 005434          674 ATAVYWRARKTL  685 (697)
Q Consensus       674 a~~vy~ral~~~  685 (697)
                      |..+|+.+..--
T Consensus       556 AielFEksa~lA  567 (606)
T KOG0547|consen  556 AIELFEKSAQLA  567 (606)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.21  E-value=2.4e-08  Score=108.58  Aligned_cols=286  Identities=12%  Similarity=0.023  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHH
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDM  423 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~  423 (697)
                      .+.+...+.++++..|++...|..++..+..             .++++.|..+++.++...+...  ....+...-...
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~  117 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRR-------------RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY  117 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------------cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            3568888889999999999899999988865             4789999999999987533221  111122221111


Q ss_pred             hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH-----H
Q 005434          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-----Q  498 (697)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----~  498 (697)
                      .               ..+..+.|..+|++++..+|.+...+...+.++...|++++|.+++++++ ...|.+.     .
T Consensus       118 ~---------------~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~  181 (389)
T PRK11788        118 L---------------KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAH  181 (389)
T ss_pred             H---------------HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHH
Confidence            1               13568899999999999888888899999999999999999999999998 5555532     2


Q ss_pred             HHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCC
Q 005434          499 LWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGG  576 (697)
Q Consensus       499 lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~  576 (697)
                      .|..........+          +.+.+...|.++++..|..  ...|...+..+...+  +.+..+|+++....+..  
T Consensus       182 ~~~~la~~~~~~~----------~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--  247 (389)
T PRK11788        182 FYCELAQQALARG----------DLDAARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEY--  247 (389)
T ss_pred             HHHHHHHHHHhCC----------CHHHHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh--
Confidence            3333333333333          4788989999999876542  345555555554444  56778888877531110  


Q ss_pred             CCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCch
Q 005434          577 GESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS  656 (697)
Q Consensus       577 ~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~  656 (697)
                         ....+...+..+...|++++|...+++++...|.. ..+...+.+....+      +.+.|..+|+.++...|++..
T Consensus       248 ---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g------~~~~A~~~l~~~l~~~P~~~~  317 (389)
T PRK11788        248 ---LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQE------GPEAAQALLREQLRRHPSLRG  317 (389)
T ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCcCHHH
Confidence               11122233444567899999999999999987755 34466777777777      899999999999999886665


Q ss_pred             HHHHHHHHH--HhcCChhhHHHHHHHHHhh
Q 005434          657 LWRDYYSTE--TKLGTSETATAVYWRARKT  684 (697)
Q Consensus       657 lW~~y~~fE--~~~G~~~~a~~vy~ral~~  684 (697)
                      +...+..+.  ..+|+...+..++++.++.
T Consensus       318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            443333332  2367888888888888764

>PLN03077 Protein ECB2; Provisional

Probab=99.10  E-value=1.2e-06  Score=105.38  Aligned_cols=442  Identities=9%  Similarity=-0.004  Sum_probs=295.5

Q ss_pred             hHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHH
Q 005434          138 SGVARILEIYRLAVMR--FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH-PKVPGVWIYAAAWEFDHNLNVTAARA  213 (697)
Q Consensus       138 ~~~~r~~~iyeral~~--~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~-p~~~~lW~~~a~~e~~~~~~~~~aR~  213 (697)
                      .....+..+|+++...  .| |.-.+...+.-|...+ ...+..++..+.... +.+..+|-..+.... ..|+++.|+.
T Consensus       267 g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~  344 (857)
T PLN03077        267 GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEK  344 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHH
Confidence            3467788999998765  35 5556677777777766 457888998887753 335778888888875 7899999999


Q ss_pred             HHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCc
Q 005434          214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (697)
Q Consensus       214 ~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  293 (697)
                      +|++...  | +...|...+.-..+.+....+.. ++..-.                +      ..+     .|+.    
T Consensus       345 vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~-lf~~M~----------------~------~g~-----~Pd~----  389 (857)
T PLN03077        345 VFSRMET--K-DAVSWTAMISGYEKNGLPDKALE-TYALME----------------Q------DNV-----SPDE----  389 (857)
T ss_pred             HHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHH-HHHHHH----------------H------hCC-----CCCc----
Confidence            9998653  3 34678877776655443333222 111000                0      000     0110    


Q ss_pred             chhhhhhh-hhhhhhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH
Q 005434          294 NMESQKSV-DLFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA  371 (697)
Q Consensus       294 ~~~~~~~~-~~~~~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a  371 (697)
                       ..+...+ .....+..+.+..+++.+++.- ..+...+..++++|.+.+   ..+.+..+++++.+   .+...|..+.
T Consensus       390 -~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~---~d~vs~~~mi  462 (857)
T PLN03077        390 -ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK---CIDKALEVFHNIPE---KDVISWTSII  462 (857)
T ss_pred             -eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC---CHHHHHHHHHhCCC---CCeeeHHHHH
Confidence             0000001 1112235678899999988763 334567788888888775   35778888888754   2456788887


Q ss_pred             HhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHH
Q 005434          372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (697)
Q Consensus       372 ~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~  450 (697)
                      .-+..             .+..+.|..+|++.+..++. ...+...+..+-.                  .+.++.++.+
T Consensus       463 ~~~~~-------------~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~------------------~g~l~~~~~i  511 (857)
T PLN03077        463 AGLRL-------------NNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR------------------IGALMCGKEI  511 (857)
T ss_pred             HHHHH-------------CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh------------------hchHHHhHHH
Confidence            77654             36788999999999876543 3244443333322                  2557888999


Q ss_pred             HHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHH
Q 005434          451 YEKAEAMGCL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL  529 (697)
Q Consensus       451 ye~al~~~~~-~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~  529 (697)
                      +..++..+.. +.-+....++++.+.|++++|..++...     +.+...|...|.-....|.          .+++.++
T Consensus       512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~----------~~~A~~l  576 (857)
T PLN03077        512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK----------GSMAVEL  576 (857)
T ss_pred             HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC----------HHHHHHH
Confidence            9988887443 4455667889999999999999998764     5567899999988877774          7889999


Q ss_pred             HHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHH
Q 005434          530 LKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR  606 (697)
Q Consensus       530 f~~al~~-~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~  606 (697)
                      |++.... +.|..  ..+...+.-+...+  +.+..+|+.+......    .+....+...++.+.+.|.+++|.+++++
T Consensus       577 f~~M~~~g~~Pd~--~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi----~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        577 FNRMVESGVNPDE--VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI----TPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHcCCCCCc--ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9998763 33322  12222233233223  5677788887632211    11334456677888899999999999998


Q ss_pred             HHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434          607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARK  683 (697)
Q Consensus       607 ~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~  683 (697)
                      .-  ..|+...|...+.--...+      +++.++...+++++..|.++..+......-...|+.+.|.++......
T Consensus       651 m~--~~pd~~~~~aLl~ac~~~~------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        651 MP--ITPDPAVWGALLNACRIHR------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             CC--CCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            62  2345667777665544455      788899999999999998888888888888889999999998776644

>TIGR00540 hemY_coli hemY protein

Probab=99.10  E-value=1.8e-07  Score=102.19  Aligned_cols=281  Identities=14%  Similarity=0.008  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~-~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ...+.....++....|+..-...--++.....| ...+...|.++++..|.+. .+-..++...+ ..|+.+.|+..+++
T Consensus       100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~~l~~  178 (409)
T TIGR00540       100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARHGVDK  178 (409)
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            345566678888888877666666666666656 4688999999999999875 57777888887 78999999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      .++..|+++.++..+..+.+..++...+                                                    
T Consensus       179 l~~~~P~~~~~l~ll~~~~~~~~d~~~a----------------------------------------------------  206 (409)
T TIGR00540       179 LLEMAPRHKEVLKLAEEAYIRSGAWQAL----------------------------------------------------  206 (409)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhHHHH----------------------------------------------------
Confidence            9999999988888877776655443322                                                    


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhc-CCCchH-------HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCC----CChh
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEA-LPSSFN-------LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL----VDPK  365 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~-~p~~~~-------~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p----~~~~  365 (697)
                                     ...++...+. ..+..+       .+..+++.-   .    .+.....+..+....|    +++.
T Consensus       207 ---------------~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~---~----~~~~~~~L~~~~~~~p~~~~~~~~  264 (409)
T TIGR00540       207 ---------------DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA---M----ADEGIDGLLNWWKNQPRHRRHNIA  264 (409)
T ss_pred             ---------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H----HhcCHHHHHHHHHHCCHHHhCCHH
Confidence                           2222222222 111100       111111000   0    0111223444455555    6899


Q ss_pred             hHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HH-HHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434          366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IF-DLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (697)
Q Consensus       366 ~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw-~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (697)
                      ++..+|.....             .+..+.|..+++++++..|+.. .. ..+... . .+.               .++
T Consensus       265 l~~~~a~~l~~-------------~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~-~-~l~---------------~~~  314 (409)
T TIGR00540       265 LKIALAEHLID-------------CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI-P-RLK---------------PED  314 (409)
T ss_pred             HHHHHHHHHHH-------------CCChHHHHHHHHHHHhhCCCcccchhHHHHHh-h-hcC---------------CCC
Confidence            99999998875             4789999999999999988765 11 111111 0 010               133


Q ss_pred             HHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434          444 ISHLLTVYEKAEAMGCLTE--DIAHRYVTLYLQLGKLDEARKLAA--KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       444 ~~~ar~~ye~al~~~~~~~--~lw~~y~~l~~~~~~~~~A~~l~~--~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      .+.+...++++++..|.++  .+...++.++.+.|++++|++.++  +++ ...|++... .....+....|.       
T Consensus       315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~-~~La~ll~~~g~-------  385 (409)
T TIGR00540       315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDL-AMAADAFDQAGD-------  385 (409)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHH-HHHHHHHHHcCC-------
Confidence            5678999999999999999  888899999999999999999999  576 567877664 477777777764       


Q ss_pred             ccchHHHHHHHHHHHhhc
Q 005434          520 KADILSIFELLKCILTKV  537 (697)
Q Consensus       520 ~~~~~~~~~~f~~al~~~  537 (697)
                         .+.+.++|++++...
T Consensus       386 ---~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       386 ---KAEAAAMRQDSLGLM  400 (409)
T ss_pred             ---HHHHHHHHHHHHHHH
Confidence               578888999987643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.09  E-value=8.2e-06  Score=95.29  Aligned_cols=438  Identities=9%  Similarity=-0.055  Sum_probs=254.0

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      ..+...|+.+++..|.+......++.+....| ...+...+++++...|.....-...|.... ..|+.+.|..+|++++
T Consensus        51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~kaL  129 (822)
T PRK14574         51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSSL  129 (822)
T ss_pred             HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            47789999999999998533337777666666 568999999999333334444444466664 6799999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (697)
                      +..|+++.++...+......+                                                           
T Consensus       130 ~~dP~n~~~l~gLa~~y~~~~-----------------------------------------------------------  150 (822)
T PRK14574        130 KKDPTNPDLISGMIMTQADAG-----------------------------------------------------------  150 (822)
T ss_pred             hhCCCCHHHHHHHHHHHhhcC-----------------------------------------------------------
Confidence            999999888853322221111                                                           


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCC
Q 005434          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV  379 (697)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~  379 (697)
                              ..+.|...+++++...|..... .....++.  .. .....+...+++++..+|++......+.......  
T Consensus       151 --------q~~eAl~~l~~l~~~dp~~~~~-l~layL~~--~~-~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~--  216 (822)
T PRK14574        151 --------RGGVVLKQATELAERDPTVQNY-MTLSYLNR--AT-DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN--  216 (822)
T ss_pred             --------CHHHHHHHHHHhcccCcchHHH-HHHHHHHH--hc-chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Confidence                    1234555556655555543211 11111111  11 1122366667777777777766655554443221  


Q ss_pred             CCCCCCcCccchHHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHH-hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          380 SKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDM-IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       380 ~~~~~~~~~~~~~~~~a~~vye~al~~~~~~-~lw~~yi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 +....|.+...+--.-+... ..|..+-..-+.. .+.....+     ....-..++++..-|+..+..
T Consensus       217 -----------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~-----~~~r~~~~d~ala~~~~l~~~  280 (822)
T PRK14574        217 -----------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS-----ETERFDIADKALADYQNLLTR  280 (822)
T ss_pred             -----------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc-----chhhHHHHHHHHHHHHHHHhh
Confidence                       22222222222111111111 1232221111110 00000000     000123567888888888874


Q ss_pred             ---CCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHhh--ccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434          458 ---GCLTEDIA----HRYVTLYLQLGKLDEARKLAAKLCS--GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (697)
Q Consensus       458 ---~~~~~~lw----~~y~~l~~~~~~~~~A~~l~~~al~--~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~  528 (697)
                         .|.....|    .+.+-.+...|++.++.+.|+..-.  ...|.-+..|..-..+.  .+          ..+++..
T Consensus       281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~--~~----------~P~kA~~  348 (822)
T PRK14574        281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID--RR----------LPEKAAP  348 (822)
T ss_pred             ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh--cC----------CcHHHHH
Confidence               34332333    4566667778899999988877552  24577777776544433  22          2578888


Q ss_pred             HHHHHHhhcChh-----h---hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCC-----CCCCCCChHHHH----HHHH
Q 005434          529 LLKCILTKVSAL-----E---SESLWLMALKFFMNQKHYFDKLVEIALISVAKDG-----GGESGFSLPSAI----INLV  591 (697)
Q Consensus       529 ~f~~al~~~p~~-----~---~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~-----~~~~~~~l~~~y----l~~~  591 (697)
                      +|.+++..-++.     +   ...|.-.|++  ..+-+.+..+.+......+...     +......=|..+    +..+
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            999987643210     1   1233333322  1122556666666654222100     000011112222    2334


Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS  671 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~  671 (697)
                      .-.|++.+|-++++..+..-|.+..+.+.+++++...+      .+.+|..+++.+....|.+..+-...+.--...|+.
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg------~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~  500 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARD------LPRKAEQELKAVESLAPRSLILERAQAETAMALQEW  500 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence            45799999999999999999999999999999999998      889999999998888776654444444444446899


Q ss_pred             hhHHHHHHHHHhhcCCc
Q 005434          672 ETATAVYWRARKTLKDS  688 (697)
Q Consensus       672 ~~a~~vy~ral~~~~~~  688 (697)
                      ..|..+....+...|+.
T Consensus       501 ~~A~~~~~~l~~~~Pe~  517 (822)
T PRK14574        501 HQMELLTDDVISRSPED  517 (822)
T ss_pred             HHHHHHHHHHHhhCCCc
Confidence            99988888777777654

>PLN03077 Protein ECB2; Provisional

Probab=99.08  E-value=3e-06  Score=101.91  Aligned_cols=215  Identities=11%  Similarity=0.074  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchH
Q 005434          445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL  524 (697)
Q Consensus       445 ~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~  524 (697)
                      +.|..+|++.+...+.+...+...+.-..+.|+.+.+.++...+++...+.+..+....|++..+.|          +++
T Consensus       472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G----------~~~  541 (857)
T PLN03077        472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG----------RMN  541 (857)
T ss_pred             HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC----------CHH
Confidence            3444444444433222223333333333344444444444444443233333334444455555544          367


Q ss_pred             HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHH
Q 005434          525 SIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQARE  602 (697)
Q Consensus       525 ~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~  602 (697)
                      .+.++|...    ++  ....|...+.-+...+  +.+..+|+++...     +..+....+...+.-..+.|.+++|.+
T Consensus       542 ~A~~~f~~~----~~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~~T~~~ll~a~~~~g~v~ea~~  610 (857)
T PLN03077        542 YAWNQFNSH----EK--DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDEVTFISLLCACSRSGMVTQGLE  610 (857)
T ss_pred             HHHHHHHhc----CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcccHHHHHHHHhhcChHHHHHH
Confidence            777777765    22  2456887777665555  6788888887642     111122234444555567799999999


Q ss_pred             HHHHHHhC--CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHH
Q 005434          603 MYKRFLAL--PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWR  680 (697)
Q Consensus       603 iy~~~i~~--~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~r  680 (697)
                      +|+.+...  ..|+...|..++++--..|      .++.|.++++.+-  ...++.+|...+.-=..+|+.+.+..+.++
T Consensus       611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G------~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~  682 (857)
T PLN03077        611 YFHSMEEKYSITPNLKHYACVVDLLGRAG------KLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQH  682 (857)
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhCC------CHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99999843  3566778899999888888      8999999998752  124568898888877779999999888888


Q ss_pred             HHhhcCCc
Q 005434          681 ARKTLKDS  688 (697)
Q Consensus       681 al~~~~~~  688 (697)
                      +++.-|+.
T Consensus       683 l~~l~p~~  690 (857)
T PLN03077        683 IFELDPNS  690 (857)
T ss_pred             HHhhCCCC
Confidence            88765554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.07  E-value=3.7e-06  Score=98.12  Aligned_cols=123  Identities=13%  Similarity=-0.032  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCCChHHHH-HHH-HHHhCCHHHHHHHHHHHHhCCCC------------CHH---HHHH
Q 005434          558 HYFDKLVEIALISVAKDGGGESGFSLPSAI-INL-VIQKDGIQQAREMYKRFLALPRP------------GLV---LYQN  620 (697)
Q Consensus       558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y-l~~-~~~~~~~~~AR~iy~~~i~~~p~------------~~~---~~~~  620 (697)
                      +.+..+|.+++..-.+..  .....+...- +-| +...+.+++|+.+.++....+|.            +..   ....
T Consensus       344 ~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l  421 (822)
T PRK14574        344 EKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL  421 (822)
T ss_pred             HHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence            677788887765321100  0011221000 111 23578899999999999886552            111   2222


Q ss_pred             HHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          621 CIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       621 ~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      .+..-.-.+      +...|-++++..+...|.++.+++.+++.+...|.+.+|..+++++...-|+.
T Consensus       422 ~a~~~~~~g------dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~  483 (822)
T PRK14574        422 LVQSLVALN------DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS  483 (822)
T ss_pred             HHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence            233223345      88999999999999999999999999999999999999999997776665543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.04  E-value=1.1e-06  Score=103.09  Aligned_cols=424  Identities=10%  Similarity=0.040  Sum_probs=285.2

Q ss_pred             HHHHHHHHHHHhc-CchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CCCHHHHHHHHH
Q 005434          160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHP--KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC--PTSEELWVEYLR  234 (697)
Q Consensus       160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~p--~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~--p~~~~lW~~y~~  234 (697)
                      .|..-+.-+.+.| ...+..+|+.+....|  -++..+-..+.-.. ..++++.|+.++....+.-  | +..++...+.
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~-~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~  166 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLL  166 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence            5666666555555 4678899998876543  24567777777774 7899999999998887643  4 3577777777


Q ss_pred             HHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhh-hhhhhhhhhHHH
Q 005434          235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV-DLFREQGLRVLQ  313 (697)
Q Consensus       235 ~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  313 (697)
                      +..+.+....+++.+ ..-..                               ++.     ..+...+ .....+..+.|.
T Consensus       167 ~y~k~g~~~~A~~lf-~~m~~-------------------------------~~~-----~t~n~li~~~~~~g~~~~A~  209 (697)
T PLN03081        167 MHVKCGMLIDARRLF-DEMPE-------------------------------RNL-----ASWGTIIGGLVDAGNYREAF  209 (697)
T ss_pred             HHhcCCCHHHHHHHH-hcCCC-------------------------------CCe-----eeHHHHHHHHHHCcCHHHHH
Confidence            766655444444422 21100                               000     0011111 112233567899


Q ss_pred             HHHHHHHhcC--CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhh-CCCChhhHHHHHHhhcccCCCCCCCCcCccc
Q 005434          314 TIYSGAVEAL--PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD-FLVDPKYWDWLARLKMTDSVSKDGTSEDIVP  390 (697)
Q Consensus       314 ~iy~~al~~~--p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~-~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~  390 (697)
                      .+|+..++.-  |+. ..+..++..+...+   ....+..+...+.+. +..+..++..+...+..             .
T Consensus       210 ~lf~~M~~~g~~p~~-~t~~~ll~a~~~~~---~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k-------------~  272 (697)
T PLN03081        210 ALFREMWEDGSDAEP-RTFVVMLRASAGLG---SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK-------------C  272 (697)
T ss_pred             HHHHHHHHhCCCCCh-hhHHHHHHHHhcCC---cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH-------------C
Confidence            9999887653  332 23344444444332   234556666655554 33345567777777754             4


Q ss_pred             hHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHH
Q 005434          391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL-TEDIAHRYV  469 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~-~~~lw~~y~  469 (697)
                      +.++.|+.+|++...  ++...|...+.....                  .+..+.|..+|++....+.. +...+...+
T Consensus       273 g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~------------------~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll  332 (697)
T PLN03081        273 GDIEDARCVFDGMPE--KTTVAWNSMLAGYAL------------------HGYSEEALCLYYEMRDSGVSIDQFTFSIMI  332 (697)
T ss_pred             CCHHHHHHHHHhCCC--CChhHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            789999999987632  334467666655433                  25578999999998776432 456677778


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA  549 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y  549 (697)
                      ..+.+.|.+++|.+++..+++..++.+..++...|+...+.|.          ++.+.++|++..+  |   ....|...
T Consensus       333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~----------~~~A~~vf~~m~~--~---d~~t~n~l  397 (697)
T PLN03081        333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR----------MEDARNVFDRMPR--K---NLISWNAL  397 (697)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC----------HHHHHHHHHhCCC--C---CeeeHHHH
Confidence            8888999999999999999866778888899999999888774          7899999998643  2   23458777


Q ss_pred             HHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHH
Q 005434          550 LKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL--PRPGLVLYQNCIELE  625 (697)
Q Consensus       550 ~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~--~p~~~~~~~~~i~lE  625 (697)
                      +.-+...+  +.+..+|+++...     +..+....+...+.-....|.+++|..+|+.+.+.  ..|+...|..++++-
T Consensus       398 I~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        398 IAGYGNHGRGTKAVEMFERMIAE-----GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            77665555  6788888887642     11112222334455456789999999999999863  345566788888888


Q ss_pred             hccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          626 NNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       626 ~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      -..|      .++.|.++|+.+-  ...+..+|...+.--..+|+.+.+..++++.+..-++
T Consensus       473 ~r~G------~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        473 GREG------LLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE  526 (697)
T ss_pred             HhcC------CHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence            8888      8999999987641  1145578999998888999999999999988765554

>TIGR00540 hemY_coli hemY protein

Probab=99.01  E-value=1e-06  Score=96.36  Aligned_cols=283  Identities=9%  Similarity=0.018  Sum_probs=202.5

Q ss_pred             cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHH
Q 005434          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMD  422 (697)
Q Consensus       345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~  422 (697)
                      ....+++.+.+..+..|+........|+....             .++.+.|...|+++.+..|...  +-..++.....
T Consensus        99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-------------~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-------------RGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            45778888888877777766667777787764             4789999999999998888764  22334444332


Q ss_pred             HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH-----
Q 005434          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-----  497 (697)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----  497 (697)
                                        .+..+.|+..++..++..|.++.++...+.++...|+.++|.+++.+..+...++..     
T Consensus       166 ------------------~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l  227 (409)
T TIGR00540       166 ------------------QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL  227 (409)
T ss_pred             ------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence                              355789999999999999999999999999999999999999999998843233322     


Q ss_pred             --HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh--hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhh
Q 005434          498 --QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--ESESLWLMALKFFMNQK--HYFDKLVEIALISV  571 (697)
Q Consensus       498 --~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~  571 (697)
                        ..|...+.    .+.          .+...+.+.++....|..  +...++..++..+...+  +.+..+++++++..
T Consensus       228 ~~~a~~~~l~----~~~----------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~  293 (409)
T TIGR00540       228 EQKAEIGLLD----EAM----------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL  293 (409)
T ss_pred             HHHHHHHHHH----HHH----------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence              22222221    111          111223455555556643  35788888888776665  57888888888643


Q ss_pred             hhCCCCCCCCChH-HHHHHHH-HHhCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhccCCCCCcccHHHHHHHHH--
Q 005434          572 AKDGGGESGFSLP-SAIINLV-IQKDGIQQAREMYKRFLALPRPGL--VLYQNCIELENNLASVGDKDSLVNARKLFE--  645 (697)
Q Consensus       572 ~~~~~~~~~~~l~-~~yl~~~-~~~~~~~~AR~iy~~~i~~~p~~~--~~~~~~i~lE~~~~~~~~~~~~~raR~lye--  645 (697)
                      +..      .... ..+.... ...++.+++++..+++++..|.+.  .+...+..+....+      +.+.|++.|+  
T Consensus       294 pd~------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~------~~~~A~~~le~a  361 (409)
T TIGR00540       294 GDD------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG------EFIEAADAFKNV  361 (409)
T ss_pred             CCc------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc------cHHHHHHHHHHh
Confidence            321      1110 1222221 234778999999999999999998  88888888888888      8999999999  


Q ss_pred             HHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          646 SALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       646 ~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      .++...|+... ...+.......|+.+.|.++|++|+.-+
T Consensus       362 ~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       362 AACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            56666664444 5589999999999999999999997654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.6e-05  Score=81.82  Aligned_cols=200  Identities=14%  Similarity=0.126  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchH
Q 005434          445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL  524 (697)
Q Consensus       445 ~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~  524 (697)
                      ++--..|..|...+|.++++|..-+++..-.+++++|..=+++++ ...|.+.--+.+..-++-+.+          .++
T Consensus       377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~----------k~~  445 (606)
T KOG0547|consen  377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI-SLDPENAYAYIQLCCALYRQH----------KIA  445 (606)
T ss_pred             HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHH----------HHH
Confidence            344555666666666666666666666666666666666666666 555554333322222222222          255


Q ss_pred             HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCC--CCCCCChHH--HHHHHHHHhCCHH
Q 005434          525 SIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGG--GESGFSLPS--AIINLVIQKDGIQ  598 (697)
Q Consensus       525 ~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~--~~~~~~l~~--~yl~~~~~~~~~~  598 (697)
                      ++...|+.+++++|.  +..++..+++.+..++  +.+.+-|+.|+..-+....  +...+-+-.  ..+.|   .+++.
T Consensus       446 ~~m~~Fee~kkkFP~--~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw---k~d~~  520 (606)
T KOG0547|consen  446 ESMKTFEEAKKKFPN--CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW---KEDIN  520 (606)
T ss_pred             HHHHHHHHHHHhCCC--CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch---hhhHH
Confidence            566666666666664  2455555555554444  3455555555542111000  000011111  11223   38999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 005434          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET  666 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~  666 (697)
                      +|-++..+||+..|.+-..+..++.+|...+      ++++|-++||++...--+..++-..|.==|-
T Consensus       521 ~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~------~i~eAielFEksa~lArt~~E~~~a~s~aeA  582 (606)
T KOG0547|consen  521 QAENLLRKAIELDPKCEQAYETLAQFELQRG------KIDEAIELFEKSAQLARTESEMVHAYSLAEA  582 (606)
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999988889999999999999      9999999999999864444455444443333

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.95  E-value=2.2e-06  Score=93.25  Aligned_cols=260  Identities=14%  Similarity=0.028  Sum_probs=176.5

Q ss_pred             HHHHHHhc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHH
Q 005434          165 MEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNK  242 (697)
Q Consensus       165 ~~~~~~~~-~~~~~~~~~ral~~~p~~~-~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~  242 (697)
                      +......| ...+...|.++....|++. ...+..+.... ..|+.+.|...++++++..|+++.+...........++.
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence            33334445 4678899999999888864 34445577775 789999999999999999999887666666555444332


Q ss_pred             HHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhc
Q 005434          243 LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA  322 (697)
Q Consensus       243 ~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~  322 (697)
                      .                                                                   .|..++....+.
T Consensus       204 ~-------------------------------------------------------------------~a~~~l~~l~k~  216 (398)
T PRK10747        204 S-------------------------------------------------------------------SLLDILPSMAKA  216 (398)
T ss_pred             H-------------------------------------------------------------------HHHHHHHHHHHc
Confidence            2                                                                   223333333322


Q ss_pred             CCCchHHHH-----HHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHH
Q 005434          323 LPSSFNLRQ-----RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAI  397 (697)
Q Consensus       323 ~p~~~~~~~-----~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~  397 (697)
                      .+.+.+-..     .+......-......+....+.+.+.+..|+++..+..+|+..+.             .|..+.|.
T Consensus       217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-------------~g~~~~A~  283 (398)
T PRK10747        217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-------------CDDHDTAQ  283 (398)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-------------CCCHHHHH
Confidence            211111000     111111110000112445555556556678899999999999875             47899999


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 005434          398 QVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK  477 (697)
Q Consensus       398 ~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~  477 (697)
                      .+.+++++.-+...+...|....                    .+..+++....++.++.+|.++.+...++.+..+.++
T Consensus       284 ~~L~~~l~~~~~~~l~~l~~~l~--------------------~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~  343 (398)
T PRK10747        284 QIILDGLKRQYDERLVLLIPRLK--------------------TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE  343 (398)
T ss_pred             HHHHHHHhcCCCHHHHHHHhhcc--------------------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence            99999999766665666565431                    1335778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          478 LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       478 ~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      +++|++.+++++ ...|++.. +.....+....|          +.+.+.+.|.+++..+
T Consensus       344 ~~~A~~~le~al-~~~P~~~~-~~~La~~~~~~g----------~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        344 WQEASLAFRAAL-KQRPDAYD-YAWLADALDRLH----------KPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHH-hcCCCHHH-HHHHHHHHHHcC----------CHHHHHHHHHHHHhhh
Confidence            999999999999 77788655 334455555555          3678888999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.91  E-value=3.4e-06  Score=91.75  Aligned_cols=284  Identities=11%  Similarity=0.028  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHH-HHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWL-ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI  424 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~-a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~  424 (697)
                      ...+++.+...... +++|.+...+ |.....             .++.+.|...|+++.+..|+..+........... 
T Consensus       100 ~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~-------------~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-  164 (398)
T PRK10747        100 YQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQ-------------RGDEARANQHLERAAELADNDQLPVEITRVRIQL-  164 (398)
T ss_pred             HHHHHHHHHHHHhc-ccchHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-
Confidence            34555555554333 2335554443 454343             4789999999999999888865322112111111 


Q ss_pred             cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH---
Q 005434          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL---  501 (697)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~---  501 (697)
                                     ..+..+.|...+++.+..+|.++......+..+...|+.++|..++.+.. +..+.+.....   
T Consensus       165 ---------------~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~  228 (398)
T PRK10747        165 ---------------ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLE  228 (398)
T ss_pred             ---------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHH
Confidence                           13567899999999999999999999999999999999999999999888 44343322221   


Q ss_pred             --HHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh--hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC
Q 005434          502 --LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG  575 (697)
Q Consensus       502 --~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~  575 (697)
                        .++.+......       ..+.+.    +.+..+.+|..  +...++..|+..+...+  +.+..+.+++++. +   
T Consensus       229 ~~a~~~l~~~~~~-------~~~~~~----l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~---  293 (398)
T PRK10747        229 QQAWIGLMDQAMA-------DQGSEG----LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-Q---  293 (398)
T ss_pred             HHHHHHHHHHHHH-------hcCHHH----HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C---
Confidence              12222211111       002333    33434434321  24677888887666655  5677777777652 1   


Q ss_pred             CCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434          576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (697)
Q Consensus       576 ~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~  655 (697)
                         ..+.+...|...  ..++.+++.+..++.++..|.+..+...+..+-...+      +...||+.|++++...|++ 
T Consensus       294 ---~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~------~~~~A~~~le~al~~~P~~-  361 (398)
T PRK10747        294 ---YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG------EWQEASLAFRAALKQRPDA-  361 (398)
T ss_pred             ---CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHhcCCCH-
Confidence               133444444443  3489999999999999999999999999999988888      8999999999999987754 


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          656 SLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       656 ~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      ..+..+.+.....|+.+.|..+|.+|+....+
T Consensus       362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~  393 (398)
T PRK10747        362 YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ  393 (398)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence            44667899999999999999999999886643

>PRK12370 invasion protein regulator; Provisional

Probab=98.88  E-value=1.2e-06  Score=99.58  Aligned_cols=256  Identities=9%  Similarity=-0.037  Sum_probs=171.9

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHH--HHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLY--TKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~y--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~  466 (697)
                      .+.++.|...|++|++..|+.. .|..-  +.+....... .          ...+..+.|...+++|+..+|.++..|.
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~----------~~~~~~~~A~~~~~~Al~ldP~~~~a~~  342 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-F----------DKQNAMIKAKEHAIKATELDHNNPQALG  342 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-c----------ccchHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3568899999999999988754 22211  1111111100 0          0134578999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHH
Q 005434          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW  546 (697)
Q Consensus       467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW  546 (697)
                      ..+.++...|++++|...+++|+ ...|++...|..+..+....|          +.+++...|++++..-|.......+
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~G----------~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQAN-LLSPISADIKYYYGWNLFMAG----------QLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCCCChhhHHH
Confidence            99999999999999999999999 899999999988887777666          4788999999999877753222233


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 005434          547 LMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN  626 (697)
Q Consensus       547 ~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~  626 (697)
                      ...+.+...+-+.+...+++++...++.     .+.........+...|+.++|+..+.++....|.+...+......-.
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            3333333333256667777776432221     12222223344557899999999999988877765554443333333


Q ss_pred             ccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434          627 NLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVYWRARK  683 (697)
Q Consensus       627 ~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy~ral~  683 (697)
                      ..+        ++++..++..+......  ..-|  ...|+.-+|+.+.+..+ .++.+
T Consensus       487 ~~g--------~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        487 QNS--------ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             ccH--------HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence            333        47777777766654422  2333  67788889999888776 55543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.87  E-value=7.7e-07  Score=84.91  Aligned_cols=192  Identities=18%  Similarity=0.041  Sum_probs=130.9

Q ss_pred             HHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHH
Q 005434          471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMAL  550 (697)
Q Consensus       471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~  550 (697)
                      =++..|++..|++-+++|+ +..|++...|.....+....|.          .+.+.+-|++|++.-|..  ..+-.-|-
T Consensus        44 ~YL~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge----------~~~A~e~YrkAlsl~p~~--GdVLNNYG  110 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGE----------NDLADESYRKALSLAPNN--GDVLNNYG  110 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCC----------hhhHHHHHHHHHhcCCCc--cchhhhhh
Confidence            3455666666666666666 5666666666666666655553          455566666666544432  23444454


Q ss_pred             HHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH---HHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 005434          551 KFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN---LVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (697)
Q Consensus       551 ~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~---~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE  625 (697)
                      -|+...+  +.+..-|++|+...  .     -......|.+   -..+.|..+.|+..|++++...|........++.++
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~~P--~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~  183 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALADP--A-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH  183 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHhCC--C-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence            4555444  34445555555421  1     1111222211   134689999999999999999999888899999999


Q ss_pred             hccCCCCCcccHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          626 NNLASVGDKDSLVNARKLFESALATYDQNT-SLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       626 ~~~~~~~~~~~~~raR~lye~al~~~~~~~-~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      .+-+      +...||..+++..+..+.+. ++|+. |+++...||.+.+...-.+..+.||.+.
T Consensus       184 ~~~~------~y~~Ar~~~~~~~~~~~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         184 YKAG------DYAPARLYLERYQQRGGAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             Hhcc------cchHHHHHHHHHHhcccccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            9888      89999999999998877444 67775 7899999999999997777788888764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.86  E-value=0.00019  Score=80.80  Aligned_cols=275  Identities=14%  Similarity=0.142  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHhcCCHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIY-----AAAWEFDHNLNVTAAR  212 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~-----~a~~e~~~~~~~~~aR  212 (697)
                      .+++++..|.||+...|.+.++-..++.++.+.|. .++-..|.++++..|...--|+.     ++++.. ..+.-+.|-
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~-~~~~~e~a~  300 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI-THNERERAA  300 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence            46677778888888888887777778888777773 46777788888887743333332     234443 344447777


Q ss_pred             HHHHHhhhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCC
Q 005434          213 ALMQNGLRVCPT--SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (697)
Q Consensus       213 ~~~~r~l~~~p~--~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  290 (697)
                      ++++.++..+.+  +..--..|+.+-+.......+-+.+........+.|+     ..|...                  
T Consensus       301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~-----~e~~~~------------------  357 (895)
T KOG2076|consen  301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD-----SEWDTD------------------  357 (895)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh-----hhhhhh------------------
Confidence            777777774432  1111222222222211111111111100000001110     011000                  


Q ss_pred             CCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-cccCcHHHHHHHHHHHHhhC--CC-Chhh
Q 005434          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDF--LV-DPKY  366 (697)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~~~~il~~~~~~~--p~-~~~~  366 (697)
                                          .-+...-.++-.+|+........+...... .+ ...+..+.++..+....  |. .+.+
T Consensus       358 --------------------~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L-~~~e~~e~ll~~l~~~n~~~~d~~dL  416 (895)
T KOG2076|consen  358 --------------------ERRREEPNALCEVGKELSYDLRVIRLMICLVHL-KERELLEALLHFLVEDNVWVSDDVDL  416 (895)
T ss_pred             --------------------hhccccccccccCCCCCCccchhHhHhhhhhcc-cccchHHHHHHHHHHhcCChhhhHHH
Confidence                                000000011111111110000001111110 11 12234455555544443  33 3667


Q ss_pred             HHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHH
Q 005434          367 WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI  444 (697)
Q Consensus       367 w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (697)
                      ..-+|+.++.             .+.+..|...|-..+..-+...  +|-.-...+..                  .+..
T Consensus       417 ~~d~a~al~~-------------~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~------------------l~e~  465 (895)
T KOG2076|consen  417 YLDLADALTN-------------IGKYKEALRLLSPITNREGYQNAFVWYKLARCYME------------------LGEY  465 (895)
T ss_pred             HHHHHHHHHh-------------cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH------------------HhhH
Confidence            7777887765             4778889999988876554333  67666655543                  3557


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       445 ~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      +.|...|+.++...|.+.+.-+..+.++.+.|++++|.++++...
T Consensus       466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            899999999999999999999999999999999999999888744

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.85  E-value=1.2e-06  Score=86.74  Aligned_cols=200  Identities=15%  Similarity=0.024  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~  541 (697)
                      ...+...+..+...|++++|...+++++ ...|.+...|.....+....+          +.+.+.+.|++++...|.. 
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~al~~~~~~-   98 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKAL-EHDPDDYLAYLALALYYQQLG----------ELEKAEDSFRRALTLNPNN-   98 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCC-
Confidence            4566667777777888888888888887 567777777776666665554          3677777788887765532 


Q ss_pred             hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHH
Q 005434          542 SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ  619 (697)
Q Consensus       542 ~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~  619 (697)
                       ...|..+...+...+  +.+...|++++.....    ......+..........|+++.|.+.|.+++...|.....+.
T Consensus        99 -~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  173 (234)
T TIGR02521        99 -GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL  173 (234)
T ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence             344444444443333  4566667766642110    011222233334456789999999999999999888888888


Q ss_pred             HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434          620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKT  684 (697)
Q Consensus       620 ~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~  684 (697)
                      ..+.+....+      +.++|...|++++...+.++..|...+......|+.+.+..+.+.+...
T Consensus       174 ~la~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       174 ELAELYYLRG------QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            8888887787      8999999999999987777777778888898999999999987776554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=6.6e-05  Score=78.43  Aligned_cols=184  Identities=11%  Similarity=0.029  Sum_probs=129.3

Q ss_pred             hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       440 ~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      ..+.-++|...|++|+..||.....|...+.-+...++...|.+.|++|+ ..+|.+.+-|...-+.....+=       
T Consensus       342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~M-------  413 (559)
T KOG1155|consen  342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKM-------  413 (559)
T ss_pred             HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcc-------
Confidence            34667899999999999999999999988888888899999999999999 8999999999765544332210       


Q ss_pred             ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHH
Q 005434          520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (697)
Q Consensus       520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~  599 (697)
                         ..=+.=.|++|+..-|+.  ..+|....                                      +-..+.+.++.
T Consensus       414 ---h~YaLyYfqkA~~~kPnD--sRlw~aLG--------------------------------------~CY~kl~~~~e  450 (559)
T KOG1155|consen  414 ---HFYALYYFQKALELKPND--SRLWVALG--------------------------------------ECYEKLNRLEE  450 (559)
T ss_pred             ---hHHHHHHHHHHHhcCCCc--hHHHHHHH--------------------------------------HHHHHhccHHH
Confidence               111222356666544433  45565433                                      22344567788


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC---C-CCc-----hHHHHHHHHHHhcCC
Q 005434          600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---D-QNT-----SLWRDYYSTETKLGT  670 (697)
Q Consensus       600 AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~---~-~~~-----~lW~~y~~fE~~~G~  670 (697)
                      |.+.|.+++.........+...+++.++++      +.+.|-..|++.+...   | .++     -+|  -++++.+.++
T Consensus       451 AiKCykrai~~~dte~~~l~~LakLye~l~------d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~  522 (559)
T KOG1155|consen  451 AIKCYKRAILLGDTEGSALVRLAKLYEELK------DLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKD  522 (559)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcc
Confidence            888888888877776677777788877777      7788888888888743   2 111     456  4778888888


Q ss_pred             hhhHHHHHHHHH
Q 005434          671 SETATAVYWRAR  682 (697)
Q Consensus       671 ~~~a~~vy~ral  682 (697)
                      .+.|....-+++
T Consensus       523 ~~~As~Ya~~~~  534 (559)
T KOG1155|consen  523 FDEASYYATLVL  534 (559)
T ss_pred             hHHHHHHHHHHh
Confidence            887776444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.84  E-value=4.9e-06  Score=93.16  Aligned_cols=288  Identities=13%  Similarity=0.065  Sum_probs=194.5

Q ss_pred             cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHH
Q 005434          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM  423 (697)
Q Consensus       345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~  423 (697)
                      ..+.+..|+...++..|..+..|.++|..+..             +|++++|...+--|--..|.+. +|....+..++ 
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-------------rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-  219 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-------------RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-  219 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------------cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Confidence            45789999999999999999999999999865             5889988887777766666654 88877766554 


Q ss_pred             hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH--
Q 005434          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL--  501 (697)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~--  501 (697)
                                       .+.+++|+-.|.+||+.+|.+-++...++.++.+.|+...|...+.+++ .-+|+.--.|.  
T Consensus       220 -----------------~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~p~~d~er~~d  281 (895)
T KOG2076|consen  220 -----------------LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLDPPVDIERIED  281 (895)
T ss_pred             -----------------cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhCCchhHHHHHH
Confidence                             4668999999999999999998988899999999999999999999999 77775322221  


Q ss_pred             ---HHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HH-HHHH------------
Q 005434          502 ---LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HY-FDKL------------  563 (697)
Q Consensus       502 ---~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~-~~~l------------  563 (697)
                         ..++.....+          +.+.+.+.++.++.......+.+-...+++.+....  +. .+.+            
T Consensus       282 ~i~~~~~~~~~~~----------~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~  351 (895)
T KOG2076|consen  282 LIRRVAHYFITHN----------ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD  351 (895)
T ss_pred             HHHHHHHHHHHhh----------HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence               2233333222          236666667777652111111111111222221111  00 0000            


Q ss_pred             -----------------------------HHHHHHhhhhCCC-------------CCCCCChHHHHHHH---HHHhCCHH
Q 005434          564 -----------------------------VEIALISVAKDGG-------------GESGFSLPSAIINL---VIQKDGIQ  598 (697)
Q Consensus       564 -----------------------------~~~a~~~~~~~~~-------------~~~~~~l~~~yl~~---~~~~~~~~  598 (697)
                                                   +..++-.+..+..             .......+..|.+.   +...|.+.
T Consensus       352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~  431 (895)
T KOG2076|consen  352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK  431 (895)
T ss_pred             hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence                                         1111100000000             00011122334333   45678999


Q ss_pred             HHHHHHHHHHhCCCCC-HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHH
Q 005434          599 QAREMYKRFLALPRPG-LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAV  677 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~-~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~v  677 (697)
                      .|-.+|..++..++.+ ..+|...+..+..++      ..+.|-..|++++...|.+.+.=+.-..+-...|+.+.|..+
T Consensus       432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~------e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt  505 (895)
T KOG2076|consen  432 EALRLLSPITNREGYQNAFVWYKLARCYMELG------EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET  505 (895)
T ss_pred             HHHHHHHHHhcCccccchhhhHHHHHHHHHHh------hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence            9999999999887655 458888888888888      889999999999999998888888888888899999977776


Q ss_pred             HHH
Q 005434          678 YWR  680 (697)
Q Consensus       678 y~r  680 (697)
                      .++
T Consensus       506 L~~  508 (895)
T KOG2076|consen  506 LEQ  508 (895)
T ss_pred             Hhc
Confidence            665

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.82  E-value=4.6e-08  Score=102.73  Aligned_cols=131  Identities=18%  Similarity=0.255  Sum_probs=106.5

Q ss_pred             HHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHh
Q 005434           74 IVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR  153 (697)
Q Consensus        74 i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~  153 (697)
                      |.+|...|+.+|+.+|.++..|++||+|...+...-..+                    .....+...+-.+||++||+.
T Consensus         1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------------~~~~~a~~E~klsilerAL~~   60 (321)
T PF08424_consen    1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------------KAERRALAERKLSILERALKH   60 (321)
T ss_pred             CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------------hhhHHHHHHHHHHHHHHHHHh
Confidence            357788999999999999999999999986653221100                    011224566778999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhhCCC
Q 005434          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH--NLNVTAARALMQNGLRVCPT  224 (697)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~--~~~~~~aR~~~~r~l~~~p~  224 (697)
                      +|++..||..|++.+.+.- ...+.+.+++++..+|+++.||+.|+.|....  .-+++.+|.+|.++|+....
T Consensus        61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~  134 (321)
T PF08424_consen   61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR  134 (321)
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999988765 45789999999999999999999999998632  24689999999999988753

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.68  E-value=4.8e-06  Score=82.47  Aligned_cols=187  Identities=10%  Similarity=-0.044  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..+.+...|++++..+|.+...|...+..+...|++++|.+.+++++ ...|.+...|..+..+....+          
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~g----------  113 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGTFLCQQG----------  113 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcc----------
Confidence            457889999999999999999999999999999999999999999999 788998888888877776665          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~  599 (697)
                      +.+++.+.|++++...+.......|......+...+  +.+...|++++...+.      ....+..........|++++
T Consensus       114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHHcCCHHH
Confidence            478888999999874322222334443333333333  5677888888764321      22333344555667899999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC
Q 005434          600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY  651 (697)
Q Consensus       600 AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~  651 (697)
                      |...+++++...|.....+...+.+....+      +.+.++.+.+.+....
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALG------DVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHh------hHHHHHHHHHHHHhhC
Confidence            999999999987777776666777777777      8899999888877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=1.3e-05  Score=87.30  Aligned_cols=262  Identities=13%  Similarity=0.059  Sum_probs=175.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCc---hHHHHH-HHHHHHHccccCcHHHHHHH-HHHHHhhCCCChhhHHHHHHh
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSS---FNLRQR-FFEIVEATNLAQSDDMHDKI-LSDMQRDFLVDPKYWDWLARL  373 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~---~~~~~~-~~~~~~~fe~~~~~~~~~~i-l~~~~~~~p~~~~~w~~~a~~  373 (697)
                      .....|+-.+++.|..+|+.+-..-|--   +++... +|-+        .++.+-.. -+.++...|++|+.|+.++..
T Consensus       359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL--------q~~v~Ls~Laq~Li~~~~~sPesWca~GNc  430 (638)
T KOG1126|consen  359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL--------QDEVALSYLAQDLIDTDPNSPESWCALGNC  430 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH--------HhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence            3345566667888999999887654442   222211 1111        11222333 345777899999999999988


Q ss_pred             hcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (697)
Q Consensus       374 ~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~  453 (697)
                      +-.             +++.+.|.+.|++|++-.|.    .+|+-.+...             ........+.|..-|..
T Consensus       431 fSL-------------Qkdh~~Aik~f~RAiQldp~----faYayTLlGh-------------E~~~~ee~d~a~~~fr~  480 (638)
T KOG1126|consen  431 FSL-------------QKDHDTAIKCFKRAIQLDPR----FAYAYTLLGH-------------ESIATEEFDKAMKSFRK  480 (638)
T ss_pred             hhh-------------hhHHHHHHHHHHHhhccCCc----cchhhhhcCC-------------hhhhhHHHHhHHHHHHh
Confidence            753             58899999999999998886    3566555431             01234668999999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (697)
Q Consensus       454 al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a  533 (697)
                      |+..+|.+...|....-.+.+.+.++.|.--+++|+ ..+|.+..+-.-.-....+.+.          .+++.++|++|
T Consensus       481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~----------~d~AL~~~~~A  549 (638)
T KOG1126|consen  481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKR----------KDKALQLYEKA  549 (638)
T ss_pred             hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhh----------hhHHHHHHHHH
Confidence            999999999999999999999999999999999999 8999987777666666666553          58889999999


Q ss_pred             HhhcChhhhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Q 005434          534 LTKVSALESESLWLMALKFF-MNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPR  612 (697)
Q Consensus       534 l~~~p~~~~~~lW~~y~~~~-~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p  612 (697)
                      +..-| ++....+.+.--++ ..+.+.+-..++.....++..      ..+.-....-..+.|+.+.|..=|.-|..+.|
T Consensus       550 ~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e------s~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  550 IHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKELVPQE------SSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch------HHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            86544 33344443322222 222233444445433322211      11111122234567888888888888888877


Q ss_pred             CCHH
Q 005434          613 PGLV  616 (697)
Q Consensus       613 ~~~~  616 (697)
                      ...+
T Consensus       623 kg~~  626 (638)
T KOG1126|consen  623 KGAQ  626 (638)
T ss_pred             ccch
Confidence            7655

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.9e-05  Score=83.03  Aligned_cols=257  Identities=13%  Similarity=0.094  Sum_probs=186.2

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      +....|.+..+..+|-..+..--+|--+...| ..++-.+=-+.+..+|..+--|+..+-+.+ ..|++..||+.|.++.
T Consensus       261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl-~i~k~seARry~SKat  339 (611)
T KOG1173|consen  261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL-MIGKYSEARRYFSKAT  339 (611)
T ss_pred             HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH-HhcCcHHHHHHHHHHh
Confidence            44557888889999999888877777444555 346666777788899999999999999987 7899999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (697)
                      ...|.-...|+.|...---.                                                            
T Consensus       340 ~lD~~fgpaWl~fghsfa~e------------------------------------------------------------  359 (611)
T KOG1173|consen  340 TLDPTFGPAWLAFGHSFAGE------------------------------------------------------------  359 (611)
T ss_pred             hcCccccHHHHHHhHHhhhc------------------------------------------------------------
Confidence            99999889999997432110                                                            


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCC
Q 005434          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV  379 (697)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~  379 (697)
                             ..-+.|...|..|-+..|.... -.-|+  =-+|...++.+++++.+.++...+|.+|-....++-....   
T Consensus       360 -------~EhdQAmaaY~tAarl~~G~hl-P~LYl--gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~---  426 (611)
T KOG1173|consen  360 -------GEHDQAMAAYFTAARLMPGCHL-PSLYL--GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT---  426 (611)
T ss_pred             -------chHHHHHHHHHHHHHhccCCcc-hHHHH--HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh---
Confidence                   0124677888888877665421 01111  1123333457899999999999999998775554444332   


Q ss_pred             CCCCCCcCccchHHHHHHHHHHHHhhcCCch---h-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434          380 SKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (697)
Q Consensus       380 ~~~~~~~~~~~~~~~~a~~vye~al~~~~~~---~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al  455 (697)
                                .+.+.+|...|+.++..+++.   + .|.--..-+ ....             -..+..+.|...|++|+
T Consensus       427 ----------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL-GH~~-------------Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  427 ----------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL-GHAY-------------RKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             ----------HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH-HHHH-------------HHHhhHHHHHHHHHHHH
Confidence                      366889999999999655432   1 243221110 0000             01345678999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                      ...|.+.+....-+-++...|+++.|.+-+-+|+ ...|++
T Consensus       483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n  522 (611)
T KOG1173|consen  483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDN  522 (611)
T ss_pred             HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCcc
Confidence            9999999998888888888999999999999999 788886

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.59  E-value=1.4e-05  Score=83.32  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=43.2

Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CcHHHHHHHHHHHHH
Q 005434          451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIR  509 (697)
Q Consensus       451 ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~  509 (697)
                      ++.++..+|...+.|...+..+...|++++|...+++|+ ...| +.++.-...++++..
T Consensus       225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al-~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL-ANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHH
Confidence            344444455667889999999999999999999999999 5665 556665556655543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.58  E-value=0.0023  Score=69.94  Aligned_cols=390  Identities=13%  Similarity=0.057  Sum_probs=214.8

Q ss_pred             CchHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005434          173 NGRMKKVLAQVIRFHPKVPG-VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG  251 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~-lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~  251 (697)
                      +.+-.++.+..|..+|.++. +=+.-....  ..|+-+.|-....+|++..+.|+-.|.-|.-+--.             
T Consensus        23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~--~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-------------   87 (700)
T KOG1156|consen   23 YKKGLKLIKQILKKFPEHGESLAMKGLTLN--CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-------------   87 (700)
T ss_pred             HHhHHHHHHHHHHhCCccchhHHhccchhh--cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-------------
Confidence            44556778888889998764 444444433  67999999999999999999999999887522100             


Q ss_pred             cccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHH
Q 005434          252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ  331 (697)
Q Consensus       252 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~  331 (697)
                                                                            ..+++.|...|++|+..-|++.++|.
T Consensus        88 ------------------------------------------------------dK~Y~eaiKcy~nAl~~~~dN~qilr  113 (700)
T KOG1156|consen   88 ------------------------------------------------------DKKYDEAIKCYRNALKIEKDNLQILR  113 (700)
T ss_pred             ------------------------------------------------------hhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence                                                                  12567889999999999899988887


Q ss_pred             HHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcC---C
Q 005434          332 RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV---P  408 (697)
Q Consensus       332 ~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~---~  408 (697)
                      .+--+-.+...   .+.....=..+++..|.....|+.+|.-...             .+....|..+.+.-.++.   |
T Consensus       114 DlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-------------~g~y~~A~~il~ef~~t~~~~~  177 (700)
T KOG1156|consen  114 DLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHL-------------LGEYKMALEILEEFEKTQNTSP  177 (700)
T ss_pred             HHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhccCC
Confidence            76444443331   1223333456788899999999998876654             366777777766655554   4


Q ss_pred             chhHHHHHHHHHH-HHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHH
Q 005434          409 SSMIFDLYTKFLM-DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIAHRYVTLYLQLGKLDEARKL  484 (697)
Q Consensus       409 ~~~lw~~yi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~---~~~lw~~y~~l~~~~~~~~~A~~l  484 (697)
                      ++..+..-..++- .....+             .+   ..+.+++......+.   ....-..-++++.+.+++++|..+
T Consensus       178 s~~~~e~se~~Ly~n~i~~E-------------~g---~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  178 SKEDYEHSELLLYQNQILIE-------------AG---SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------------cc---cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            4332222111111 110000             00   112222222222111   112333457888889999999999


Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh--------------hhHHHHHHHH
Q 005434          485 AAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--------------ESESLWLMAL  550 (697)
Q Consensus       485 ~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--------------~~~~lW~~y~  550 (697)
                      +...+ ..+|++.+-...+....-....         ..+.+-.+|...-...|-.              +.......|+
T Consensus       242 y~~Ll-~rnPdn~~Yy~~l~~~lgk~~d---------~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL  311 (700)
T KOG1156|consen  242 YRRLL-ERNPDNLDYYEGLEKALGKIKD---------MLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL  311 (700)
T ss_pred             HHHHH-hhCchhHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence            99999 7899876655544433311100         0111112222211111100              0011111111


Q ss_pred             HHHHhhh-----HHHHH---------HHHHHHHhhhhCC-----------CC--CCCCChHHHHH--HHHHHhCCHHHHH
Q 005434          551 KFFMNQK-----HYFDK---------LVEIALISVAKDG-----------GG--ESGFSLPSAII--NLVIQKDGIQQAR  601 (697)
Q Consensus       551 ~~~~~~~-----~~~~~---------l~~~a~~~~~~~~-----------~~--~~~~~l~~~yl--~~~~~~~~~~~AR  601 (697)
                      .-....+     ..++.         +.++.+.......           +.  ++...+|..|.  .-....|.++.|.
T Consensus       312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~  391 (700)
T KOG1156|consen  312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL  391 (700)
T ss_pred             HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence            1111111     01111         2222222111000           00  11223344331  1123468889999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 005434          602 EMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYW  679 (697)
Q Consensus       602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~  679 (697)
                      .....||..+|+-+++|+.=+.+-...|      +++.|-.+++.|-+....+.-+=-.++..-.+....+.|..+..
T Consensus       392 ~yId~AIdHTPTliEly~~KaRI~kH~G------~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s  463 (700)
T KOG1156|consen  392 EYIDLAIDHTPTLIELYLVKARIFKHAG------LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS  463 (700)
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence            9999999988888888877777766666      77788888888776643222232346666666666666655543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.55  E-value=0.0033  Score=70.02  Aligned_cols=441  Identities=17%  Similarity=0.112  Sum_probs=248.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (697)
Q Consensus       138 ~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~  216 (697)
                      .+.-.+.-+++--+..|.++..+|-...-+....| +..+.+.|++++...-.....|..++.-.. ..|.-..|-.+++
T Consensus       303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~s-aag~~s~Av~ll~  381 (799)
T KOG4162|consen  303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYS-AAGSDSKAVNLLR  381 (799)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH-HhccchHHHHHHH
Confidence            34445556666666778888899987776666666 678899999998877777788988877664 6677788999999


Q ss_pred             HhhhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434          217 NGLRVC--PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (697)
Q Consensus       217 r~l~~~--p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  294 (697)
                      ..+...  |.+..+.+...++-......++   .                                              
T Consensus       382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~e---e----------------------------------------------  412 (799)
T KOG4162|consen  382 ESLKKSEQPSDISVLLMASKLCIERLKLVE---E----------------------------------------------  412 (799)
T ss_pred             hhcccccCCCcchHHHHHHHHHHhchhhhh---h----------------------------------------------
Confidence            999888  6555555555544332111100   0                                              


Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHh---cCCCchHHHHHHHHHHHHcccc-C-----cHHHHHHHHHHHHhhCCCChh
Q 005434          295 MESQKSVDLFREQGLRVLQTIYSGAVE---ALPSSFNLRQRFFEIVEATNLA-Q-----SDDMHDKILSDMQRDFLVDPK  365 (697)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~al~---~~p~~~~~~~~~~~~~~~fe~~-~-----~~~~~~~il~~~~~~~p~~~~  365 (697)
                                   +.+-|..+...+-.   .++.-..+..-..--+...... .     .....-..++++++.-|+||.
T Consensus       413 -------------gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  413 -------------GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             -------------HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence                         01111111111100   0000000000000000000000 0     012233346666777777776


Q ss_pred             hHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434          366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (697)
Q Consensus       366 ~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (697)
                      .-+++|-.+-.             .++++.|.+.-.++++-.+...  -|...+-.. .                 .++.
T Consensus       480 ~if~lalq~A~-------------~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl-S-----------------a~kr  528 (799)
T KOG4162|consen  480 VIFYLALQYAE-------------QRQLTSALDYAREALALNRGDSAKAWHLLALVL-S-----------------AQKR  528 (799)
T ss_pred             HHHHHHHHHHH-------------HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-h-----------------hhhh
Confidence            65555555433             3567777777777776654332  444333211 1                 1344


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHH---------HHHHHH-Hhcc-
Q 005434          444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL---------RISVEI-RCVT-  512 (697)
Q Consensus       444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~---------~i~l~~-~~~~-  512 (697)
                      ...|..+-+.++...+.+..+-..-+.++...|+.++|...+...+        .+|..         .+.++- +.+- 
T Consensus       529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L--------~~we~~~~~q~~~~~g~~~~lk~~l~  600 (799)
T KOG4162|consen  529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL--------ALWEAEYGVQQTLDEGKLLRLKAGLH  600 (799)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH--------HHHHhhhhHhhhhhhhhhhhhhcccc
Confidence            5566666666666655555555555666666677777666655544        46651         111111 1110 


Q ss_pred             cCCCCCCccc--hHHHHH---------HHHHHHhh---cChhh-----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhh
Q 005434          513 RNSFSPSKAD--ILSIFE---------LLKCILTK---VSALE-----SESLWLMALKFFMNQK--HYFDKLVEIALISV  571 (697)
Q Consensus       513 ~~~~~~~~~~--~~~~~~---------~f~~al~~---~p~~~-----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~  571 (697)
                      ++...+.+++  -..+-.         .|+..+..   .|.++     ...+|...++++...+  +.+......|-+.+
T Consensus       601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~  680 (799)
T KOG4162|consen  601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID  680 (799)
T ss_pred             cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence            0000011000  000000         01111111   11111     2568888777665433  33433333333322


Q ss_pred             hhCCCCCCCCChHHHHHH--HHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHh
Q 005434          572 AKDGGGESGFSLPSAIIN--LVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALA  649 (697)
Q Consensus       572 ~~~~~~~~~~~l~~~yl~--~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~  649 (697)
                      +        ...+..|..  -....|...+|...|..++...|..+......+.+-...|++    .+...|.+.-.|++
T Consensus       681 ~--------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~----~la~~~~~L~dalr  748 (799)
T KOG4162|consen  681 P--------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP----RLAEKRSLLSDALR  748 (799)
T ss_pred             h--------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----chHHHHHHHHHHHh
Confidence            1        112222322  234568899999999999999999988888878777777744    77888889999999


Q ss_pred             hCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC-Ccc-ccc
Q 005434          650 TYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK-DST-ALT  692 (697)
Q Consensus       650 ~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~-~~~-~f~  692 (697)
                      ..|.+++.|..-...-+..|+.+.|..+|.-|++-=+ +|+ .|.
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs  793 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS  793 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence            9999999999999999999999999999999876543 333 554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=0.0024  Score=67.10  Aligned_cols=252  Identities=11%  Similarity=0.040  Sum_probs=161.3

Q ss_pred             hhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCC
Q 005434          305 REQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK  381 (697)
Q Consensus       305 ~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~  381 (697)
                      ...+.+.|..+|+..+++.|-.+   ++....+  |.+-......-++..    .....---|++.+..|.++-.     
T Consensus       274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~----v~~idKyR~ETCCiIaNYYSl-----  342 (559)
T KOG1155|consen  274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQN----VSNIDKYRPETCCIIANYYSL-----  342 (559)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHH----HHHhccCCccceeeehhHHHH-----
Confidence            34578899999999999876543   2222221  111000000112222    222222336777777777743     


Q ss_pred             CCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC
Q 005434          382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL  460 (697)
Q Consensus       382 ~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~  460 (697)
                              .+..++|...|++||+-.|.-- .|..-=.=..                  .-++...|...|.+|++.+|.
T Consensus       343 --------r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv------------------EmKNt~AAi~sYRrAvdi~p~  396 (559)
T KOG1155|consen  343 --------RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV------------------EMKNTHAAIESYRRAVDINPR  396 (559)
T ss_pred             --------HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH------------------HhcccHHHHHHHHHHHhcCch
Confidence                    5789999999999999888643 4542111001                  123467899999999999999


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      +...|...++.+...+-+.=|.-.+++|+ ..-|++..+|....+...+.+          .++++.+-|.+|+......
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~----------~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKAL-ELKPNDSRLWVALGECYEKLN----------RLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhccccc
Confidence            99999999999999999998999999999 788999999999998887765          3788888999998755432


Q ss_pred             hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH---HHHHHHHHhCCHHHHHHHHHHHH
Q 005434          541 ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS---AIINLVIQKDGIQQAREMYKRFL  608 (697)
Q Consensus       541 ~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~---~yl~~~~~~~~~~~AR~iy~~~i  608 (697)
                       ..-+|.. ++..+..+  +.+-..|++.+........  ..+.+..   ..+.|..+.+++++|-..-.+++
T Consensus       466 -~~~l~~L-akLye~l~d~~eAa~~yek~v~~~~~eg~--~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  466 -GSALVRL-AKLYEELKDLNEAAQYYEKYVEVSELEGE--IDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             -hHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence             3445543 34444333  3455667776653211110  1222222   23556667777777765444443

>PRK12370 invasion protein regulator; Provisional

Probab=98.51  E-value=2.7e-05  Score=88.59  Aligned_cols=218  Identities=11%  Similarity=-0.068  Sum_probs=150.0

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ---------LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~---------~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                      .+..+.|...|++|+..+|.++..|...+..+..         .+++++|...+++|+ ...|++...|.....+....+
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al-~ldP~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT-ELDHNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcc
Confidence            3557899999999999999998888766654432         234789999999999 899999999988777666555


Q ss_pred             ccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH
Q 005434          512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN  589 (697)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~  589 (697)
                                +.+++...|++|+...|..  ...|..+...+...+  +.+...+++++..-+.      ........+.
T Consensus       353 ----------~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~  414 (553)
T PRK12370        353 ----------EYIVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLW  414 (553)
T ss_pred             ----------CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHH
Confidence                      4788999999999887754  345554444343333  5678888888764221      1111111122


Q ss_pred             HHHHhCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhc
Q 005434          590 LVIQKDGIQQAREMYKRFLALP-RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKL  668 (697)
Q Consensus       590 ~~~~~~~~~~AR~iy~~~i~~~-p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~  668 (697)
                      .....|++++|...+++++... |.....+...+.+...+|      +.+.|+..|+++....|.+...+..-...-...
T Consensus       415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G------~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG------KHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC------CHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            2445788999999999999875 445555555555555677      899999999998776665544444444333344


Q ss_pred             CChhhHHHHHHHHHhhc
Q 005434          669 GTSETATAVYWRARKTL  685 (697)
Q Consensus       669 G~~~~a~~vy~ral~~~  685 (697)
                      |  +.+...+++.++..
T Consensus       489 g--~~a~~~l~~ll~~~  503 (553)
T PRK12370        489 S--ERALPTIREFLESE  503 (553)
T ss_pred             H--HHHHHHHHHHHHHh
Confidence            4  46777666655543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.41  E-value=2.8e-05  Score=81.09  Aligned_cols=233  Identities=13%  Similarity=-0.030  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          391 SQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      ...+.+..-+.+.|...+-..  .-..|...  ..+.             ...+..+.|+..|++|+..+|.++..|...
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~--g~~~-------------~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  104 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYER--GVLY-------------DSLGLRALARNDFSQALALRPDMADAYNYL  104 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHH--HHHH-------------HHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            456677788888887554221  11222211  1110             013557889999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM  548 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~  548 (697)
                      +..+...|++++|...+++++ ...|++...|..........+          +.+.+.+.|++++...|......+|..
T Consensus       105 g~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g----------~~~eA~~~~~~al~~~P~~~~~~~~~~  173 (296)
T PRK11189        105 GIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAYLNRGIALYYGG----------RYELAQDDLLAFYQDDPNDPYRALWLY  173 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999 789999999988777766555          478899999999987765433345543


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHh-------CCCCCHHHHHHH
Q 005434          549 ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLA-------LPRPGLVLYQNC  621 (697)
Q Consensus       549 y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~-------~~p~~~~~~~~~  621 (697)
                      ... .....+.+...|+++.....+        ..|. +.......|....+ ..++.+..       ..|.....|...
T Consensus       174 l~~-~~~~~~~A~~~l~~~~~~~~~--------~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~L  242 (296)
T PRK11189        174 LAE-SKLDPKQAKENLKQRYEKLDK--------EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYL  242 (296)
T ss_pred             HHH-ccCCHHHHHHHHHHHHhhCCc--------cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            221 111124555566555432211        1121 11111223444333 23343332       222334556666


Q ss_pred             HHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHHH
Q 005434          622 IELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTET  666 (697)
Q Consensus       622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE~  666 (697)
                      .......|      +.+.|+..|++|+..+| +.++.=..-++++.
T Consensus       243 g~~~~~~g------~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        243 AKYYLSLG------DLDEAAALFKLALANNVYNFVEHRYALLELAL  282 (296)
T ss_pred             HHHHHHCC------CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            66677777      89999999999999876 44444333333333

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=98.38  E-value=2.3e-06  Score=76.46  Aligned_cols=111  Identities=19%  Similarity=0.332  Sum_probs=85.9

Q ss_pred             HHhhHHHHHHHhCCC---CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHH
Q 005434           75 VKQRRKFEYRLKRPS---PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV  151 (697)
Q Consensus        75 ~~kR~~fE~~l~r~~---~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral  151 (697)
                      -++|..||..|..-.   ..+..|++||.|-.+..                        ..    .+...++..+++||+
T Consensus         2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~------------------------p~----~~~~~~L~~lLer~~   53 (126)
T PF08311_consen    2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENY------------------------PS----GGKQSGLLELLERCI   53 (126)
T ss_dssp             HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHC------------------------TT----CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHC------------------------CC----CCchhHHHHHHHHHH
Confidence            467999999999866   66899999999964321                        10    123466778999999


Q ss_pred             HhcCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          152 MRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       152 ~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      +.|.++         +++|..|++++.     ....+|.-+...  ..+.+.+|+.+|.+. +..|++..|..||++|+
T Consensus        54 ~~f~~~~~Y~nD~RylkiWi~ya~~~~-----~~~~if~~l~~~~IG~~~A~fY~~wA~~l-e~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   54 RKFKDDERYKNDERYLKIWIKYADLSS-----DPREIFKFLYSKGIGTKLALFYEEWAEFL-EKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTTSGGGTT-HHHHHHHHHHHTTBS-----HHHHHHHHHHHHTTSTTBHHHHHHHHHHH-HHTT-HHHHHHHHHHHH
T ss_pred             HHHhhhHhhcCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHcCCHHHHHHHHHhhC
Confidence            999775         468888887643     677888888764  455789999999999 68999999999999986

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.38  E-value=1.1e-05  Score=84.90  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=113.3

Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434          448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGK------------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS  515 (697)
Q Consensus       448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~------------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~  515 (697)
                      ..-|++.+..+|.+.+.|+.++++-...-.            .+....++++|+ ..+|++..||..|+..-.+..    
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL-~~np~~~~L~l~~l~~~~~~~----   79 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERAL-KHNPDSERLLLGYLEEGEKVW----   79 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhC----
Confidence            345788889999999999999998765422            344557899999 679999999999998776543    


Q ss_pred             CCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhhhCCCCC-----CC-----
Q 005434          516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-----HYFDKLVEIALISVAKDGGGE-----SG-----  580 (697)
Q Consensus       516 ~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-----~~~~~l~~~a~~~~~~~~~~~-----~~-----  580 (697)
                            +.+.+.+.+++++...|.  +..||..|++|...+-     ..++.+|.+++..+.......     ..     
T Consensus        80 ------~~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~  151 (321)
T PF08424_consen   80 ------DSEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEE  151 (321)
T ss_pred             ------CHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Confidence                  357788889999987765  5799999999887642     578889999988775432211     01     


Q ss_pred             --CChHHHHHHHHHHhCCHHHHHHHHHHHHhC
Q 005434          581 --FSLPSAIINLVIQKDGIQQAREMYKRFLAL  610 (697)
Q Consensus       581 --~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~  610 (697)
                        ..++..+..|+.+.|-.+.|-.+++-.++.
T Consensus       152 ~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  152 FMLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence              111233566778899999999999999985

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=0.00044  Score=75.68  Aligned_cols=257  Identities=14%  Similarity=0.138  Sum_probs=177.9

Q ss_pred             chHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhhCCC--------CHHHHHHHHHHHHHHHHHH
Q 005434          174 GRMKKVLAQVIRFHPKVPGVWIY--AAAWEFDHNLNVTAARALMQNGLRVCPT--------SEELWVEYLRMELTYLNKL  243 (697)
Q Consensus       174 ~~~~~~~~ral~~~p~~~~lW~~--~a~~e~~~~~~~~~aR~~~~r~l~~~p~--------~~~lW~~y~~~E~~~~~~~  243 (697)
                      ..+..+|++.-..+++.+  |+.  .++-.+ ..++...|+++|+..=+.-|-        |..||..==.+++.+....
T Consensus       336 ~~A~~~~~klp~h~~nt~--wvl~q~GrayF-El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  336 REALNLFEKLPSHHYNTG--WVLSQLGRAYF-ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHhhHHhcCCch--HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            468899999666667655  764  344443 257999999999999998883        3467777666666543221


Q ss_pred             HHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhh-hhhhhHHHHHHHHHHhc
Q 005434          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR-EQGLRVLQTIYSGAVEA  322 (697)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~iy~~al~~  322 (697)
                           ....         .+.+...|-.        +                    -+.+. .++-++|...|++|++-
T Consensus       413 -----Li~~---------~~~sPesWca--------~--------------------GNcfSLQkdh~~Aik~f~RAiQl  450 (638)
T KOG1126|consen  413 -----LIDT---------DPNSPESWCA--------L--------------------GNCFSLQKDHDTAIKCFKRAIQL  450 (638)
T ss_pred             -----HHhh---------CCCCcHHHHH--------h--------------------cchhhhhhHHHHHHHHHHHhhcc
Confidence                 1111         1123334432        1                    11221 12468999999999987


Q ss_pred             CCCchHHHHHHHHHHHHccccC--cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHH
Q 005434          323 LPSSFNLRQRFFEIVEATNLAQ--SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVY  400 (697)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~--~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vy  400 (697)
                      -|.-     .|.-.+.-+|...  ..+.+..-++.++...|.+...|+-++..+++             .++++.|.-.|
T Consensus       451 dp~f-----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-------------qek~e~Ae~~f  512 (638)
T KOG1126|consen  451 DPRF-----AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-------------QEKLEFAEFHF  512 (638)
T ss_pred             CCcc-----chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-------------cchhhHHHHHH
Confidence            6641     1111222233211  23567777899999999999999999999986             58899999999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH
Q 005434          401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE  480 (697)
Q Consensus       401 e~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~  480 (697)
                      ++|++..|+...-.-++.....                 ..+..++|..+|++|+..+|+++---..-+.++...+++++
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~-----------------~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQH-----------------QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHH-----------------HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            9999999987644444443332                 23567899999999999999998777777888999999999


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          481 ARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       481 A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                      |...++..- ...|+..-+...-.......+
T Consensus       576 al~~LEeLk-~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  576 ALQELEELK-ELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             HHHHHHHHH-HhCcchHHHHHHHHHHHHHHc
Confidence            999999877 788987666665555555444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=2.3e-05  Score=84.05  Aligned_cols=221  Identities=14%  Similarity=0.157  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNG-RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~-~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      +..+.-.||-|+.+.|.+.+.|....-.--.+..+ .+..++.|||.+.|++-.+=+..|--.. ..|.-..|-+.|..+
T Consensus       301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al~~L~~W  379 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQALKMLDKW  379 (579)
T ss_pred             chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence            55667788888888888888887666554444443 6788888888888888776666555554 566677788888888


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      ++.+|..  .|+                    ..+...                     -.++.    +           
T Consensus       380 i~~~p~y--~~l--------------------~~a~~~---------------------~~~~~----~-----------  401 (579)
T KOG1125|consen  380 IRNKPKY--VHL--------------------VSAGEN---------------------EDFEN----T-----------  401 (579)
T ss_pred             HHhCccc--hhc--------------------cccCcc---------------------ccccC----C-----------
Confidence            8888751  111                    100000                     00000    0           


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCC--CChhhHHHHHHhhcc
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL--VDPKYWDWLARLKMT  376 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p--~~~~~w~~~a~~~l~  376 (697)
                                            +.++++ ..   +             ..+..++-.+....|  .++++...++-++..
T Consensus       402 ----------------------~s~~~~-~~---l-------------~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l  442 (579)
T KOG1125|consen  402 ----------------------KSFLDS-SH---L-------------AHIQELFLEAARQLPTKIDPDVQSGLGVLYNL  442 (579)
T ss_pred             ----------------------cCCCCH-HH---H-------------HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence                                  000000 00   0             111122222333344  457777777666643


Q ss_pred             cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (697)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al  455 (697)
                                   .+.+++|.+.|+.||..-|++. ||..+=..+-+     .             ..-+.|...|.+|+
T Consensus       443 -------------s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-----~-------------~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  443 -------------SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-----G-------------NRSEEAISAYNRAL  491 (579)
T ss_pred             -------------chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-----C-------------cccHHHHHHHHHHH
Confidence                         4889999999999999999887 99987543321     1             22468999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      +..|.....|...+--.+..|.+++|.+.+-.||
T Consensus       492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            9999987777777766778899999988887777

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.23  E-value=0.00046  Score=66.31  Aligned_cols=191  Identities=11%  Similarity=-0.066  Sum_probs=138.1

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      .++...|+.-+++|++.+|.++..|...+..+...|..+.|.+-|++|+ ...|++.++-..|--++...|.        
T Consensus        48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~p~~GdVLNNYG~FLC~qg~--------  118 (250)
T COG3063          48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLAPNNGDVLNNYGAFLCAQGR--------  118 (250)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCccchhhhhhHHHHhCCC--------
Confidence            3568899999999999999999999999999999999999999999999 7999999999999999988774        


Q ss_pred             cchHHHHHHHHHHHhhcChhhhHHHHHH--HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434          521 ADILSIFELLKCILTKVSALESESLWLM--ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~~~~~lW~~--y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~  598 (697)
                        .+++...|++|+..-.-..-..-|.-  ++.+-....+.++..|++++..-+..      +.............|++-
T Consensus       119 --~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         119 --PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYKAGDYA  190 (250)
T ss_pred             --hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHhcccch
Confidence              78899999999873211111112211  11110111257888999999764322      122223344456789999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN  654 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~  654 (697)
                      .||..+++...-.+.+..-..--|.|+..+|      +.+.+-..=.+....+|.+
T Consensus       191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g------d~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         191 PARLYLERYQQRGGAQAESLLLGIRIAKRLG------DRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCCCc
Confidence            9999999998877777664455588999888      6555555444444555643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.20  E-value=9e-05  Score=85.14  Aligned_cols=144  Identities=13%  Similarity=0.078  Sum_probs=122.0

Q ss_pred             HHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccc
Q 005434          353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEET  431 (697)
Q Consensus       353 l~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~  431 (697)
                      +..+.++||+++.....+|+....             .+..+.|..+++.+++..|... .+..|+..+..         
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~-------------~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~---------  132 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEA-------------AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR---------  132 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHH-------------cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---------
Confidence            456778899999999999999875             5889999999999999998765 55566655543         


Q ss_pred             cCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       432 ~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                               .+.++.|+..+++++..+|.+.......+..+...|.+++|..+|++++ .++|+....|..+.......|
T Consensus       133 ---------~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~-~~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        133 ---------QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS-RQHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             ---------hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcC
Confidence                     3568899999999999999999999999999999999999999999999 689999999999998888777


Q ss_pred             ccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          512 TRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      .          .+.+...|++|++...
T Consensus       203 ~----------~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        203 A----------LWRARDVLQAGLDAIG  219 (694)
T ss_pred             C----------HHHHHHHHHHHHHhhC
Confidence            4          6888888999988653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.05  E-value=0.00011  Score=71.53  Aligned_cols=97  Identities=9%  Similarity=0.059  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALMQ  216 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~--~~~aR~~~~  216 (697)
                      .......+++++...|++.+.|......+...+ +..+...|++++...|+++.+|..++...+...|+  .+.|+.+++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~  134 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID  134 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            456677899999999999999999999988877 57899999999999999999999999854235666  599999999


Q ss_pred             HhhhhCCCCHHHHHHHHHHH
Q 005434          217 NGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       217 r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ++++..|++...+...+...
T Consensus       135 ~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370        135 KALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHHhCCCChhHHHHHHHHH
Confidence            99999999877666555433

>PLN02789 farnesyltranstransferase

Probab=98.05  E-value=0.004  Score=65.25  Aligned_cols=193  Identities=12%  Similarity=0.047  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALM  215 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~--~~~aR~~~  215 (697)
                      ..++..++..++..+|.++..|......+...+  .......+++++..+|++..+|..-.... +..|.  .+.+..++
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l-~~l~~~~~~~el~~~  131 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA-EKLGPDAANKELEFT  131 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH-HHcCchhhHHHHHHH
Confidence            458889999999999999999987777766665  35788899999999999999998765444 34554  36788999


Q ss_pred             HHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434          216 QNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (697)
Q Consensus       216 ~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (697)
                      ++++...|.+...|..-..+....+                                                       
T Consensus       132 ~kal~~dpkNy~AW~~R~w~l~~l~-------------------------------------------------------  156 (320)
T PLN02789        132 RKILSLDAKNYHAWSHRQWVLRTLG-------------------------------------------------------  156 (320)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhh-------------------------------------------------------
Confidence            9999999998888876543322111                                                       


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccc-cCc---HHHHHHHHHHHHhhCCCChhhHHHHH
Q 005434          296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-AQS---DDMHDKILSDMQRDFLVDPKYWDWLA  371 (697)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~-~~~---~~~~~~il~~~~~~~p~~~~~w~~~a  371 (697)
                                  .++.+...++++|+..|.+...|..-.-++...+. +..   .+.......+++...|++...|.++.
T Consensus       157 ------------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~  224 (320)
T PLN02789        157 ------------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR  224 (320)
T ss_pred             ------------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence                        12356677888888777777777665544433311 111   12344556688999999999999887


Q ss_pred             HhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCc
Q 005434          372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS  409 (697)
Q Consensus       372 ~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~  409 (697)
                      ....... .        ..+....|...+.++++..|.
T Consensus       225 ~ll~~~~-~--------~l~~~~~~~~~~~~~~~~~~~  253 (320)
T PLN02789        225 GLFKDDK-E--------ALVSDPEVSSVCLEVLSKDSN  253 (320)
T ss_pred             HHHhcCC-c--------ccccchhHHHHHHHhhcccCC
Confidence            7764310 0        012234477777777765444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.0037  Score=67.37  Aligned_cols=268  Identities=12%  Similarity=0.074  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (697)
Q Consensus       309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~  388 (697)
                      +.....|.+..++..|.+.+..--.+-.+-  +.++ ....-.+=-+++..+|+.+..|+..+-+++.            
T Consensus       260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~--el~~-~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~------------  324 (611)
T KOG1173|consen  260 FKECLKITEELLEKDPFHLPCLPLHIACLY--ELGK-SNKLFLLSHKLVDLYPSKALSWFAVGCYYLM------------  324 (611)
T ss_pred             HHHHHHHhHHHHhhCCCCcchHHHHHHHHH--Hhcc-cchHHHHHHHHHHhCCCCCcchhhHHHHHHH------------
Confidence            455666666666666655433222222221  2221 1222233456888999999999999999886            


Q ss_pred             cchHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCC--CcHHHH
Q 005434          389 VPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC--LTEDIA  465 (697)
Q Consensus       389 ~~~~~~~a~~vye~al~~~~~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~--~~~~lw  465 (697)
                       .++...||..|.++..-.|+ +.-|..|-...-.                  .+.-+.+...|-.|-..-|  .-|.++
T Consensus       325 -i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------------------e~EhdQAmaaY~tAarl~~G~hlP~LY  385 (611)
T KOG1173|consen  325 -IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------------------EGEHDQAMAAYFTAARLMPGCHLPSLY  385 (611)
T ss_pred             -hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh------------------cchHHHHHHHHHHHHHhccCCcchHHH
Confidence             36788899999998776665 3367766543221                  2446788889988877644  346666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hHH
Q 005434          466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SES  544 (697)
Q Consensus       466 ~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~~  544 (697)
                      +..  =+.+.++++-|.+.+..|+ ..+|.++-+-..-.-+.-          +.+...++...|++++..++... ...
T Consensus       386 lgm--ey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay----------~~~~y~~A~~~f~~~l~~ik~~~~e~~  452 (611)
T KOG1173|consen  386 LGM--EYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAY----------TYEEYPEALKYFQKALEVIKSVLNEKI  452 (611)
T ss_pred             HHH--HHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheee----------hHhhhHHHHHHHHHHHHHhhhcccccc
Confidence            532  1334678888999999999 788887544322111000          11135666667777764332211 011


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005434          545 LWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIEL  624 (697)
Q Consensus       545 lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~l  624 (697)
                      .|.-..                                  ...-.-..+.+.++.|-..|++++..+|.+...+..-+.+
T Consensus       453 ~w~p~~----------------------------------~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i  498 (611)
T KOG1173|consen  453 FWEPTL----------------------------------NNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI  498 (611)
T ss_pred             chhHHH----------------------------------HhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence            343211                                  1111112234455666666666666666666555554444


Q ss_pred             HhccCCCCCcccHHHHHHHHHHHHhhCCCCc---hHHHHHHH
Q 005434          625 ENNLASVGDKDSLVNARKLFESALATYDQNT---SLWRDYYS  663 (697)
Q Consensus       625 E~~~~~~~~~~~~~raR~lye~al~~~~~~~---~lW~~y~~  663 (697)
                      ...+|      +++.|-+-|.+++-..|.+.   ++...+++
T Consensus       499 y~llg------nld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  499 YHLLG------NLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHhc------ChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            44555      56666666666666655331   44444444

>PLN02789 farnesyltranstransferase

Probab=98.01  E-value=0.0083  Score=62.86  Aligned_cols=173  Identities=13%  Similarity=0.091  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhc
Q 005434          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA  425 (697)
Q Consensus       347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~  425 (697)
                      +.+-.+++++++..|++...|...+......            ...++.+...++++++..|... +|..- .+....+.
T Consensus        54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L------------~~~l~eeL~~~~~~i~~npknyqaW~~R-~~~l~~l~  120 (320)
T PLN02789         54 PRALDLTADVIRLNPGNYTVWHFRRLCLEAL------------DADLEEELDFAEDVAEDNPKNYQIWHHR-RWLAEKLG  120 (320)
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHc------------chhHHHHHHHHHHHHHHCCcchHHhHHH-HHHHHHcC
Confidence            5677778889999999999998877665431            1257889999999999888764 66532 22222110


Q ss_pred             CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                                     ....+.....+++++..+|.+...|..-.-.+...|.++++.+.+.+++ ...|.+...|..+..
T Consensus       121 ---------------~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~~N~sAW~~R~~  184 (320)
T PLN02789        121 ---------------PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDVRNNSAWNQRYF  184 (320)
T ss_pred             ---------------chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCchhHHHHHHH
Confidence                           1123567888999999999999999988888888999999999999999 788999999988876


Q ss_pred             HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Q 005434          506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFF  553 (697)
Q Consensus       506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~  553 (697)
                      +..+.+..+.  .+ ...++..+...++|...|...  ..|......+
T Consensus       185 vl~~~~~l~~--~~-~~~e~el~y~~~aI~~~P~N~--SaW~Yl~~ll  227 (320)
T PLN02789        185 VITRSPLLGG--LE-AMRDSELKYTIDAILANPRNE--SPWRYLRGLF  227 (320)
T ss_pred             HHHhcccccc--cc-ccHHHHHHHHHHHHHhCCCCc--CHHHHHHHHH
Confidence            5544321100  00 013445556678888877654  5576444333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0036  Score=61.05  Aligned_cols=121  Identities=21%  Similarity=0.234  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434          310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (697)
Q Consensus       310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~  389 (697)
                      +.|..+|++.++.-|.+..++.+=+-+...-+.   ...+-+-+...+..||.+++.|..+|.+++.             
T Consensus       103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK---~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-------------  166 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK---NLEAIKELNEYLDKFMNDQEAWHELAEIYLS-------------  166 (289)
T ss_pred             hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------------
Confidence            456677777777667665555444444433332   2356666788899999999999999999986             


Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT  461 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~  461 (697)
                      .+.+++|.-.||+.+-..|.+. .+..|.+..--..               ...++.-+|..|++|+..+|.+
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g---------------g~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG---------------GAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHHHhChHh
Confidence            4889999999999999999876 5556665532211               1245778999999999988854

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.97  E-value=0.056  Score=60.59  Aligned_cols=83  Identities=13%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--p~~~~lW~~~a~~e~~~~~~~~~aR~~~~  216 (697)
                      ...+...||+++.---+..+.|..+.--....+ ..++-++.+.++...  |.++...+++++.+.+..+.++.+-.+-+
T Consensus       339 f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~  418 (799)
T KOG4162|consen  339 FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQ  418 (799)
T ss_pred             HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence            344556777777666677889988877555556 468899999999999  88899999999999988899888888888


Q ss_pred             HhhhhC
Q 005434          217 NGLRVC  222 (697)
Q Consensus       217 r~l~~~  222 (697)
                      +++..+
T Consensus       419 kai~~~  424 (799)
T KOG4162|consen  419 KAISLL  424 (799)
T ss_pred             HHHHHh
Confidence            888755

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.96  E-value=0.00025  Score=65.29  Aligned_cols=98  Identities=10%  Similarity=-0.010  Sum_probs=81.3

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      .++++.|...|+.++...|... .|......+..                  .+..+.|...|++|+..+|.++..|...
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~------------------~g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM------------------LKEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            4779999999999999888753 44433333222                  4668899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV  506 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l  506 (697)
                      +..+...|++++|...+++++ ...|++...|..+...
T Consensus        99 g~~l~~~g~~~eAi~~~~~Al-~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         99 GVCLKMMGEPGLAREAFQTAI-KMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHH
Confidence            999999999999999999999 7899998888655433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.008  Score=62.42  Aligned_cols=295  Identities=13%  Similarity=0.050  Sum_probs=185.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      .++-.-...||+++.|-...++.+-..| +..+...|++++..+|.....=-.|+... ...|+.+..-++..+-+....
T Consensus       219 ~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-~~eg~~e~~~~L~~~Lf~~~~  297 (564)
T KOG1174|consen  219 FLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLL-GQEGGCEQDSALMDYLFAKVK  297 (564)
T ss_pred             HHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHH-HhccCHhhHHHHHHHHHhhhh
Confidence            4566667889999999999888877777 56788899999999998877777777777 477888888888888877764


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhh
Q 005434          224 TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDL  303 (697)
Q Consensus       224 ~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (697)
                      .+..=|.--+...  +..+. .++ .|..+.+.+..++.  +..-+                           +.....+
T Consensus       298 ~ta~~wfV~~~~l--~~~K~-~~r-AL~~~eK~I~~~~r--~~~al---------------------------ilKG~lL  344 (564)
T KOG1174|consen  298 YTASHWFVHAQLL--YDEKK-FER-ALNFVEKCIDSEPR--NHEAL---------------------------ILKGRLL  344 (564)
T ss_pred             cchhhhhhhhhhh--hhhhh-HHH-HHHHHHHHhccCcc--cchHH---------------------------HhccHHH
Confidence            4444444333221  11111 111 12222111111110  00000                           0000011


Q ss_pred             hhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH-HhhcccCCCCC
Q 005434          304 FREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVSKD  382 (697)
Q Consensus       304 ~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a-~~~l~~~~~~~  382 (697)
                      +.....+.|..-|+.|..--|...+.+.-++..|-.++   .-..+-.+-+...+.+|.+...-..++ .....+     
T Consensus       345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~---~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d-----  416 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK---RFKEANALANWTIRLFQNSARSLTLFGTLVLFPD-----  416 (564)
T ss_pred             HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC-----
Confidence            11122456778899888877888888888888887765   234555566677788888866644442 222221     


Q ss_pred             CCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc
Q 005434          383 GTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT  461 (697)
Q Consensus       383 ~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~  461 (697)
                             +..-++|...|++||+.-|.-- -...-+.++.                  ..+....+..++++++.. ..+
T Consensus       417 -------p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~------------------~Eg~~~D~i~LLe~~L~~-~~D  470 (564)
T KOG1174|consen  417 -------PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ------------------VEGPTKDIIKLLEKHLII-FPD  470 (564)
T ss_pred             -------chhHHHHHHHHHhhhccCCccHHHHHHHHHHHH------------------hhCccchHHHHHHHHHhh-ccc
Confidence                   3456899999999999887511 1111222221                  123345577888888865 445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (697)
                      ..+....++++.-.+.+++|.+-|..|+ +..|++..--.-.=.+|.
T Consensus       471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-r~dP~~~~sl~Gl~~lEK  516 (564)
T KOG1174|consen  471 VNLHNHLGDIMRAQNEPQKAMEYYYKAL-RQDPKSKRTLRGLRLLEK  516 (564)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCccchHHHHHHHHHHh
Confidence            6788888999999999999999999999 899998766544333443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.94  E-value=0.0018  Score=72.00  Aligned_cols=226  Identities=15%  Similarity=0.063  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..++|...++.....-+....+...-++++.+.|+.++|..++...+ ..+|++......+.........     .+.+
T Consensus        18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li-~rNPdn~~Yy~~L~~~~g~~~~-----~~~~   91 (517)
T PF12569_consen   18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI-DRNPDNYDYYRGLEEALGLQLQ-----LSDE   91 (517)
T ss_pred             CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHhhhcc-----cccc
Confidence            557788888877665555556666777999999999999999999999 7999998877776655422211     0111


Q ss_pred             chHHHHHHHHHHHhhcChhh--------------hHHHHHHHHHHHHhhh------------------HHHHHHHHHHHH
Q 005434          522 DILSIFELLKCILTKVSALE--------------SESLWLMALKFFMNQK------------------HYFDKLVEIALI  569 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~--------------~~~lW~~y~~~~~~~~------------------~~~~~l~~~a~~  569 (697)
                      +.+...++|.+--...|...              +...-..|+.-....+                  ..+..++.....
T Consensus        92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~  171 (517)
T PF12569_consen   92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN  171 (517)
T ss_pred             cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            35666666666544444322              1112222322222221                  012223332222


Q ss_pred             hhhhCCCC---------CCCCChHHHH--HHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHH
Q 005434          570 SVAKDGGG---------ESGFSLPSAI--INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV  638 (697)
Q Consensus       570 ~~~~~~~~---------~~~~~l~~~y--l~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~  638 (697)
                      ........         ++...+|..|  +......|++++|.+..++||...|..++++..=+.+-...|      ++.
T Consensus       172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G------~~~  245 (517)
T PF12569_consen  172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG------DLK  245 (517)
T ss_pred             hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC------CHH
Confidence            22111100         1111234333  233345678888888888888888888888877777777777      778


Q ss_pred             HHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 005434          639 NARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYW  679 (697)
Q Consensus       639 raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~  679 (697)
                      .|-...+.|-...+.+--+=...+..-.+.|..+.|..+..
T Consensus       246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            88888888887766666666666777777888887777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.91  E-value=0.021  Score=58.00  Aligned_cols=311  Identities=14%  Similarity=0.049  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ..-+..-|..|+.-.|+++.....-+......| ..-+..-+.|.|.+.|+-...-+.-+...+ .+|.++.|-.=|+..
T Consensus        54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll-K~Gele~A~~DF~~v  132 (504)
T KOG0624|consen   54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL-KQGELEQAEADFDQV  132 (504)
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh-hcccHHHHHHHHHHH
Confidence            344667888999999999888777776666656 345677899999999998888888888887 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      |...|.....-..+-++++...... .|..+.                 .|.                            
T Consensus       133 l~~~~s~~~~~eaqskl~~~~e~~~-l~~ql~-----------------s~~----------------------------  166 (504)
T KOG0624|consen  133 LQHEPSNGLVLEAQSKLALIQEHWV-LVQQLK-----------------SAS----------------------------  166 (504)
T ss_pred             HhcCCCcchhHHHHHHHHhHHHHHH-HHHHHH-----------------HHh----------------------------
Confidence            9999976655555655554321111 000000                 000                            


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                            ..++...|.......++..|-+..++..-.+.|..-+   ....+.+=+..+.+.-.++.+..+..++++..  
T Consensus       167 ------~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~---e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~--  235 (504)
T KOG0624|consen  167 ------GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG---EPKKAIHDLKQASKLSQDNTEGHYKISQLLYT--  235 (504)
T ss_pred             ------cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC---cHHHHHHHHHHHHhccccchHHHHHHHHHHHh--
Confidence                  0112345566666777777777666655545444322   23344444555555566777778888887765  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHH--HHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL--MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al  455 (697)
                                 .+..+.+....+++|+-.|..+ -|..|-++-  .+.+.. .+.       ...++....+.+.++..+
T Consensus       236 -----------vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les-~e~-------~ie~~~~t~cle~ge~vl  296 (504)
T KOG0624|consen  236 -----------VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES-AEQ-------AIEEKHWTECLEAGEKVL  296 (504)
T ss_pred             -----------hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH-HHH-------HHhhhhHHHHHHHHHHHH
Confidence                       4778888889999999988876 344443321  111100 000       012355677888999988


Q ss_pred             HcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434          456 AMGCLTEDI----AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (697)
Q Consensus       456 ~~~~~~~~l----w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~  531 (697)
                      ..+|..+.+    ..-........+++-+|.+.+.+++ ...|+++.+...+++-.+-..          ..+.+..-|+
T Consensus       297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE----------~YD~AI~dye  365 (504)
T KOG0624|consen  297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDE----------MYDDAIHDYE  365 (504)
T ss_pred             hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhH----------HHHHHHHHHH
Confidence            888874332    2222334445688999999999999 788999999998887665322          4677777788


Q ss_pred             HHHhhcC
Q 005434          532 CILTKVS  538 (697)
Q Consensus       532 ~al~~~p  538 (697)
                      +|+..-+
T Consensus       366 ~A~e~n~  372 (504)
T KOG0624|consen  366 KALELNE  372 (504)
T ss_pred             HHHhcCc
Confidence            8876443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.034  Score=57.92  Aligned_cols=287  Identities=11%  Similarity=0.007  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHh
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDMI  424 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~-~lw~~yi~~~~~~~  424 (697)
                      ...+-.++-...+.+|++..+...+|+.+..             .|....|...|+++....|.. +--+.|.-++....
T Consensus       214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~-------------~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg  280 (564)
T KOG1174|consen  214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYY-------------NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG  280 (564)
T ss_pred             hhhhHHHHHHhhccCCccHHHHHHHhhhhhh-------------hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence            3444445556677899999988888988865             366778889999987766643 23355554433211


Q ss_pred             cCCcccccC-----C------------CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          425 APKKEETRD-----S------------ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (697)
Q Consensus       425 ~~~~~~~~~-----~------------~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~  487 (697)
                      .-. .+..+     +            .-.....+..++|...-+++|..+|.+...++.-..++...|++++|.-.++.
T Consensus       281 ~~e-~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~  359 (564)
T KOG1174|consen  281 GCE-QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT  359 (564)
T ss_pred             CHh-hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence            000 00000     0            00001234455666666666666666666666666666666666666555555


Q ss_pred             HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhhh-HHHHHHHH
Q 005434          488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SESLWLMALKFFMNQK-HYFDKLVE  565 (697)
Q Consensus       488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~~lW~~y~~~~~~~~-~~~~~l~~  565 (697)
                      |. .--|...+.+.-.+.-.+..+.          +.++.-+-..+++..|.+. +..|.-.-+-++...+ +++.++++
T Consensus       360 Aq-~Lap~rL~~Y~GL~hsYLA~~~----------~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e  428 (564)
T KOG1174|consen  360 AQ-MLAPYRLEIYRGLFHSYLAQKR----------FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE  428 (564)
T ss_pred             HH-hcchhhHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence            55 4445555555555544444332          3333333334444443321 2222110111111111 45566666


Q ss_pred             HHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434          566 IALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFE  645 (697)
Q Consensus       566 ~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye  645 (697)
                      +++..-+.      -..-....++.....|..+.+-++.++.+...| ++.+.....++-..+.      ++..+-+.|.
T Consensus       429 k~L~~~P~------Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~N------e~Q~am~~y~  495 (564)
T KOG1174|consen  429 KSLKINPI------YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQN------EPQKAMEYYY  495 (564)
T ss_pred             hhhccCCc------cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhh------hHHHHHHHHH
Confidence            65532110      000011223334445666666666666666543 3445555555555444      5566666666


Q ss_pred             HHHhhCCCCchHHHHHHHHHHhcCC
Q 005434          646 SALATYDQNTSLWRDYYSTETKLGT  670 (697)
Q Consensus       646 ~al~~~~~~~~lW~~y~~fE~~~G~  670 (697)
                      .|+..+|.+...-.-.-.+|....+
T Consensus       496 ~ALr~dP~~~~sl~Gl~~lEK~~~~  520 (564)
T KOG1174|consen  496 KALRQDPKSKRTLRGLRLLEKSDDE  520 (564)
T ss_pred             HHHhcCccchHHHHHHHHHHhccCC
Confidence            6666666555444444445544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.90  E-value=0.00024  Score=65.45  Aligned_cols=95  Identities=8%  Similarity=-0.069  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.+...|...+..+...| +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~A  118 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK-MMGEPGLAREAFQTA  118 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            456778999999999999999999999998887 678999999999999999999999999875 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRM  235 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~  235 (697)
                      ++..|++...|......
T Consensus       119 l~~~p~~~~~~~~~~~~  135 (144)
T PRK15359        119 IKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHhCCCChHHHHHHHHH
Confidence            99999988888555443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.88  E-value=1.8e-05  Score=78.41  Aligned_cols=84  Identities=17%  Similarity=0.292  Sum_probs=73.2

Q ss_pred             CCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHH
Q 005434          580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWR  659 (697)
Q Consensus       580 ~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~  659 (697)
                      .+.+|..|+.++...+.+...-.||..++...|.+.++|..++++|.....     +++.+|++|.+++..++.+|.+|.
T Consensus       106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-----ni~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-----NIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-----cHHHHHHHHHhhhccCCCCchHHH
Confidence            456677777777777778888899999999999999999999999876542     899999999999999999999999


Q ss_pred             HHHHHHHhc
Q 005434          660 DYYSTETKL  668 (697)
Q Consensus       660 ~y~~fE~~~  668 (697)
                      .|..||..+
T Consensus       181 eyfr~El~y  189 (435)
T COG5191         181 EYFRMELMY  189 (435)
T ss_pred             HHHHHHHHH
Confidence            999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.85  E-value=0.079  Score=58.37  Aligned_cols=100  Identities=10%  Similarity=0.094  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      +.+...-.++++-.+.+.--|.-|.-+-+..+ +..+.+.|.+||...|++.++|-..+..-. +.++++.....=.+-|
T Consensus        58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LL  136 (700)
T KOG1156|consen   58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLL  136 (700)
T ss_pred             HHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHH
Confidence            45556677888888999999998888766655 778999999999999999999999988885 7899999998889999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHH
Q 005434          220 RVCPTSEELWVEYLRMELTYLN  241 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~  241 (697)
                      +..|....-|..|+.--...++
T Consensus       137 ql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen  137 QLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHH
Confidence            9999888999998865443333

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=97.84  E-value=0.00017  Score=63.70  Aligned_cols=109  Identities=17%  Similarity=0.268  Sum_probs=79.5

Q ss_pred             HhhHHHHHHHhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 005434           76 KQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVM  152 (697)
Q Consensus        76 ~kR~~fE~~l~r---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~  152 (697)
                      ..|+.||..|.+   ....+..|++||.|=.+..                        . +.   +....+..+++||++
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~------------------------p-~g---~~~s~L~~lLerc~~   54 (125)
T smart00777        3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENY------------------------P-QG---GKESGLLTLLERCIR   54 (125)
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhC------------------------C-CC---CchhhHHHHHHHHHH
Confidence            468999999953   3345799999999943210                        1 00   123567789999998


Q ss_pred             hcCC---------CHHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          153 RFKG---------DIELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       153 ~~p~---------~~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      .|-+         -+++|+.|+++|.     ..+.+|.-+...  -...+.+|+.+|.+. +..|++..|..+|++|
T Consensus        55 ~f~~~~~YknD~RyLkiWi~ya~~~~-----dp~~if~~L~~~~IG~~~AlfYe~~A~~l-E~~g~~~~A~~iy~~G  125 (125)
T smart00777       55 YFEDDERYKNDPRYLKIWLKYADNCD-----EPRELFQFLYSKGIGTKLALFYEEWAQLL-EAAGRYKKADEVYQLG  125 (125)
T ss_pred             HhhhhhhhcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHcc
Confidence            8633         3589999999873     346677766553  234678999999998 6999999999999876

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.83  E-value=0.0063  Score=71.08  Aligned_cols=144  Identities=10%  Similarity=0.048  Sum_probs=83.1

Q ss_pred             CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHH
Q 005434          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA  403 (697)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~a  403 (697)
                      |+.++.|..++..+...+   ..+.+..+++..++.+|+....|+..+-++...             +..+.+..+  .+
T Consensus        28 p~n~~a~~~Li~~~~~~~---~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-------------~~~~~~~lv--~~   89 (906)
T PRK14720         28 LSKFKELDDLIDAYKSEN---LTDEAKDICEEHLKEHKKSISALYISGILSLSR-------------RPLNDSNLL--NL   89 (906)
T ss_pred             cchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-------------cchhhhhhh--hh
Confidence            667788888888775443   357888889999999999999999988877652             334444444  55


Q ss_pred             hhcCCchhHH---HHHHHHHHHHhcCCcccccCCC--CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH
Q 005434          404 LKNVPSSMIF---DLYTKFLMDMIAPKKEETRDSE--LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL  478 (697)
Q Consensus       404 l~~~~~~~lw---~~yi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~  478 (697)
                      ++..+...=|   ..|.......+..   ...+..  .+-...+..+++..+|++++..+|.++.+--.|+.++... ++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~---k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGEN---KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhh---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence            5555443212   1111111110000   000000  0000113455666777777777777766666666666666 67


Q ss_pred             HHHHHHHHHHh
Q 005434          479 DEARKLAAKLC  489 (697)
Q Consensus       479 ~~A~~l~~~al  489 (697)
                      ++|.+++.+|+
T Consensus       166 ~KA~~m~~KAV  176 (906)
T PRK14720        166 EKAITYLKKAI  176 (906)
T ss_pred             HHHHHHHHHHH
Confidence            77777666666

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.82  E-value=0.07  Score=56.97  Aligned_cols=114  Identities=12%  Similarity=-0.005  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCC
Q 005434          349 HDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPK  427 (697)
Q Consensus       349 ~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~  427 (697)
                      +..++......+|........++.....             .|+++.|...++++++..|... .+.........     
T Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~-------------~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-----  160 (355)
T cd05804          99 VARVLPLWAPENPDYWYLLGMLAFGLEE-------------AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-----  160 (355)
T ss_pred             HHHHHhccCcCCCCcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----
Confidence            3333333333445544444555555543             4778999999999999888764 33333322221     


Q ss_pred             cccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005434          428 KEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS  494 (697)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P  494 (697)
                                   .+..+.+...|++++...|.++    ..|...+.++...|++++|..++++++ ...|
T Consensus       161 -------------~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~-~~~~  217 (355)
T cd05804         161 -------------QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI-APSA  217 (355)
T ss_pred             -------------cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cccc
Confidence                         3557889999999998765432    357788999999999999999999987 4444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.80  E-value=0.00031  Score=63.69  Aligned_cols=90  Identities=10%  Similarity=0.005  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      ..|++++...|++...-..++......+ ...+...|++++..+|.++.+|...+.... ..|+.+.|..++++++...|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC
Confidence            4688999999999887777777777666 568899999999999999999999999886 78999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 005434          224 TSEELWVEYLRM  235 (697)
Q Consensus       224 ~~~~lW~~y~~~  235 (697)
                      ++...|.....+
T Consensus        83 ~~~~~~~~la~~   94 (135)
T TIGR02552        83 DDPRPYFHAAEC   94 (135)
T ss_pred             CChHHHHHHHHH
Confidence            988887665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.0047  Score=60.29  Aligned_cols=155  Identities=14%  Similarity=0.084  Sum_probs=119.0

Q ss_pred             cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHH
Q 005434          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM  423 (697)
Q Consensus       345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~  423 (697)
                      ...+++..++.+...||.++.+-...|.+..-             .+..+.|.++|+.-|...|++. ++..=+.....+
T Consensus        67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-------------~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~  133 (289)
T KOG3060|consen   67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-------------TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ  133 (289)
T ss_pred             chHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-------------hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence            45789999999999999999887777776532             4788999999999999999875 433333333322


Q ss_pred             hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR  503 (697)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (697)
                      .                 +.+ .|..-...-++.-+.+.+.|...++++...|++++|---++..+ =..|.++....++
T Consensus       134 G-----------------K~l-~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-l~~P~n~l~f~rl  194 (289)
T KOG3060|consen  134 G-----------------KNL-EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-LIQPFNPLYFQRL  194 (289)
T ss_pred             C-----------------CcH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-HcCCCcHHHHHHH
Confidence            1                 112 34444444566668899999999999999999999998899888 6789999999999


Q ss_pred             HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       504 i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      .++.-..|.       -++++..++.|.+|++..|
T Consensus       195 ae~~Yt~gg-------~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  195 AEVLYTQGG-------AENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHhh-------HHHHHHHHHHHHHHHHhCh
Confidence            887765543       1257889999999998776

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.77  E-value=0.00051  Score=66.89  Aligned_cols=120  Identities=15%  Similarity=0.138  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhc
Q 005434          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA  425 (697)
Q Consensus       347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~  425 (697)
                      +.....++..++..|+++..|..+++.+..             .++++.|...|++++...|... ++..|........ 
T Consensus        56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-------------~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~-  121 (198)
T PRK10370         56 EAQLQALQDKIRANPQNSEQWALLGEYYLW-------------RNDYDNALLAYRQALQLRGENAELYAALATVLYYQA-  121 (198)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Confidence            344455778888999999999999999975             4889999999999999998765 6766665321110 


Q ss_pred             CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005434          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (697)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (697)
                         +           ....+.++.++++++..+|.+...+...+..+...|++++|...+++++ ...|.
T Consensus       122 ---g-----------~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL-~l~~~  176 (198)
T PRK10370        122 ---G-----------QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL-DLNSP  176 (198)
T ss_pred             ---C-----------CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence               0           0114789999999999999999999999999999999999999999999 55554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.0012  Score=66.21  Aligned_cols=220  Identities=12%  Similarity=0.043  Sum_probs=154.6

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +...+|-..++.+++..| .++.+....+.+.+.++++.|..++..++ ..+|.++.+-..-..+.+..++         
T Consensus       237 gm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl-d~fP~~VT~l~g~ARi~eam~~---------  305 (478)
T KOG1129|consen  237 GMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL-DSFPFDVTYLLGQARIHEAMEQ---------  305 (478)
T ss_pred             cChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh-hcCCchhhhhhhhHHHHHHHHh---------
Confidence            445677888888888744 57778888899999999999999999999 7999998887766666555543         


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKF-FMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA  600 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~-~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~A  600 (697)
                       .+.+.++|..+++.-|... ..|=.....| +..+.+.+-..|.+.++.-.      ..+.++...----.-.+.++-+
T Consensus       306 -~~~a~~lYk~vlk~~~~nv-EaiAcia~~yfY~~~PE~AlryYRRiLqmG~------~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  306 -QEDALQLYKLVLKLHPINV-EAIACIAVGYFYDNNPEMALRYYRRILQMGA------QSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             -HHHHHHHHHHHHhcCCccc-eeeeeeeeccccCCChHHHHHHHHHHHHhcC------CChHHHhhHHHHHHhhcchhhh
Confidence             5778888999988654321 0000001122 23334555555666554311      1344544322112235678899


Q ss_pred             HHHHHHHHhCCC---CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHH
Q 005434          601 REMYKRFLALPR---PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAV  677 (697)
Q Consensus       601 R~iy~~~i~~~p---~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~v  677 (697)
                      ..-|++++....   ...++|-..-.+-...|      +++-|..+|..|+..++.+.+-.....-++.+.|+++.|+.+
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG------D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl  451 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIG------DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL  451 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEecc------chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence            999999998533   22346655444444455      899999999999999888889999999999999999999999


Q ss_pred             HHHHHhhcC
Q 005434          678 YWRARKTLK  686 (697)
Q Consensus       678 y~ral~~~~  686 (697)
                      +.-|....|
T Consensus       452 l~~A~s~~P  460 (478)
T KOG1129|consen  452 LNAAKSVMP  460 (478)
T ss_pred             HHHhhhhCc
Confidence            999977665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.72  E-value=0.0012  Score=59.85  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++..+|++...|...+......+ +..+...|++++..+|+++..|...+.... ..|+.+.|...|+++
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL-ALGEPESALKALDLA  111 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            455678899999999999999999999887766 678899999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHH
Q 005434          219 LRVCPTSEELWVEY  232 (697)
Q Consensus       219 l~~~p~~~~lW~~y  232 (697)
                      ++..|++...+...
T Consensus       112 l~~~p~~~~~~~~~  125 (135)
T TIGR02552       112 IEICGENPEYSELK  125 (135)
T ss_pred             HHhccccchHHHHH
Confidence            99999876655433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.67  E-value=0.013  Score=64.54  Aligned_cols=231  Identities=17%  Similarity=0.197  Sum_probs=129.5

Q ss_pred             chHHHHHHHHHHHHhhcC--------Cchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc---
Q 005434          390 PSQMQKAIQVYEEALKNV--------PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---  457 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~--------~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~---  457 (697)
                      .+++++|...++.|+..+        |... +-..+..+...                  .+....|..+|++|+..   
T Consensus       212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~------------------~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS------------------LGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHHHHH
Confidence            588999999999999873        2111 22223333222                  34567888888888874   


Q ss_pred             --CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHH
Q 005434          458 --GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (697)
Q Consensus       458 --~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~  532 (697)
                        ++.+   .....+.+.++...|.+++|...+++|+        +|...      ..+.         ...++-..+-.
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al--------~I~~~------~~~~---------~~~~v~~~l~~  330 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL--------EIYEK------LLGA---------SHPEVAAQLSE  330 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH--------HHHHH------hhcc---------ChHHHHHHHHH
Confidence              3333   4567777788889999999999999988        22222      0111         01111000000


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHH
Q 005434          533 ILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFL  608 (697)
Q Consensus       533 al~~~p~~~~~~lW~~y~~~~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i  608 (697)
                      .               .+.+..... +.+..++++++.......+ +..+.+...|   ...+...|.+++|+++|++||
T Consensus       331 ~---------------~~~~~~~~~~Eea~~l~q~al~i~~~~~g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  331 L---------------AAILQSMNEYEEAKKLLQKALKIYLDAPG-EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI  394 (508)
T ss_pred             H---------------HHHHHHhcchhHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            0               000000000 2333344444443321111 1122344444   444667899999999999999


Q ss_pred             hCC----C-----CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC---C-CCc---hHHHHHHHHHHhcCChh
Q 005434          609 ALP----R-----PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---D-QNT---SLWRDYYSTETKLGTSE  672 (697)
Q Consensus       609 ~~~----p-----~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~---~-~~~---~lW~~y~~fE~~~G~~~  672 (697)
                      ...    .     ....+|..-.+. ...+      .+..|-.+|+.+....   | .++   .....-+..=...|+.+
T Consensus       395 ~~~~~~~~~~~~~~~~~l~~la~~~-~~~k------~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e  467 (508)
T KOG1840|consen  395 QILRELLGKKDYGVGKPLNQLAEAY-EELK------KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE  467 (508)
T ss_pred             HHHHhcccCcChhhhHHHHHHHHHH-HHhc------ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence            753    1     123445444444 2333      4566666776665432   3 344   45555555667789999


Q ss_pred             hHHHHHHHHHhh
Q 005434          673 TATAVYWRARKT  684 (697)
Q Consensus       673 ~a~~vy~ral~~  684 (697)
                      .|.++.+++++.
T Consensus       468 ~a~~~~~~~~~~  479 (508)
T KOG1840|consen  468 AAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=97.60  E-value=8.7e-05  Score=47.63  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             cHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh
Q 005434          636 SLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (697)
Q Consensus       636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~~  667 (697)
                      +++|||.|||+.+... .++..|+.|+.||.+
T Consensus         2 E~dRAR~IyeR~v~~h-p~~k~WikyAkFEe~   32 (32)
T PF02184_consen    2 EFDRARSIYERFVLVH-PEVKNWIKYAKFEER   32 (32)
T ss_pred             hHHHHHHHHHHHHHhC-CCchHHHHHHHhhcC
Confidence            6789999999999865 468899999999863

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.58  E-value=0.0066  Score=60.81  Aligned_cols=170  Identities=12%  Similarity=0.113  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-------c
Q 005434          140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG---VWIYAAAWEFDH-------N  205 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~---lW~~~a~~e~~~-------~  205 (697)
                      ...+...|++++..+|++.   ..|...+......+ ...+...|++++..+|+++.   .|...+......       .
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~  128 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQ  128 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCH
Confidence            4567789999999999876   45666666656656 57899999999999998775   455544444321       2


Q ss_pred             CCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCC
Q 005434          206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVE  285 (697)
Q Consensus       206 ~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  285 (697)
                      |+.+.|...|+++++.+|++...|..+..+......... ....+                                   
T Consensus       129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~-~~~~~-----------------------------------  172 (235)
T TIGR03302       129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAG-KELYV-----------------------------------  172 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHH-HHHHH-----------------------------------
Confidence            678899999999999999988777666554322111000 00000                                   


Q ss_pred             CCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCC
Q 005434          286 NTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLV  362 (697)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~  362 (697)
                                    ..-.+..++...|...|+.+++..|++.   +.+..+...+...+   ..+.+..+++.+...||+
T Consensus       173 --------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg---~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       173 --------------ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG---LKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             --------------HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC
Confidence                          0001122346788899999999887643   44555555554433   346677788888888874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.56  E-value=0.007  Score=60.62  Aligned_cols=181  Identities=14%  Similarity=0.036  Sum_probs=114.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHhcCCCchH---HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChh---hHHHHHHhhc
Q 005434          302 DLFREQGLRVLQTIYSGAVEALPSSFN---LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKM  375 (697)
Q Consensus       302 ~~~~~~~~~~a~~iy~~al~~~p~~~~---~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~---~w~~~a~~~l  375 (697)
                      ..+..++++.|...|+.+++..|++..   .+...-..+..  . ...+.+...++++++.+|+++.   .|..++..+.
T Consensus        42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~--~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~  118 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK--S-GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY  118 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh--c-CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence            344455678999999999998887653   22333222222  2 3468899999999999998876   4666666554


Q ss_pred             ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHH--HHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (697)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye  452 (697)
                      .....     .....+..+.|...|++++...|... .+..+.....  .........  +- -.....+....+...|+
T Consensus       119 ~~~~~-----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~--~a-~~~~~~g~~~~A~~~~~  190 (235)
T TIGR03302       119 NQIDR-----VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELY--VA-RFYLKRGAYVAAINRFE  190 (235)
T ss_pred             Hhccc-----ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHcCChHHHHHHHH
Confidence            31000     00113678999999999999988764 3332221110  000000000  00 00012355778889999


Q ss_pred             HHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005434          453 KAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS  494 (697)
Q Consensus       453 ~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P  494 (697)
                      +++...|.+   ++.|...+..+...|++++|..+++... ..+|
T Consensus       191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~-~~~~  234 (235)
T TIGR03302       191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG-ANYP  234 (235)
T ss_pred             HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCC
Confidence            999886653   5788889999999999999998887776 5555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.55  E-value=0.047  Score=60.87  Aligned_cols=260  Identities=13%  Similarity=0.066  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          391 SQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      |.+++|.+.++..-+.+.+.. +...-+.+...                  .+..+.|..+|...+..||.+..-+..+.
T Consensus        18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k------------------Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~   79 (517)
T PF12569_consen   18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLK------------------LGRKEEAEKIYRELIDRNPDNYDYYRGLE   79 (517)
T ss_pred             CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            667778887777666665543 22222222222                  24467788888888888888877776666


Q ss_pred             HHHHhc-----CCHHHHHHHHHHHhhccCCCc------------HHHHHHHHHHHHHhcccCCCCCC-----------cc
Q 005434          470 TLYLQL-----GKLDEARKLAAKLCSGKLSDS------------VQLWLLRISVEIRCVTRNSFSPS-----------KA  521 (697)
Q Consensus       470 ~l~~~~-----~~~~~A~~l~~~al~~~~P~~------------~~lW~~~i~l~~~~~~~~~~~~~-----------~~  521 (697)
                      ....-.     ++.+....+|+..- ..+|.+            .+-+...++-.+... +.-++|+           ..
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~y~~l~-~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~-l~KgvPslF~~lk~Ly~d~~  157 (517)
T PF12569_consen   80 EALGLQLQLSDEDVEKLLELYDELA-EKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ-LRKGVPSLFSNLKPLYKDPE  157 (517)
T ss_pred             HHHhhhcccccccHHHHHHHHHHHH-HhCccccchhHhhcccCCHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHcChh
Confidence            655221     24555666777655 566653            122222222222110 0112221           00


Q ss_pred             chHHHHHHHHHHHhhc------Chhh-------hHHHHHHH--HHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChH
Q 005434          522 DILSIFELLKCILTKV------SALE-------SESLWLMA--LKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP  584 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~------p~~~-------~~~lW~~y--~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~  584 (697)
                      ...-+.++++.-+...      +..+       +..+|..|  ++.+...+  +.+-...++|+..         .+++.
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---------tPt~~  228 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---------TPTLV  228 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------CCCcH
Confidence            1122223333332221      1112       23488766  44444444  4566667777642         56777


Q ss_pred             HHHHHH---HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHH-H
Q 005434          585 SAIINL---VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLW-R  659 (697)
Q Consensus       585 ~~yl~~---~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW-~  659 (697)
                      ..|+..   +...|++.+|-..++.|..+.+.+..+-.+++..-...+      .++.|.++.-.-..... ...++. +
T Consensus       229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~------~~e~A~~~~~~Ftr~~~~~~~~L~~m  302 (517)
T PF12569_consen  229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG------RIEEAEKTASLFTREDVDPLSNLNDM  302 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC------CHHHHHHHHHhhcCCCCCcccCHHHH
Confidence            777655   567899999999999999998888888888888888887      88999988776665442 122444 4


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          660 DYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       660 ~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      ..+-||.+.|..=.-..-|-+|++.+
T Consensus       303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~  328 (517)
T PF12569_consen  303 QCMWFETECAEAYLRQGDYGLALKRF  328 (517)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            56667877777666666677887765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.55  E-value=0.0044  Score=71.47  Aligned_cols=146  Identities=12%  Similarity=-0.006  Sum_probs=113.2

Q ss_pred             CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (697)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~  402 (697)
                      .|.+.+....+.++..+.+   ..+.+..+++.+.+..|++...+..+|.....             .+.+++|+..+++
T Consensus        82 ~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------------~~~~eeA~~~~~~  145 (694)
T PRK15179         82 YPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------------QQGIEAGRAEIEL  145 (694)
T ss_pred             ccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------------hccHHHHHHHHHH
Confidence            3555566666666665554   35789999999999999999999999888754             5789999999999


Q ss_pred             HhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHH
Q 005434          403 ALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEA  481 (697)
Q Consensus       403 al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A  481 (697)
                      ++...|+.. ........+..                  .+..+.|..+|++++..+|..++.|..|+..++..|+.++|
T Consensus       146 ~l~~~p~~~~~~~~~a~~l~~------------------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        146 YFSGGSSSAREILLEAKSWDE------------------IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HhhcCCCCHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            999999864 22223333332                  35678999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHH
Q 005434          482 RKLAAKLCSGKLSDSVQLWLLR  503 (697)
Q Consensus       482 ~~l~~~al~~~~P~~~~lW~~~  503 (697)
                      ...|++|+...-|.+ +-+..+
T Consensus       208 ~~~~~~a~~~~~~~~-~~~~~~  228 (694)
T PRK15179        208 RDVLQAGLDAIGDGA-RKLTRR  228 (694)
T ss_pred             HHHHHHHHHhhCcch-HHHHHH
Confidence            999999994444443 433333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.0087  Score=60.32  Aligned_cols=222  Identities=11%  Similarity=0.085  Sum_probs=155.8

Q ss_pred             Hhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005434          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (697)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~  248 (697)
                      ..| ..++.+-|+.+|...|. |+-.+..++... .......|-.+|..||...|.+...-..-+++....+        
T Consensus       235 rLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~--------  304 (478)
T KOG1129|consen  235 RLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME--------  304 (478)
T ss_pred             HhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH--------
Confidence            446 46789999999999886 666777777664 6778899999999999999986554444443322111        


Q ss_pred             HhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH
Q 005434          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (697)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~  328 (697)
                                                                                 ..+.|..+|+.+++..|.+++
T Consensus       305 -----------------------------------------------------------~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  305 -----------------------------------------------------------QQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             -----------------------------------------------------------hHHHHHHHHHHHHhcCCccce
Confidence                                                                       234567778888877776654


Q ss_pred             HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (697)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~  408 (697)
                      ...-.   -..+-..+.++++-..+..+++.--.+|++++.++--.+-             -+.++.+...|++|+....
T Consensus       326 aiAci---a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-------------aqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  326 AIACI---AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-------------AQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             eeeee---eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-------------hcchhhhHHHHHHHHhhcc
Confidence            21100   0001112467888888888888888888888766655442             2568888899999988754


Q ss_pred             chh----HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005434          409 SSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL  484 (697)
Q Consensus       409 ~~~----lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l  484 (697)
                      .+.    +|-..     ..++..             -++...|..-|.-|+..++.+.+.....+-+..+.|+++.|+.+
T Consensus       390 ~~~~aaDvWYNl-----g~vaV~-------------iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl  451 (478)
T KOG1129|consen  390 QPGQAADVWYNL-----GFVAVT-------------IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL  451 (478)
T ss_pred             Ccchhhhhhhcc-----ceeEEe-------------ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence            321    55421     111111             24567788889999999999999999999999999999999999


Q ss_pred             HHHHhhccCCC
Q 005434          485 AAKLCSGKLSD  495 (697)
Q Consensus       485 ~~~al~~~~P~  495 (697)
                      +..|. ...|+
T Consensus       452 l~~A~-s~~P~  461 (478)
T KOG1129|consen  452 LNAAK-SVMPD  461 (478)
T ss_pred             HHHhh-hhCcc
Confidence            99888 56776

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.53  E-value=0.013  Score=62.65  Aligned_cols=202  Identities=15%  Similarity=-0.009  Sum_probs=117.4

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      +|.++..+...+.++...|+.+.+...+.++. ...|.+   .+............+          +.+++.+.+++++
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~a~~~~~~g----------~~~~A~~~~~~~l   70 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAA-QALAARATERERAHVEALSAWIAG----------DLPKALALLEQLL   70 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence            46666666677777777777777766666666 444433   333333232222222          4677778888888


Q ss_pred             hhcChhhhHHHHHH-HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhC
Q 005434          535 TKVSALESESLWLM-ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLAL  610 (697)
Q Consensus       535 ~~~p~~~~~~lW~~-y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~  610 (697)
                      ...|...  ..|.. +..+.............+++....+.     .+.....   ........|.+++|...+++++..
T Consensus        71 ~~~P~~~--~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  143 (355)
T cd05804          71 DDYPRDL--LALKLHLGAFGLGDFSGMRDHVARVLPLWAPE-----NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL  143 (355)
T ss_pred             HHCCCcH--HHHHHhHHHHHhcccccCchhHHHHHhccCcC-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7766432  22321 11111111100011111222111111     1221111   222345678888888888888888


Q ss_pred             CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434          611 PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKLGTSETATAVYWRARK  683 (697)
Q Consensus       611 ~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~----~lW~~y~~fE~~~G~~~~a~~vy~ral~  683 (697)
                      .|.+...+...+.+....+      ..+.+..+|++++...+.++    ..|...+.+....|+.+.|..+|++++.
T Consensus       144 ~p~~~~~~~~la~i~~~~g------~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         144 NPDDAWAVHAVAHVLEMQG------RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             CCCCcHHHHHHHHHHHHcC------CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            8887766666666666666      78888888888888765332    3566778888888888888888888753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.51  E-value=0.00042  Score=54.49  Aligned_cols=61  Identities=15%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~  234 (697)
                      +..+...|++++..+|+++.+|+.++...+ ..|+++.|+.++++.+...|+++.+|....+
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            567899999999999999999999999997 7899999999999999999987777776654

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.48  E-value=0.00045  Score=54.29  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                      .+..+.|...|++++..+|.+.+++..++.++...|++++|..++++++ ...|++..+|....+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL-KQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH-GGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999999999 789998877766543

...

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=97.47  E-value=0.0017  Score=58.08  Aligned_cols=114  Identities=13%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhccCC---CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-------hHHHHHHH
Q 005434          480 EARKLAAKLCSGKLS---DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-------SESLWLMA  549 (697)
Q Consensus       480 ~A~~l~~~al~~~~P---~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-------~~~lW~~y  549 (697)
                      +.++.++..+ ....   +..++|..||.........      .+....+..++++|+..+....       ..++|+.|
T Consensus         3 ~~r~~~e~~i-~~~~~~dDPL~~w~~yI~w~~~~~p~------~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y   75 (126)
T PF08311_consen    3 QQRQEFEEQI-RSYEEGDDPLDPWLRYIKWIEENYPS------GGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY   75 (126)
T ss_dssp             HHHHHHHHHH-HCCGGSS-CHHHHHHHHHHHHHHCTT------CCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHCCC------CCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH
Confidence            3455666666 3333   5689999999877765321      1124667788999998764422       57899999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005434          550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL  608 (697)
Q Consensus       550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i  608 (697)
                      +++..    ....+|+.+...   .++ .....++..|+.++...|++++|.+||+.+|
T Consensus        76 a~~~~----~~~~if~~l~~~---~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   76 ADLSS----DPREIFKFLYSK---GIG-TKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HTTBS----HHHHHHHHHHHH---TTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHcc----CHHHHHHHHHHc---Ccc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            87544    455566655432   221 1133334444555667899999999999886

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.11  Score=54.48  Aligned_cols=201  Identities=14%  Similarity=0.111  Sum_probs=132.5

Q ss_pred             chHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                      .|.+++|...|++||....+-  .++.-=+..+                   ..+.++.+...|=+.+..-..+.++..+
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e-------------------~~~~ldeald~f~klh~il~nn~evl~q  563 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-------------------ALGNLDEALDCFLKLHAILLNNAEVLVQ  563 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-------------------HhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            578999999999999765431  1433222211                   2356778877777765544557888889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~  547 (697)
                      .+.++....+..+|.+++.++. ...|+++.+.....++.-+.|.          ...+++.+-....-+|..--.--|+
T Consensus       564 ianiye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegd----------ksqafq~~ydsyryfp~nie~iewl  632 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGD----------KSQAFQCHYDSYRYFPCNIETIEWL  632 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccc----------hhhhhhhhhhcccccCcchHHHHHH
Confidence            9999999999999999999998 7899999999998888876663          3556555555555555432223354


Q ss_pred             HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH-HHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005434          548 MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI-INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIEL  624 (697)
Q Consensus       548 ~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y-l~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~l  624 (697)
                      .  .|+...+  +.+..-|++|.-.. |      ...-|... +.-..+.|++.+|..+|...-..+|.+..-....+.+
T Consensus       633 ~--ayyidtqf~ekai~y~ekaaliq-p------~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  633 A--AYYIDTQFSEKAINYFEKAALIQ-P------NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             H--HHHHhhHHHHHHHHHHHHHHhcC-c------cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            2  2232222  45555566654321 1      22334443 3346789999999999999999999887655555544


Q ss_pred             HhccC
Q 005434          625 ENNLA  629 (697)
Q Consensus       625 E~~~~  629 (697)
                      -..+|
T Consensus       704 ~~dlg  708 (840)
T KOG2003|consen  704 AGDLG  708 (840)
T ss_pred             hcccc
Confidence            44443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.44  E-value=0.00022  Score=46.91  Aligned_cols=32  Identities=31%  Similarity=0.585  Sum_probs=27.2

Q ss_pred             CCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434          206 LNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (697)
Q Consensus       206 ~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~  237 (697)
                      |+++.||.+|+++++.+|.+..+|..|++||.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            46788899999999999888899999988874

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.44  E-value=0.0002  Score=47.08  Aligned_cols=31  Identities=32%  Similarity=0.650  Sum_probs=26.9

Q ss_pred             cHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 005434          636 SLVNARKLFESALATYDQNTSLWRDYYSTET  666 (697)
Q Consensus       636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~  666 (697)
                      +++++|.+|++++..+|.++++|..|++||.
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            5788899999999888888899999999885

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.40  E-value=0.002  Score=68.84  Aligned_cols=92  Identities=12%  Similarity=0.121  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++|+...|++..+|...+..+...| +..+...+++++.+.|.++..|...+...+ ..|+++.|...|+++
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~a   96 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKG   96 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999998886 799999999999999


Q ss_pred             hhhCCCCHHHHHHH
Q 005434          219 LRVCPTSEELWVEY  232 (697)
Q Consensus       219 l~~~p~~~~lW~~y  232 (697)
                      ++..|++..+....
T Consensus        97 l~l~P~~~~~~~~l  110 (356)
T PLN03088         97 ASLAPGDSRFTKLI  110 (356)
T ss_pred             HHhCCCCHHHHHHH
Confidence            99999987544443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.37  E-value=0.072  Score=59.48  Aligned_cols=255  Identities=16%  Similarity=0.129  Sum_probs=146.6

Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434          310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (697)
Q Consensus       310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~  389 (697)
                      +.|..||++        ++.|...+..|...+.   ...++.|+.+.++ .|.++.+|..++..-..             
T Consensus       415 ksAl~I~Er--------lemw~~vi~CY~~lg~---~~kaeei~~q~le-k~~d~~lyc~LGDv~~d-------------  469 (777)
T KOG1128|consen  415 KSALVIFER--------LEMWDPVILCYLLLGQ---HGKAEEINRQELE-KDPDPRLYCLLGDVLHD-------------  469 (777)
T ss_pred             HHHHHHHHh--------HHHHHHHHHHHHHhcc---cchHHHHHHHHhc-CCCcchhHHHhhhhccC-------------
Confidence            456666664        4677777777766552   3567777777777 55567777776665432             


Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      +.-+++|-++.+.--     .+     ++.......             ..+++.+.+..-++++++.+|.....|..+.
T Consensus       470 ~s~yEkawElsn~~s-----ar-----A~r~~~~~~-------------~~~~~fs~~~~hle~sl~~nplq~~~wf~~G  526 (777)
T KOG1128|consen  470 PSLYEKAWELSNYIS-----AR-----AQRSLALLI-------------LSNKDFSEADKHLERSLEINPLQLGTWFGLG  526 (777)
T ss_pred             hHHHHHHHHHhhhhh-----HH-----HHHhhcccc-------------ccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence            233344433332211     00     000000000             0125577888888888888888888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA  549 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y  549 (697)
                      -.-++.++.+.|.+.|-+++ .--|++..-|.......+..+.          ..+++..+.+|++.. . +        
T Consensus       527 ~~ALqlek~q~av~aF~rcv-tL~Pd~~eaWnNls~ayi~~~~----------k~ra~~~l~EAlKcn-~-~--------  585 (777)
T KOG1128|consen  527 CAALQLEKEQAAVKAFHRCV-TLEPDNAEAWNNLSTAYIRLKK----------KKRAFRKLKEALKCN-Y-Q--------  585 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHHh-hcCCCchhhhhhhhHHHHHHhh----------hHHHHHHHHHHhhcC-C-C--------
Confidence            88888888888888888888 6778888888765555555442          345555566665432 1 1        


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCC----CCHHHHHHHHHHH
Q 005434          550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPR----PGLVLYQNCIELE  625 (697)
Q Consensus       550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p----~~~~~~~~~i~lE  625 (697)
                                                    ...+|..|..-....|.++.|.+.|.+.+.++-    +++..-+.+..++
T Consensus       586 ------------------------------~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  586 ------------------------------HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             ------------------------------CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence                                          334444444444455666777777776665432    1222333344444


Q ss_pred             hcc-CCCCCcccHHHHHH-HHHHHHhhCCCCchHHHHHHH
Q 005434          626 NNL-ASVGDKDSLVNARK-LFESALATYDQNTSLWRDYYS  663 (697)
Q Consensus       626 ~~~-~~~~~~~~~~raR~-lye~al~~~~~~~~lW~~y~~  663 (697)
                      ... ++.+....+..-|+ ++-+.+.+...++..|.-|+.
T Consensus       636 ~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~  675 (777)
T KOG1128|consen  636 GMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYAL  675 (777)
T ss_pred             hccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhh
Confidence            333 11111123334444 566666666678888988887

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.011  Score=64.03  Aligned_cols=206  Identities=12%  Similarity=0.066  Sum_probs=134.2

Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcc
Q 005434          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (697)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~  376 (697)
                      ++....++.++++..|...|+.|++.-|.+++.|..+=  ....+. ..+..+...+.++++.-|++-+.-..+|--+..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG--~~qaEN-E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN  365 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLG--ITQAEN-ENEQNAISALRRCLELDPTNLEALMALAVSYTN  365 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhh--hHhhhc-cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence            56777788888888999999999999999999886652  223332 245677888999999999998887777766653


Q ss_pred             cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (697)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~  456 (697)
                                   .+.-..|...+..=+...|.-    .|+..     +...++. ...-.-.-...+.....+|-.|..
T Consensus       366 -------------eg~q~~Al~~L~~Wi~~~p~y----~~l~~-----a~~~~~~-~~~~s~~~~~~l~~i~~~fLeaa~  422 (579)
T KOG1125|consen  366 -------------EGLQNQALKMLDKWIRNKPKY----VHLVS-----AGENEDF-ENTKSFLDSSHLAHIQELFLEAAR  422 (579)
T ss_pred             -------------hhhHHHHHHHHHHHHHhCccc----hhccc-----cCccccc-cCCcCCCCHHHHHHHHHHHHHHHH
Confidence                         233345555555555444331    11111     0000000 000000012345566677777766


Q ss_pred             cCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          457 MGC--LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       457 ~~~--~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      .+|  .++++.....-++-..|.+++|...++.|| ...|++..+|.++-..+-. +.         .-+++...|.+|+
T Consensus       423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLAN-~~---------~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLAN-GN---------RSEEAISAYNRAL  491 (579)
T ss_pred             hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhcC-Cc---------ccHHHHHHHHHHH
Confidence            667  478888888888888888999988899988 7888889999876544422 21         2466777788888


Q ss_pred             hhcCh
Q 005434          535 TKVSA  539 (697)
Q Consensus       535 ~~~p~  539 (697)
                      ..-|.
T Consensus       492 qLqP~  496 (579)
T KOG1125|consen  492 QLQPG  496 (579)
T ss_pred             hcCCC
Confidence            76664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.33  E-value=0.039  Score=60.91  Aligned_cols=198  Identities=17%  Similarity=0.132  Sum_probs=120.4

Q ss_pred             chHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHH----HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH-
Q 005434          390 PSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMD----MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-  462 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~-  462 (697)
                      .+++..|..+|++||+.....  ..-..++.++.+    .+..  .+      ........++|+.|+++-..  ...+ 
T Consensus       254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GK------f~EA~~~~e~Al~I~~~~~~--~~~~~  323 (508)
T KOG1840|consen  254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GK------FAEAEEYCERALEIYEKLLG--ASHPE  323 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CC------hHHHHHHHHHHHHHHHHhhc--cChHH
Confidence            477889999999998754211  011222222221    1110  00      00022345667777776222  2333 


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434          463 --DIAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (697)
Q Consensus       463 --~lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a  533 (697)
                        .....-+..+...+.+++|..++.++++.       .+|.-..+......+....|.          .++++++|++|
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk----------~~ea~~~~k~a  393 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK----------YKEAEELYKKA  393 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHH
Confidence              34555566677788999999998888731       122234566666666666663          78899999999


Q ss_pred             HhhcC-------hhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH---HHHhCCHHHHHH
Q 005434          534 LTKVS-------ALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQARE  602 (697)
Q Consensus       534 l~~~p-------~~~~~~lW~~y~~~~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~---~~~~~~~~~AR~  602 (697)
                      |....       +....+||.+...+.+... +.+..+|..+..+. +..+ +..+.+-..|...   +...|+++.|-+
T Consensus       394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCG-PDHPDVTYTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhC-CCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence            98542       2225789999888765544 56788888888776 3322 2344555555444   456799999999


Q ss_pred             HHHHHHh
Q 005434          603 MYKRFLA  609 (697)
Q Consensus       603 iy~~~i~  609 (697)
                      +-++++.
T Consensus       472 ~~~~~~~  478 (508)
T KOG1840|consen  472 LEEKVLN  478 (508)
T ss_pred             HHHHHHH
Confidence            8888875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.12  Score=54.38  Aligned_cols=165  Identities=12%  Similarity=0.099  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434          310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (697)
Q Consensus       310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~  389 (697)
                      +.|...|-+.-..+-.+.+...++..+|+..+.   +..+-.++-+.....|++|.....++.++-.             
T Consensus       541 deald~f~klh~il~nn~evl~qianiye~led---~aqaie~~~q~~slip~dp~ilskl~dlydq-------------  604 (840)
T KOG2003|consen  541 DEALDCFLKLHAILLNNAEVLVQIANIYELLED---PAQAIELLMQANSLIPNDPAILSKLADLYDQ-------------  604 (840)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC---HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-------------
Confidence            444455444333333455666677777766553   4567777888888899999999999988843             


Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      .|.-..|-+.|-..-.-.|..-   .-+.|+-.++.              .....+++...|++|-...|...+.-+.-+
T Consensus       605 egdksqafq~~ydsyryfp~ni---e~iewl~ayyi--------------dtqf~ekai~y~ekaaliqp~~~kwqlmia  667 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYRYFPCNI---ETIEWLAAYYI--------------DTQFSEKAINYFEKAALIQPNQSKWQLMIA  667 (840)
T ss_pred             ccchhhhhhhhhhcccccCcch---HHHHHHHHHHH--------------hhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            2445556666555555556442   11111111110              023357888999998777676444334456


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (697)
                      ..+.+.|++++|..+|...- +++|.+.+-....+.+.-
T Consensus       668 sc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~  705 (840)
T KOG2003|consen  668 SCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhc
Confidence            88999999999999999877 899998776655555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.24  E-value=0.011  Score=63.11  Aligned_cols=103  Identities=10%  Similarity=0.017  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ..+.+...+...+..+|+|.-+|..-.+...+.+ ..++.+.+++++...|..+-+|+.|+...+ ..|+...|-.++++
T Consensus       321 ~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~  399 (484)
T COG4783         321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNR  399 (484)
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHH
Confidence            3566778888899999999999999999888776 568999999999999999999999999998 79999999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHH
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNK  242 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~  242 (697)
                      ++...|+++..|...++-....++.
T Consensus       400 ~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         400 YLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HhhcCCCCchHHHHHHHHHHHhCch
Confidence            9999999999999998877655543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.23  E-value=0.0049  Score=50.40  Aligned_cols=90  Identities=22%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCC
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGT  670 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (697)
                      +...|.+++|.+.+++++...|.....+...+.+....+      +.+.+.++|+.++...+.++..|...+......|+
T Consensus        10 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189          10 YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG------KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            345789999999999999998887777777777777777      88999999999999888888899999999999999


Q ss_pred             hhhHHHHHHHHHhhcC
Q 005434          671 SETATAVYWRARKTLK  686 (697)
Q Consensus       671 ~~~a~~vy~ral~~~~  686 (697)
                      .+.|..++.++++..+
T Consensus        84 ~~~a~~~~~~~~~~~~   99 (100)
T cd00189          84 YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHccCC
Confidence            9999999999887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.13  Score=52.30  Aligned_cols=219  Identities=15%  Similarity=0.125  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHH--HHHHHHHHhcccCCCCC
Q 005434          444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWL--LRISVEIRCVTRNSFSP  518 (697)
Q Consensus       444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~--~~i~l~~~~~~~~~~~~  518 (697)
                      .++|..+|-..+..+|.+.+.-+...++..+-|..++|..+-...+.  -|+-   .++..  ...+-.+..|-      
T Consensus        51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT~~qr~lAl~qL~~Dym~aGl------  122 (389)
T COG2956          51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLTFEQRLLALQQLGRDYMAAGL------  122 (389)
T ss_pred             cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHhhh------
Confidence            46788888888888888888888899999999999999888777662  3442   22211  11111222332      


Q ss_pred             CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHH---HhC
Q 005434          519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI---QKD  595 (697)
Q Consensus       519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~---~~~  595 (697)
                          ++++.++|..-... | .-...--+..+..+.... .-++..+.|..... ..+......|...|.+...   ...
T Consensus       123 ----~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~  194 (389)
T COG2956         123 ----LDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATR-EWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASS  194 (389)
T ss_pred             ----hhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhh
Confidence                56777777665431 1 000000011111111111 12222222222111 1122235666777877754   357


Q ss_pred             CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC-c----hHHHHHHHHHHhcCC
Q 005434          596 GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN-T----SLWRDYYSTETKLGT  670 (697)
Q Consensus       596 ~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~-~----~lW~~y~~fE~~~G~  670 (697)
                      ++++|+.++++|+...|.++..-+...+++...|      +...|-+.+++++++++.- +    .+..-|.    ..|.
T Consensus       195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g------~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~----~lg~  264 (389)
T COG2956         195 DVDRARELLKKALQADKKCVRASIILGRVELAKG------DYQKAVEALERVLEQNPEYLSEVLEMLYECYA----QLGK  264 (389)
T ss_pred             hHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc------chHHHHHHHHHHHHhChHHHHHHHHHHHHHHH----HhCC
Confidence            8999999999999988888777777778887777      8899999999999988732 2    3333343    3688


Q ss_pred             hhhHHHHHHHHHhhcCCc
Q 005434          671 SETATAVYWRARKTLKDS  688 (697)
Q Consensus       671 ~~~a~~vy~ral~~~~~~  688 (697)
                      ++....-..+++...++.
T Consensus       265 ~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         265 PAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHHHHHccCCc
Confidence            888888888888777654

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=97.20  E-value=0.0005  Score=44.20  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=23.5

Q ss_pred             CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434          207 NVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (697)
Q Consensus       207 ~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~  237 (697)
                      .++.||.||+|.+..+|+ +..|+.|++||.
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe   31 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE   31 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence            367788888888888875 688888888874

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.19  E-value=0.001  Score=51.74  Aligned_cols=59  Identities=15%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             HHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434          167 FCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (697)
Q Consensus       167 ~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~  226 (697)
                      .....| +..+..+|++++..+|.++.+|...+...+ ..|+.+.|...|++++...|+++
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            334445 578999999999999999999999999996 89999999999999999999864

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.17  E-value=0.0018  Score=50.99  Aligned_cols=66  Identities=12%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCC
Q 005434          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCP  223 (697)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-~~~~aR~~~~r~l~~~p  223 (697)
                      +...|...+......+ +..+...|++++..+|+++.+|...+...+ ..| +...|...+++++...|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            5678888888877776 688999999999999999999999999886 678 79999999999999987

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.16  E-value=0.0032  Score=51.57  Aligned_cols=84  Identities=10%  Similarity=0.092  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.+...|..++......+ ...+...|++++...|.++..|...+.... ..|+.+.|...+.++
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~   94 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-KLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence            455678899999999998888888888777666 567889999999999998888988888886 688999999999999


Q ss_pred             hhhCCC
Q 005434          219 LRVCPT  224 (697)
Q Consensus       219 l~~~p~  224 (697)
                      ++.+|.
T Consensus        95 ~~~~~~  100 (100)
T cd00189          95 LELDPN  100 (100)
T ss_pred             HccCCC
Confidence            988873

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.14  E-value=0.00096  Score=47.47  Aligned_cols=43  Identities=21%  Similarity=0.327  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434          191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (697)
Q Consensus       191 ~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~  234 (697)
                      |.+|..++.... ..|+.+.|+.+|+++++.+|++..+|..+++
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            568999999986 7999999999999999999999999988764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.13  E-value=0.005  Score=65.84  Aligned_cols=98  Identities=10%  Similarity=0.021  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..+.|...|++|+..+|.++..|...+..+...|++++|...+++|+ ...|++...|.....+....|          
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg----------   84 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLE----------   84 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhC----------
Confidence            567899999999999999999999999999999999999999999999 789999999988887777766          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMAL  550 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~  550 (697)
                      +.+.+...|++|+...|.......|+..+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            47889999999998877665566776554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.11  E-value=0.017  Score=64.23  Aligned_cols=203  Identities=18%  Similarity=0.160  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +.+..|..+|++        ..+|..-+.++...|+..+|..+..+-+ . .|+...+|....+....            
T Consensus       412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l-e-k~~d~~lyc~LGDv~~d------------  469 (777)
T KOG1128|consen  412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL-E-KDPDPRLYCLLGDVLHD------------  469 (777)
T ss_pred             chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh-c-CCCcchhHHHhhhhccC------------
Confidence            456677777777        4689999999999999999999999888 4 56677888766554421            


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKF-FMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~-~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~  598 (697)
                        .+   .|++|....+.. +.. =++|... ..+++  +.+.+-++..+..-+.      ....|-.+=.-..+.++..
T Consensus       470 --~s---~yEkawElsn~~-sar-A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  470 --PS---LYEKAWELSNYI-SAR-AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             --hH---HHHHHHHHhhhh-hHH-HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhH
Confidence              22   266665433211 111 0011100 11111  2333444444432111      1222222222245678999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHH
Q 005434          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVY  678 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy  678 (697)
                      .|-+.|.+++...|.+..-|.....-....+      +..+|+..+..|+..+-.+..+|.+|.-.-.+.|..+.|.+.|
T Consensus       537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~------~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK------KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHHHHHHHhhcCCCchhhhhhhhHHHHHHh------hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            9999999999999999999988777777777      7799999999999987678899999999999999999999999


Q ss_pred             HHHHhhc
Q 005434          679 WRARKTL  685 (697)
Q Consensus       679 ~ral~~~  685 (697)
                      +|-+..-
T Consensus       611 ~rll~~~  617 (777)
T KOG1128|consen  611 HRLLDLR  617 (777)
T ss_pred             HHHHHhh
Confidence            9986543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.10  E-value=0.0045  Score=56.74  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+..+|+-++...|.+..-|+...-.+...| +..+...|.+|..+.|++|......+.-.+ ..|+++.|++.|+.+
T Consensus        51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L-~lG~~~~A~~aF~~A  129 (157)
T PRK15363         51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL-ACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            566778999999999999999999999888877 689999999999999999999998888887 799999999999999


Q ss_pred             hhhCCCC
Q 005434          219 LRVCPTS  225 (697)
Q Consensus       219 l~~~p~~  225 (697)
                      +.++...
T Consensus       130 i~~~~~~  136 (157)
T PRK15363        130 VRICGEV  136 (157)
T ss_pred             HHHhccC
Confidence            9999543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.42  Score=48.65  Aligned_cols=195  Identities=16%  Similarity=0.159  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          391 SQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~---~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                      ..+++|+++=++-++.-+..   .|-..|..+-....               ..++.++|+..+.+|++.+|++...-+.
T Consensus       155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~---------------~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL---------------ASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh---------------hhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            55777777777666554433   24455555544322               2356889999999999999999888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~  547 (697)
                      ..++++..|+++.|.+.+++++ .++|.-...-                      .+.+.+.|.+- .  .+.+    |.
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~ev----------------------l~~L~~~Y~~l-g--~~~~----~~  269 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVL-EQNPEYLSEV----------------------LEMLYECYAQL-G--KPAE----GL  269 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHH-HhChHHHHHH----------------------HHHHHHHHHHh-C--CHHH----HH
Confidence            9999999999999999999999 7777521110                      11111112221 0  1111    11


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Q 005434          548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN  627 (697)
Q Consensus       548 ~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~  627 (697)
                         .|+           .++.....       ...+-....+.+....|++.|.....+-+...| +...+-..++++..
T Consensus       270 ---~fL-----------~~~~~~~~-------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~  327 (389)
T COG2956         270 ---NFL-----------RRAMETNT-------GADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLA  327 (389)
T ss_pred             ---HHH-----------HHHHHccC-------CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhc
Confidence               111           11211110       122223334555567788888888777777654 45556666766654


Q ss_pred             cCCCC-CcccHHHHHHHHHHHHhhCC
Q 005434          628 LASVG-DKDSLVNARKLFESALATYD  652 (697)
Q Consensus       628 ~~~~~-~~~~~~raR~lye~al~~~~  652 (697)
                      -.+.| .+.+..-.|++-..-+...|
T Consensus       328 daeeg~~k~sL~~lr~mvge~l~~~~  353 (389)
T COG2956         328 DAEEGRAKESLDLLRDMVGEQLRRKP  353 (389)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhcC
Confidence            44332 23456666666666555444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.02  E-value=0.0022  Score=49.90  Aligned_cols=56  Identities=14%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (697)
                      .+..+.|...|++++..+|.+++.|..++.++...|++++|...+++++ ...|+++
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL-ELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCC
Confidence            4678999999999999999999999999999999999999999999999 7888763

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.99  E-value=1.1  Score=51.99  Aligned_cols=185  Identities=10%  Similarity=0.036  Sum_probs=115.2

Q ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005434          174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGED  253 (697)
Q Consensus       174 ~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~  253 (697)
                      ..+..+|-+++..+|.....|-....+.- ...++..|+.-|++|....|+...-|...++.-.+..+...+--..+..+
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYr-d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYR-DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            35678999999999999999998888774 44589999999999999999877777766655332222212111112211


Q ss_pred             cccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHH
Q 005434          254 KGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRF  333 (697)
Q Consensus       254 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~  333 (697)
                      ..    ++...--..|        ...+                   .-.+..++...+..-|+.|+..-|.++..|..+
T Consensus       554 qk----a~a~~~k~nW--------~~rG-------------------~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gL  602 (1238)
T KOG1127|consen  554 QK----APAFACKENW--------VQRG-------------------PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGL  602 (1238)
T ss_pred             hh----chHHHHHhhh--------hhcc-------------------ccccCccchhhHHHHHHHHhcCCchhHHHHHHH
Confidence            11    1110001122        2111                   011122345567888999999999999999999


Q ss_pred             HHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc
Q 005434          334 FEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN  406 (697)
Q Consensus       334 ~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~  406 (697)
                      -+.|-+.+   ....+-++++++....|.+.-.-+..|-.+-.             .|.+..|.+.+...+..
T Consensus       603 GeAY~~sG---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-------------~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  603 GEAYPESG---RYSHALKVFTKASLLRPLSKYGRFKEAVMECD-------------NGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHHHHhcC---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHH
Confidence            88887654   34667888888888888763332333333321             35566666666665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.97  E-value=0.022  Score=66.60  Aligned_cols=165  Identities=8%  Similarity=0.085  Sum_probs=98.0

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      .|.+.+.|...+..+...+++++|.++++.++ ..+|++..+|....-+..+.+.          ....--+  .++...
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l-~~~P~~i~~yy~~G~l~~q~~~----------~~~~~lv--~~l~~~   93 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHL-KEHKKSISALYISGILSLSRRP----------LNDSNLL--NLIDSF   93 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCcceehHHHHHHHHHhhcc----------hhhhhhh--hhhhhc
Confidence            57788999999999999999999999999999 8999988888766555554443          1121111  445444


Q ss_pred             ChhhhHHHHHHHHHHHHhh-hH---HHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Q 005434          538 SALESESLWLMALKFFMNQ-KH---YFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP  613 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~-~~---~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~  613 (697)
                      +...   =|. .++|+... ++   .-..+|.                     .+..+.+.|+.++|..+|+++++..|.
T Consensus        94 ~~~~---~~~-~ve~~~~~i~~~~~~k~Al~~---------------------LA~~Ydk~g~~~ka~~~yer~L~~D~~  148 (906)
T PRK14720         94 SQNL---KWA-IVEHICDKILLYGENKLALRT---------------------LAEAYAKLNENKKLKGVWERLVKADRD  148 (906)
T ss_pred             cccc---chh-HHHHHHHHHHhhhhhhHHHHH---------------------HHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence            4321   121 12222110 00   0001111                     122234557777777777777777777


Q ss_pred             CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC---C---chHHHHHHHHHHh
Q 005434          614 GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ---N---TSLWRDYYSTETK  667 (697)
Q Consensus       614 ~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~---~---~~lW~~y~~fE~~  667 (697)
                      +......|++.-...       ++++|+.++.+|+..+-.   .   .++|..|+.....
T Consensus       149 n~~aLNn~AY~~ae~-------dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~  201 (906)
T PRK14720        149 NPEIVKKLATSYEEE-------DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD  201 (906)
T ss_pred             cHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence            777666666554332       567777777777765541   1   1567766654433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.94  E-value=0.0025  Score=50.75  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL  228 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l  228 (697)
                      +..+..++++++..+|.++.+|..++.... ..|+++.|...|++++...|+++..
T Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen   11 YEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHH
Confidence            568899999999999999999999999996 8999999999999999999987644

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.93  E-value=0.0016  Score=46.32  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                      |..|..++..+...|++++|.+++++++ +.+|++...|..+..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l-~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRAL-ALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999 899999999987654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.76  E-value=1.6  Score=50.91  Aligned_cols=148  Identities=13%  Similarity=0.086  Sum_probs=97.9

Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCCh--hhHHHHHHhhcccCCCCCCCC
Q 005434          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP--KYWDWLARLKMTDSVSKDGTS  385 (697)
Q Consensus       308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~--~~w~~~a~~~l~~~~~~~~~~  385 (697)
                      +..+|+..|++|.+--+++.+.+....+.+++-+   +.+.+..|.-...+.-|.-.  .-|...+-++++         
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~---~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe---------  574 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEES---TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE---------  574 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc---cHHHHHHHHHHHhhhchHHHHHhhhhhccccccC---------
Confidence            3467888899998877777788888777776543   45666666544444444332  235554444543         


Q ss_pred             cCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHH
Q 005434          386 EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI  464 (697)
Q Consensus       386 ~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~l  464 (697)
                          .+++..|..-|+.|+...|.+. .|..   +-+.+.               ..+....+..+|.+|...+|.+.-.
T Consensus       575 ----a~n~h~aV~~fQsALR~dPkD~n~W~g---LGeAY~---------------~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  575 ----AHNLHGAVCEFQSALRTDPKDYNLWLG---LGEAYP---------------ESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             ----ccchhhHHHHHHHHhcCCchhHHHHHH---HHHHHH---------------hcCceehHHHhhhhhHhcCcHhHHH
Confidence                3667788889999998888653 5543   222222               1355778899999999888876333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          465 AHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       465 w~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      -..-+-++...|.+.+|...+...+
T Consensus       633 ~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  633 RFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333566777889999888887766

>PRK11906 transcriptional regulator; Provisional

Probab=96.72  E-value=0.29  Score=52.67  Aligned_cols=138  Identities=10%  Similarity=0.035  Sum_probs=101.0

Q ss_pred             chHHHHHHHHHHHHh---hcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434          390 PSQMQKAIQVYEEAL---KNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (697)
Q Consensus       390 ~~~~~~a~~vye~al---~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~  463 (697)
                      +...+.|..+|.+|+   ..-|.-.   -|.++..+........+           .......++..-++|++.+|.++-
T Consensus       271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-----------~~~~~~~a~~~A~rAveld~~Da~  339 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-----------LELAAQKALELLDYVSDITTVDGK  339 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHhcCCCCHH
Confidence            356788999999999   4444322   34455555443322111           245678899999999999999987


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh--
Q 005434          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--  541 (697)
Q Consensus       464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~--  541 (697)
                      .-...+....-.++++.|...+++|+ .-+|++...|..+.-+..-.|          +.+++.+..++|++..|..-  
T Consensus       340 a~~~~g~~~~~~~~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G----------~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        340 ILAIMGLITGLSGQAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNE----------KIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHhccCchhhHH
Confidence            66666666666778999999999999 899999999988887776666          36888899999998877654  


Q ss_pred             -hHHHHH-HH
Q 005434          542 -SESLWL-MA  549 (697)
Q Consensus       542 -~~~lW~-~y  549 (697)
                       ..++|. +|
T Consensus       409 ~~~~~~~~~~  418 (458)
T PRK11906        409 VVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHH
Confidence             355665 44

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.72  E-value=0.035  Score=48.50  Aligned_cols=93  Identities=17%  Similarity=0.119  Sum_probs=77.2

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYST  664 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~f  664 (697)
                      ....|++++|.+.|++++...|.+   ...+...+......+      +.+.|..+|+.++..+|.+   +..|......
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795        12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG------KYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc------cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            456799999999999999887654   345555666666666      8899999999999988843   5788888888


Q ss_pred             HHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          665 ETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       665 E~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      ....|+.+.|..++.+++...|++.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCCh
Confidence            8899999999999999999988764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.67  E-value=0.068  Score=49.09  Aligned_cols=116  Identities=17%  Similarity=0.169  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 005434          346 DDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMD  422 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~  422 (697)
                      ...+...++.+...+|++   ....+.+|+....             .+.++.|...|+.++...|+..+ ...+.+-..
T Consensus        27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-------------~g~~~~A~~~l~~~~~~~~d~~l-~~~a~l~LA   92 (145)
T PF09976_consen   27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-------------QGDYDEAKAALEKALANAPDPEL-KPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCCCHHH-HHHHHHHHH
Confidence            355677788899999998   3346667777765             48899999999999998765531 111222111


Q ss_pred             HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      .+.             ...+..+.+...++. +...+..+..+...++++...|+.++|+..|++|+
T Consensus        93 ~~~-------------~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   93 RIL-------------LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHH-------------HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            110             013557788888866 33345567788888999999999999999999875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.071  Score=53.89  Aligned_cols=120  Identities=17%  Similarity=0.097  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcC
Q 005434          348 MHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP  426 (697)
Q Consensus       348 ~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~  426 (697)
                      ..-.-++.-+..+|++.+-|..+++.++.             .++...|..-|.+|++-.|++. ++..|.......-  
T Consensus       140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-------------~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a--  204 (287)
T COG4235         140 ALIARLETHLQQNPGDAEGWDLLGRAYMA-------------LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA--  204 (287)
T ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHH-------------hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--
Confidence            33344666778899999999999999986             5889999999999999888665 8888877654321  


Q ss_pred             CcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                         +          .....++..++++++..+|.+...-..++.-....|++.+|....+..+ ...|.+
T Consensus       205 ---~----------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL-~~lp~~  260 (287)
T COG4235         205 ---G----------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL-DLLPAD  260 (287)
T ss_pred             ---C----------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCC
Confidence               1          2335689999999999999988766666766778999999999999988 555553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.44  E-value=0.038  Score=48.22  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 005434          140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR  212 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR  212 (697)
                      ...+...|+.++..+|++   ...+...+....+.+ +..+...|++++..+|++   +.+|...+.... ..|+.+.|.
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~A~   96 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-ELGDKEKAK   96 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-HhCChHHHH
Confidence            456778999999999987   467777777766666 578999999999999885   678888888875 789999999


Q ss_pred             HHHHHhhhhCCCCH
Q 005434          213 ALMQNGLRVCPTSE  226 (697)
Q Consensus       213 ~~~~r~l~~~p~~~  226 (697)
                      ..+++++...|++.
T Consensus        97 ~~~~~~~~~~p~~~  110 (119)
T TIGR02795        97 ATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHHCcCCh
Confidence            99999999999875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.33  E-value=0.025  Score=44.33  Aligned_cols=68  Identities=13%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      ++..|...+..+...|++++|...+.+++ ...|++..+|..........+.         +.+++.+.|++|++.-|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~p~~~~~~~~~g~~~~~~~~---------~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-ELDPNNAEAYYNLGLAYMKLGK---------DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCc---------cHHHHHHHHHHHHHcCc
Confidence            35678888888888888888888888888 6888888888887777766652         25777777888876443

...

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=96.29  E-value=0.04  Score=48.74  Aligned_cols=55  Identities=15%  Similarity=0.185  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 005434          615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATAVYWRA  681 (697)
Q Consensus       615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ra  681 (697)
                      +++|+.||++-   .         ..+++|..+.....  ....+|..|+.+.+..|+...|..||++|
T Consensus        69 LkiWi~ya~~~---~---------dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G  125 (125)
T smart00777       69 LKIWLKYADNC---D---------EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG  125 (125)
T ss_pred             HHHHHHHHHhc---C---------CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence            46899999652   2         35788998887644  55699999999999999999999999864

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.26  E-value=0.22  Score=53.36  Aligned_cols=143  Identities=13%  Similarity=-0.039  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..+.++..+...+...|.++-+|..-++++...|+.++|.+.+++++ ...|++.-+|..|.+..++.+.         
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~a~all~~g~---------  389 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNLAQALLKGGK---------  389 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHHHHHHHhcCC---------
Confidence            446778888888888889999999999999999999999999999999 7899999999999999888775         


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR  601 (697)
                       ..++..+....+...|..  ...|.+.++-+...++.                     ..--.++.+.+...|+.+.|.
T Consensus       390 -~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~---------------------~~a~~A~AE~~~~~G~~~~A~  445 (484)
T COG4783         390 -PQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNR---------------------AEALLARAEGYALAGRLEQAI  445 (484)
T ss_pred             -hHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCch---------------------HHHHHHHHHHHHhCCCHHHHH
Confidence             455666677776666533  56777655433322221                     122244566666788888888


Q ss_pred             HHHHHHHhCCCCCHHHH
Q 005434          602 EMYKRFLALPRPGLVLY  618 (697)
Q Consensus       602 ~iy~~~i~~~p~~~~~~  618 (697)
                      ..+.++-........-|
T Consensus       446 ~~l~~A~~~~~~~~~~~  462 (484)
T COG4783         446 IFLMRASQQVKLGFPDW  462 (484)
T ss_pred             HHHHHHHHhccCCcHHH
Confidence            88888877654433333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.12  Score=52.29  Aligned_cols=97  Identities=14%  Similarity=0.019  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccc
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKAD  522 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~  522 (697)
                      ..+......+.-+..||.+.+-|...+..++..|+...|..-|.+|. +.-|++.++|..|.........       ..+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~-rL~g~n~~~~~g~aeaL~~~a~-------~~~  208 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL-RLAGDNPEILLGLAEALYYQAG-------QQM  208 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcC-------Ccc
Confidence            46777777888899999999999999999999999999999999999 8999999999999988765432       114


Q ss_pred             hHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434          523 ILSIFELLKCILTKVSALESESLWLM  548 (697)
Q Consensus       523 ~~~~~~~f~~al~~~p~~~~~~lW~~  548 (697)
                      ..++.++|.++++.-|. +...+|..
T Consensus       209 ta~a~~ll~~al~~D~~-~iral~lL  233 (287)
T COG4235         209 TAKARALLRQALALDPA-NIRALSLL  233 (287)
T ss_pred             cHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence            56788889999975543 33444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.19  E-value=0.062  Score=54.61  Aligned_cols=92  Identities=16%  Similarity=0.099  Sum_probs=72.9

Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHHH
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGL---VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYSTE  665 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~fE  665 (697)
                      ...|++++|...|+.++...|.+.   ..+.+.+.+....+      +.+.|...|+.++..+|.+   ++.|..-+..-
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g------~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~  227 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG------KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM  227 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence            345889999999999999888762   33333344444566      8899999999999999954   47777776666


Q ss_pred             HhcCChhhHHHHHHHHHhhcCCcc
Q 005434          666 TKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       666 ~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      ...|+.+.|..+|+++++..|++.
T Consensus       228 ~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        228 QDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCCH
Confidence            678999999999999999998774

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.15  E-value=0.057  Score=57.92  Aligned_cols=101  Identities=12%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005434          391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT  470 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~  470 (697)
                      ++++.|..+|++-.+..|...+.  .++....                  .+.-.+|..++.+++..+|.+.++....++
T Consensus       183 ~~~~~ai~lle~L~~~~pev~~~--LA~v~l~------------------~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~  242 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPEVAVL--LARVYLL------------------MNEEVEAIRLLNEALKENPQDSELLNLQAE  242 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCcHHHH--HHHHHHh------------------cCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56889999999988888775422  2222221                  011347888999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434          471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (697)
Q Consensus       471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (697)
                      +++..++++.|.++.++|+ ...|.+.+.|...++..+..+.
T Consensus       243 fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAV-ELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCC
Confidence            9999999999999999999 7999999999999988888774

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.12  E-value=0.021  Score=45.34  Aligned_cols=57  Identities=18%  Similarity=0.130  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL  499 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l  499 (697)
                      +..+.+..++++++..+|.++.+|..++.++...|++++|...+++++ ...|++...
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-~~~p~~~~~   65 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL-ELSPDDPDA   65 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH-HHCCCcHHH
Confidence            557899999999999999999999999999999999999999999999 788876544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.11  E-value=0.094  Score=48.21  Aligned_cols=88  Identities=6%  Similarity=-0.138  Sum_probs=53.6

Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS  671 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~  671 (697)
                      ...|+++.|.++|+-++...|.+...|..........+      +...|-.+|.+|+...++++.....-..=-...|+.
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g------~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK------HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh------hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence            34566666666666666666666666666665555555      666666666666666665555555555555556666


Q ss_pred             hhHHHHHHHHHhhc
Q 005434          672 ETATAVYWRARKTL  685 (697)
Q Consensus       672 ~~a~~vy~ral~~~  685 (697)
                      +.|++.|+.|+..+
T Consensus       120 ~~A~~aF~~Ai~~~  133 (157)
T PRK15363        120 CYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666666655

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.07  E-value=1.1  Score=44.46  Aligned_cols=52  Identities=12%  Similarity=0.004  Sum_probs=25.2

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                      |.+..+-..++....+.|++..|...+.++. ...|++.+.|....-...+.|
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCCCChhhhhHHHHHHHHcc
Confidence            4444444445555555555555555555555 445555555544444443333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.01  E-value=0.15  Score=54.74  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (697)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~  408 (697)
                      +-..++.++..   ....+.+..+++++.+..|+   .+..+|+.++..             +.-.+|..+..++|+..|
T Consensus       171 Lv~~Ll~~l~~---t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-------------~~E~~AI~ll~~aL~~~p  231 (395)
T PF09295_consen  171 LVDTLLKYLSL---TQRYDEAIELLEKLRERDPE---VAVLLARVYLLM-------------NEEVEAIRLLNEALKENP  231 (395)
T ss_pred             HHHHHHHHHhh---cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-------------CcHHHHHHHHHHHHHhCC
Confidence            34444444432   22457788999999988864   667788888752             445689999999999888


Q ss_pred             chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434          409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA  486 (697)
Q Consensus       409 ~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~  486 (697)
                      ... +....++|+..                  .+..+.|..+.++|+...|.+...|...++.+...|+++.|...+.
T Consensus       232 ~d~~LL~~Qa~fLl~------------------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  232 QDSELLNLQAEFLLS------------------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             CCHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            654 77788888765                  2346889999999999999999999999999999999999975553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.82  E-value=0.11  Score=52.40  Aligned_cols=89  Identities=11%  Similarity=-0.037  Sum_probs=75.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      .+....|...|.+||..+|.++-.++.-+.-+.+.|.++.|.+=++.|+ ...|+..+.|.+.-......|         
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~g---------  163 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALG---------  163 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccC---------
Confidence            3568899999999999999999999999999999999999999999999 788988888876554454444         


Q ss_pred             cchHHHHHHHHHHHhhcChh
Q 005434          521 ADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~  540 (697)
                       +.+.+.+-|++||..-|..
T Consensus       164 -k~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  164 -KYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             -cHHHHHHHHHhhhccCCCc
Confidence             3677777799999877755

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.72  E-value=0.11  Score=52.25  Aligned_cols=93  Identities=9%  Similarity=-0.005  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      -...+...|.+|+...|.|.-+...-+.-..+.| +..+.+-.+.||.++|...+.|.....-.+ .+|++..|-..|++
T Consensus        96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykK  174 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKK  174 (304)
T ss_pred             hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHh
Confidence            3677889999999999999999888888777777 678999999999999999999998888776 78999999999999


Q ss_pred             hhhhCCCCHHHHHHH
Q 005434          218 GLRVCPTSEELWVEY  232 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y  232 (697)
                      ||...|+++..|...
T Consensus       175 aLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  175 ALELDPDNESYKSNL  189 (304)
T ss_pred             hhccCCCcHHHHHHH
Confidence            999999987555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.69  E-value=0.39  Score=47.48  Aligned_cols=167  Identities=11%  Similarity=-0.000  Sum_probs=84.4

Q ss_pred             HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHH
Q 005434          453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (697)
Q Consensus       453 ~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~  532 (697)
                      +....+|.+.++ ..+..-+...|+-+.+..+..++. -.+|.+..+-..++......|.          ...+..+|.+
T Consensus        58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~----------~~~A~~~~rk  125 (257)
T COG5010          58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGN----------FGEAVSVLRK  125 (257)
T ss_pred             HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcc----------hHHHHHHHHH
Confidence            334445555555 555555555555555555555544 3455555555555555555542          4555556666


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC
Q 005434          533 ILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL  610 (697)
Q Consensus       533 al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~  610 (697)
                      +...-|+.  ...|..-.--+...+  +.++.-|.++++..+.      .+.+.....-++.-.|+.+.|+.++..+...
T Consensus       126 A~~l~p~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         126 AARLAPTD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             HhccCCCC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            65544433  234433221222222  3455556666543321      2334444444444556666666666666666


Q ss_pred             CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434          611 PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFE  645 (697)
Q Consensus       611 ~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye  645 (697)
                      ++.+..+-...+.+-..++      ++..|+++=.
T Consensus       198 ~~ad~~v~~NLAl~~~~~g------~~~~A~~i~~  226 (257)
T COG5010         198 PAADSRVRQNLALVVGLQG------DFREAEDIAV  226 (257)
T ss_pred             CCCchHHHHHHHHHHhhcC------ChHHHHhhcc
Confidence            6655555555454444444      4455555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.67  E-value=0.37  Score=45.34  Aligned_cols=79  Identities=8%  Similarity=-0.064  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      ...|...+......+ +..+...|.+++...|+.   +.+|...+.... ..|+.+.|...+++++...|.....|....
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            567777777766666 578999999999987763   357888888885 899999999999999999998877766655


Q ss_pred             HHHH
Q 005434          234 RMEL  237 (697)
Q Consensus       234 ~~E~  237 (697)
                      .+..
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            5543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.67  E-value=0.015  Score=38.70  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434          450 VYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (697)
Q Consensus       450 ~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~  482 (697)
                      .|++||+.+|.++..|..++.++...|+.++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378999999999999999999999999999986

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.51  E-value=0.036  Score=45.53  Aligned_cols=77  Identities=9%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKG--DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~--~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~  216 (697)
                      ...+..+|++++...|+  +...|...+....+.| +.++..++++ +...|.++.....+|+-.+ ..|+.+.|+.+|+
T Consensus         5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~   82 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALE   82 (84)
T ss_dssp             HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHh
Confidence            56788999999999996  4667887777766766 6788999998 7788887777777788776 7899999999998


Q ss_pred             Hh
Q 005434          217 NG  218 (697)
Q Consensus       217 r~  218 (697)
                      ++
T Consensus        83 ~~   84 (84)
T PF12895_consen   83 KA   84 (84)
T ss_dssp             HH
T ss_pred             cC
Confidence            75

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.49  E-value=0.23  Score=51.39  Aligned_cols=146  Identities=15%  Similarity=0.105  Sum_probs=92.6

Q ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHH
Q 005434          530 LKCILTKVSALESESLWLMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRF  607 (697)
Q Consensus       530 f~~al~~~p~~~~~~lW~~y~~~~~~--~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~  607 (697)
                      ++.|++.+........-...++.+..  +.+.+.+.++.+.+.    ....-...+..+|+.+..-...+..|.-+|+..
T Consensus       118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El  193 (290)
T PF04733_consen  118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL  193 (290)
T ss_dssp             HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            55666655433333333333333332  336677777775421    110012233445555554445689999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh-hhHHHHHHHHHhhc
Q 005434          608 LALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS-ETATAVYWRARKTL  685 (697)
Q Consensus       608 i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~-~~a~~vy~ral~~~  685 (697)
                      ...+++++.+....+-....++      +++.|.++.+.|+...+.++++...-+-.-...|.. +.+...........
T Consensus       194 ~~~~~~t~~~lng~A~~~l~~~------~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  194 SDKFGSTPKLLNGLAVCHLQLG------HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HCCS--SHHHHHHHHHHHHHCT-------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             HhccCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            8888888888888887888888      899999999999998888899999999988888888 55665555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.35  E-value=0.16  Score=51.71  Aligned_cols=86  Identities=10%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR  212 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR  212 (697)
                      ...+...|+..+..+|++.   ..+...++.....| +..+...|.+++..+|++   +..|+..+.... ..|+.+.|+
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~~~~A~  237 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGDTAKAK  237 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCCHHHHH
Confidence            3466678888888898872   44444444444445 567888899998888874   567777666664 678899999


Q ss_pred             HHHHHhhhhCCCCH
Q 005434          213 ALMQNGLRVCPTSE  226 (697)
Q Consensus       213 ~~~~r~l~~~p~~~  226 (697)
                      .+|++.++..|++.
T Consensus       238 ~~~~~vi~~yP~s~  251 (263)
T PRK10803        238 AVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHCcCCH
Confidence            99999999888864

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.18  E-value=1.6  Score=49.15  Aligned_cols=151  Identities=16%  Similarity=0.023  Sum_probs=101.7

Q ss_pred             HHhhCCCChhhHHHHHH--hhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHH--HHHHHHHHHhcCCccc
Q 005434          356 MQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFD--LYTKFLMDMIAPKKEE  430 (697)
Q Consensus       356 ~~~~~p~~~~~w~~~a~--~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~--~yi~~~~~~~~~~~~~  430 (697)
                      +....|.++..|..+-+  .++...          ..+....|+..|++|++.-|+.. .|.  ..+......+.  .. 
T Consensus       329 ~~~~~~~~~~Ay~~~lrg~~~~~~~----------~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~--~~-  395 (517)
T PRK10153        329 LQQGLPHQGAALTLFYQAHHYLNSG----------DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ--PL-  395 (517)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC--Cc-
Confidence            34556778788765533  333211          13668899999999999999753 111  11122221111  00 


Q ss_pred             ccCCCCCchhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434          431 TRDSELPSHVEHYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (697)
Q Consensus       431 ~~~~~~~~~~~~~~~~ar~~ye~al~~--~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (697)
                               ....+..+....++++..  ++..+.++...+-.....|++++|...+++|+ ...| +...|.....+.+
T Consensus       396 ---------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~p-s~~a~~~lG~~~~  464 (517)
T PRK10153        396 ---------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEM-SWLNYVLLGKVYE  464 (517)
T ss_pred             ---------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC-CHHHHHHHHHHHH
Confidence                     123456777777777664  66677888888888888899999999999999 7778 4666766666666


Q ss_pred             HhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          509 RCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      ..|          +.+++.+.|++|+..-|..
T Consensus       465 ~~G----------~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        465 LKG----------DNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HcC----------CHHHHHHHHHHHHhcCCCC
Confidence            666          3788999999999876643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.13  E-value=0.077  Score=43.52  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434          442 HYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~--~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      +..+.|...|++++...|.  +...|...+..+.+.|++++|..++++ . ...|.+..............+.       
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~~~~~~l~a~~~~~l~~-------   73 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPSNPDIHYLLARCLLKLGK-------   73 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHCHHHHHHHHHHHHHHTT--------
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCCHHHHHHHHHHHHHhCC-------
Confidence            5678999999999999885  466788889999999999999999988 5 5566665666555666666653       


Q ss_pred             ccchHHHHHHHHHH
Q 005434          520 KADILSIFELLKCI  533 (697)
Q Consensus       520 ~~~~~~~~~~f~~a  533 (697)
                         .+++.++|++|
T Consensus        74 ---y~eAi~~l~~~   84 (84)
T PF12895_consen   74 ---YEEAIKALEKA   84 (84)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcC
Confidence               67777777664

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.02  E-value=0.03  Score=37.20  Aligned_cols=33  Identities=12%  Similarity=0.128  Sum_probs=28.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 005434          179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR  212 (697)
Q Consensus       179 ~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR  212 (697)
                      .|++|+..+|+++..|..++.+.. ..|+.+.|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            378899999999999999999885 788888876

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=4.8  Score=42.65  Aligned_cols=128  Identities=15%  Similarity=0.089  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHHhhcCCchh-HHHHH--HHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc----HH
Q 005434          391 SQMQKAIQVYEEALKNVPSSM-IFDLY--TKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----ED  463 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~~-lw~~y--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~----~~  463 (697)
                      .+.+++...|+++|..-|... .-..+  .+-++..-. ..++.       -.++....+-+.|..||..+|.+    ..
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~-~gN~~-------fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE-RGNDA-------FKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh-hhhhH-------hhccchhHHHHHHHHhhcCCccccchhHH
Confidence            568899999999999887543 11111  111221100 01110       12467889999999999999975    56


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      ++..-+....+.|+..+|..-...|+ ...|.-..-...+..-.+..+          +.+.+.+-|++|++.-
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le----------~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALE----------KWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhc
Confidence            78888888899999999999999998 565554444455554444443          3566777788887643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=8.1  Score=42.26  Aligned_cols=96  Identities=14%  Similarity=0.073  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|-.|+...|.+.-|...-..-..+.+ +..+.+==.+++.++|..|+.|-.-..-.+ -.|+++.|...|..|
T Consensus        18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~-~lg~~~eA~~ay~~G   96 (539)
T KOG0548|consen   18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF-GLGDYEEAILAYSEG   96 (539)
T ss_pred             HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH-hcccHHHHHHHHHHH
Confidence            556778999999999998888766555444444 556656666788899999999987766654 689999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRME  236 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E  236 (697)
                      |...|++..|-......+
T Consensus        97 L~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   97 LEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hhcCCchHHHHHhHHHhh
Confidence            999999888877777665

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=94.59  E-value=6.5  Score=40.62  Aligned_cols=205  Identities=11%  Similarity=0.038  Sum_probs=118.1

Q ss_pred             hhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCC
Q 005434          301 VDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS  380 (697)
Q Consensus       301 ~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~  380 (697)
                      ..++....+..|..-|..|++--|+++.....-...|-.++.+   .-+-.=++..++.-|+=...-+..+...+.    
T Consensus        46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks---k~al~Dl~rVlelKpDF~~ARiQRg~vllK----  118 (504)
T KOG0624|consen   46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS---KAALQDLSRVLELKPDFMAARIQRGVVLLK----  118 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC---ccchhhHHHHHhcCccHHHHHHHhchhhhh----
Confidence            3445555677889999999998887754433333333344421   222223455566666522222222222222    


Q ss_pred             CCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHH---HHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434          381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM---DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (697)
Q Consensus       381 ~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~  456 (697)
                               .|.++.|..-|...|+..|+.. .-.++-++..   .+.....-.      .-...++...+.......++
T Consensus       119 ---------~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~------s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  119 ---------QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLK------SASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             ---------cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHH------HHhcCCchhhHHHHHHHHHh
Confidence                     5889999999999999988543 2222322211   100000000      00012445667777778888


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      ..|=+.+++..-++.+...|.+..|..=++.+- .--.+|.+....-.+|+-..|          +.+........||+.
T Consensus       184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs~DnTe~~ykis~L~Y~vg----------d~~~sL~~iRECLKl  252 (504)
T KOG0624|consen  184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLSQDNTEGHYKISQLLYTVG----------DAENSLKEIRECLKL  252 (504)
T ss_pred             cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccchHHHHHHHHHHHhhh----------hHHHHHHHHHHHHcc
Confidence            888888999999999999999998876665554 334456666665555555544          345555556677765


Q ss_pred             cC
Q 005434          537 VS  538 (697)
Q Consensus       537 ~p  538 (697)
                      -|
T Consensus       253 dp  254 (504)
T KOG0624|consen  253 DP  254 (504)
T ss_pred             Cc
Confidence            54

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.55  E-value=2  Score=44.25  Aligned_cols=124  Identities=12%  Similarity=0.015  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhC
Q 005434          523 ILSIFELLKCILTKVS----ALESESLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD  595 (697)
Q Consensus       523 ~~~~~~~f~~al~~~p----~~~~~~lW~~y~~~~~~~-~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~  595 (697)
                      ++.+.+.|++|+....    +.....+....++.++.. +  +.+...|++|...+...........+....+.+..+.|
T Consensus        90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen   90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence            3445555666655321    111233444445555444 3  45667777777766544210001112223455667889


Q ss_pred             CHHHHHHHHHHHHhCCCC----C--H-HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434          596 GIQQAREMYKRFLALPRP----G--L-VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       596 ~~~~AR~iy~~~i~~~p~----~--~-~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      .+++|.++|++.+..+-.    .  . .++...+-.-...+      ++..|+..|++..+.+|
T Consensus       170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~------D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG------DYVAARKALERYCSQDP  227 (282)
T ss_dssp             -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHGTTST
T ss_pred             CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCC
Confidence            999999999999875421    1  1 24455554555556      89999999999998887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.52  E-value=11  Score=43.34  Aligned_cols=139  Identities=15%  Similarity=0.037  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC-----C-CCC-------CCChHHHH--HHHHHHhCCHHHHHHHHH
Q 005434          543 ESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG-----G-GES-------GFSLPSAI--INLVIQKDGIQQAREMYK  605 (697)
Q Consensus       543 ~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~-----~-~~~-------~~~l~~~y--l~~~~~~~~~~~AR~iy~  605 (697)
                      ..||.-|.+|++..+  +.+-..|..|...+..-.     + .++       .......|  ...+...|++-+|-+.|.
T Consensus       912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            578998999999888  456677777766542100     0 001       11112223  122334577888888888


Q ss_pred             HHHh------CCCC---------------CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHh---------------
Q 005434          606 RFLA------LPRP---------------GLVLYQNCIELENNLASVGDKDSLVNARKLFESALA---------------  649 (697)
Q Consensus       606 ~~i~------~~p~---------------~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~---------------  649 (697)
                      +|-.      +|-.               ..++.....++|..-+      ...+|-.+|.+|=.               
T Consensus       992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen  992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG------YAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch------hhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence            7643      2211               1233444455665443      67777777766421               


Q ss_pred             --------hCC-CCchHHHHHHHHHHhcCChhhHHHH------HHHHHhhcCC
Q 005434          650 --------TYD-QNTSLWRDYYSTETKLGTSETATAV------YWRARKTLKD  687 (697)
Q Consensus       650 --------~~~-~~~~lW~~y~~fE~~~G~~~~a~~v------y~ral~~~~~  687 (697)
                              ..+ ++|.+....++|=.++.+.++|..+      |++|++-+.+
T Consensus      1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN 1118 (1416)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    112 5678999999998888888888775      5667766643

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.40  E-value=3.5  Score=41.14  Aligned_cols=108  Identities=17%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHH
Q 005434          583 LPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYY  662 (697)
Q Consensus       583 l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~  662 (697)
                      +..+|+.+..-.+.+..|.=||+.+-..+||.+.+....+-....++      +++.|-.+.+.|+...+++++.....+
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~------~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG------RYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc------CHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            56677777766667899999999999988888887777777777777      899999999999998888898888888


Q ss_pred             HHHHhcCChhhHHHHHHHHHhhcCCccccccCCC
Q 005434          663 STETKLGTSETATAVYWRARKTLKDSTALTALPD  696 (697)
Q Consensus       663 ~fE~~~G~~~~a~~vy~ral~~~~~~~~f~~~~~  696 (697)
                      -.=...|....+..=+-.-++....+..|+.-++
T Consensus       249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~  282 (299)
T KOG3081|consen  249 VLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLN  282 (299)
T ss_pred             HHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHH
Confidence            8877777775544433333444445556665443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.06  E-value=1.5  Score=40.00  Aligned_cols=118  Identities=19%  Similarity=0.033  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc---HHHHHH
Q 005434          391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---EDIAHR  467 (697)
Q Consensus       391 ~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~---~~lw~~  467 (697)
                      +....+...++.-++..|... +...+.+.......             ..+..+.|...|+.++...|..   +-.++.
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~-------------~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAY-------------EQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHH-------------HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            345556667777777766552 22233332221110             1366899999999999986443   346778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      .+.++...|++++|..+++..  ...|.....+....++....|          +.+.++..|++||
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g----------~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI--PDEAFKALAAELLGDIYLAQG----------DYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHhC
Confidence            899999999999999999663  234445667777777777776          4788999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.01  E-value=3.1  Score=46.79  Aligned_cols=152  Identities=10%  Similarity=-0.009  Sum_probs=99.9

Q ss_pred             hcCCCchHHHHHHHHHHHHccccC--cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHH
Q 005434          321 EALPSSFNLRQRFFEIVEATNLAQ--SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ  398 (697)
Q Consensus       321 ~~~p~~~~~~~~~~~~~~~fe~~~--~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~  398 (697)
                      ...|.+.+.+..|+.....+....  ....+..+++++++..|+....|-.++..+....... +    .....+..+..
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-~----~~~~~l~~a~~  405 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-P----LDEKQLAALST  405 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-C----ccHHHHHHHHH
Confidence            345677777777776654433211  2457778899999999999877766555432211100 0    01234566666


Q ss_pred             HHHHHhhc--CCc-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 005434          399 VYEEALKN--VPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL  475 (697)
Q Consensus       399 vye~al~~--~~~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~  475 (697)
                      ..++++..  .+. ...+....-.  ..                ..+..+.|...|++|+..+| +...|...+.++...
T Consensus       406 ~~~~a~al~~~~~~~~~~~ala~~--~~----------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~  466 (517)
T PRK10153        406 ELDNIVALPELNVLPRIYEILAVQ--AL----------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK  466 (517)
T ss_pred             HHHHhhhcccCcCChHHHHHHHHH--HH----------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence            66665553  222 2233333211  11                13568899999999999999 567888899999999


Q ss_pred             CCHHHHHHHHHHHhhccCCCcH
Q 005434          476 GKLDEARKLAAKLCSGKLSDSV  497 (697)
Q Consensus       476 ~~~~~A~~l~~~al~~~~P~~~  497 (697)
                      |++++|...+++|+ ...|..+
T Consensus       467 G~~~eA~~~~~~A~-~L~P~~p  487 (517)
T PRK10153        467 GDNRLAADAYSTAF-NLRPGEN  487 (517)
T ss_pred             CCHHHHHHHHHHHH-hcCCCCc
Confidence            99999999999999 7778754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.01  E-value=1.6  Score=41.14  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--------
Q 005434          140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--------  207 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~--------  207 (697)
                      ...+...|++++...|+.   ...|...+..+...| +..+...|.+++..+|.++..|...+.... ..|.        
T Consensus        51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~a~~~~  129 (172)
T PRK02603         51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH-KRGEKAEEAGDQ  129 (172)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHhHhhCH
Confidence            456678888888877654   356777777666666 578899999999999999888887777664 5555        


Q ss_pred             ------HHHHHHHHHHhhhhCCCC
Q 005434          208 ------VTAARALMQNGLRVCPTS  225 (697)
Q Consensus       208 ------~~~aR~~~~r~l~~~p~~  225 (697)
                            ...|..+++++++..|.+
T Consensus       130 ~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        130 DEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchh
Confidence                  355666666666666653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=93.89  E-value=1.1  Score=42.45  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (697)
Q Consensus       364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~  442 (697)
                      ...+..++..+..             .++++.|...|+++++..+... ....+...-.-..               ..+
T Consensus        35 a~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------~~g   86 (172)
T PRK02603         35 AFVYYRDGMSAQA-------------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------SNG   86 (172)
T ss_pred             HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------HcC
Confidence            3445566666653             4789999999999998655421 1122222211111               135


Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK  477 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~  477 (697)
                      ..+.|...|++|+...|.+...+..++..+...|.
T Consensus        87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            57899999999999999998888888888887766

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=93.65  E-value=1  Score=42.28  Aligned_cols=91  Identities=13%  Similarity=0.023  Sum_probs=59.9

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHH-
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET-  666 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~-  666 (697)
                      ....|.++.|...|.+++...|..   ...+...+.+....+      ..+.|...|++++...+.....|........ 
T Consensus        45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g------~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~  118 (168)
T CHL00033         45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG------EHTKALEYYFQALERNPFLPQALNNMAVICHY  118 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            345688888888888888765442   235666666666666      7888888999988887766666655555555 


Q ss_pred             ------hcCChhh-------HHHHHHHHHhhcCC
Q 005434          667 ------KLGTSET-------ATAVYWRARKTLKD  687 (697)
Q Consensus       667 ------~~G~~~~-------a~~vy~ral~~~~~  687 (697)
                            ..|+.+.       +..+|++++...|+
T Consensus       119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence                  5667664       44455555544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.54  E-value=1  Score=39.69  Aligned_cols=83  Identities=18%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             HhHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHHhcccC
Q 005434          441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---SVQLWLLRISVEIRCVTRN  514 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~---~~~lW~~~i~l~~~~~~~~  514 (697)
                      .+..++|...|++|+..++..   ...++.++..+...|++++|..++++++ ..+|+   +..++..+.......|.  
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~~p~~~~~~~l~~f~Al~L~~~gr--   90 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EEFPDDELNAALRVFLALALYNLGR--   90 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHHCCC--
Confidence            356789999999999986554   4689999999999999999999999999 78898   66677665544444443  


Q ss_pred             CCCCCccchHHHHHHHHHHH
Q 005434          515 SFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       515 ~~~~~~~~~~~~~~~f~~al  534 (697)
                              .+++.+.+..++
T Consensus        91 --------~~eAl~~~l~~l  102 (120)
T PF12688_consen   91 --------PKEALEWLLEAL  102 (120)
T ss_pred             --------HHHHHHHHHHHH
Confidence                    455555555544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.30  E-value=7.4  Score=37.88  Aligned_cols=130  Identities=15%  Similarity=0.115  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHH---
Q 005434          346 DDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYT---  417 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi---  417 (697)
                      ...+...++.+...||.+   +...+.+|..+..             .++.+.|...|++-++..|+..  -+-.|.   
T Consensus        21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-------------~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen   21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-------------QGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------------TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            456666677777777765   3345555555543             3667778888888887777654  111111   


Q ss_pred             -HHHHHHhc-CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH----------HHH-------HHHHHHHHhcCCH
Q 005434          418 -KFLMDMIA-PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----------DIA-------HRYVTLYLQLGKL  478 (697)
Q Consensus       418 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~----------~lw-------~~y~~l~~~~~~~  478 (697)
                       .+...... ....          -++....|...|+..+..-|.++          .+.       +.=++++.+.|.+
T Consensus        88 ~~~~~~~~~~~~~~----------D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y  157 (203)
T PF13525_consen   88 SYYKQIPGILRSDR----------DQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY  157 (203)
T ss_dssp             HHHHHHHHHH-TT-------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred             HHHHhCccchhccc----------ChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence             11110000 0001          13456678888888888877752          111       2236777888999


Q ss_pred             HHHHHHHHHHhhccCCCcHHH
Q 005434          479 DEARKLAAKLCSGKLSDSVQL  499 (697)
Q Consensus       479 ~~A~~l~~~al~~~~P~~~~l  499 (697)
                      ..|..-++..+ ..+|++...
T Consensus       158 ~aA~~r~~~v~-~~yp~t~~~  177 (203)
T PF13525_consen  158 KAAIIRFQYVI-ENYPDTPAA  177 (203)
T ss_dssp             HHHHHHHHHHH-HHSTTSHHH
T ss_pred             HHHHHHHHHHH-HHCCCCchH
Confidence            99998899999 789997443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.30  E-value=0.21  Score=32.60  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 005434          191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS  225 (697)
Q Consensus       191 ~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~  225 (697)
                      |.+|...+...+ ..|+++.|+..|+++++..|++
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            467888888886 7899999999999999999963

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=93.28  E-value=8.7  Score=41.69  Aligned_cols=151  Identities=13%  Similarity=0.012  Sum_probs=101.6

Q ss_pred             CCCch---HHH--HHHHHHHHHccccC--cHHHHHHHHHHHH---hhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434          323 LPSSF---NLR--QRFFEIVEATNLAQ--SDDMHDKILSDMQ---RDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (697)
Q Consensus       323 ~p~~~---~~~--~~~~~~~~~fe~~~--~~~~~~~il~~~~---~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~  392 (697)
                      -|.+.   +.|  ..++.....+....  ..+.+..++.+++   ...|+....+..+|.-++......  .  .+....
T Consensus       244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g--~--~~~~~~  319 (458)
T PRK11906        244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHG--K--SELELA  319 (458)
T ss_pred             CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhc--C--CCchHH
Confidence            35565   556  55554444432211  2356666799999   777777776666665554321100  0  002456


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005434          393 MQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY  472 (697)
Q Consensus       393 ~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~  472 (697)
                      ...|+..-++|++..+.+.    ++.+.......             ..+..+.+...|++|+..+|.+...|..++-++
T Consensus       320 ~~~a~~~A~rAveld~~Da----~a~~~~g~~~~-------------~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        320 AQKALELLDYVSDITTVDG----KILAIMGLITG-------------LSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCH----HHHHHHHHHHH-------------hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            7788888999998888753    33333332110             123378899999999999999999999999989


Q ss_pred             HhcCCHHHHHHHHHHHhhccCCC
Q 005434          473 LQLGKLDEARKLAAKLCSGKLSD  495 (697)
Q Consensus       473 ~~~~~~~~A~~l~~~al~~~~P~  495 (697)
                      .-.|+.++|+..+++|+ +-.|.
T Consensus       383 ~~~G~~~~a~~~i~~al-rLsP~  404 (458)
T PRK11906        383 FHNEKIEEARICIDKSL-QLEPR  404 (458)
T ss_pred             HHcCCHHHHHHHHHHHh-ccCch
Confidence            99999999999999999 77776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.07  E-value=1.9  Score=44.59  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=75.9

Q ss_pred             chHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~  466 (697)
                      .++++.|.+.++..-+...+..   +..+|+.+..+                  .+.+..+.-+|+......+.++.+..
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g------------------~e~~~~A~y~f~El~~~~~~t~~~ln  205 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG------------------GEKYQDAFYIFEELSDKFGSTPKLLN  205 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT------------------TTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHhccCCCHHHHH
Confidence            4789999999988654444332   55666655432                  12356789999997776667889998


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (697)
Q Consensus       467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (697)
                      ..+-..+..|++++|.+++..|+ ...|++++.....+-+....|.
T Consensus       206 g~A~~~l~~~~~~eAe~~L~~al-~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  206 GLAVCHLQLGHYEEAEELLEEAL-EKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHC-CC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999 7899999988887777766664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=92.97  E-value=14  Score=39.02  Aligned_cols=254  Identities=14%  Similarity=0.016  Sum_probs=152.0

Q ss_pred             chHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005434          174 GRMKKVLAQVIRFHPKV-PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE  252 (697)
Q Consensus       174 ~~~~~~~~ral~~~p~~-~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~  252 (697)
                      .++...+.++-+.-+++ -..-+.-++..+ ..|+.+.||.-.++.+...|.++.+-..-.+.....++........-..
T Consensus       135 ~~an~yL~eaae~~~~~~l~v~ltrarlll-~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         135 DRANRYLAEAAELAGDDTLAVELTRARLLL-NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHH-hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            47788888888774432 345666677776 7899999999999999999998877666665555444322211110000


Q ss_pred             ccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH
Q 005434          253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR  332 (697)
Q Consensus       253 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~  332 (697)
                      ..           ..           .+.            +.++.    .+.   ...-+.+.+.+...-.  .+-...
T Consensus       214 ~k-----------a~-----------~l~------------~~e~~----~le---~~a~~glL~q~~~~~~--~~gL~~  250 (400)
T COG3071         214 RK-----------AG-----------LLS------------DEEAA----RLE---QQAWEGLLQQARDDNG--SEGLKT  250 (400)
T ss_pred             HH-----------cc-----------CCC------------hHHHH----HHH---HHHHHHHHHHHhcccc--chHHHH
Confidence            00           00           000            00000    000   0011222222222110  011111


Q ss_pred             HHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhH
Q 005434          333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI  412 (697)
Q Consensus       333 ~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~l  412 (697)
                      +|+                   ...+.--++|.+-..+|.+.+.             .+..+.|..+.+++++..-+..+
T Consensus       251 ~W~-------------------~~pr~lr~~p~l~~~~a~~li~-------------l~~~~~A~~~i~~~Lk~~~D~~L  298 (400)
T COG3071         251 WWK-------------------NQPRKLRNDPELVVAYAERLIR-------------LGDHDEAQEIIEDALKRQWDPRL  298 (400)
T ss_pred             HHH-------------------hccHHhhcChhHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhccChhH
Confidence            111                   1111112446666677777664             57788999999999988766653


Q ss_pred             HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 005434          413 FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK  492 (697)
Q Consensus       413 w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~  492 (697)
                      .. ++....                   .++.+......++.+...|.+|.++.....+..+++...+|...++.|++  
T Consensus       299 ~~-~~~~l~-------------------~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--  356 (400)
T COG3071         299 CR-LIPRLR-------------------PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--  356 (400)
T ss_pred             HH-HHhhcC-------------------CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--
Confidence            22 222211                   12345667777888888999999999999999999999999999999993  


Q ss_pred             CCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434          493 LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (697)
Q Consensus       493 ~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~  535 (697)
                      .-.+..-|....+.....|.          .+.+.+++++++.
T Consensus       357 ~~~s~~~~~~la~~~~~~g~----------~~~A~~~r~e~L~  389 (400)
T COG3071         357 LRPSASDYAELADALDQLGE----------PEEAEQVRREALL  389 (400)
T ss_pred             cCCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHH
Confidence            34455666666666666653          5777788888875

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.51  E-value=26  Score=40.93  Aligned_cols=122  Identities=12%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 005434          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSMIFDLYTKFLMDMIA  425 (697)
Q Consensus       347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~-~~~lw~~yi~~~~~~~~  425 (697)
                      ..+-+-+.++++.||+.+..-..-|-....             .|+.+.|..+ -+++...+ ++.+--..+.+   .+.
T Consensus        26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r-------------~gk~~ea~~~-Le~~~~~~~~D~~tLq~l~~---~y~   88 (932)
T KOG2053|consen   26 KKALAKLGKLLKKHPNALYAKVLKALSLFR-------------LGKGDEALKL-LEALYGLKGTDDLTLQFLQN---VYR   88 (932)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-------------hcCchhHHHH-HhhhccCCCCchHHHHHHHH---HHH
Confidence            345555678888899876553333333222             2445555533 34444332 32221122222   221


Q ss_pred             CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc-HHHHH
Q 005434          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-VQLWL  501 (697)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~-~~lW~  501 (697)
                                    ..+..+++..+|++|+.++|. +++-..|..-+.+.+++.+-.++--+.- ..+|+. .-+|.
T Consensus        89 --------------d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly-K~~pk~~yyfWs  149 (932)
T KOG2053|consen   89 --------------DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY-KNFPKRAYYFWS  149 (932)
T ss_pred             --------------HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCcccchHHH
Confidence                          135578899999999999998 6666565555666666665444443333 456765 35554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=92.50  E-value=5  Score=39.07  Aligned_cols=150  Identities=9%  Similarity=-0.039  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHHHHhccc
Q 005434          442 HYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ-----LWLLRISVEIRCVTR  513 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~-----lW~~~i~l~~~~~~~  513 (697)
                      ++...|...|+..+...|.+   ++..+..+.-+-..|+++.|...+++.+ ..+|++..     .+.....+....+..
T Consensus        19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi-~~yP~~~~~~~A~Y~~g~~~~~~~~~~~   97 (203)
T PF13525_consen   19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI-KLYPNSPKADYALYMLGLSYYKQIPGIL   97 (203)
T ss_dssp             T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHhCccch
Confidence            56788999999998876664   5666666666778999999999999999 78998632     122222222111100


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHH-HHHHHH
Q 005434          514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSA-IINLVI  592 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~-yl~~~~  592 (697)
                       ....+.+....+...|+..+...|.+....-=..++..       ++..+..                 ... -..|..
T Consensus        98 -~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~-------l~~~la~-----------------~e~~ia~~Y~  152 (203)
T PF13525_consen   98 -RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE-------LRNRLAE-----------------HELYIARFYY  152 (203)
T ss_dssp             --TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-------HHHHHHH-----------------HHHHHHHHHH
T ss_pred             -hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH-------HHHHHHH-----------------HHHHHHHHHH
Confidence             00011223556777888888888865422111111110       1110000                 011 245666


Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVL  617 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~  617 (697)
                      +.|.+..|..-|+.++...|.+...
T Consensus       153 ~~~~y~aA~~r~~~v~~~yp~t~~~  177 (203)
T PF13525_consen  153 KRGKYKAAIIRFQYVIENYPDTPAA  177 (203)
T ss_dssp             CTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCCchH
Confidence            7889999999999999988877553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.29  E-value=1.4  Score=44.13  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=22.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                      .++..+..+..+.+.|+.++|+.+++..+ ..+|++
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~-k~YP~t  248 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVI-KRYPGT  248 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHCCCC
Confidence            35555666666666667777777777766 566664

>PRK15331 chaperone protein SicA; Provisional

Probab=92.12  E-value=0.95  Score=41.97  Aligned_cols=83  Identities=7%  Similarity=0.022  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+..+|.-.+...|.+.+.|+..+..+...+ +.++...|..|..+.+++|..-...+.-.+ ..|+...|+..|+-+
T Consensus        53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l-~l~~~~~A~~~f~~a  131 (165)
T PRK15331         53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL-LMRKAAKARQCFELV  131 (165)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH-HhCCHHHHHHHHHHH
Confidence            456778999999999999999999999887766 789999999999999999888777777666 789999999999999


Q ss_pred             hhhCCC
Q 005434          219 LRVCPT  224 (697)
Q Consensus       219 l~~~p~  224 (697)
                      +. .|.
T Consensus       132 ~~-~~~  136 (165)
T PRK15331        132 NE-RTE  136 (165)
T ss_pred             Hh-Ccc
Confidence            98 454

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=12  Score=38.84  Aligned_cols=64  Identities=14%  Similarity=0.153  Sum_probs=36.3

Q ss_pred             HHHHHhcCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434          166 EFCRQRKNGRMKKVLAQVIRFHPK---VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (697)
Q Consensus       166 ~~~~~~~~~~~~~~~~ral~~~p~---~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y  232 (697)
                      +|..+..+..++.+++-.+...-.   +.++|+.++.|.+   |+.+.|-..|.-......-..++|+..
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnL   97 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL---GDYEEALNVYTFLMNKDDAPAELGVNL   97 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh---ccHHHHHHHHHHHhccCCCCcccchhH
Confidence            444544566667776666643322   3467777777653   677777777766655332223455443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.34  E-value=28  Score=38.82  Aligned_cols=45  Identities=16%  Similarity=0.268  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCS  490 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~  490 (697)
                      .++.+...++   ..++.+..+-..+++.+-+.|++++|.+||+..++
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k  138 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK  138 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3566666666   34566777888899999999999999999999883

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=91.02  E-value=6.2  Score=40.64  Aligned_cols=90  Identities=13%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             HHHh-CCHHHHHHHHHHHHhCCCC--C----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-------h
Q 005434          591 VIQK-DGIQQAREMYKRFLALPRP--G----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-------S  656 (697)
Q Consensus       591 ~~~~-~~~~~AR~iy~~~i~~~p~--~----~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-------~  656 (697)
                      +... ++++.|.+.|++|+.....  +    .......+.+...++      +.+.|-++|+++...+-.++       +
T Consensus       124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~------~y~~A~~~~e~~~~~~l~~~l~~~~~~~  197 (282)
T PF14938_consen  124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG------RYEEAIEIYEEVAKKCLENNLLKYSAKE  197 (282)
T ss_dssp             HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            3345 7999999999999985321  1    347788889988888      99999999999998654211       4


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          657 LWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       657 lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      .++.-+-.-...||+..|+..+++.....|
T Consensus       198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  198 YFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455444455557999999999999876653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.83  E-value=5.8  Score=42.02  Aligned_cols=124  Identities=12%  Similarity=-0.011  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-------------HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-------------lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~  456 (697)
                      .+++..|..-|++|+..+....             .-..++++..-+               ...+....|....++++.
T Consensus       221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~---------------lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY---------------LKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH---------------HhhhhHHHHHHHHHHHHh
Confidence            4678889999999988765221             011111111111               122445678888899999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      .+|.+.+....-++-++..|.++.|+..+.+++ +..|.|..+=...+.+-.+...         ..++-+++|.+.+..
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~l~~k~~~---------~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIKLKQKIRE---------YEEKEKKMYANMFAK  355 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhc
Confidence            999999988888888999999999999999999 7899998877777766655432         124445667777665


Q ss_pred             cC
Q 005434          537 VS  538 (697)
Q Consensus       537 ~p  538 (697)
                      .+
T Consensus       356 ~~  357 (397)
T KOG0543|consen  356 LA  357 (397)
T ss_pred             cc
Confidence            43

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=90.67  E-value=40  Score=39.47  Aligned_cols=167  Identities=17%  Similarity=0.165  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhh-HHHHHHhhcccCCCCCCCCcC
Q 005434          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY-WDWLARLKMTDSVSKDGTSED  387 (697)
Q Consensus       309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~-w~~~a~~~l~~~~~~~~~~~~  387 (697)
                      ++.|..+|++|++..|+ .++...+|..+.+-.   .....+++-=++-+.+|+++-. |....-+.....+. .+.   
T Consensus        93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~---~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~-~~~---  164 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREK---SYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSE-NEL---  164 (932)
T ss_pred             hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCC-ccc---
Confidence            45778888888888888 677777777776532   2234444444566788888554 54333222211110 000   


Q ss_pred             ccchHHHHHHHHHHHHhhcC---CchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc--CCCcH
Q 005434          388 IVPSQMQKAIQVYEEALKNV---PSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM--GCLTE  462 (697)
Q Consensus       388 ~~~~~~~~a~~vye~al~~~---~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~--~~~~~  462 (697)
                      ...--+--|....+.-++.-   .+..-...|....+.                  .+..++|..++..-+..  -+.++
T Consensus       165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~------------------~~k~~eal~~l~~~la~~l~~~~~  226 (932)
T KOG2053|consen  165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL------------------QGKYQEALEFLAITLAEKLTSANL  226 (932)
T ss_pred             ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHHHhccccch
Confidence            00011223444444444332   122222334333332                  12244555555332221  12233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                      .+=..-.+++...++..+..++..+++ ...|++   |..|++
T Consensus       227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll-~k~~Dd---y~~~~~  265 (932)
T KOG2053|consen  227 YLENKKLDLLKLLNRWQELFELSSRLL-EKGNDD---YKIYTD  265 (932)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHH-HhCCcc---hHHHHH
Confidence            444455677777888888888888888 666766   444444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.32  E-value=28  Score=37.14  Aligned_cols=173  Identities=12%  Similarity=-0.034  Sum_probs=82.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hH---
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SE---  543 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~---  543 (697)
                      -++.+.-.|++++|.++.-..+ +-.+.+.+--..+-... .+..         +.+....-|+++|+.-|... +.   
T Consensus       175 ka~cl~~~~~~~~a~~ea~~il-kld~~n~~al~vrg~~~-yy~~---------~~~ka~~hf~qal~ldpdh~~sk~~~  243 (486)
T KOG0550|consen  175 KAECLAFLGDYDEAQSEAIDIL-KLDATNAEALYVRGLCL-YYND---------NADKAINHFQQALRLDPDHQKSKSAS  243 (486)
T ss_pred             hhhhhhhcccchhHHHHHHHHH-hcccchhHHHHhccccc-cccc---------chHHHHHHHhhhhccChhhhhHHhHh
Confidence            3667777899999988877777 45555433221111111 1111         35666667889887655322 21   


Q ss_pred             ------HHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH---HHhCCHHHHHHHHHHHHhCCC
Q 005434          544 ------SLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV---IQKDGIQQAREMYKRFLALPR  612 (697)
Q Consensus       544 ------~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~---~~~~~~~~AR~iy~~~i~~~p  612 (697)
                            ..|..-.+-.-..+  ..+...|..|+.+-+.     +.......|..-.   .+.|....|..--+.++++.|
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence                  22221111111111  1233445555433111     1333344454432   244666666666666666554


Q ss_pred             CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434          613 PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS  663 (697)
Q Consensus       613 ~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~  663 (697)
                      .-++-++.-+.=...++      +.+.|..-|+.|++.-.+ +++=..+.+
T Consensus       319 syikall~ra~c~l~le------~~e~AV~d~~~a~q~~~s-~e~r~~l~~  362 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALE------KWEEAVEDYEKAMQLEKD-CEIRRTLRE  362 (486)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence            43333322222222222      566777777777765433 433333333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=90.07  E-value=1.2  Score=47.97  Aligned_cols=69  Identities=9%  Similarity=-0.063  Sum_probs=61.2

Q ss_pred             hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434          153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGV---WIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (697)
Q Consensus       153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~l---W~~~a~~e~~~~~~~~~aR~~~~r~l~~~  222 (697)
                      ..|++...|......+.+.+ ++.+...|+++|.++|+++..   |...+.... ..|+++.|...|++++...
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence            57999999999999888877 689999999999999999854   888877775 7999999999999999973

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.06  E-value=1.1  Score=40.53  Aligned_cols=53  Identities=17%  Similarity=0.056  Sum_probs=46.9

Q ss_pred             CchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH
Q 005434          173 NGRMKKVLAQVIRFHPKV-----PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL  228 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~-----~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l  228 (697)
                      +..+.+.|+.....+|-.     .+||+.++.|.   .++.+.|...++|-++.||+|+.+
T Consensus        26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCCCc
Confidence            678999999999999975     37999999875   689999999999999999998864

>PRK15331 chaperone protein SicA; Provisional

Probab=89.99  E-value=3.4  Score=38.37  Aligned_cols=85  Identities=6%  Similarity=-0.026  Sum_probs=48.5

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE  672 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (697)
                      ..|.++.|..+|.-++-..|.+..+|+..+.....++      +.+.|-.+|..|......+|.....-.+--...|+.+
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k------~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK------QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence            4566666666666666666666666666665555555      5666666666666554444432222333334456666


Q ss_pred             hHHHHHHHHHh
Q 005434          673 TATAVYWRARK  683 (697)
Q Consensus       673 ~a~~vy~ral~  683 (697)
                      .|+..|+-++.
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            66666666555

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.95  E-value=0.68  Score=30.11  Aligned_cols=34  Identities=21%  Similarity=0.139  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                      ++.|...+..+...|++++|++.+++++ ...|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al-~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL-ELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHCcCC
Confidence            4678899999999999999999999999 777763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=89.95  E-value=0.66  Score=46.77  Aligned_cols=52  Identities=23%  Similarity=0.155  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      +.++|-.+|++|+...|+++++.+.|.+|-+.+.++-.|..+|-+|+..-|.
T Consensus       131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~  182 (472)
T KOG3824|consen  131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG  182 (472)
T ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence            6777777888887777777777777888777777777777777777766553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=89.75  E-value=6  Score=34.89  Aligned_cols=85  Identities=15%  Similarity=0.031  Sum_probs=63.7

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC---cHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIA  465 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~---~~~lw  465 (697)
                      .|+.++|...|++++..-.+.. .-..++.+--..-               ..+..+.+..+++.++...|.   +..+.
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------NLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            4789999999999999654432 3334443321110               136689999999999998777   77888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          466 HRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       466 ~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      ..++-.+...|+.++|...+-.++
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            889988999999999988887766

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=89.41  E-value=11  Score=37.96  Aligned_cols=91  Identities=12%  Similarity=-0.007  Sum_probs=62.3

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH-----HHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLV-----LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL-----WRD  660 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~-----~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l-----W~~  660 (697)
                      ....|++++|...|++++...|.+..     +++.++.  ...+      +.+.|...|++.+..+|+++.+     -+.
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ay--y~~~------~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAY--YKNA------DLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH--HhcC------CHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            34679999999999999998887643     3444443  4455      8999999999999999966522     111


Q ss_pred             HHHHHHh-------------cCCh---hhHHHHHHHHHhhcCCcc
Q 005434          661 YYSTETK-------------LGTS---ETATAVYWRARKTLKDST  689 (697)
Q Consensus       661 y~~fE~~-------------~G~~---~~a~~vy~ral~~~~~~~  689 (697)
                      .+.+...             ..|.   ..|..-+++.++.+|++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            1212211             1122   356688899999998774

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.40  E-value=3.6  Score=41.30  Aligned_cols=89  Identities=11%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHH
Q 005434          593 QKDGIQQAREMYKRFLALPRPGL-----VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYST  664 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~-----~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~f  664 (697)
                      ..|++..|...|..++...|.+.     .+|+.=..+  .++      +.+.|-.+|..+++.+|++   ++..+.-..-
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y--~qg------~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY--AQG------DYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH--hcc------cchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            45678888888888888777653     355443333  445      7788888888888888843   4777777777


Q ss_pred             HHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          665 ETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       665 E~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      ..+.|+.+.|..+++..++..|+..
T Consensus       225 ~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            7788888888888888888887653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.29  E-value=39  Score=37.26  Aligned_cols=133  Identities=17%  Similarity=0.089  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHHHhhcCCchhH---------------HHHHHHHHHHHhcC-CcccccCCCCCchhHhHHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMI---------------FDLYTKFLMDMIAP-KKEETRDSELPSHVEHYISHLLTVYEK  453 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~l---------------w~~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ar~~ye~  453 (697)
                      .+..+.|+..|+++|...-+..+               -.+|+..+...-.. .+++       ....++...|...|.+
T Consensus       311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne-------~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE-------AFKKGDYPEAVKHYTE  383 (539)
T ss_pred             HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH-------HHhccCHHHHHHHHHH
Confidence            36788899999999886544221               11233222210000 0000       0123567889999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (697)
Q Consensus       454 al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a  533 (697)
                      ||..+|.++.++++-+-.+.+.|++..|.+=.+.++ ...|+....|.+-...+....          +.+++.+.|+++
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i-eL~p~~~kgy~RKg~al~~mk----------~ydkAleay~ea  452 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI-ELDPNFIKAYLRKGAALRAMK----------EYDKALEAYQEA  452 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence            999999999999999999999999999999899999 789999999988765554443          357777889999


Q ss_pred             HhhcChh
Q 005434          534 LTKVSAL  540 (697)
Q Consensus       534 l~~~p~~  540 (697)
                      +..-|..
T Consensus       453 le~dp~~  459 (539)
T KOG0548|consen  453 LELDPSN  459 (539)
T ss_pred             HhcCchh
Confidence            8766543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.44  E-value=8.2  Score=40.93  Aligned_cols=100  Identities=13%  Similarity=0.056  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHhcCCC----HHH--------HHHHHHH---HHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGD----IEL--------WFKYMEF---CRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~----~~l--------W~~y~~~---~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~  203 (697)
                      ...+..-|+||+.-+..+    .+-        -..|++.   +.+.+ +..+....+++|...|++++.-+.-++-.+ 
T Consensus       224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-  302 (397)
T KOG0543|consen  224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-  302 (397)
T ss_pred             HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-
Confidence            456667888888765522    110        1122222   12223 567888899999999999998888888876 


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHH
Q 005434          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL  240 (697)
Q Consensus       204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~  240 (697)
                      ..|.++.||..|+++++..|.+..+=.+++++-...-
T Consensus       303 ~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  303 ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            7899999999999999999999988888888765443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=87.39  E-value=34  Score=34.34  Aligned_cols=151  Identities=7%  Similarity=-0.012  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHH-HHHHHHHHH--Hhc----
Q 005434          442 HYISHLLTVYEKAEAMGCLTED---IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL-WLLRISVEI--RCV----  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~---lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l-W~~~i~l~~--~~~----  511 (697)
                      ++.+.|...|+..+...|.++-   .....+..+.+.+++++|...+++.+ ..+|+++.+ +..|..-..  ..+    
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi-~~~P~~~~~~~a~Y~~g~~~~~~~~~~~  124 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVLYMRGLTNMALDDSAL  124 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence            5578899999999999887642   22334445667899999999999999 788886332 111111110  000    


Q ss_pred             ----ccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHH
Q 005434          512 ----TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAI  587 (697)
Q Consensus       512 ----~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y  587 (697)
                          .......+.+....+.+.|++-++..|.+...+.=..++..+          -++..    ..     ..    ..
T Consensus       125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l----------~~~la----~~-----e~----~i  181 (243)
T PRK10866        125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL----------KDRLA----KY-----EL----SV  181 (243)
T ss_pred             hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH----------HHHHH----HH-----HH----HH
Confidence                000000011123345578888888888654222111111111          11100    00     00    11


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhCCCCCHH
Q 005434          588 INLVIQKDGIQQAREMYKRFLALPRPGLV  616 (697)
Q Consensus       588 l~~~~~~~~~~~AR~iy~~~i~~~p~~~~  616 (697)
                      ..+..+.|....|-.=++.++...|.+..
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~  210 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQA  210 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence            34456678888888889999988776644

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.00  E-value=7.3  Score=36.73  Aligned_cols=94  Identities=13%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----c------CchHHHHHHHHHHhCCCCHH-HHHHHHHH---HH-
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQR-----K------NGRMKKVLAQVIRFHPKVPG-VWIYAAAW---EF-  202 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~-----~------~~~~~~~~~ral~~~p~~~~-lW~~~a~~---e~-  202 (697)
                      +.++++.-++....++|.|.+.+..+.--+...     +      .+.+..-|+.||.++|+... +|..-..+   -. 
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            466778899999999999999888887765432     1      24567889999999999754 55532221   10 


Q ss_pred             -----HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          203 -----DHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       203 -----~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                           +....++.|...|++|+...|++ .++..-+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksL  120 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSL  120 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHH
Confidence                 01134778889999999999986 3443333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=86.51  E-value=3.8  Score=44.32  Aligned_cols=48  Identities=8%  Similarity=-0.058  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDI---AHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~l---w~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      +..+.|...|++|++.+|.+.+.   |...+..+...|++++|...+++|+
T Consensus        89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56788899999999988888754   8888888888899999999999988

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=86.43  E-value=8.3  Score=34.25  Aligned_cols=85  Identities=18%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHH---HHHHhc
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYY---STETKL  668 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~---~fE~~~  668 (697)
                      +.|.++.|.+.|.++|..+|.....|..-++--.-++      +.+.|-+-.++|++.-+ ....-...|+   -+=+..
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~------~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG------DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC------ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            4577888888888888888887777776665555555      66777777888887766 3333333333   345557


Q ss_pred             CChhhHHHHHHHHHh
Q 005434          669 GTSETATAVYWRARK  683 (697)
Q Consensus       669 G~~~~a~~vy~ral~  683 (697)
                      |+-+.|+.=|++|.+
T Consensus       129 g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQ  143 (175)
T ss_pred             CchHHHHHhHHHHHH
Confidence            888888888877753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.27  E-value=12  Score=33.92  Aligned_cols=90  Identities=11%  Similarity=0.026  Sum_probs=56.1

Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCch-----HHHHH
Q 005434          592 IQKDGIQQAREMYKRFLALPRPG-----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS-----LWRDY  661 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~-----~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~-----lW~~y  661 (697)
                      .+.|++++|.+.|+......|.+     .++.+.|+.+.  .+      +.+.|...|++-++.+|+++.     .-...
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~--~~------~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK--QG------DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH--cc------CHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            35677888888888877776654     34566666554  23      677888888888888885541     22223


Q ss_pred             HHHHHh-------------cCChhhHHHHHHHHHhhcCCcc
Q 005434          662 YSTETK-------------LGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       662 ~~fE~~-------------~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      +.|+..             .+....|..-+++.++.+|++.
T Consensus        93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            334432             2335567777777777777663

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=85.54  E-value=54  Score=34.84  Aligned_cols=286  Identities=13%  Similarity=0.036  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhc
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIA  425 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~  425 (697)
                      ...+++.+.+..+ +.+.|.+-+..|-.--.            ..++.+++-....++-+.-++..+ ..++...+-.+.
T Consensus       100 ~~qAEkl~~rnae-~~e~p~l~~l~aA~AA~------------qrgd~~~an~yL~eaae~~~~~~l-~v~ltrarlll~  165 (400)
T COG3071         100 FQQAEKLLRRNAE-HGEQPVLAYLLAAEAAQ------------QRGDEDRANRYLAEAAELAGDDTL-AVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHHhhh-cCcchHHHHHHHHHHHH------------hcccHHHHHHHHHHHhccCCCchH-HHHHHHHHHHHh
Confidence            4556666655333 34445554443332211            146778888888887766444432 223333332221


Q ss_pred             CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHH---
Q 005434          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL---  502 (697)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~---  502 (697)
                                     +++...|+.-...++...|..+.+-.--.+.+.+.|+..+...++.+.-++..-++++.=..   
T Consensus       166 ---------------~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~  230 (400)
T COG3071         166 ---------------RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ  230 (400)
T ss_pred             ---------------CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence                           34567889889999999999999998899999999999999888877764433333221110   


Q ss_pred             -HHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCC
Q 005434          503 -RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGG  577 (697)
Q Consensus       503 -~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~--~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~  577 (697)
                       +.-+.-...+       .++.+.+    ....+.+|.+.  ...|=..|+..+...+  +.+..+.+.+++..-     
T Consensus       231 a~~glL~q~~~-------~~~~~gL----~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-----  294 (400)
T COG3071         231 AWEGLLQQARD-------DNGSEGL----KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-----  294 (400)
T ss_pred             HHHHHHHHHhc-------cccchHH----HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-----
Confidence             1111111111       1122332    22333344321  3556667777776655  456666666664211     


Q ss_pred             CCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434          578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL  657 (697)
Q Consensus       578 ~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l  657 (697)
                        .+.+ ..++..+ .-++...--+.-++.++..|.+..++...-.|-.+.+      ...+|+..|+.|+..-+ +..-
T Consensus       295 --D~~L-~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~------~w~kA~~~leaAl~~~~-s~~~  363 (400)
T COG3071         295 --DPRL-CRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK------LWGKASEALEAALKLRP-SASD  363 (400)
T ss_pred             --ChhH-HHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh------HHHHHHHHHHHHHhcCC-Chhh
Confidence              1222 1222222 3466777777888888888888888888777777776      88999999999997654 4444


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          658 WRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       658 W~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      |..-+.--...|++..|.++++.|+..+-.
T Consensus       364 ~~~la~~~~~~g~~~~A~~~r~e~L~~~~~  393 (400)
T COG3071         364 YAELADALDQLGEPEEAEQVRREALLLTRQ  393 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence            555566666799999999999999966543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.14  E-value=2.3  Score=27.63  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434          191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (697)
Q Consensus       191 ~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~  224 (697)
                      +.+|...+.... ..|+++.|-..|+++|+..|+
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence            467888888775 789999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=85.05  E-value=4.5  Score=36.82  Aligned_cols=59  Identities=8%  Similarity=-0.045  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434          162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (697)
Q Consensus       162 ~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~  221 (697)
                      ...++.+...| +..+..+..+++..+|.+..+|...+.... ..|+...|..+|++..+.
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHH
Confidence            33344344444 456677777777777777777777777764 677777777777666443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.15  E-value=77  Score=35.51  Aligned_cols=102  Identities=21%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHH-HHHhccCCCCCcccHHHHHHHHHHHHhhCC---C
Q 005434          584 PSAIINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCI-ELENNLASVGDKDSLVNARKLFESALATYD---Q  653 (697)
Q Consensus       584 ~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i-~lE~~~~~~~~~~~~~raR~lye~al~~~~---~  653 (697)
                      ...-+......|+.+.|-.++...+...-.+      .+-...+| .|-...+      +.+.+-+++..|+....   +
T Consensus       379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~------~~~~a~~vl~~Ai~~~~~~~t  452 (652)
T KOG2376|consen  379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK------DNDSASAVLDSAIKWWRKQQT  452 (652)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc------CCccHHHHHHHHHHHHHHhcc
Confidence            3344566677899999999999554321110      01112222 2333333      44567788888887554   1


Q ss_pred             ----CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcccc
Q 005434          654 ----NTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTAL  691 (697)
Q Consensus       654 ----~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~~f  691 (697)
                          ...+|..-+.|+.++|+.+.|..+++..++..++.++.
T Consensus       453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~  494 (652)
T KOG2376|consen  453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL  494 (652)
T ss_pred             cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence                12789999999999999999999999999987766543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=82.92  E-value=1.9  Score=27.64  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       465 w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                      ....+..+...|+.++|..++++.+ ..+|+|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~-~~~P~s   33 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLI-KRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHH-HHSTTS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH-HHCcCC
Confidence            3445666677899999999999999 789975

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=81.70  E-value=2.9  Score=42.35  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=53.6

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (697)
                      ++..++|..+|+.|+...|.++++.+.|..|.+.++++-+|.+.|-+|+ ..-|.+.+...
T Consensus       129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL-tisP~nseALv  188 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL-TISPGNSEALV  188 (472)
T ss_pred             ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee-eeCCCchHHHh
Confidence            4678999999999999999999999999999999999999999999999 78887655443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=81.19  E-value=3.1  Score=26.98  Aligned_cols=32  Identities=9%  Similarity=0.038  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434          192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (697)
Q Consensus       192 ~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~  224 (697)
                      .+|...+.... ..|+++.|...|+++++..|+
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence            57888888885 799999999999999998884

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=80.19  E-value=50  Score=33.09  Aligned_cols=79  Identities=18%  Similarity=0.074  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH-HHHHH
Q 005434          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP---GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE-LWVEY  232 (697)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~---~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~-lW~~y  232 (697)
                      .+.|.+=+.-....| ...+.+-|+.....||..|   +.=++.+.-.+ ..++.+.|+..++|-++.+|+|++ -|..|
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            334433333334445 5789999999999999865   55555555555 689999999999999999999874 57777


Q ss_pred             HHHHH
Q 005434          233 LRMEL  237 (697)
Q Consensus       233 ~~~E~  237 (697)
                      ++-..
T Consensus       113 lkgLs  117 (254)
T COG4105         113 LKGLS  117 (254)
T ss_pred             HHHHH
Confidence            76654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	697
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-13
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-08
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-11
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	5e-10
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	1e-05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-06
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	9e-05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.8 bits (201), Expect = 4e-16
 Identities = 91/637 (14%), Positives = 201/637 (31%), Gaps = 158/637 (24%)

Query: 44  DVVQYRLERMVDELD--DLE--RRGLFTRHEISEIVKQ-------RRKFEYRLKRPSPLK 92
           D++    +  VD  D  D++   + + ++ EI  I+          R F   L +   + 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 93  QDYLAYI---EYESQLDALR-RLRKKSIGRDEGRERRVSKKMKKSVSDFS--GVARILEI 146
           Q ++  +    Y+  +  ++   R+ S+      E+R   ++      F+   V+R+   
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPY 137

Query: 147 YRL--AVMRFKGDIELWFKYMEFCRQRKNGRMKKVLA-QVIRFHPKVP----GV-WIYAA 198
            +L  A++  +    +    +        G  K  +A  V   +         + W+   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS-----G--KTWVALDVCLSYKVQCKMDFKIFWL--- 187

Query: 199 AWEFDHNL-NVTAARALMQNGLRVC-------------PTSEELWVEYLRMELTYLNKLK 244
                 NL N  +   +++   ++               ++ +L +  ++ EL  L K K
Sbjct: 188 ------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 245 ARKVALGEDKGTLVRDH-RDADEKRWINEN-KGLFMPLDGEVENT-DGSQPENMESQKSV 301
             +  L      LV  + ++A      N + K L      +V +    +   ++      
Sbjct: 242 PYENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 302 DLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF 360
                ++   +L        + LP          E++       S      I+++  RD 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRRLS------IIAESIRDG 340

Query: 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK---AIQVYEEALKNVPSSMIFDLYT 417
           L     W  +   K+T  +    +   + P++ +K    + V+  +  ++P+ ++  ++ 
Sbjct: 341 LATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWF 397

Query: 418 KFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY-LQL- 475
                     K +                   V  K      + +      +++  + L 
Sbjct: 398 D-------VIKSDVMV----------------VVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 476 --GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL---L 530
              KL+    L   +      D   +         +    +   P   D      +   L
Sbjct: 435 LKVKLENEYALHRSIV-----DHYNI--------PKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 531 KCILTKVSALESESLWLMALKF----FMNQKHYFDKLVEIALISVAKDGGGESGFSLPSA 586
           K      +    E + L  + F    F+ QK        I   S A +  G    S+ + 
Sbjct: 482 K------NIEHPERMTLFRMVFLDFRFLEQK--------IRHDSTAWNASG----SILNT 523

Query: 587 IINLVIQKDGIQQAREMYKRFLA-----LPRPGLVLY 618
           +  L   K  I      Y+R +      LP+    L 
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 59/404 (14%), Positives = 118/404 (29%), Gaps = 118/404 (29%)

Query: 340 TNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV--PSQMQKAI 397
               +    +  ILS  +  F+ +   +D      M  S+      + I+     +   +
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 398 QVYEEALKNVPSSMIFDL--------YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449
           +++   L +    M+           Y KFLM  I   K E R   + +    YI     
Sbjct: 66  RLF-WTLLSKQEEMVQKFVEEVLRINY-KFLMSPI---KTEQRQPSMMT--RMYIEQRDR 118

Query: 450 VY--------------EKAEAM-GCLTEDIAHRYVTLYLQLGKLDEARK--LAAKLCSGK 492
           +Y              +    +   L E    + V +   LG    + K  +A  +C   
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SGKTWVALDVCL-- 172

Query: 493 LSDSVQL-------WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL 545
            S  VQ        W   +++      +N  SP    +L + + L   +       S+  
Sbjct: 173 -SYKVQCKMDFKIFW---LNL------KNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 546 ---------WLMALKFFMNQKHY------------------FD---K-LVEIALISVAKD 574
                        L+  +  K Y                  F+   K L+      V   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 575 GGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL-----ALPR------PGLV-----LY 618
               +   +     ++ +  D   + + +  ++L      LPR      P  +       
Sbjct: 281 LSAATTTHISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYY 662
           ++ +   +N   V + D L    +   + L   +      R  +
Sbjct: 338 RDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEY-----RKMF 375

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 81/476 (17%), Positives = 148/476 (31%), Gaps = 150/476 (31%)

Query: 9   YWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTR 68
           +WL L    C+S  ++               L M   + Y+++       D        +
Sbjct: 185 FWLNL--KNCNSPETV---------------LEMLQKLLYQIDPNWTSRSDHSSN---IK 224

Query: 69  HEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI------------ 116
             I  I       +  L+R        L    YE+ L  L  ++                
Sbjct: 225 LRIHSI-------QAELRR-------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 117 -GRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG-----DIELWFKYMEFCRQ 170
             R             K V+DF   A    I                  L  KY++ CR 
Sbjct: 271 TTRF------------KQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLD-CRP 315

Query: 171 RK--------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH-------NLNVTAAR--- 212
           +         N R   ++A+ IR        W +    +           L     R   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 213 ---ALMQNGLRVCPTS--EELWVEYLRMEL-TYLNKLKARKVALGEDKGTLVRDH----- 261
              ++      + PT     +W + ++ ++   +NKL    +   + K + +        
Sbjct: 376 DRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 262 -------RDADEKRWIN--------ENKGLFMP-LDGEVENTDGSQPENMESQKSVDLFR 305
                    A  +  ++        ++  L  P LD    +  G   +N+E  + + LFR
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 306 E--QGLRVLQT--IYSG-AVEALPSSFNLRQ--RFFE--IVEATNLAQSDDMHDKILSDM 356
                 R L+    +   A  A  S  N  Q  +F++  I +      +D  ++++++ +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYERLVNAI 548

Query: 357 QRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ-----VYEEALKNV 407
             DFL  PK  + L   K TD +              + A+      ++EEA K V
Sbjct: 549 L-DFL--PKIEENLICSKYTDLL--------------RIALMAEDEAIFEEAHKQV 587

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 64/550 (11%), Positives = 149/550 (27%), Gaps = 99/550 (18%)

Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN 205
           +    +     D++ W   +   + +   + +K   +++   P     W      E    
Sbjct: 1   MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60

Query: 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDAD 265
            N      L Q  L       +LW  YL       + ++  K  L   K  + + +  A 
Sbjct: 61  -NYDKVEKLFQRCLMKVL-HIDLWKCYL-------SYVRETKGKLPSYKEKMAQAYDFAL 111

Query: 266 EKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPS 325
           +K  +                   +     E+Q+   + R         +Y        +
Sbjct: 112 DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR---------VYQ---RGCVN 159

Query: 326 SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP-KYWDWLARLKMTDSVSKDGT 384
                ++ +          +  +  K++ D  RD++       ++   +K  D  +    
Sbjct: 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219

Query: 385 SEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI 444
            ++      Q  +               +  Y ++          E  +           
Sbjct: 220 PQNTPQEAQQVDM---------------WKKYIQW----------EKSNPLRTEDQTLIT 254

Query: 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504
             ++  YE+   +     DI +       Q  KL   +        G ++++        
Sbjct: 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK--------GDMNNAKLFSDEAA 306

Query: 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHY----- 559
           ++  R +                             ++  L+     +  ++  Y     
Sbjct: 307 NIYERAI------------------------STLLKKNMLLYFAYADYEESRMKYEKVHS 342

Query: 560 -FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618
            +++L+ I  I                  +    + +GI+  R ++K+     R    +Y
Sbjct: 343 IYNRLLAIEDIDPTLVY---------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393

Query: 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVY 678
                +E   +   DK     A K+FE  L  Y         Y    + L        ++
Sbjct: 394 VTAALMEYYCS--KDKSV---AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448

Query: 679 WRARKTLKDS 688
            R   +    
Sbjct: 449 ERVLTSGSLP 458

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 140 VARILEIYRLAVMRFKGDIEL-WFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYA 197
             ++  IY   +     D  L + +YM+F R+ +     + +  +          V++ A
Sbjct: 337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396

Query: 198 AAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           A  E+  + + + A  + + GL+      E  + Y+            R +
Sbjct: 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 59/498 (11%), Positives = 147/498 (29%), Gaps = 60/498 (12%)

Query: 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAA 198
           + +  + Y   V +F      W  Y+E   + KN  +++K+  + +     +  +W    
Sbjct: 28  IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID-LWKCYL 86

Query: 199 AWEFDHNLNVTAARALMQNGLRVCP-------TSEELWVEYLRMELTYLNKLK----ARK 247
           ++  +    + + +  M                S ++WV+Y+                R 
Sbjct: 87  SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146

Query: 248 VALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307
            A+         +     E+ W + NK          +     +  +  + + V    E 
Sbjct: 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 206

Query: 308 GLRVLQ----TIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILSDMQRDFL 361
            ++ L     ++            ++ +++  +E            +  +++   ++  L
Sbjct: 207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266

Query: 362 VDPKYWD-WLARLKMTDSVSKDGTSEDIV---PSQMQKAIQVYEEALKNVP--SSMIFDL 415
           V   + D W    +  +  SK    +  +        +A  +YE A+  +   + +++  
Sbjct: 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326

Query: 416 YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-IAHRYVTLYLQ 474
           Y  +    +  K E+                   +Y +  A+  +    +  +Y+    +
Sbjct: 327 YADYEESRM--KYEKVHS----------------IYNRLLAIEDIDPTLVYIQYMKFARR 368

Query: 475 LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534
              +   R +  K           +++    +E  C    S   S A    IFEL     
Sbjct: 369 AEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYC----SKDKSVAF--KIFELGLKKY 421

Query: 535 TKVSALESESLWLMALKFFMNQKHY--FDKLVEIALISVAKDGGGESGFSLPSAIINLVI 592
                       L  + +  +         L E  L S +            +  +    
Sbjct: 422 GD-----IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW--ARFLAFES 474

Query: 593 QKDGIQQAREMYKRFLAL 610
               +    ++ KR    
Sbjct: 475 NIGDLASILKVEKRRFTA 492

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 140 VARILEIYRLAVMRFKGDIEL-WFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYA 197
             ++  IY   +     D  L + +YM+F R+ +     + +  +          V++ A
Sbjct: 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174

Query: 198 AAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           A  E+  + + + A  + + GL+      E  + Y+            R +
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 10/125 (8%), Positives = 39/125 (31%), Gaps = 18/125 (14%)

Query: 141 ARILEIYRLAVMRFKGDIELWFKYMEFC---------------RQRKNGRMKKVLAQVIR 185
            R++  Y   ++      ++W++  ++                 +  +     +  + I 
Sbjct: 33  KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 92

Query: 186 -FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP-TSEELWVEYLRMELTYLNKL 243
               K   ++   A +E +  +      ++    L +       ++++Y++         
Sbjct: 93  TLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151

Query: 244 KARKV 248
             R +
Sbjct: 152 SGRMI 156

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 142 RILEIYRLAVMRF-KGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPG-VWIYAA 198
               IY  A+    K ++ L+F Y ++   R    ++  +  +++      P  V+I   
Sbjct: 82  EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 141

Query: 199 AWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL-KARKV 248
            +       + + R + +       T   ++V    ME         A K+
Sbjct: 142 KFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
           +    + +GI+  R ++K+     R    +Y     +E   +   DK     A K+FE  
Sbjct: 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS--KDKSV---AFKIFELG 195

Query: 648 LATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688
           L  Y         Y    + L        ++ R   +    
Sbjct: 196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 40/262 (15%), Positives = 84/262 (32%), Gaps = 50/262 (19%)

Query: 450 VYEKAEAMGCLTEDIAHRYVTLYLQLGKL--------------DEARKLAAKLCSGKLSD 495
            YE+   +     DI +       Q  KL              DEA  +  +  S  L  
Sbjct: 38  AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 97

Query: 496 SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN 555
           ++ L+      E               + SI+      L  +  ++   +++  +KF   
Sbjct: 98  NMLLYFAYADYEES-------RMKYEKVHSIYN----RLLAIEDIDPTLVYIQYMKFARR 146

Query: 556 QKHY--FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP 613
            +       + + A     +D        + +A++     KD    A ++++        
Sbjct: 147 AEGIKSGRMIFKKAR----EDARTRHHVYVTAALMEYYCSKD-KSVAFKIFEL------- 194

Query: 614 GLVLYQNCIELENNLA----SVGDKDSLVNARKLFESALA----TYDQNTSLWRDYYSTE 665
           GL  Y +  E           + + +   N R LFE  L       +++  +W  + + E
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDN---NTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251

Query: 666 TKLGTSETATAVYWRARKTLKD 687
           + +G   +   V  R     ++
Sbjct: 252 SNIGDLASILKVEKRRFTAFRE 273

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 59/570 (10%), Positives = 164/570 (28%), Gaps = 52/570 (9%)

Query: 142 RILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAW 200
            ++      +     DI L+ K ++     K   ++ +   ++    P +  +W    + 
Sbjct: 50  DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSL 109

Query: 201 EFDH--NLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258
           EFD    L+      ++   L     + +  +      +TY+ K         E +  ++
Sbjct: 110 EFDKMEELDAAVIEPVLARCLSKELGNND--LSLWLSYITYVRKKNDIITGGEEARNIVI 167

Query: 259 RDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318
           +  +   +K        +F P   +  N      E+ +     +   +Q ++ ++ +Y  
Sbjct: 168 QAFQVVVDKC------AIFEPKSIQFWNEYLHFLEHWKPVNKFE--EQQRVQYIRKLYKT 219

Query: 319 AVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378
            +             ++         +     + + ++   ++     +     +     
Sbjct: 220 LLCQPMDCLE---SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT---- 272

Query: 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPS 438
               G   ++  +  Q       +  +     ++        +   +  K E  D    +
Sbjct: 273 ---KGLKRNLPITLNQATESNLPKPNEYDVQQLLIW---LEWIRWESDNKLELSDDLHKA 326

Query: 439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498
            + +       VY +A    C   +I         +            KL    + +S  
Sbjct: 327 RMTY-------VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379

Query: 499 LWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKH 558
           L                   +    +    L    L +       ++  +  K       
Sbjct: 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439

Query: 559 YFDKLVEIALISVAKDGGGESGFSLP---------SAIINLVIQKDGIQQAREMYKRFLA 609
           Y + +  I  ++ ++   G+               +A I   I KD  + A ++ +  L 
Sbjct: 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD-TKTACKVLELGLK 498

Query: 610 LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---DQNTSLWRDYYSTET 666
                       ++    +    ++      + LFES++           +++     E+
Sbjct: 499 YFATDGEYINKYLDFLIYV---NEES---QVKSLFESSIDKISDSHLLKMIFQKVIFFES 552

Query: 667 KLGTSETATAVYWRARKTLKDSTALTALPD 696
           K+G+  +   +  R  +   +   L    +
Sbjct: 553 KVGSLNSVRTLEKRFFEKFPEVNKLEEFTN 582

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 21/211 (9%)

Query: 57  LDDLERRGLFTRHEISEIVKQRRK-FEYRLKRPSP----LKQDYLAYIEYESQLDALRRL 111
           L  LE      + E  + V+  RK ++  L +P      + Q Y  + +  +QL A R +
Sbjct: 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHI 251

Query: 112 RKKSIGRDEGRERRVSKKMKKSVSDF------SGVARILEIYRLAVMRFKGDIELWFKYM 165
            + S        R + +               +                   + +W +++
Sbjct: 252 GELS--AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309

Query: 166 EFCRQRKNG--------RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217
            +    K          RM  V  Q  +     P +W   A ++ + N + T     ++ 
Sbjct: 310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369

Query: 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           G +  P S  L               +    
Sbjct: 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 26/258 (10%)

Query: 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500
             + S +  ++          E++   Y    + +G+ ++A+K+  +    ++SD + L 
Sbjct: 192 RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EMSDGMFLS 249

Query: 501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYF 560
           L    V         +   K               KV + E + L +  L + + ++   
Sbjct: 250 LYYGLVMDE---EAVYGDLKRKYSM---GEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303

Query: 561 D--KLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618
              KL                   +  A I              ++   L       +L 
Sbjct: 304 LFRKLFIELGNEGVGPH-----VFIYCAFIEYYATGS-RATPYNIFSSGLLKHPDSTLLK 357

Query: 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVY 678
           +        +   GD++   NAR LF+      ++ + +W      E  +G+ E    + 
Sbjct: 358 EEFFLFLLRI---GDEE---NARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELV 407

Query: 679 WRARKTLKDSTALTALPD 696
            +    +K    L  LP 
Sbjct: 408 DQKMDAIKADAILPPLPP 425

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 14/200 (7%)

Query: 63  RGLFTR------HEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI 116
           R  + R        +SE+ K    FE  L + +  K        ++S     ++++    
Sbjct: 109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168

Query: 117 GRDEGRERR---VSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN 173
           G       R   +  +    +      +R+  I+   +  F    E++F Y E+      
Sbjct: 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ 228

Query: 174 G-RMKKVLAQVIRFHPKVPGVWIYAAAWE----FDHNLNVTAARALMQNGLRVCPTSEEL 228
             + KKV+ + I     +     Y    +    +       +               + L
Sbjct: 229 KEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288

Query: 229 WVEYLRMELTYLNKLKARKV 248
            + +L   L        RK+
Sbjct: 289 RINHLNYVLKKRGLELFRKL 308

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 159 ELWFKYMEFCRQRKNG-RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217
            L   ++ +  +++     +K+  ++       P V+IY A  E+    +      +  +
Sbjct: 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVG-PHVFIYCAFIEYYATGSRATPYNIFSS 345

Query: 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           GL   P S  L  E+    L   ++  AR +
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 42/410 (10%), Positives = 102/410 (24%), Gaps = 69/410 (16%)

Query: 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVW----I 195
              +  ++   + +   +++LW  Y+E+ R+    +  K+         +    W    +
Sbjct: 30  YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKK-FKLYEVYEFTLGQFENYWDSYGL 87

Query: 196 YAAAWEFDHNL-----NVTAARALMQNGLRVCPTS-EELWVEYLRMELTYLNKLKARKVA 249
           Y    E +  +      +   R      L+    S  ELW ++   EL  LNK+  +K+ 
Sbjct: 88  YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIV 146

Query: 250 LGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL 309
                       R    +  I            ++E  +G +      +  +       L
Sbjct: 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206

Query: 310 RVL-----------------------QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSD 346
                                     + +    +E     F        + E        
Sbjct: 207 DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLK 266

Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN 406
             +    ++              +  L              +    ++   +++ E    
Sbjct: 267 RKYSMGEAESAEKVFSKELDLLRINHLNYV-----------LKKRGLELFRKLFIELGNE 315

Query: 407 VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466
                +F              +                     ++         +  +  
Sbjct: 316 GVGPHVFIYCAFIEY-YATGSRATPY----------------NIFSSGLLKHPDSTLLKE 358

Query: 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF 516
            +    L++G  + AR L       +L  + ++W   I  E    +   F
Sbjct: 359 EFFLFLLRIGDEENARALFK-----RLEKTSRMWDSMIEYEFMVGSMELF 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	697
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	100.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.86
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.73
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.72
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.7
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.61
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.57
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.5
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.48
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.32
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.31
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.24
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.21
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.21
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.18
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.06
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.0
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.98
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.96
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.74
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.67
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.6
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.55
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.52
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.51
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.47
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.45
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.42
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.41
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.4
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.39
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.34
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.33
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.31
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.29
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.25
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.24
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.22
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.22
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.2
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.2
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.2
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.19
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.18
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.12
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.1
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.08
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	98.08
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	98.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.05
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.02
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.02
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.02
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.0
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	97.99
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.99
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.99
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.98
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.96
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.96
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.94
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.93
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.91
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.89
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.89
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.88
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.88
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.83
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.81
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.8
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.79
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.66
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.64
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.56
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.55
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.47
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.45
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.38
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.3
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.28
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.25
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.23
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	97.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.22
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.21
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.19
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.18
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.14
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.02
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.94
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.92
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.88
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.85
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	96.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.79
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.67
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.65
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.63
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.52
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.36
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.34
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.27
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.24
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	96.24
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.18
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.01
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	95.83
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.63
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.58
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.4
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.05
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.75
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.5
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.29
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	89.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	86.5
1klx_A	138	Cysteine rich protein B; structural genomics, heli	86.49
1pc2_A	152	Mitochondria fission protein; unknown function; NM	86.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	86.31
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	81.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	80.27

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=100.00  E-value=7.1e-43  Score=398.68  Aligned_cols=460  Identities=11%  Similarity=0.101  Sum_probs=346.7

Q ss_pred             hhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCC
Q 005434           77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG  156 (697)
Q Consensus        77 kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~  156 (697)
                      +...||..|.++|.+...|++||+++...                                ....+++.+|+|++..||.
T Consensus        51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~--------------------------------~~~~~aR~vyEraL~~fP~   98 (679)
T 4e6h_A           51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSL--------------------------------KQWKQVYETFDKLHDRFPL   98 (679)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHHHHhc--------------------------------CcHHHHHHHHHHHHHHCCC
Confidence            36789999999999999999999997432                                1267788999999999999


Q ss_pred             CHHHHHHHHHHHHHhcC----chHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCH--------HHHHHHHHHhhhh-
Q 005434          157 DIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHP--KVPGVWIYAAAWEFDHNLNV--------TAARALMQNGLRV-  221 (697)
Q Consensus       157 ~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~p--~~~~lW~~~a~~e~~~~~~~--------~~aR~~~~r~l~~-  221 (697)
                      +..+|..|++++.+.+.    ..++.+|+|||..+|  .++.+|..|+.|... .+++        +.+|.+|++|+.. 
T Consensus        99 ~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~-~~~~~~~~~~~r~~vr~~FErAl~~v  177 (679)
T 4e6h_A           99 MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRK-KNDIITGGEEARNIVIQAFQVVVDKC  177 (679)
T ss_dssp             CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHH-HSCSTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-hcccccccchhHHHHHHHHHHHHHHh
Confidence            99999999999988754    479999999999994  578899999999864 3432        5567999999986 


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          222 ---CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       222 ---~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                         +|.+..||..|++||....          .. .             .                            ++
T Consensus       178 G~~d~~s~~iW~~Yi~f~~~~~----------~~-~-------------~----------------------------~e  205 (679)
T 4e6h_A          178 AIFEPKSIQFWNEYLHFLEHWK----------PV-N-------------K----------------------------FE  205 (679)
T ss_dssp             TTTCSSCHHHHHHHHHHHHTCC----------CC-S-------------H----------------------------HH
T ss_pred             CcccccchHHHHHHHHHHHhcc----------cc-C-------------c----------------------------HH
Confidence               4557899999999986421          00 0             0                            00


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                            ..+.++.++.||++++. +|..-  ...++..|..|+.......++.++....                     
T Consensus       206 ------eq~~~~~~R~iy~raL~-iP~~~--~~~~w~~Y~~fe~~~~~~~a~~~~~e~~---------------------  255 (679)
T 4e6h_A          206 ------EQQRVQYIRKLYKTLLC-QPMDC--LESMWQRYTQWEQDVNQLTARRHIGELS---------------------  255 (679)
T ss_dssp             ------HHHHHHHHHHHHHHHTT-SCCSS--HHHHHHHHHHHHHHHCTTTHHHHHHHHH---------------------
T ss_pred             ------HHhHHHHHHHHHHHHHh-CccHH--HHHHHHHHHHHHHhcCcchHHHHHHHhh---------------------
Confidence                  01245789999999996 55431  2333334444431100112333332211                     


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHH------Hhhc-------------CCc--------hhHHHHHHHHHHHHhcCCcccc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEE------ALKN-------------VPS--------SMIFDLYTKFLMDMIAPKKEET  431 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~------al~~-------------~~~--------~~lw~~yi~~~~~~~~~~~~~~  431 (697)
                                  ..+..|+.+|.+      +|..             +|.        ..+|..|+.|++....      
T Consensus       256 ------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~------  317 (679)
T 4e6h_A          256 ------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL------  317 (679)
T ss_dssp             ------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT------
T ss_pred             ------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc------
Confidence                        112223333322      2211             121        1399999999875210      


Q ss_pred             cCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434          432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR-KLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (697)
Q Consensus       432 ~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~-~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (697)
                      .+.     .....++++.+|++|+...|..+++|+.|++++...|+.++|+ +++++|+ ..+|.+..||..|+.+++..
T Consensus       318 ~l~-----~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~~~P~s~~Lwl~~a~~ee~~  391 (679)
T 4e6h_A          318 ELS-----DDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-QCIPNSAVLAFSLSEQYELN  391 (679)
T ss_dssp             CCC-----HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHT
T ss_pred             ccc-----chhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHh
Confidence            000     0123567889999999999999999999999999999999996 9999999 79999999999999999987


Q ss_pred             cccCCCCCCccchHHHHHHHHHHHhhc-----------Ch---------hhhHHHHHHHHHHHHhhh--HHHHHHHHHHH
Q 005434          511 VTRNSFSPSKADILSIFELLKCILTKV-----------SA---------LESESLWLMALKFFMNQK--HYFDKLVEIAL  568 (697)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~f~~al~~~-----------p~---------~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~  568 (697)
                      +.          +++++++|++++..+           |.         .+...+|+.|+.++.+.+  +.++++|++|+
T Consensus       392 ~~----------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          392 TK----------IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             TC----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CC----------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            63          799999999999864           31         124569999999887665  68999999999


Q ss_pred             HhhhhCCCCCCCCChHHHHHHHHHHhCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434          569 ISVAKDGGGESGFSLPSAIINLVIQKDG-IQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA  647 (697)
Q Consensus       569 ~~~~~~~~~~~~~~l~~~yl~~~~~~~~-~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a  647 (697)
                      +.++..     ...++..++.++...++ .++||+||+++++.+|.+..+|..|++||...+      ++++||++|++|
T Consensus       462 ~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~------~~~~AR~lfera  530 (679)
T 4e6h_A          462 RLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN------EESQVKSLFESS  530 (679)
T ss_dssp             HTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred             HhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC------CHHHHHHHHHHH
Confidence            763221     34455555555555554 899999999999999999999999999999998      899999999999


Q ss_pred             HhhCCC---CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc---ccccCCC
Q 005434          648 LATYDQ---NTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST---ALTALPD  696 (697)
Q Consensus       648 l~~~~~---~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~---~f~~~~~  696 (697)
                      +..+++   ...+|..|++||..+|+.+.+++|+.|+.+.+|++.   .|+.+|.
T Consensus       531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~  585 (679)
T 4e6h_A          531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK  585 (679)
T ss_dssp             TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence            998872   459999999999999999999999999999999763   5776663

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=3.4e-36  Score=339.39  Aligned_cols=452  Identities=15%  Similarity=0.178  Sum_probs=342.7

Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHH
Q 005434           81 FEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIEL  160 (697)
Q Consensus        81 fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~l  160 (697)
                      ||..|...|.+...|+.|+++ ...                                ....+++.+|++++..+|++..+
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~--------------------------------~~~~~a~~~~e~al~~~P~~~~~   48 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQN--------------------------------QPIDKARKTYERLVAQFPSSGRF   48 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHS--------------------------------SCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHh--------------------------------CCHHHHHHHHHHHHHHCCCCHHH
Confidence            788999999999999999985 211                                12567889999999999999999


Q ss_pred             HHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH----HHHHhhhhC---CCCHHHHHHH
Q 005434          161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARA----LMQNGLRVC---PTSEELWVEY  232 (697)
Q Consensus       161 W~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~----~~~r~l~~~---p~~~~lW~~y  232 (697)
                      |..|++++.+.| ..+++.+|++|+..+| ++.+|+.|+.+..+..|+++.||.    +|++++..+   |.+..+|..|
T Consensus        49 w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~  127 (530)
T 2ooe_A           49 WKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY  127 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            999999999988 4789999999999999 588999999988777788877765    999998764   5678999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (697)
Q Consensus       233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (697)
                      +.||....          +..              .|                                  ...++.+.|
T Consensus       128 ~~~~~~~~----------~~~--------------~~----------------------------------~~~~~~~~a  149 (530)
T 2ooe_A          128 INFLKGVE----------AVG--------------SY----------------------------------AENQRITAV  149 (530)
T ss_dssp             HHHHHHSC----------CCS--------------ST----------------------------------THHHHHHHH
T ss_pred             HHHHhcCC----------Ccc--------------cH----------------------------------HHHhHHHHH
Confidence            99986421          000              00                                  012356789


Q ss_pred             HHHHHHHHhcCCCch--HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccc
Q 005434          313 QTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVP  390 (697)
Q Consensus       313 ~~iy~~al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~  390 (697)
                      +.+|+++++ +|...  .+|..|..+....+    ...++.++..                                 ..
T Consensus       150 ~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~----~~~~~~~l~~---------------------------------~~  191 (530)
T 2ooe_A          150 RRVYQRGCV-NPMINIEQLWRDYNKYEEGIN----IHLAKKMIED---------------------------------RS  191 (530)
T ss_dssp             HHHHHHHTT-SCCTTHHHHHHHHHHHHHHHC----HHHHHHHHHT---------------------------------TH
T ss_pred             HHHHHHHHh-chhhhHHHHHHHHHHHHHhhc----hhHHHHHHHH---------------------------------hh
Confidence            999999999 66532  34444333222111    1122222110                                 12


Q ss_pred             hHHHHHHHHHHH------Hhhc----CC-c--------hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHH
Q 005434          391 SQMQKAIQVYEE------ALKN----VP-S--------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY  451 (697)
Q Consensus       391 ~~~~~a~~vye~------al~~----~~-~--------~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~y  451 (697)
                      +.+..|+.+|++      +++.    +| +        ..+|..|+.++...... .++         ......++..+|
T Consensus       192 ~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~-~~~---------~~~~~~~a~~~y  261 (530)
T 2ooe_A          192 RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR-TED---------QTLITKRVMFAY  261 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC-CSC---------SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc-CCc---------chhHHHHHHHHH
Confidence            456667777665      6654    33 2        24999999998752110 001         011245788999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCC
Q 005434          452 EKAEAMGCLTEDIAHRYVTLYLQ-------LGKLD-------EARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS  517 (697)
Q Consensus       452 e~al~~~~~~~~lw~~y~~l~~~-------~~~~~-------~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~  517 (697)
                      ++|+..+|.++++|..|+.++.+       .|+++       +|+.++++|+...+|++..+|..++.++...|.     
T Consensus       262 ~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~-----  336 (530)
T 2ooe_A          262 EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK-----  336 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC-----
Confidence            99999999999999999999987       68877       899999999932689999999999999988763     


Q ss_pred             CCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH--HHHHHHHH
Q 005434          518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS--AIINLVIQ  593 (697)
Q Consensus       518 ~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~--~yl~~~~~  593 (697)
                           .++++++|++++...| .....+|..|+.++...+  +.++.+|++|+...+.      ...++.  .++++. .
T Consensus       337 -----~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~~-~  403 (530)
T 2ooe_A          337 -----YEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYY-C  403 (530)
T ss_dssp             -----HHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHHH-H
T ss_pred             -----HHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHHH-H
Confidence                 7999999999998544 333468999998876655  5788999999864321      112221  223322 4


Q ss_pred             hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHhcC
Q 005434          594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKLG  669 (697)
Q Consensus       594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~----~lW~~y~~fE~~~G  669 (697)
                      .|+.++||++|+++++.+|.+..+|..|++++...|      ++++||.+|++|+..++.++    .+|..|++||..+|
T Consensus       404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G  477 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  477 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT------CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred             cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC------CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence            799999999999999999999999999999999998      99999999999999876444    59999999999999


Q ss_pred             ChhhHHHHHHHHHhhcCC----c--cccccCCC
Q 005434          670 TSETATAVYWRARKTLKD----S--TALTALPD  696 (697)
Q Consensus       670 ~~~~a~~vy~ral~~~~~----~--~~f~~~~~  696 (697)
                      +.+.+..++.|+++.+|+    .  ..|+.+|.
T Consensus       478 ~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~~  510 (530)
T 2ooe_A          478 DLASILKVEKRRFTAFREEYEGKETALLVDRYK  510 (530)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGTC
T ss_pred             CHHHHHHHHHHHHHHCchhccCchHHHHHHHHH
Confidence            999999999999999973    2  27777763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=100.00  E-value=1.2e-35  Score=339.07  Aligned_cols=419  Identities=11%  Similarity=0.128  Sum_probs=319.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHhh
Q 005434          144 LEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN---VTAARALMQNGL  219 (697)
Q Consensus       144 ~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~---~~~aR~~~~r~l  219 (697)
                      ...|+++|..+|.|++.|..|++++.+.+ ...++.+|+++|..+|.++.+|+.|+.+|. ..++   ++.++.+|+|||
T Consensus        52 i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~-~~~~~~~~~~v~~lfeRal  130 (679)
T 4e6h_A           52 IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF-DKMEELDAAVIEPVLARCL  130 (679)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TC--CCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hhCCcchHHHHHHHHHHHH
Confidence            46789999999999999999999998876 468999999999999999999999999997 7888   999999999999


Q ss_pred             hhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          220 RVCP--TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       220 ~~~p--~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      ..+|  .+.+||..|++|....++          ...                                           
T Consensus       131 ~~~~~~~sv~LW~~Yl~f~~~~~~----------~~~-------------------------------------------  157 (679)
T 4e6h_A          131 SKELGNNDLSLWLSYITYVRKKND----------IIT-------------------------------------------  157 (679)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHSC----------STT-------------------------------------------
T ss_pred             HhcCCCCCHHHHHHHHHHHHHhcc----------ccc-------------------------------------------
Confidence            9993  478999999998754211          000                                           


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhcCCC----chHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHh
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEALPS----SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL  373 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~----~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~  373 (697)
                       .     .+.+.+.++.+|++|+..++.    +..+|..|++++...+..                     ..|      
T Consensus       158 -~-----~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~---------------------~~~------  204 (679)
T 4e6h_A          158 -G-----GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV---------------------NKF------  204 (679)
T ss_dssp             -T-----HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC---------------------SHH------
T ss_pred             -c-----cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc---------------------CcH------
Confidence             0     001235678999999987654    456777777665443210                     001      


Q ss_pred             hcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHH
Q 005434          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (697)
Q Consensus       374 ~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~---~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~  450 (697)
                      +              ..+.++.+|.+|+++|. +|..   .+|..|..|+...... ....    ..+........|+..
T Consensus       205 e--------------eq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~-~a~~----~~~e~~~~y~~Ar~~  264 (679)
T 4e6h_A          205 E--------------EQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQL-TARR----HIGELSAQYMNARSL  264 (679)
T ss_dssp             H--------------HHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTT-THHH----HHHHHHHHHHHHHHH
T ss_pred             H--------------HHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcc-hHHH----HHHHhhHHHHHHHHH
Confidence            1              02458899999999995 6753   4999999998763110 0000    000012234456666


Q ss_pred             HHHH------HHcC-CC-------------------cHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhccCCCcH
Q 005434          451 YEKA------EAMG-CL-------------------TEDIAHRYVTLYLQLG-------KLDEARKLAAKLCSGKLSDSV  497 (697)
Q Consensus       451 ye~a------l~~~-~~-------------------~~~lw~~y~~l~~~~~-------~~~~A~~l~~~al~~~~P~~~  497 (697)
                      |...      +... |.                   ...+|..|++++...+       ..++++.+|++++ ..+|...
T Consensus       265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL-~~~p~~~  343 (679)
T 4e6h_A          265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA-QHVCFAP  343 (679)
T ss_dssp             HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHTTTCH
T ss_pred             HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH-HHcCCCH
Confidence            6542      1111 11                   1379999999998865       2345678999999 7999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCccchHHHH-HHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhh-
Q 005434          498 QLWLLRISVEIRCVTRNSFSPSKADILSIF-ELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAK-  573 (697)
Q Consensus       498 ~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~-  573 (697)
                      ++|..|+.++...+.          .+.++ ++|++|+..+|.  +..||..|+.+++..+  +.++.+|++++..+.. 
T Consensus       344 ~lW~~ya~~~~~~~~----------~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~  411 (679)
T 4e6h_A          344 EIWFNMANYQGEKNT----------DSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD  411 (679)
T ss_dssp             HHHHHHHHHHHHHSC----------CTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            999999999988764          45664 999999998885  4789999999988776  6899999999986421 


Q ss_pred             ------CCCCC---------CCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434          574 ------DGGGE---------SGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDSL  637 (697)
Q Consensus       574 ------~~~~~---------~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~i~lE~~~~~~~~~~~~  637 (697)
                            ..+..         ....+|..|+.++.+.|++++||++|++|+.. ++....+|..++.||...+.     +.
T Consensus       412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-----d~  486 (679)
T 4e6h_A          412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-----DT  486 (679)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-----CC
T ss_pred             hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-----CH
Confidence                  10000         01347888999999999999999999999998 55667899999999988751     58


Q ss_pred             HHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          638 VNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       638 ~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      ++||++|+++++.+|+++.+|+.|++||...|+.++||.+|+||+..+++
T Consensus       487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=100.00  E-value=8.8e-33  Score=307.03  Aligned_cols=393  Identities=13%  Similarity=0.090  Sum_probs=285.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      +.+++.+|+|++..||.              ....+++.+|+|||..+| +..+|..|+.|+.......+.+|.+|++|+
T Consensus        11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al   75 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL   75 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            56788999999999997              125689999999999999 789999999999754335677899999999


Q ss_pred             hh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchh
Q 005434          220 RV---CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (697)
Q Consensus       220 ~~---~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (697)
                      ..   +|.+..+|..|++|+.....                                                       
T Consensus        76 ~~vg~d~~s~~iW~~Yi~f~~~~~~-------------------------------------------------------  100 (493)
T 2uy1_A           76 GQFENYWDSYGLYKEYIEEEGKIED-------------------------------------------------------  100 (493)
T ss_dssp             HHSTTCTTCHHHHHHHHHHTSSCSS-------------------------------------------------------
T ss_pred             HHcCCCcccHHHHHHHHHHHHhchh-------------------------------------------------------
Confidence            87   46788999999999742100                                                       


Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcc
Q 005434          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (697)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~  376 (697)
                              ..+..+.++.||++|+. +|..  -...+|..|..|+.......+..++...                    
T Consensus       101 --------~~~~~~~vR~iy~rAL~-~P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--------------------  149 (493)
T 2uy1_A          101 --------EQTRIEKIRNGYMRALQ-TPMG--SLSELWKDFENFELELNKITGKKIVGDT--------------------  149 (493)
T ss_dssp             --------HHHHHHHHHHHHHHHHT-SCCT--THHHHHHHHHHHHHHHCHHHHHHHHHHH--------------------
T ss_pred             --------hhHHHHHHHHHHHHHHh-Chhh--hHHHHHHHHHHHHHHhccccHHHHHHHH--------------------
Confidence                    01245689999999998 4432  1245555555554211122233332221                    


Q ss_pred             cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHH
Q 005434          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (697)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~a  454 (697)
                                   .+.+..|+.+|+.+....+.  ..+|..|++|+++.... .+          .....++++.+|++|
T Consensus       150 -------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-~~----------~~~~~~Rv~~~ye~a  205 (493)
T 2uy1_A          150 -------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-LG----------GRPHESRMHFIHNYI  205 (493)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-CC----------HHHHHHHHHHHHHHH
T ss_pred             -------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-Cc----------chhhHHHHHHHHHHH
Confidence                         13456678888877765432  34999999998742100 00          012356789999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       455 l~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      +...|.++++|+.|+.++.+.|+++.|+.++++|+ +. |.+..+|..|+.+.. ...         ..+.+.+.+...-
T Consensus       206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~-P~~~~l~~~y~~~~e-~~~---------~~~~l~~~~~~~~  273 (493)
T 2uy1_A          206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM-SDGMFLSLYYGLVMD-EEA---------VYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-CCSSHHHHHHHHHTT-CTH---------HHHHHHHHTC---
T ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC-CCcHHHHHHHHhhcc-hhH---------HHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999 66 999999998876621 000         1122211110000


Q ss_pred             ----hhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhC-CHHHHHHHHHHH
Q 005434          535 ----TKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD-GIQQAREMYKRF  607 (697)
Q Consensus       535 ----~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~-~~~~AR~iy~~~  607 (697)
                          ...++.....+|..|+.++...+  +.++.+|++| . .++     ....++..++.++...+ +.++||+||+++
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-----~~~~v~i~~A~lE~~~~~d~~~ar~ife~a  346 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-----VGPHVFIYCAFIEYYATGSRATPYNIFSSG  346 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-----CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-----CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence                01233445689999999886655  6899999998 3 211     13445655555555555 699999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          608 LALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       608 i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ++.+|....+|..|+++|..++      +.++||.+|+++    .++..+|..|++||..+|+.++++.++++++..+.
T Consensus       347 l~~~~~~~~~~~~yid~e~~~~------~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          347 LLKHPDSTLLKEEFFLFLLRIG------DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK  415 (493)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence            9998888899999999999998      899999999998    34679999999999999999999999999999885

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=6e-31  Score=296.43  Aligned_cols=406  Identities=12%  Similarity=0.111  Sum_probs=309.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434          146 IYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (697)
Q Consensus       146 iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~  224 (697)
                      ||++++..+|.++++|..++.+ .+.| ..+++.+|++++..+|.++.+|+.|+.++. ..|+++.|+.+|+|++..+| 
T Consensus         1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~-~~~~~~~a~~~~~ral~~~p-   77 (530)
T 2ooe_A            1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI-KAKNYDKVEKLFQRCLMKVL-   77 (530)
T ss_dssp             CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTCC-
T ss_pred             ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCC-
Confidence            5899999999999999999996 4445 568999999999999999999999999997 79999999999999999999 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhh
Q 005434          225 SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLF  304 (697)
Q Consensus       225 ~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (697)
                      +..+|..|++++....          +...                                                  
T Consensus        78 ~~~lw~~~~~~~~~~~----------~~~~--------------------------------------------------   97 (530)
T 2ooe_A           78 HIDLWKCYLSYVRETK----------GKLP--------------------------------------------------   97 (530)
T ss_dssp             CHHHHHHHHHHHHHHT----------TTST--------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHc----------cchh--------------------------------------------------
Confidence            6889999998775421          1000                                                  


Q ss_pred             hhhhhhHHHHHHHHHHhcCC---CchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCC
Q 005434          305 REQGLRVLQTIYSGAVEALP---SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK  381 (697)
Q Consensus       305 ~~~~~~~a~~iy~~al~~~p---~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~  381 (697)
                        ...+.++.+|++|+..++   .+..+|..++.+..+...                    .. .|       .      
T Consensus        98 --~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~--------------------~~-~~-------~------  141 (530)
T 2ooe_A           98 --SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA--------------------VG-SY-------A------  141 (530)
T ss_dssp             --THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC--------------------CS-ST-------T------
T ss_pred             --hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC--------------------cc-cH-------H------
Confidence              012346778999887654   344566666554433210                    00 01       0      


Q ss_pred             CCCCcCccchHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH-----
Q 005434          382 DGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK-----  453 (697)
Q Consensus       382 ~~~~~~~~~~~~~~a~~vye~al~~~~~~---~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~-----  453 (697)
                             ..++++.|+.+|+++++ +|..   .+|..|..|+...... .....    .....+....|+.+|..     
T Consensus       142 -------~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~-~~~~~----l~~~~~~~~~A~~~~~~~~~~~  208 (530)
T 2ooe_A          142 -------ENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH-LAKKM----IEDRSRDYMNARRVAKEYETVM  208 (530)
T ss_dssp             -------HHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH-HHHHH----HHTTHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh-HHHHH----HHHhhHHHHHHHHHHHHHHHHH
Confidence                   14789999999999999 6653   4899999987643100 00000    00013445667777665     


Q ss_pred             -HHHc-----CCCc-------HHHHHHHHHHHHhcC----CH----HHHHHHHHHHhhccCCCcHHHHHHHHHHHHH---
Q 005434          454 -AEAM-----GCLT-------EDIAHRYVTLYLQLG----KL----DEARKLAAKLCSGKLSDSVQLWLLRISVEIR---  509 (697)
Q Consensus       454 -al~~-----~~~~-------~~lw~~y~~l~~~~~----~~----~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~---  509 (697)
                       ++..     .|..       ..+|..|+.++...+    +.    .++..++++++ ..+|.+.++|..++.+...   
T Consensus       209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al-~~~p~~~~~w~~~~~~~~~~~~  287 (530)
T 2ooe_A          209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL-LVLGHHPDIWYEAAQYLEQSSK  287 (530)
T ss_dssp             HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhch
Confidence             4432     2221       479999999987642    32    47778999999 7899999999999999875   


Q ss_pred             ----hcccCCCCCCccchH-------HHHHHHHHHHh-hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC
Q 005434          510 ----CVTRNSFSPSKADIL-------SIFELLKCILT-KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG  575 (697)
Q Consensus       510 ----~~~~~~~~~~~~~~~-------~~~~~f~~al~-~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~  575 (697)
                          .|          +++       .++++|++|++ ..|.  +..+|..|+.++...+  +.++.+|++++... +..
T Consensus       288 ~~~~~g----------~~~~a~~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~  354 (530)
T 2ooe_A          288 LLAEKG----------DMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DID  354 (530)
T ss_dssp             HHHTTT----------CCHHHHHHHHHHHHHHHHHTTTTCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSC
T ss_pred             hhhhcc----------chhhhhhhhHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccC
Confidence                23          344       88999999997 4553  5789999999887766  68999999998742 110


Q ss_pred             CCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-cCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434          576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN-LASVGDKDSLVNARKLFESALATYDQN  654 (697)
Q Consensus       576 ~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~-~~~~~~~~~~~raR~lye~al~~~~~~  654 (697)
                          ...+|..|+.++.+.|++++||++|++++..+|....++...+.++.. .|      +.++||++|++++..+|++
T Consensus       355 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~------~~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          355 ----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DKSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHTTC
T ss_pred             ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHCCCC
Confidence                124678888888899999999999999999988887877777777643 55      8999999999999999999


Q ss_pred             chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          655 TSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       655 ~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      +.+|..|++||...|+.++|+.+|+||+...+.
T Consensus       425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            999999999999999999999999999998653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.97  E-value=9.4e-30  Score=282.67  Aligned_cols=393  Identities=15%  Similarity=0.185  Sum_probs=284.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHh---CCCCHHHHHHHHHHHHH---hcCCHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRF---HPKVPGVWIYAAAWEFD---HNLNVTAA  211 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~---~p~~~~lW~~~a~~e~~---~~~~~~~a  211 (697)
                      ..+++.||+|||...| ++++|..|++|+.+.+  ...++.+|++|+..   +|.++.+|..|+.|+..   .+++++.+
T Consensus        30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v  108 (493)
T 2uy1_A           30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI  108 (493)
T ss_dssp             HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence            5678899999999999 9999999999999876  35789999999986   68899999999999731   35689999


Q ss_pred             HHHHHHhhhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC
Q 005434          212 RALMQNGLRVCPT--SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG  289 (697)
Q Consensus       212 R~~~~r~l~~~p~--~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  289 (697)
                      |.+|+|||. .|.  ...+|..|..||...+. ..+.+ ++..                                     
T Consensus       109 R~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~-~~~~~-~~~~-------------------------------------  148 (493)
T 2uy1_A          109 RNGYMRALQ-TPMGSLSELWKDFENFELELNK-ITGKK-IVGD-------------------------------------  148 (493)
T ss_dssp             HHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCH-HHHHH-HHHH-------------------------------------
T ss_pred             HHHHHHHHh-ChhhhHHHHHHHHHHHHHHhcc-ccHHH-HHHH-------------------------------------
Confidence            999999999 464  35899999999976432 11111 1000                                     


Q ss_pred             CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHccccCc----HHHHHHHHHHHHhhCCCCh
Q 005434          290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPS-SFNLRQRFFEIVEATNLAQS----DDMHDKILSDMQRDFLVDP  364 (697)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~-~~~~~~~~~~~~~~fe~~~~----~~~~~~il~~~~~~~p~~~  364 (697)
                                     ..+.+..|+.+|+.+....+. +.++|..++++....+.+..    ...+..++++++..+|..+
T Consensus       149 ---------------~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~  213 (493)
T 2uy1_A          149 ---------------TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE  213 (493)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             ---------------HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence                           012456778888887765443 56788888887654322111    2456778999999999999


Q ss_pred             hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434          365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (697)
Q Consensus       365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (697)
                      .+|+.+|+++..             .+.++.|+.+|++|+.. |.+. +|..|+.+.+.                  ...
T Consensus       214 ~lW~~ya~~~~~-------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~------------------~~~  261 (493)
T 2uy1_A          214 EVYFFYSEYLIG-------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE------------------EAV  261 (493)
T ss_dssp             HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC------------------THH
T ss_pred             HHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch------------------hHH
Confidence            999999998865             36789999999999999 8765 88888776320                  001


Q ss_pred             HHHHHHHH---HH---HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCC
Q 005434          444 ISHLLTVY---EK---AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS  517 (697)
Q Consensus       444 ~~~ar~~y---e~---al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~  517 (697)
                      .+++...|   +.   .....+....+|+.|++++.+.++.+.|+.++++| ..+ +.+..+|..++.++...+.     
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~-----  334 (493)
T 2uy1_A          262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATG-----  334 (493)
T ss_dssp             HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCC-----
Confidence            11111111   00   00001113578888988888888888888888888 222 2356788888877776653     


Q ss_pred             CCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCH
Q 005434          518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (697)
Q Consensus       518 ~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~  597 (697)
                          +.+.++.+|+.+++..|.  ...+|..|+++                                      +...|+.
T Consensus       335 ----d~~~ar~ife~al~~~~~--~~~~~~~yid~--------------------------------------e~~~~~~  370 (493)
T 2uy1_A          335 ----SRATPYNIFSSGLLKHPD--STLLKEEFFLF--------------------------------------LLRIGDE  370 (493)
T ss_dssp             ----CSHHHHHHHHHHHHHCTT--CHHHHHHHHHH--------------------------------------HHHHTCH
T ss_pred             ----ChHHHHHHHHHHHHHCCC--CHHHHHHHHHH--------------------------------------HHHcCCH
Confidence                468888888888887653  34566665543                                      3345788


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC----CCc-hHHHHHHHHHHhcCChh
Q 005434          598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD----QNT-SLWRDYYSTETKLGTSE  672 (697)
Q Consensus       598 ~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~----~~~-~lW~~y~~fE~~~G~~~  672 (697)
                      ++||.+|+++.    .+..+|..|++||...|      +.+.+|++|++++....    .++ .+-..|.+||..+|+.+
T Consensus       371 ~~aR~l~er~~----k~~~lw~~~~~fE~~~G------~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~  440 (493)
T 2uy1_A          371 ENARALFKRLE----KTSRMWDSMIEYEFMVG------SMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYH  440 (493)
T ss_dssp             HHHHHHHHHSC----CBHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHH
Confidence            99999999983    36789999999999999      89999999999997543    222 45588889999999998


Q ss_pred             hHHHHHHHH
Q 005434          673 TATAVYWRA  681 (697)
Q Consensus       673 ~a~~vy~ra  681 (697)
                      ....-|...
T Consensus       441 ~~~~~~~~~  449 (493)
T 2uy1_A          441 CFLDSFNFL  449 (493)
T ss_dssp             HHHHHHCBT
T ss_pred             HHHHHhhhh
Confidence            888877544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=1.4e-18  Score=186.70  Aligned_cols=371  Identities=10%  Similarity=0.048  Sum_probs=290.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|......+...+ ...+...+++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus        15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a   93 (388)
T 1w3b_A           15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHA   93 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            556778899999999999999999888887776 568899999999999999999999999886 789999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      ++..|+....|...+......                                                           
T Consensus        94 l~~~p~~~~~~~~l~~~~~~~-----------------------------------------------------------  114 (388)
T 1w3b_A           94 LRLKPDFIDGYINLAAALVAA-----------------------------------------------------------  114 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred             HHcCcchHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence            999999877776655443221                                                           


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                              ++.+.|...|+++++..|+....+..+-.++...+   ..+.+...++++++..|+++..|..++..+..  
T Consensus       115 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--  181 (388)
T 1w3b_A          115 --------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---RLEEAKACYLKAIETQPNFAVAWSNLGCVFNA--  181 (388)
T ss_dssp             --------SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--
T ss_pred             --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence                    12346788899999888888777777666665433   35778888999999999999999888888764  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 .++++.|...|+++++..|+.. .|.........                  .+..+.+...|++++..
T Consensus       182 -----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          182 -----------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE------------------ARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT------------------TTCTTHHHHHHHHHHHH
T ss_pred             -----------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Confidence                       4778899999999998877643 33322222211                  24467888899999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      +|.++.+|...+..+...|++++|...+++++ ...|++...|..........|          +.+++.+.|++++...
T Consensus       233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~  301 (388)
T 1w3b_A          233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKG----------SVAEAEDCYNTALRLC  301 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999 788888888888887777666          3688888888888776


Q ss_pred             ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434          538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL  617 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~  617 (697)
                      |..  ...|...                                      .......|++++|...|++++...|.....
T Consensus       302 p~~--~~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  341 (388)
T 1w3b_A          302 PTH--ADSLNNL--------------------------------------ANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             TTC--HHHHHHH--------------------------------------HHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             ccc--HHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            543  2223211                                      111234678899999999999988888888


Q ss_pred             HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcC
Q 005434          618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLG  669 (697)
Q Consensus       618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G  669 (697)
                      +...+.+....|      +.+.|..+|++++...|+.++.|..........|
T Consensus       342 ~~~l~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          342 HSNLASVLQQQG------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHTTT------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            888888877787      8899999999999988888888777666554444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=4.6e-20  Score=192.33  Aligned_cols=244  Identities=14%  Similarity=0.141  Sum_probs=197.2

Q ss_pred             hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-------cCCH-----
Q 005434          411 MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ-------LGKL-----  478 (697)
Q Consensus       411 ~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~-------~~~~-----  478 (697)
                      .+|..|++|+++... ..++         .....+++..+|++|+..+|.++++|..|+.++..       .|++     
T Consensus         9 ~~W~~yi~~E~~~~~-~~~~---------~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~   78 (308)
T 2ond_A            9 DMWKKYIQWEKSNPL-RTED---------QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL   78 (308)
T ss_dssp             HHHHHHHHHHHTCTT-CCCC---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHhCcc-cCCc---------hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhccc
Confidence            499999999876210 0011         01123789999999999999999999999999874       4875     


Q ss_pred             --HHHHHHHHHHhhc-cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Q 005434          479 --DEARKLAAKLCSG-KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN  555 (697)
Q Consensus       479 --~~A~~l~~~al~~-~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~  555 (697)
                        ++|+.++++|+ . ..|++..+|..++.++...+          +.++++++|+++++..| .....+|..|+.++..
T Consensus        79 ~~~~A~~~~~rAl-~~~~p~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~  146 (308)
T 2ond_A           79 FSDEAANIYERAI-STLLKKNMLLYFAYADYEESRM----------KYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHH
Confidence              89999999999 6 58999999999999998876          37999999999998544 3323389999988766


Q ss_pred             hh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCC
Q 005434          556 QK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ-KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVG  632 (697)
Q Consensus       556 ~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~-~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~  632 (697)
                      .+  +.++.+|++|+...+.      ...++..++..... .|++++|+++|++++...|.+..+|..++.++..+|   
T Consensus       147 ~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---  217 (308)
T 2ond_A          147 AEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---  217 (308)
T ss_dssp             HHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             hcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---
Confidence            55  6788999999864221      22333322222222 599999999999999999999999999999999998   


Q ss_pred             CcccHHHHHHHHHHHHhhC--C--CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          633 DKDSLVNARKLFESALATY--D--QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       633 ~~~~~~raR~lye~al~~~--~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                         ++++||.+|++++..+  +  ....+|..|+.||..+|+.+.|..++.||++.+|++
T Consensus       218 ---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          218 ---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             ---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             ---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence               9999999999999963  3  366899999999999999999999999999999875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.86  E-value=1.3e-18  Score=197.81  Aligned_cols=286  Identities=10%  Similarity=-0.009  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~  424 (697)
                      .+.+..+++.+.+. |.+...|..++..+..             .++++.|..+|+++++..|... .|...+.....  
T Consensus       288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--  351 (597)
T 2xpi_A          288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFV-------------RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE--  351 (597)
T ss_dssp             HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--
Confidence            34566667766665 6778889999888875             4789999999999998776543 56655555443  


Q ss_pred             cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005434          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (697)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (697)
                                      .+..+.+..+|++++..+|.+...|...+.++.+.|++++|.+++++++ ...|.+...|...+
T Consensus       352 ----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~  414 (597)
T 2xpi_A          352 ----------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS-TMDPQFGPAWIGFA  414 (597)
T ss_dssp             ----------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHH
T ss_pred             ----------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence                            3457889999999998889999999999999999999999999999999 68899999999988


Q ss_pred             HHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS  582 (697)
Q Consensus       505 ~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~  582 (697)
                      ......|          +.+++.++|++++...|..  ...|...+..+...+  +.+..+|++++...+.      ...
T Consensus       415 ~~~~~~g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~  476 (597)
T 2xpi_A          415 HSFAIEG----------EHDQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPL  476 (597)
T ss_dssp             HHHHHHT----------CHHHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHH
T ss_pred             HHHHHcC----------CHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChH
Confidence            8888776          3788999999998776643  345555554444433  6788888888764321      233


Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHHhC------CCCC-HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434          583 LPSAIINLVIQKDGIQQAREMYKRFLAL------PRPG-LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (697)
Q Consensus       583 l~~~yl~~~~~~~~~~~AR~iy~~~i~~------~p~~-~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~  655 (697)
                      .+...+..+.+.|.+++|.++|++++..      .|.. ...|...+......|      +.+.|..+|++++...|.++
T Consensus       477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~  550 (597)
T 2xpi_A          477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK------MYDAAIDALNQGLLLSTNDA  550 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhCCCCh
Confidence            4445556667889999999999999886      3333 567888888888888      89999999999999988889


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          656 SLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       656 ~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      .+|...+..-...|+.+.|..+|+++++.-|+.
T Consensus       551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999887765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.85  E-value=7e-18  Score=181.11  Aligned_cols=360  Identities=13%  Similarity=0.043  Sum_probs=289.6

Q ss_pred             Hhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005434          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (697)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~  248 (697)
                      +.| +..+...|.+++..+|+++..|...+.... ..|+.+.|...++++++.+|.+...|..........         
T Consensus        11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~---------   80 (388)
T 1w3b_A           11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER---------   80 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC---------
Confidence            345 568899999999999999999999999886 789999999999999999999888887776544321         


Q ss_pred             HhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH
Q 005434          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (697)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~  328 (697)
                                                                                +.++.|...|+++++..|++..
T Consensus        81 ----------------------------------------------------------g~~~~A~~~~~~al~~~p~~~~  102 (388)
T 1w3b_A           81 ----------------------------------------------------------GQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             ----------------------------------------------------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHcCcchHH
Confidence                                                                      1345788899999988888877


Q ss_pred             HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (697)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~  408 (697)
                      .+..+...+...+.   .+.+...++++++..|+....|..++..+..             .++++.|...|+++++..|
T Consensus       103 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~p  166 (388)
T 1w3b_A          103 GYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-------------LGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCC
Confidence            77777666655442   3567888888999999999889888888764             4778999999999998877


Q ss_pred             chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (697)
Q Consensus       409 ~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~  487 (697)
                      ... .|.........                  .+..+.|...|++++..+|.+...|...+..+...|++++|...+++
T Consensus       167 ~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  228 (388)
T 1w3b_A          167 NFAVAWSNLGCVFNA------------------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             TCHHHHHHHHHHHHT------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            643 44433332221                  35578899999999999999999999999999999999999999999


Q ss_pred             HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005434          488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA  567 (697)
Q Consensus       488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a  567 (697)
                      ++ ...|++...|..........+          +.+.+.+.|++++...|..  ...|...                  
T Consensus       229 al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~--~~~~~~l------------------  277 (388)
T 1w3b_A          229 AL-SLSPNHAVVHGNLACVYYEQG----------LIDLAIDTYRRAIELQPHF--PDAYCNL------------------  277 (388)
T ss_dssp             HH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSC--HHHHHHH------------------
T ss_pred             HH-hhCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCC--HHHHHHH------------------
Confidence            99 788988888888777776665          3678888888888765532  2222211                  


Q ss_pred             HHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434          568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA  647 (697)
Q Consensus       568 ~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a  647 (697)
                                          ...+...|++++|...|++++...|.+...+...+.+....+      +.+.|..+|+++
T Consensus       278 --------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~a  331 (388)
T 1w3b_A          278 --------------------ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKA  331 (388)
T ss_dssp             --------------------HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred             --------------------HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence                                122345689999999999999999999999888888888888      899999999999


Q ss_pred             HhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          648 LATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       648 l~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      +...|.++..|...+..-...|+.+.|...|+++++.-|+.
T Consensus       332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            99988889999999999999999999999999999876544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=1.9e-19  Score=187.70  Aligned_cols=247  Identities=13%  Similarity=0.202  Sum_probs=193.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccch-hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005434           90 PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDF-SGVARILEIYRLAVMRFKGDIELWFKYMEFC  168 (697)
Q Consensus        90 ~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~iyeral~~~p~~~~lW~~y~~~~  168 (697)
                      .+..-|.+||+||.+.                         +....+. ...+++..+|++++..+|++.++|..|+.++
T Consensus         6 ~~~~~W~~yi~~E~~~-------------------------~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~   60 (308)
T 2ond_A            6 QQVDMWKKYIQWEKSN-------------------------PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL   60 (308)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------------TTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC-------------------------cccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3567899999998531                         0011111 2347899999999999999999999999998


Q ss_pred             HH-------hcC--------chHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH-HHHH
Q 005434          169 RQ-------RKN--------GRMKKVLAQVIR-FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE-LWVE  231 (697)
Q Consensus       169 ~~-------~~~--------~~~~~~~~ral~-~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~-lW~~  231 (697)
                      ..       .|.        ..++.+|++|+. .+|+++.+|+.++.++. ..|+++.|+.+|+++++..|.+.. +|..
T Consensus        61 ~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~  139 (308)
T 2ond_A           61 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQ  139 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHH
T ss_pred             HHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHH
Confidence            64       243        579999999999 69999999999999995 899999999999999999998876 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhH
Q 005434          232 YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV  311 (697)
Q Consensus       232 y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (697)
                      |+.++...+                                                                   +.+.
T Consensus       140 ~~~~~~~~~-------------------------------------------------------------------~~~~  152 (308)
T 2ond_A          140 YMKFARRAE-------------------------------------------------------------------GIKS  152 (308)
T ss_dssp             HHHHHHHHH-------------------------------------------------------------------CHHH
T ss_pred             HHHHHHHhc-------------------------------------------------------------------CHHH
Confidence            998876432                                                                   2346


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (697)
Q Consensus       312 a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~  391 (697)
                      |+.+|++|++..|.+..+|                                     ...+..+...            .+
T Consensus       153 A~~~~~~a~~~~p~~~~~~-------------------------------------~~~a~~~~~~------------~~  183 (308)
T 2ond_A          153 GRMIFKKAREDARTRHHVY-------------------------------------VTAALMEYYC------------SK  183 (308)
T ss_dssp             HHHHHHHHHTSTTCCTHHH-------------------------------------HHHHHHHHHT------------SC
T ss_pred             HHHHHHHHHhcCCCCHHHH-------------------------------------HHHHHHHHHH------------cC
Confidence            7888888887666543333                                     2222332110            25


Q ss_pred             HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc---CC-CcHHHHH
Q 005434          392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---GC-LTEDIAH  466 (697)
Q Consensus       392 ~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~---~~-~~~~lw~  466 (697)
                      +.+.|+.+|++|++..|... +|..|+.++..                  .+..++|+.+|++|+..   +| ....+|.
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------------------~g~~~~A~~~~~~al~~~~l~p~~~~~l~~  245 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH------------------LNEDNNTRVLFERVLTSGSLPPEKSGEIWA  245 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            68889999999999888654 88888888754                  24578999999999996   34 3678999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCCcH
Q 005434          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (697)
Q Consensus       467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (697)
                      .|+.++...|+.++|..++++++ ..+|++.
T Consensus       246 ~~~~~~~~~g~~~~a~~~~~~a~-~~~p~~~  275 (308)
T 2ond_A          246 RFLAFESNIGDLASILKVEKRRF-TAFREEY  275 (308)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHH-HHTTTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-HHccccc
Confidence            99999999999999999999999 7888743

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.84  E-value=3.1e-17  Score=186.31  Aligned_cols=436  Identities=11%  Similarity=-0.054  Sum_probs=320.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC-------------------HHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------------------PGVWIYAAA  199 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~-------------------~~lW~~~a~  199 (697)
                      ...+..+|++++. .|.+...|...+....+.| ...+..+|++   ..|..                   +..|...+.
T Consensus       133 ~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (597)
T 2xpi_A          133 YARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ  208 (597)
T ss_dssp             HHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHH
Confidence            4566778887754 4788999999998888777 4678888886   34554                   788999988


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCC
Q 005434          200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP  279 (697)
Q Consensus       200 ~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  279 (697)
                      ... ..|+++.|+.+|+++++..|.+...|...+.+..............+.... ..+.++. .....|.        .
T Consensus       209 ~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-~~~~~~~--------~  277 (597)
T 2xpi_A          209 VYT-NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST-YSKEDAA-FLRSLYM--------L  277 (597)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHH-HHGGGHH-HHHHHHH--------T
T ss_pred             HHH-HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcc-cccchHH-HHHHHHH--------H
Confidence            885 789999999999999999999888888776543221111110000000000 0000000 0000000        0


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhh
Q 005434          280 LDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD  359 (697)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~  359 (697)
                      .                   .......++++.|..+|+.+++. |.+...|..+...+...+   ..+.+..+++++++.
T Consensus       278 ~-------------------~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~  334 (597)
T 2xpi_A          278 K-------------------LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRS---RFIDVLAITTKILEI  334 (597)
T ss_dssp             T-------------------SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred             H-------------------HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHc
Confidence            0                   00011223567899999998876 667788888888776654   357889999999999


Q ss_pred             CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCc
Q 005434          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPS  438 (697)
Q Consensus       360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~  438 (697)
                      .|++...|..++..+..             .++.+.|..+|+++++..|... .|...+.....                
T Consensus       335 ~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------  385 (597)
T 2xpi_A          335 DPYNLDVYPLHLASLHE-------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC----------------  385 (597)
T ss_dssp             CTTCCTTHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH----------------
T ss_pred             CcccHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----------------
Confidence            99999999999888865             5789999999999998777643 55554444332                


Q ss_pred             hhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434          439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (697)
Q Consensus       439 ~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~  518 (697)
                        .+..+.|...|++++..+|.+...|...+..+.+.|++++|.+++++++ ...|++...|...+......|       
T Consensus       386 --~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-------  455 (597)
T 2xpi_A          386 --VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQGTHLPYLFLGMQHMQLG-------  455 (597)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTTTCSHHHHHHHHHHHHHT-------
T ss_pred             --hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcC-------
Confidence              3568899999999999999999999999999999999999999999999 788999999999888887776       


Q ss_pred             CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCC-CChHHHHHHHHHHhC
Q 005434          519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESG-FSLPSAIINLVIQKD  595 (697)
Q Consensus       519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~-~~l~~~yl~~~~~~~  595 (697)
                         +++++.++|++++...|..  ...|...+..+...+  +.+..+|++++...+.....+.. ..++......+...|
T Consensus       456 ---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  530 (597)
T 2xpi_A          456 ---NILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK  530 (597)
T ss_dssp             ---CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred             ---CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence               4789999999999876643  456766666555554  67888899988764332111011 234444556677899


Q ss_pred             CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434          596 GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS  663 (697)
Q Consensus       596 ~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~  663 (697)
                      ++++|..+|++++...|.+...|...+.+....|      +.+.|...|+++++..|.++..|.....
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~~~l~~  592 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK------IPGLAITHLHESLAISPNEIMASDLLKR  592 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            9999999999999999989999999998888888      8999999999999999988877766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.77  E-value=1.2e-15  Score=166.64  Aligned_cols=260  Identities=10%  Similarity=-0.006  Sum_probs=189.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      ..+..++...|.+...|...+......| +..+..+|++++..+|.++..|...+.... ..|+.+.|...|++++...|
T Consensus        13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p   91 (450)
T 2y4t_A           13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKM   91 (450)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence            5667778899999999999999888877 578999999999999999999999999886 79999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhh
Q 005434          224 TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDL  303 (697)
Q Consensus       224 ~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (697)
                      .+...|...+......                                                                
T Consensus        92 ~~~~~~~~l~~~~~~~----------------------------------------------------------------  107 (450)
T 2y4t_A           92 DFTAARLQRGHLLLKQ----------------------------------------------------------------  107 (450)
T ss_dssp             TCHHHHHHHHHHHHHT----------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHc----------------------------------------------------------------
Confidence            9877776665443221                                                                


Q ss_pred             hhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCC
Q 005434          304 FREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS  380 (697)
Q Consensus       304 ~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~  380 (697)
                         +..+.|..+|+++++..|++.   ..+..+...+..                         ..+...|..+..    
T Consensus       108 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~----  155 (450)
T 2y4t_A          108 ---GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------------QRLRSQALNAFG----  155 (450)
T ss_dssp             ---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH----
T ss_pred             ---CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH----
Confidence               134578889999998888765   454444332211                         112223333332    


Q ss_pred             CCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCC
Q 005434          381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC  459 (697)
Q Consensus       381 ~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~  459 (697)
                               .++++.|...|+++++..|... .+.........                  .+..+.|...|++++..+|
T Consensus       156 ---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~  208 (450)
T 2y4t_A          156 ---------SGDYTAAIAFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKN  208 (450)
T ss_dssp             ---------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCGGGGHHHHHHHHHHHC
T ss_pred             ---------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCC
Confidence                     3678999999999998877654 44444433332                  2446789999999999999


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH------------HHHHHHhcccCCCCCCccchHHHH
Q 005434          460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR------------ISVEIRCVTRNSFSPSKADILSIF  527 (697)
Q Consensus       460 ~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~------------i~l~~~~~~~~~~~~~~~~~~~~~  527 (697)
                      .++..|...+..+...|++++|...+++++ ...|++...|..+            .......+          +.+++.
T Consensus       209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~A~  277 (450)
T 2y4t_A          209 DNTEAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG----------RYTDAT  277 (450)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHH
Confidence            999999999999999999999999999999 7889988888765            33333333          367777


Q ss_pred             HHHHHHHhhcCh
Q 005434          528 ELLKCILTKVSA  539 (697)
Q Consensus       528 ~~f~~al~~~p~  539 (697)
                      +.|++++...|.
T Consensus       278 ~~~~~~l~~~p~  289 (450)
T 2y4t_A          278 SKYESVMKTEPS  289 (450)
T ss_dssp             HHHHHHHHHCCS
T ss_pred             HHHHHHHhcCCc
Confidence            777777775553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.9e-15  Score=167.58  Aligned_cols=275  Identities=9%  Similarity=-0.033  Sum_probs=208.5

Q ss_pred             CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhh-----c--CCchh--------HHHHHHHHHHHHhc
Q 005434          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALK-----N--VPSSM--------IFDLYTKFLMDMIA  425 (697)
Q Consensus       361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~-----~--~~~~~--------lw~~yi~~~~~~~~  425 (697)
                      |+++..|...+...+...          ..++++.|...|+++++     .  .|...        .|........    
T Consensus       183 ~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  248 (514)
T 2gw1_A          183 SNEADKELMNGLSNLYKR----------SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF----  248 (514)
T ss_dssp             SCHHHHHHHHHHHHHSSC----------CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH----
T ss_pred             CcHHHHHHHHHHHHHHhh----------hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH----
Confidence            333555666665543200          14789999999999998     3  33221        2222222111    


Q ss_pred             CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                                    ..+..+.|...|++++..+|. ...|...+..+...|++++|...+++++ ...|.+...|.....
T Consensus       249 --------------~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~  312 (514)
T 2gw1_A          249 --------------LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL-KLDSNNSSVYYHRGQ  312 (514)
T ss_dssp             --------------HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH-TTCTTCTHHHHHHHH
T ss_pred             --------------HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh-hcCcCCHHHHHHHHH
Confidence                          135588999999999999999 9999999999999999999999999999 788999999988888


Q ss_pred             HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCCh
Q 005434          506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSL  583 (697)
Q Consensus       506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l  583 (697)
                      +....+.          .+.+...|++++...|..  ...|...+..+...+  +.+...|++++...+.      ....
T Consensus       313 ~~~~~~~----------~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~  374 (514)
T 2gw1_A          313 MNFILQN----------YDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEV  374 (514)
T ss_dssp             HHHHTTC----------TTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHH
T ss_pred             HHHHhCC----------HHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHH
Confidence            8777663          688889999999876643  345555454444433  5677888888865322      2344


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHhc---cCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434          584 PSAIINLVIQKDGIQQAREMYKRFLALPRPGLV------LYQNCIELENN---LASVGDKDSLVNARKLFESALATYDQN  654 (697)
Q Consensus       584 ~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~------~~~~~i~lE~~---~~~~~~~~~~~raR~lye~al~~~~~~  654 (697)
                      +..........|++++|...|++++...|....      .+...+.+...   .+      +.+.|...|++++...|.+
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE------NFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT------HHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC------CHHHHHHHHHHHHHhCccc
Confidence            445555667889999999999999997666533      67777777777   77      8999999999999999988


Q ss_pred             chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          655 TSLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       655 ~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      +..|...+......|+.+.|...|++++...++..
T Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            99999999999999999999999999999887653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.76  E-value=4.4e-15  Score=165.93  Aligned_cols=410  Identities=9%  Similarity=0.009  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ...|...+....+.| +..+...|++++..+|+++.+|...+...+ ..|+.+.|...|++++...|++...|...+...
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            455566666666666 567888888888888888888888888775 678888888888888888888888888777776


Q ss_pred             HHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHH
Q 005434          237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY  316 (697)
Q Consensus       237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy  316 (697)
                      ...+....+...+ . ...   .+|.  ....+                              ....+.......+..+|
T Consensus       104 ~~~g~~~~A~~~~-~-~~~---~~~~--~~~~~------------------------------~~~~~~~~~~~~a~~~~  146 (537)
T 3fp2_A          104 ESLGNFTDAMFDL-S-VLS---LNGD--FDGAS------------------------------IEPMLERNLNKQAMKVL  146 (537)
T ss_dssp             HHHTCHHHHHHHH-H-HHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHH-H-HHh---cCCC--CChHH------------------------------HHHHHHHHHHHHHHHHH
Confidence            6655444443322 1 000   0000  00000                              00000111234566667


Q ss_pred             HHHHhcCCC--------chH-----------------------------HHHHHHHHHHH----ccc-cCcHHHHHHHHH
Q 005434          317 SGAVEALPS--------SFN-----------------------------LRQRFFEIVEA----TNL-AQSDDMHDKILS  354 (697)
Q Consensus       317 ~~al~~~p~--------~~~-----------------------------~~~~~~~~~~~----fe~-~~~~~~~~~il~  354 (697)
                      +.++...|.        ...                             +...+..++..    +.. ......+..+++
T Consensus       147 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~  226 (537)
T 3fp2_A          147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH  226 (537)
T ss_dssp             HHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            766654221        100                             11111111100    000 002356777889


Q ss_pred             HHHhhCCCChhhHHHHH-------HhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCC
Q 005434          355 DMQRDFLVDPKYWDWLA-------RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPK  427 (697)
Q Consensus       355 ~~~~~~p~~~~~w~~~a-------~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~  427 (697)
                      .+++..|+++..|..++       ..+..             .++++.|...|+++++..|+...|......   ..   
T Consensus       227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~---~~---  287 (537)
T 3fp2_A          227 SLLSANTVDDPLRENAALALCYTGIFHFL-------------KNNLLDAQVLLQESINLHPTPNSYIFLALT---LA---  287 (537)
T ss_dssp             HHHC--CCCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHHH---TC---
T ss_pred             HHHHHCCCcchhhHHHHHHHHHHHHHHHh-------------cccHHHHHHHHHHHHhcCCCchHHHHHHHH---HH---
Confidence            99999999977654443       44332             467899999999999988873333322211   11   


Q ss_pred             cccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          428 KEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                                  ..+..+.|...|++++..+|.++.+|...+..+...|++++|...+++++ ...|.+...|.....+.
T Consensus       288 ------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~  354 (537)
T 3fp2_A          288 ------------DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ-SLNPENVYPYIQLACLL  354 (537)
T ss_dssp             ------------CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCSHHHHHHHHHH
T ss_pred             ------------HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence                        12457899999999999999999999999999999999999999999999 78899989998888888


Q ss_pred             HHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChH-
Q 005434          508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP-  584 (697)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~-  584 (697)
                      ...+          +.+.+.+.|++++...|..  ..+|..++..+...+  +.+...|++++...+.....  ...+. 
T Consensus       355 ~~~g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~  420 (537)
T 3fp2_A          355 YKQG----------KFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI--HVGIGP  420 (537)
T ss_dssp             HHTT----------CHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC--SSTTHH
T ss_pred             HHcC----------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh--HHHHHH
Confidence            7766          4789999999999877643  355665555555444  57888899988765443211  12221 


Q ss_pred             -HHHHHHHHHh----------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434          585 -SAIINLVIQK----------DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (697)
Q Consensus       585 -~~yl~~~~~~----------~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~  653 (697)
                       ......+...          |++++|...|++++...|.+...+...+.+....|      +.+.|...|++++...|+
T Consensus       421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME------KIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCCC
Confidence             1112233445          89999999999999999999998888888888888      899999999999999986


Q ss_pred             CchH
Q 005434          654 NTSL  657 (697)
Q Consensus       654 ~~~l  657 (697)
                      .++.
T Consensus       495 ~~~~  498 (537)
T 3fp2_A          495 MDEK  498 (537)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            6543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.3e-15  Score=166.91  Aligned_cols=439  Identities=10%  Similarity=0.010  Sum_probs=289.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...| +...|...+..+...| +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus        22 ~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~   99 (514)
T 2gw1_A           22 YDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLSVL   99 (514)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            5678899999999999 6899999998888877 578999999999999999999999999986 899999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC-CCCcchhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG-SQPENMES  297 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  297 (697)
                      +...|.+.......+..-.......... ..++...... ..+.  .            +........... .....   
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-~~~~--~------------~~~~~~~~~~~~~~~~~~---  160 (514)
T 2gw1_A          100 SLNGDFNDASIEPMLERNLNKQAMSKLK-EKFGDIDTAT-ATPT--E------------LSTQPAKERKDKQENLPS---  160 (514)
T ss_dssp             HHSSSCCGGGTHHHHHHHHHHHHHHHHT-TC------------------------------------------CCCC---
T ss_pred             HhcCCCccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-Hhhh--h------------ccCChhhHHHhhccCCch---
Confidence            9999976554444433322211110000 0000000000 0000  0            000000000000 00000   


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHh-----h--CC-
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEA--------LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR-----D--FL-  361 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~--------~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~-----~--~p-  361 (697)
                                 ...+ ..+......        -|++...+......+..+......+.+..+++++++     .  .| 
T Consensus       161 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  228 (514)
T 2gw1_A          161 -----------VTSM-ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE  228 (514)
T ss_dssp             -----------HHHH-HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred             -----------hHHH-HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence                       0000 000000000        022222222221111111111235667777777776     3  44 


Q ss_pred             ------CChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCC
Q 005434          362 ------VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSE  435 (697)
Q Consensus       362 ------~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~  435 (697)
                            ..+..|..++..+..             .++++.|...|+++++..|....|.........             
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-------------  282 (514)
T 2gw1_A          229 DEKLKEKLAISLEHTGIFKFL-------------KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-------------  282 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-------------SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-------------
T ss_pred             ccccChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-------------
Confidence                  335567788887765             478999999999999988872233332222221             


Q ss_pred             CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434          436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS  515 (697)
Q Consensus       436 ~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~  515 (697)
                           .+..+.+...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+...|.....+....+    
T Consensus       283 -----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----  352 (514)
T 2gw1_A          283 -----RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-ELDPENIFPYIQLACLAYREN----  352 (514)
T ss_dssp             -----SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-HTCSSCSHHHHHHHHHTTTTT----
T ss_pred             -----CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhChhhHHHHHHHHHHHHHcC----
Confidence                 2345678899999999999999999999999999999999999999999 788998888888777665554    


Q ss_pred             CCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434          516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ  593 (697)
Q Consensus       516 ~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~  593 (697)
                            +.+.+.+.|++++...|..  ...|...+..+...+  +.+...|++++...+...........+.........
T Consensus       353 ------~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          353 ------KFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             ------CHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             ------CHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence                  4788999999999876643  345655555444444  677888888887654332100001134444555667


Q ss_pred             ---hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHH
Q 005434          594 ---KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY  661 (697)
Q Consensus       594 ---~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y  661 (697)
                         .|++++|...|++++...|.....+...+.+....|      +.+.|...|++++...|++++.|...
T Consensus       425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE------DIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhccccHHHHHHH
Confidence               899999999999999999988888888888888888      89999999999999999888777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.73  E-value=1.5e-14  Score=152.02  Aligned_cols=335  Identities=10%  Similarity=0.019  Sum_probs=244.4

Q ss_pred             CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHH
Q 005434          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (697)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~  235 (697)
                      +++.|...+......| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|++...|...+.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            4677888888777777 578999999999999999999999999886 78999999999999999999888777666544


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHH
Q 005434          236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI  315 (697)
Q Consensus       236 E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i  315 (697)
                      ....                                                                   ++.+.|...
T Consensus        81 ~~~~-------------------------------------------------------------------~~~~~A~~~   93 (359)
T 3ieg_A           81 LLKQ-------------------------------------------------------------------GKLDEAEDD   93 (359)
T ss_dssp             HHHH-------------------------------------------------------------------TCHHHHHHH
T ss_pred             HHHc-------------------------------------------------------------------CChHHHHHH
Confidence            3321                                                                   124567888


Q ss_pred             HHHHHhcCC---CchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434          316 YSGAVEALP---SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (697)
Q Consensus       316 y~~al~~~p---~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~  392 (697)
                      |+++++..|   ++...+..+..+..                         ...+...|..+..             .++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~-------------~~~  135 (359)
T 3ieg_A           94 FKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD-------------GAD  135 (359)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------TTC
T ss_pred             HHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------ccC
Confidence            888888877   55444333221110                         1123334455443             477


Q ss_pred             HHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005434          393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL  471 (697)
Q Consensus       393 ~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l  471 (697)
                      ++.|...|+++++..|... .|.........                  .+..+.|...|++++..+|.++..|...+..
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  197 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKSDNTEAFYKISTL  197 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8999999999999888654 44333333222                  3557899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH------------HHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434          472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV------------EIRCVTRNSFSPSKADILSIFELLKCILTKVSA  539 (697)
Q Consensus       472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l------------~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~  539 (697)
                      +...|++++|...+++++ ...|++...|..+..+            ....+          +.+++.+.|++++...|.
T Consensus       198 ~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~~~~~~~~  266 (359)
T 3ieg_A          198 YYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG----------RYTDATSKYESVMKTEPS  266 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCCS
T ss_pred             HHHcCCHHHHHHHHHHHH-hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCC
Confidence            999999999999999999 7889988877655332            22222          356666667776665543


Q ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHH
Q 005434          540 LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ  619 (697)
Q Consensus       540 ~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~  619 (697)
                      .  ..+|...                                  ...........|++++|...|++++...|.+...+.
T Consensus       267 ~--~~~~~~~----------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (359)
T 3ieg_A          267 V--AEYTVRS----------------------------------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK  310 (359)
T ss_dssp             S--HHHHHHH----------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             c--hHHHHHH----------------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence            2  1111110                                  001122234578899999999999998888888888


Q ss_pred             HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhc
Q 005434          620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKL  668 (697)
Q Consensus       620 ~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~  668 (697)
                      ..+.+....|      +.+.|...|+++++..|+++.+|..........
T Consensus       311 ~~~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          311 DRAEAYLIEE------MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            8888888888      889999999999999888888888777665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.72  E-value=2.9e-14  Score=159.32  Aligned_cols=414  Identities=12%  Similarity=0.028  Sum_probs=266.7

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      ..+...|++++...|++...|...+......| +..+...|++++..+|+++..|...+.... ..|+.+.|...|+ ++
T Consensus        42 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~-~~  119 (537)
T 3fp2_A           42 NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE-SLGNFTDAMFDLS-VL  119 (537)
T ss_dssp             C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HcCCHHHHHHHHH-HH
Confidence            35668999999999999999999999888877 578999999999999999999999999986 7999999999995 99


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccc----------chhhHhhhhhccccCCCCCCCCCCCC
Q 005434          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVR-DHR----------DADEKRWINENKGLFMPLDGEVENTD  288 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~-~~~----------~~~~~~w~~~~~~~~~~~~~~~~~~~  288 (697)
                      ...|+....|....--..........-...++..+...+. .|.          ....... .       .+.... ..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~~  190 (537)
T 3fp2_A          120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV-S-------SVNTSS-NYD  190 (537)
T ss_dssp             C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH-H-------TSCCCC-SSC
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH-H-------HHhhcc-ccc
Confidence            9988765554332111111111111111122210000000 000          0000000 0       000000 000


Q ss_pred             CCCCcchhhhhhhhh--------h--hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHcc----ccCcHHHHHHHHH
Q 005434          289 GSQPENMESQKSVDL--------F--REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN----LAQSDDMHDKILS  354 (697)
Q Consensus       289 ~~~~~~~~~~~~~~~--------~--~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe----~~~~~~~~~~il~  354 (697)
                      .   ....+......        +  ....++.|..+|+++++..|++.+.+..+...+...+    .....+.+...++
T Consensus       191 ~---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  267 (537)
T 3fp2_A          191 T---AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ  267 (537)
T ss_dssp             S---SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            0   00000000000        0  1124678999999999988988766544433332211    1124578889999


Q ss_pred             HHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccC
Q 005434          355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD  433 (697)
Q Consensus       355 ~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~  433 (697)
                      .+++..|+ +..|..++..+..             .++++.|...|+++++..|... .|.........           
T Consensus       268 ~~~~~~~~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------  322 (537)
T 3fp2_A          268 ESINLHPT-PNSYIFLALTLAD-------------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-----------  322 (537)
T ss_dssp             HHHHHCCC-HHHHHHHHHHTCC-------------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------
T ss_pred             HHHhcCCC-chHHHHHHHHHHH-------------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-----------
Confidence            99999999 8889999998865             4778999999999999888653 44444433332           


Q ss_pred             CCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc
Q 005434          434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR  513 (697)
Q Consensus       434 ~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~  513 (697)
                             .+..+.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|++..+|.....+....+  
T Consensus       323 -------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g--  392 (537)
T 3fp2_A          323 -------LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK-LKFPTLPEVPTFFAEILTDRG--  392 (537)
T ss_dssp             -------TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT--
T ss_pred             -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhC--
Confidence                   3558899999999999999999999999999999999999999999999 789999999998888887766  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhh----------h--HHHHHHHHHHHHhhhhCCCC
Q 005434          514 NSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQ----------K--HYFDKLVEIALISVAKDGGG  577 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~----------~--~~~~~l~~~a~~~~~~~~~~  577 (697)
                              +.+.+.+.|++++...|...    ....+...+..+...          +  +.+...|++++...+.    
T Consensus       393 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~----  460 (537)
T 3fp2_A          393 --------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR----  460 (537)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT----
T ss_pred             --------CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC----
Confidence                    47889999999998654322    111111112222222          3  5677888888764321    


Q ss_pred             CCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434          578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL  617 (697)
Q Consensus       578 ~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~  617 (697)
                        ....+..........|++++|...|++++...|.....
T Consensus       461 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          461 --SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred             --CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence              23334444555678899999999999999998877654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.70  E-value=1.2e-13  Score=145.07  Aligned_cols=311  Identities=11%  Similarity=0.011  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|...+......| +..+...|++++...|.++..|...+.... ..|+.+.|...|+++
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKV   97 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999999986 789999999999999


Q ss_pred             hhhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434          219 LRVCP---TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (697)
Q Consensus       219 l~~~p---~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (697)
                      +...|   ++...|..+..+.........+.                                                 
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------------------------------------------------  128 (359)
T 3ieg_A           98 LKSNPSEQEEKEAESQLVKADEMQRLRSQAL-------------------------------------------------  128 (359)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             HhcCCcccChHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence            99999   77788877765543221111000                                                 


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhc
Q 005434          296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM  375 (697)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l  375 (697)
                            .....++.+.|..+|+++++..|.+...+..+...+...+   ..+.+...++.+++..|+++..|..++..+.
T Consensus       129 ------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  199 (359)
T 3ieg_A          129 ------DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKSDNTEAFYKISTLYY  199 (359)
T ss_dssp             ------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             ------HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                  0011124578999999999999998888877777666543   4578899999999999999999999999987


Q ss_pred             ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHH-------HHHhcCCcccccCCCCCchhHhHHHHH
Q 005434          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL-------MDMIAPKKEETRDSELPSHVEHYISHL  447 (697)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a  447 (697)
                      .             .++++.|...|+++++..|+.. .|..|....       .....             ...+..+.|
T Consensus       200 ~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------------~~~~~~~~A  253 (359)
T 3ieg_A          200 Q-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL-------------IRDGRYTDA  253 (359)
T ss_dssp             H-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-------------HHTTCHHHH
T ss_pred             H-------------cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH-------------HHcCCHHHH
Confidence            5             5789999999999999888764 444443221       00000             023568899


Q ss_pred             HHHHHHHHHcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccch
Q 005434          448 LTVYEKAEAMGCLTEDI----AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADI  523 (697)
Q Consensus       448 r~~ye~al~~~~~~~~l----w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~  523 (697)
                      ...|++++...|.++..    +...+..+...|++++|...+++++ ...|++...|.....+....|          +.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g----------~~  322 (359)
T 3ieg_A          254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL-QMEPDNVNALKDRAEAYLIEE----------MY  322 (359)
T ss_dssp             HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CH
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CH
Confidence            99999999999988754    5567888999999999999999999 789999999999998888776          47


Q ss_pred             HHHHHHHHHHHhhcChhhhHHHHHH
Q 005434          524 LSIFELLKCILTKVSALESESLWLM  548 (697)
Q Consensus       524 ~~~~~~f~~al~~~p~~~~~~lW~~  548 (697)
                      +++.+.|+++++..|..  ..+|..
T Consensus       323 ~~A~~~~~~a~~~~p~~--~~~~~~  345 (359)
T 3ieg_A          323 DEAIQDYEAAQEHNEND--QQIREG  345 (359)
T ss_dssp             HHHHHHHHHHHTTCTTC--HHHHHH
T ss_pred             HHHHHHHHHHHhcCCCC--hHHHHH
Confidence            89999999999877643  345543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.69  E-value=1.5e-13  Score=149.85  Aligned_cols=315  Identities=11%  Similarity=0.026  Sum_probs=246.9

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+..+|++++...|++...|...+..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKV  120 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999999986 799999999999999


Q ss_pred             hhhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434          219 LRVCPTSE---ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (697)
Q Consensus       219 l~~~p~~~---~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (697)
                      +...|.+.   ..|...+...........+.                                                 
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------------------------------------------------  151 (450)
T 2y4t_A          121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQAL-------------------------------------------------  151 (450)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             HhcCCCChhhHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence            99999988   88877766643221110000                                                 


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhc
Q 005434          296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM  375 (697)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l  375 (697)
                            ..+..++++.|..+|+++++..|.+...+..+..++...+   ..+.+..+++++++..|+++..|..++..+.
T Consensus       152 ------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  222 (450)
T 2y4t_A          152 ------NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYY  222 (450)
T ss_dssp             ------HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             ------HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                  0111234678999999999999998888888877776654   3467888899999999999999999999887


Q ss_pred             ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHH--HHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (697)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye  452 (697)
                      .             .++++.|...|+++++..|... .|..+.....  .....  ..      .-...+..+.|...|+
T Consensus       223 ~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~g~~~~A~~~~~  281 (450)
T 2y4t_A          223 Q-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES--AE------ELIRDGRYTDATSKYE  281 (450)
T ss_dssp             H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH--HH------HHHHHTCHHHHHHHHH
T ss_pred             H-------------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH--HH------HHHHcCCHHHHHHHHH
Confidence            5             4789999999999999888654 4443311100  00000  00      0002356889999999


Q ss_pred             HHHHcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434          453 KAEAMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (697)
Q Consensus       453 ~al~~~~~~~~----lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~  528 (697)
                      +++...|.++.    +|...+.++.+.|++++|...+++++ ...|++...|..........+          +.+.+.+
T Consensus       282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~  350 (450)
T 2y4t_A          282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL-QMEPDNVNALKDRAEAYLIEE----------MYDEAIQ  350 (450)
T ss_dssp             HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhc----------CHHHHHH
Confidence            99999998754    67888999999999999999999999 788999999999888887776          4789999


Q ss_pred             HHHHHHhhcChhhhHHHHH
Q 005434          529 LLKCILTKVSALESESLWL  547 (697)
Q Consensus       529 ~f~~al~~~p~~~~~~lW~  547 (697)
                      .|+++++..|..  ..+|.
T Consensus       351 ~~~~al~~~p~~--~~~~~  367 (450)
T 2y4t_A          351 DYETAQEHNEND--QQIRE  367 (450)
T ss_dssp             HHHHHHTTSSSC--HHHHH
T ss_pred             HHHHHHHhCcch--HHHHH
Confidence            999999876643  34444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.61  E-value=4.8e-13  Score=138.85  Aligned_cols=265  Identities=9%  Similarity=0.012  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQN  217 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-~~~~aR~~~~r  217 (697)
                      ...+..+|++++...|.+...|..++..+...| ...+...|++++..+|.++..|...+.... ..| +.+.|...|++
T Consensus        38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~  116 (330)
T 3hym_B           38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSK  116 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Confidence            566788999999999999999998888877776 578999999999999999999999999886 678 99999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      ++...|.....|...+.+....                                                          
T Consensus       117 a~~~~~~~~~~~~~l~~~~~~~----------------------------------------------------------  138 (330)
T 3hym_B          117 ATTLEKTYGPAWIAYGHSFAVE----------------------------------------------------------  138 (330)
T ss_dssp             HHTTCTTCTHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred             HHHhCCccHHHHHHHHHHHHHc----------------------------------------------------------
Confidence            9999999888887766544321                                                          


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~  377 (697)
                               ++.+.|...|+++++..|.+...+..+...+...+   ..+.+...++++++..|+++..|..++..+.. 
T Consensus       139 ---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-  205 (330)
T 3hym_B          139 ---------SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN---NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-  205 (330)
T ss_dssp             ---------TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred             ---------cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Confidence                     13457888999999988887666666655554433   45789999999999999999999999998875 


Q ss_pred             CCCCCCCCcCccchHHHHHHHHHHHHhhcCC---------c-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---------S-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL  447 (697)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~---------~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  447 (697)
                                  .++++.|...|+++++..+         . ...|.........                  .+..+.|
T Consensus       206 ------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A  255 (330)
T 3hym_B          206 ------------NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK------------------LKKYAEA  255 (330)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH------------------TTCHHHH
T ss_pred             ------------cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH------------------hcCHHHH
Confidence                        4789999999999998652         2 1244444433322                  3558899


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                      ...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|.......
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH-ccCCCchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999 78999998888777644

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.57  E-value=1e-12  Score=136.29  Aligned_cols=280  Identities=12%  Similarity=0.020  Sum_probs=215.0

Q ss_pred             HHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccc
Q 005434          353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEET  431 (697)
Q Consensus       353 l~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~  431 (697)
                      +...+...|+++..+...|.....             .++++.|..+|+++++..|... .+..++.....         
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~-------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~---------   68 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYY-------------NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE---------   68 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH---------
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH---------
Confidence            334556677888888888888775             4789999999999999888654 44444444332         


Q ss_pred             cCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434          432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (697)
Q Consensus       432 ~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~-~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (697)
                               .+..+.+...|++++..+|.++..|...+..+...| ++++|...+++++ ...|.+...|.....+....
T Consensus        69 ---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~  138 (330)
T 3hym_B           69 ---------LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTYGPAWIAYGHSFAVE  138 (330)
T ss_dssp             ---------HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH-TTCTTCTHHHHHHHHHHHHH
T ss_pred             ---------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHc
Confidence                     345789999999999999999999999999999999 9999999999999 78899999999888888776


Q ss_pred             cccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHH
Q 005434          511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII  588 (697)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl  588 (697)
                      +          +.+.+.+.|++++...|...  ..|...+..+...+  +.+...|++++...+.      ...++....
T Consensus       139 ~----------~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~  200 (330)
T 3hym_B          139 S----------EHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVG  200 (330)
T ss_dssp             T----------CHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHH
T ss_pred             c----------CHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHH
Confidence            6          47889999999998776532  33433333333333  5677888888754221      233444455


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHH
Q 005434          589 NLVIQKDGIQQAREMYKRFLALP---------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWR  659 (697)
Q Consensus       589 ~~~~~~~~~~~AR~iy~~~i~~~---------p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~  659 (697)
                      ......|++++|...|++++...         |.....+...+.+....+      +.+.|...|++++...|.++.+|.
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~  274 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK------KYAEALDYHRQALVLIPQNASTYS  274 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHhhCccchHHHH
Confidence            55677899999999999999864         444567777787777788      899999999999999999999999


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          660 DYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       660 ~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      ..+..-...|+.+.|...|+++++..|+.
T Consensus       275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (330)
T 3hym_B          275 AIGYIHSLMGNFENAVDYFHTALGLRRDD  303 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence            99999999999999999999999877654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=1.3e-12  Score=143.59  Aligned_cols=311  Identities=12%  Similarity=0.007  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhC--------CCCHHHHHHHH--H
Q 005434          140 VARILEIYRLAVMR---------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--------PKVPGVWIYAA--A  199 (697)
Q Consensus       140 ~~r~~~iyeral~~---------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--------p~~~~lW~~~a--~  199 (697)
                      ...+...|++|+..         .|+....|...+......| +.++...|++++.+.        +..+.++...+  .
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~  146 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR  146 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence            34566677777765         5677778888877777767 578889999998863        34456655433  2


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCC
Q 005434          200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP  279 (697)
Q Consensus       200 ~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  279 (697)
                      ..+ ..++.+.|...|++++...|+++..|..+.......+.        ++                            
T Consensus       147 ~~~-~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~--------~~----------------------------  189 (472)
T 4g1t_A          147 LKC-GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--------WP----------------------------  189 (472)
T ss_dssp             HHH-CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--------SC----------------------------
T ss_pred             HHH-ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--------ch----------------------------
Confidence            332 35689999999999999999999888777654432211        01                            


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccc-cCcHHHHHHHHHHHHh
Q 005434          280 LDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-AQSDDMHDKILSDMQR  358 (697)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~-~~~~~~~~~il~~~~~  358 (697)
                                                  ..+.|...|++|++..|++...+..+...+..... ......+...+++++.
T Consensus       190 ----------------------------~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~  241 (472)
T 4g1t_A          190 ----------------------------PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE  241 (472)
T ss_dssp             ----------------------------CCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred             ----------------------------HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                                        01234567888888888876665555444433321 1234578888999999


Q ss_pred             hCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccC-CCC
Q 005434          359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD-SEL  436 (697)
Q Consensus       359 ~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~-~~~  436 (697)
                      ..|+.+..|..++..+..             .+.++.|...|+++++..|+.. .+.................... ...
T Consensus       242 ~~~~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~  308 (472)
T 4g1t_A          242 KAPGVTDVLRSAAKFYRR-------------KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG  308 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             hCccHHHHHHHHHHHHHH-------------cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999998875             4789999999999999988754 3221111111100000000000 000


Q ss_pred             CchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH---HHHHHHHHHHHhccc
Q 005434          437 PSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ---LWLLRISVEIRCVTR  513 (697)
Q Consensus       437 ~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~---lW~~~i~l~~~~~~~  513 (697)
                      ........+.+...|++++..+|.....|...+..+...|++++|...+++++ ...|+...   ++..+..+...... 
T Consensus       309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~~-  386 (472)
T 4g1t_A          309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMK-  386 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTSS-
T ss_pred             HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHCC-
Confidence            00122345678888888888888888888888888888888888888888888 45554322   23333332221111 


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhcC
Q 005434          514 NSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                              +.+.+.+.|++|++..|
T Consensus       387 --------~~~~Ai~~y~kal~i~~  403 (472)
T 4g1t_A          387 --------CEDKAIHHFIEGVKINQ  403 (472)
T ss_dssp             --------CHHHHHHHHHHHHHSCC
T ss_pred             --------CHHHHHHHHHHHHhcCc
Confidence                    34556666666665444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.53  E-value=6.4e-13  Score=140.59  Aligned_cols=283  Identities=12%  Similarity=0.021  Sum_probs=216.9

Q ss_pred             HHHHHHhhCCCCh----hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcC
Q 005434          352 ILSDMQRDFLVDP----KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP  426 (697)
Q Consensus       352 il~~~~~~~p~~~----~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~  426 (697)
                      .+++++...|+++    ..|..++..+..             .++++.|...|+++++..|... .|.........    
T Consensus        48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----  110 (368)
T 1fch_A           48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQ-------------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE----  110 (368)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHH-------------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH----
T ss_pred             hhhHHHhcCCCCcccchHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence            4444445566554    458888888775             4789999999999999888654 44333332222    


Q ss_pred             CcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH---
Q 005434          427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR---  503 (697)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~---  503 (697)
                                    .+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...   
T Consensus       111 --------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~  175 (368)
T 1fch_A          111 --------------NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL-RYTPAYAHLVTPAEEG  175 (368)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTGGGCC-----
T ss_pred             --------------CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHH
Confidence                          3567899999999999999999999999999999999999999999999 7888876666422   


Q ss_pred             ------------HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 005434          504 ------------ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALI  569 (697)
Q Consensus       504 ------------i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~  569 (697)
                                  +......+          +.+++.+.|++++...|......+|...+..+...+  +.+...|++++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  245 (368)
T 1fch_A          176 AGGAGLGPSKRILGSLLSDS----------LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS  245 (368)
T ss_dssp             ----------CTTHHHHHHH----------HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhcccHHHHHHHHHhhcc----------cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                        11122333          478889999999987775323456665555554444  577888888886


Q ss_pred             hhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHh
Q 005434          570 SVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALA  649 (697)
Q Consensus       570 ~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~  649 (697)
                      ..+.      ....+..........|++++|...|++++...|.....+...+.+....+      +.+.|...|++++.
T Consensus       246 ~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~  313 (368)
T 1fch_A          246 VRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG------AHREAVEHFLEALN  313 (368)
T ss_dssp             HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred             hCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
Confidence            5321      23334444555667899999999999999999998888888888888888      89999999999999


Q ss_pred             hCCCC-----------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          650 TYDQN-----------TSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       650 ~~~~~-----------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      ..|.+           ..+|...+..-...|+.+.|..++.+++..+.+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM  363 (368)
T ss_dssp             HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred             hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence            88855           6899999999999999999999999999887543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.51  E-value=7.8e-13  Score=140.19  Aligned_cols=269  Identities=12%  Similarity=0.011  Sum_probs=206.7

Q ss_pred             hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434          365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (697)
Q Consensus       365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (697)
                      ..|...+..+..             .++++.|...|+++++..|... .|.........                  .+.
T Consensus        66 ~~~~~~~~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~g~  114 (365)
T 4eqf_A           66 PGAFEEGLKRLK-------------EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE------------------NEN  114 (365)
T ss_dssp             TTHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTC
T ss_pred             hHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH------------------CCC
Confidence            348888888765             5889999999999999888654 44444433332                  356


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH----------HHHHHHhccc
Q 005434          444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR----------ISVEIRCVTR  513 (697)
Q Consensus       444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~----------i~l~~~~~~~  513 (697)
                      .+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|...          .......+  
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g--  191 (365)
T 4eqf_A          115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS--  191 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCHHHHCC-------------------CCH--
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH-HhCccchHHHhhhccchHHHHHHHHHHhhhh--
Confidence            8899999999999999999999999999999999999999999999 6788776666544          22222222  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH
Q 005434          514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV  591 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~  591 (697)
                              +.+++.+.|++++...|......+|......+...+  +.+...|++++...+.      ...++......+
T Consensus       192 --------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~  257 (365)
T 4eqf_A          192 --------VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATL  257 (365)
T ss_dssp             --------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence                    578899999999988775323556665555554444  6788889998875322      234444455556


Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC------------CchHHH
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ------------NTSLWR  659 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~------------~~~lW~  659 (697)
                      ...|++++|...|++++...|.....+...+.+...+|      +.+.|...|++++...|.            +..+|.
T Consensus       258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  331 (365)
T 4eqf_A          258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG------AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA  331 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC------CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence            77899999999999999999999888888888888888      889999999999998863            368999


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          660 DYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       660 ~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      .....-...|..+.+..+..+++..+..
T Consensus       332 ~l~~~~~~~g~~~~a~~~~~~~l~~~~~  359 (365)
T 4eqf_A          332 ALRIALSLMDQPELFQAANLGDLDVLLR  359 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTCCGGGTT
T ss_pred             HHHHHHHHcCcHHHHHHHHHhhHHHHHH
Confidence            9999999999999999988887666643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=1.4e-12  Score=137.92  Aligned_cols=277  Identities=13%  Similarity=0.004  Sum_probs=199.7

Q ss_pred             HHHHHHHhcCCC----HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005434          146 IYRLAVMRFKGD----IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR  220 (697)
Q Consensus       146 iyeral~~~p~~----~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~  220 (697)
                      .|++++...|++    ...|...+......| +..+...|++++..+|.++.+|...+.... ..|+++.|...|++++.
T Consensus        48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~  126 (368)
T 1fch_A           48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLE  126 (368)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHh
Confidence            566666666665    345777777666666 467888888888888888888888888775 78888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhh
Q 005434          221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKS  300 (697)
Q Consensus       221 ~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (697)
                      ..|.+..+|...+......+.                                                           
T Consensus       127 ~~~~~~~~~~~l~~~~~~~g~-----------------------------------------------------------  147 (368)
T 1fch_A          127 LKPDNQTALMALAVSFTNESL-----------------------------------------------------------  147 (368)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             cCCCCHHHHHHHHHHHHHcCC-----------------------------------------------------------
Confidence            888877777766655443221                                                           


Q ss_pred             hhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH----------------HHHHHHHccccCcHHHHHHHHHHHHhhCCC--
Q 005434          301 VDLFREQGLRVLQTIYSGAVEALPSSFNLRQR----------------FFEIVEATNLAQSDDMHDKILSDMQRDFLV--  362 (697)
Q Consensus       301 ~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~----------------~~~~~~~fe~~~~~~~~~~il~~~~~~~p~--  362 (697)
                              .+.|...|+++++..|.+...+..                +-.++ ..+   ..+.+...++++++..|+  
T Consensus       148 --------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~A~~~~~~a~~~~p~~~  215 (368)
T 1fch_A          148 --------QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS---LFLEVKELFLAAVRLDPTSI  215 (368)
T ss_dssp             --------HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH---HHHHHHHHHHHHHHHSTTSC
T ss_pred             --------HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc---cHHHHHHHHHHHHHhCcCcc
Confidence                    223444444444443333221110                00111 111   246777888899999999  


Q ss_pred             ChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhH
Q 005434          363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVE  441 (697)
Q Consensus       363 ~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~  441 (697)
                      ++..|..++..+..             .++++.|...|+++++..|... .|.........                  .
T Consensus       216 ~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------------------~  264 (368)
T 1fch_A          216 DPDVQCGLGVLFNL-------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN------------------G  264 (368)
T ss_dssp             CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------T
T ss_pred             cHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH------------------c
Confidence            78889999988875             4789999999999999887653 44444433332                  3


Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc-----------HHHHHHHHHHHHHh
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-----------VQLWLLRISVEIRC  510 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~-----------~~lW~~~i~l~~~~  510 (697)
                      +..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++           ...|..........
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  343 (368)
T 1fch_A          265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRLALSML  343 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence            558899999999999999999999999999999999999999999999 677776           88999888888777


Q ss_pred             cccCCCCCCccchHHHHHHHHHHHhh
Q 005434          511 VTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      |.          .+.+..++.+++..
T Consensus       344 g~----------~~~A~~~~~~~l~~  359 (368)
T 1fch_A          344 GQ----------SDAYGAADARDLST  359 (368)
T ss_dssp             TC----------GGGHHHHHTTCHHH
T ss_pred             CC----------hHhHHHhHHHHHHH
Confidence            64          45666666666543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.50  E-value=1.6e-12  Score=137.78  Aligned_cols=251  Identities=12%  Similarity=0.005  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ...|...+......| +..+...|++++..+|.++..|...+.... ..|+++.|...|++++...|.+...|...+...
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344777777666666 567888888888888888888888888886 788888888888888888888877776665544


Q ss_pred             HHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHH
Q 005434          237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY  316 (697)
Q Consensus       237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy  316 (697)
                      ...+                                                                   +++.|..+|
T Consensus       144 ~~~g-------------------------------------------------------------------~~~~A~~~~  156 (365)
T 4eqf_A          144 TNTS-------------------------------------------------------------------HQQDACEAL  156 (365)
T ss_dssp             HHTT-------------------------------------------------------------------CHHHHHHHH
T ss_pred             Hccc-------------------------------------------------------------------cHHHHHHHH
Confidence            3211                                                                   234566677


Q ss_pred             HHHHhcCCCchHHHHHH----------HHHHHHccccCcHHHHHHHHHHHHhhCCC--ChhhHHHHHHhhcccCCCCCCC
Q 005434          317 SGAVEALPSSFNLRQRF----------FEIVEATNLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLKMTDSVSKDGT  384 (697)
Q Consensus       317 ~~al~~~p~~~~~~~~~----------~~~~~~fe~~~~~~~~~~il~~~~~~~p~--~~~~w~~~a~~~l~~~~~~~~~  384 (697)
                      +++++..|++...+..+          ...+...   ...+.+...++++++..|+  ++..|..++..+..        
T Consensus       157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~--------  225 (365)
T 4eqf_A          157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS---SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL--------  225 (365)
T ss_dssp             HHHHHHCHHHHCC-------------------CC---HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH--------
T ss_pred             HHHHHhCccchHHHhhhccchHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH--------
Confidence            77776555433322221          1122111   1356788889999999999  78899999988875        


Q ss_pred             CcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434          385 SEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (697)
Q Consensus       385 ~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~  463 (697)
                           .++++.|...|+++++..|... .|.........                  .+..+.|...|++++..+|.++.
T Consensus       226 -----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~  282 (365)
T 4eqf_A          226 -----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN------------------GDRSEEAVEAYTRALEIQPGFIR  282 (365)
T ss_dssp             -----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             -----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCchH
Confidence                 5889999999999999888654 55555444332                  35688999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------------cHHHHHHHHHHHHHhc
Q 005434          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------------SVQLWLLRISVEIRCV  511 (697)
Q Consensus       464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~------------~~~lW~~~i~l~~~~~  511 (697)
                      .|...+..+...|++++|...+++++ ...|+            +..+|..........+
T Consensus       283 ~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          283 SRYNLGISCINLGAYREAVSNFLTAL-SLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHH-HHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999 56655            3567776665555444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=3.8e-11  Score=131.80  Aligned_cols=376  Identities=11%  Similarity=-0.045  Sum_probs=183.7

Q ss_pred             hc-CchHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--------CHHHHHHH
Q 005434          171 RK-NGRMKKVLAQVIRF---------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT--------SEELWVEY  232 (697)
Q Consensus       171 ~~-~~~~~~~~~ral~~---------~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~--------~~~lW~~y  232 (697)
                      .| ++++...|++|+.+         +|+....|...+.... ..|+.+.|...+++++..+|.        ...++...
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~  142 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE  142 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence            35 56888899999876         6667778888887775 789999999999999876542        11221111


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (697)
Q Consensus       233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (697)
                      ....+             .                                                    +....++.|
T Consensus       143 g~~~~-------------~----------------------------------------------------~~~~~y~~A  157 (472)
T 4g1t_A          143 GWTRL-------------K----------------------------------------------------CGGNQNERA  157 (472)
T ss_dssp             HHHHH-------------H----------------------------------------------------HCTTHHHHH
T ss_pred             HHHHH-------------H----------------------------------------------------HccccHHHH
Confidence            00000             0                                                    001145678


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (697)
Q Consensus       313 ~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~  392 (697)
                      ...|++|++..|++++.+..+.......+.......+...++++++..|+++..+..++.......         ...+.
T Consensus       158 ~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~---------~~~~~  228 (472)
T 4g1t_A          158 KVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR---------EEGEE  228 (472)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH---------hhhhH
Confidence            888888888888877666555444322211011122334455555666666555544432221100         01234


Q ss_pred             HHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005434          393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL  471 (697)
Q Consensus       393 ~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l  471 (697)
                      .+.|...|++++...|... .|.........                  .+..+.+...|++|+..+|.+..+|...+..
T Consensus       229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  290 (472)
T 4g1t_A          229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRR------------------KDEPDKAIELLKKALEYIPNNAYLHCQIGCC  290 (472)
T ss_dssp             -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------------------cCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            4455555555555544432 22222111111                  1334555555555555555555554444333


Q ss_pred             HHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHH
Q 005434          472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALK  551 (697)
Q Consensus       472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~  551 (697)
                      +...+..       ..+.   ......       .......         ..+.+...|++++..-|...  ..|.....
T Consensus       291 y~~~~~~-------~~~~---~~~~~~-------~~~~~~~---------~~~~A~~~~~~a~~~~~~~~--~~~~~lg~  342 (472)
T 4g1t_A          291 YRAKVFQ-------VMNL---RENGMY-------GKRKLLE---------LIGHAVAHLKKADEANDNLF--RVCSILAS  342 (472)
T ss_dssp             HHHHHHH-------HHHC----------------CHHHHHH---------HHHHHHHHHHHHHHHCTTTC--CCHHHHHH
T ss_pred             HHHHHHH-------hhhH---HHHHHH-------HHHHHHh---------hHHHHHHHHHHHhhcCCchh--hhhhhHHH
Confidence            2211000       0000   000000       0000000         23445555666655443321  12222222


Q ss_pred             HHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH-HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcc
Q 005434          552 FFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL-VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNL  628 (697)
Q Consensus       552 ~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~-~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~  628 (697)
                      .+...+  +.+...|++++..-....   ....+...|..+ ....|+.++|...|++++.+.|.+....          
T Consensus       343 ~~~~~~~~~~A~~~~~kaL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------  409 (472)
T 4g1t_A          343 LHALADQYEEAEYYFQKEFSKELTPV---AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------  409 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCCCHH---HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------
Confidence            222222  455555666554211000   000111222222 2356889999999999999988764321          


Q ss_pred             CCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          629 ASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       629 ~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      +      ....+.+++++++..+|.++..|......-...|+.+.|...|++|+..-+
T Consensus       410 ~------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~  461 (472)
T 4g1t_A          410 K------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS  461 (472)
T ss_dssp             H------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred             H------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            1      446777889999999999999999999988899999999999999997543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.48  E-value=6.9e-12  Score=129.82  Aligned_cols=151  Identities=11%  Similarity=0.000  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~  424 (697)
                      .+.+...++++++..|+++..|..++..+..             .++++.|...|+++++..|... .|.........  
T Consensus       154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--  218 (327)
T 3cv0_A          154 YRECRTLLHAALEMNPNDAQLHASLGVLYNL-------------SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN--  218 (327)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence            4567778888888899999999999988865             4789999999999999887653 44444433332  


Q ss_pred             cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---------
Q 005434          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---------  495 (697)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~---------  495 (697)
                                      .+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.         
T Consensus       219 ----------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~  281 (327)
T 3cv0_A          219 ----------------GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI-YMQVGGTTPTGEAS  281 (327)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTSCC-----C
T ss_pred             ----------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCccccccccch
Confidence                            3557899999999999999999999999999999999999999999999 67788         


Q ss_pred             ---cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          496 ---SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       496 ---~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                         +...|..........|.          .+.+..++++++...|
T Consensus       282 ~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          282 REATRSMWDFFRMLLNVMNR----------PDLVELTYAQNVEPFA  317 (327)
T ss_dssp             CTHHHHHHHHHHHHHHHTTC----------HHHHHHHTTCCSHHHH
T ss_pred             hhcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhcc
Confidence               78889888887777663          6777777777665443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.46  E-value=7e-12  Score=129.77  Aligned_cols=263  Identities=17%  Similarity=0.096  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+..+|++++...|++...|...+..+...| ...+...|++++...|.++..|...+.... ..|+.+.|...|+++
T Consensus        37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  115 (327)
T 3cv0_A           37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW  115 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            566788999999999999999999988888777 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      +...|....+|...........   ..  ..++..                       +                     
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~-----------------------~---------------------  146 (327)
T 3cv0_A          116 LLSQPQYEQLGSVNLQADVDID---DL--NVQSED-----------------------F---------------------  146 (327)
T ss_dssp             HHTSTTTTTC------------------------------------------------C---------------------
T ss_pred             HHhCCccHHHHHHHhHHHHHHH---HH--HHHHHh-----------------------H---------------------
Confidence            9999987766655532111000   00  000000                       0                     


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                         -....++.+.|..+|+++++..|.+...+..+...+...+   ..+.+...++.+++..|+++..|..++..+..  
T Consensus       147 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--  218 (327)
T 3cv0_A          147 ---FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN---NYDSAAANLRRAVELRPDDAQLWNKLGATLAN--  218 (327)
T ss_dssp             ---CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             ---HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence               0011235678999999999998988877777776665543   35788899999999999999999999998875  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 .++++.|...|+++++..|... .|.........                  .+..+.|...|++++..
T Consensus       219 -----------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          219 -----------GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN------------------MSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH
T ss_pred             -----------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHh
Confidence                       4789999999999999887643 44433333322                  35588999999999999


Q ss_pred             CCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          458 GCL------------TEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       458 ~~~------------~~~lw~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      .|.            .+..|...+..+...|++++|..++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          270 QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888            78999999999999999999999998877

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.32  E-value=1e-10  Score=125.06  Aligned_cols=263  Identities=11%  Similarity=0.075  Sum_probs=200.6

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhhCCCCHHH
Q 005434          151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN-VTAARALMQNGLRVCPTSEEL  228 (697)
Q Consensus       151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~-~~~aR~~~~r~l~~~p~~~~l  228 (697)
                      +...|++..+|..........+ +.++...|++++..+|+++.+|...+.... ..|+ ++.|...|++++..+|++..+
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            4566778888988888877777 678999999999999999999999999886 6785 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhh
Q 005434          229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG  308 (697)
Q Consensus       229 W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (697)
                      |.....+....           |                                                        .
T Consensus       169 ~~~~g~~~~~~-----------g--------------------------------------------------------~  181 (382)
T 2h6f_A          169 WHHRRVLVEWL-----------R--------------------------------------------------------D  181 (382)
T ss_dssp             HHHHHHHHHHH-----------T--------------------------------------------------------C
T ss_pred             HHHHHHHHHHc-----------c--------------------------------------------------------C
Confidence            98776543221           1                                                        1


Q ss_pred             hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (697)
Q Consensus       309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~  388 (697)
                      ++.|...|++|++..|++...|...-.++...+.   .+.+...++++++..|++...|..++..........       
T Consensus       182 ~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~-------  251 (382)
T 2h6f_A          182 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN-------  251 (382)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC-------
T ss_pred             HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc-------
Confidence            2357889999999999999888888777776653   356888899999999999999999988876411100       


Q ss_pred             cchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       389 ~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                      ....++.+...|++++...|+.. .|..........    +            ....+++...++++ ..+|.++..+..
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~----g------------~~~~~~a~~~~~~~-~~~p~~~~al~~  314 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR----G------------LSKYPNLLNQLLDL-QPSHSSPYLIAF  314 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT----C------------GGGCHHHHHHHHHH-TTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc----C------------ccchHHHHHHHHHh-ccCCCCHHHHHH
Confidence            01123445789999999988765 555433322210    0            12345677777776 778999988888


Q ss_pred             HHHHHHhcC---------CHHHHHHHHHHH-hhccCCCcHHHHHHHHHHHHH
Q 005434          468 YVTLYLQLG---------KLDEARKLAAKL-CSGKLSDSVQLWLLRISVEIR  509 (697)
Q Consensus       468 y~~l~~~~~---------~~~~A~~l~~~a-l~~~~P~~~~lW~~~i~l~~~  509 (697)
                      .+.++...|         .+++|.++++++ + ...|.....|.........
T Consensus       315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~-~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          315 LVDIYEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHH
Confidence            888888764         258999999999 8 7899999999887765543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.31  E-value=7.2e-12  Score=110.60  Aligned_cols=120  Identities=9%  Similarity=0.030  Sum_probs=76.2

Q ss_pred             cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 005434          492 KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISV  571 (697)
Q Consensus       492 ~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~  571 (697)
                      ..|++++.|..|+.++++.|...    +++-+++++++|++|+..+|+.+ ..-|..|+-                    
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~----~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~--------------------   62 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPL----SDALLNKLIGRYSQAIEALPPDK-YGQNESFAR--------------------   62 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSC----CHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHH--------------------
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCc----hhhHHHHHHHHHHHHHHcCCccc-cccHHHHHH--------------------
Confidence            35899999999999998776410    11235889999999999999875 556766652                    


Q ss_pred             hhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC
Q 005434          572 AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY  651 (697)
Q Consensus       572 ~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~  651 (697)
                                 ||..|+.|. ..+++++||++|+.|+..+..-..+|+.|+.||..++      ++.+||++..+|+..+
T Consensus        63 -----------LWIrYA~~~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg------nl~kARkILg~AiG~~  124 (161)
T 4h7y_A           63 -----------IQVRFAELK-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQG------NVKKSKQLLQKAVERG  124 (161)
T ss_dssp             -----------HHHHHHHHH-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTT
T ss_pred             -----------HHHHHHHHH-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc------cHHHHHHHHHHHhccC
Confidence                       233444442 2356666666666666543222456666666666666      6666666666666655


Q ss_pred             CCC
Q 005434          652 DQN  654 (697)
Q Consensus       652 ~~~  654 (697)
                      |..
T Consensus       125 ~k~  127 (161)
T 4h7y_A          125 AVP  127 (161)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.24  E-value=7.1e-10  Score=108.65  Aligned_cols=210  Identities=13%  Similarity=0.016  Sum_probs=146.1

Q ss_pred             CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      |.+...|..........| +..+...|++++...|+++..|...+.... ..|+.+.|...|++++...|++...|....
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            778888888888877777 578899999999999999999999998886 789999999999999999999888887766


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (697)
Q Consensus       234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (697)
                      .+......         ..                                                             
T Consensus        81 ~~~~~~~~---------~~-------------------------------------------------------------   90 (217)
T 2pl2_A           81 EAYVALYR---------QA-------------------------------------------------------------   90 (217)
T ss_dssp             HHHHHHHH---------TC-------------------------------------------------------------
T ss_pred             HHHHHhhh---------hh-------------------------------------------------------------
Confidence            54432100         00                                                             


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (697)
Q Consensus       314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~  393 (697)
                                +. ..        +.. +   ..+.+...++++++..|+++..|..++..+..             .+++
T Consensus        91 ----------~~-~~--------~~~-g---~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-------------~g~~  134 (217)
T 2pl2_A           91 ----------ED-RE--------RGK-G---YLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-------------LGER  134 (217)
T ss_dssp             ----------SS-HH--------HHH-H---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCH
T ss_pred             ----------hh-hc--------ccc-c---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------------cCCh
Confidence                      00 00        000 0   23456677778888888888888888888765             4789


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005434          394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL  473 (697)
Q Consensus       394 ~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~  473 (697)
                      +.|...|+++++.......|.........                  .+..+.|...|++++..+|.++.++...+.++.
T Consensus       135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~  196 (217)
T 2pl2_A          135 DKAEASLKQALALEDTPEIRSALAELYLS------------------MGRLDEALAQYAKALEQAPKDLDLRVRYASALL  196 (217)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999876333344444433332                  356789999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHh
Q 005434          474 QLGKLDEARKLAAKLC  489 (697)
Q Consensus       474 ~~~~~~~A~~l~~~al  489 (697)
                      ..|++++|...++++-
T Consensus       197 ~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          197 LKGKAEEAARAAALEH  212 (217)
T ss_dssp             C---------------
T ss_pred             HccCHHHHHHHHHHHh
Confidence            9999999998888754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.7e-09  Score=107.45  Aligned_cols=234  Identities=11%  Similarity=-0.028  Sum_probs=178.4

Q ss_pred             CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH-------HH
Q 005434          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE-------EL  228 (697)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~-------~l  228 (697)
                      ....|...+..+...| +..+...|++++... .++.+|...+.... ..|+++.|...|++++...|...       .+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            3456666677666666 578999999999999 88999999999886 79999999999999999988652       22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhh
Q 005434          229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG  308 (697)
Q Consensus       229 W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (697)
                      |.........                                                                   .++
T Consensus        82 ~~~l~~~~~~-------------------------------------------------------------------~~~   94 (258)
T 3uq3_A           82 FARIGNAYHK-------------------------------------------------------------------LGD   94 (258)
T ss_dssp             HHHHHHHHHH-------------------------------------------------------------------TTC
T ss_pred             HHHHHHHHHH-------------------------------------------------------------------ccc
Confidence            2222211110                                                                   113


Q ss_pred             hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (697)
Q Consensus       309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~  388 (697)
                      .+.|...|+++++..|.. ...       ...+   ..+.+...++.++...|.++..|..++..+..            
T Consensus        95 ~~~A~~~~~~a~~~~~~~-~~~-------~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  151 (258)
T 3uq3_A           95 LKKTIEYYQKSLTEHRTA-DIL-------TKLR---NAEKELKKAEAEAYVNPEKAEEARLEGKEYFT------------  151 (258)
T ss_dssp             HHHHHHHHHHHHHHCCCH-HHH-------HHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHhcCchh-HHH-------HHHh---HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH------------
Confidence            467888999999877663 221       1111   23567778888899999999999999998875            


Q ss_pred             cchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       389 ~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                       .++++.|...|+++++..|... .|.........                  .+..+.|...|++++..+|.++..|..
T Consensus       152 -~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          152 -KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------LMSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence             4789999999999999888754 44433333222                  355889999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccC------CCcHHHHHH
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLL  502 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~  502 (697)
                      .+..+...|++++|...+++++ ...      |++..+|..
T Consensus       213 l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~p~~~~~~~~  252 (258)
T 3uq3_A          213 KATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQL  252 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH-HhChhhcCCCchHHHHHH
Confidence            9999999999999999999999 666      777666654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.21  E-value=3.1e-10  Score=100.26  Aligned_cols=120  Identities=15%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             hCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCC--------
Q 005434           86 KRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGD--------  157 (697)
Q Consensus        86 ~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~--------  157 (697)
                      .-.|.+..+|+.|+.-+.+-                         .....| +...+++.+|+||+...|-+        
T Consensus         7 ~~~p~~yd~W~~yl~llE~~-------------------------g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrY   60 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKN-------------------------SVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESF   60 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHH-------------------------TCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHc-------------------------CCCchh-hHHHHHHHHHHHHHHcCCccccccHHHH
Confidence            34678999999999876321                         111234 67889999999999998763        


Q ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434          158 IELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (697)
Q Consensus       158 ~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y  232 (697)
                      +.+|..|+.|..-...++++.+|..|+..|..-+.+|++||+||+ .+||+.+||+++.+|+-.+|...++-...
T Consensus        61 I~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~le~a  134 (161)
T 4h7y_A           61 ARIQVRFAELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEMLEIA  134 (161)
T ss_dssp             HHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            468888888854433578999999999998889999999999998 89999999999999999999875544333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.19  E-value=6.4e-09  Score=111.03  Aligned_cols=246  Identities=9%  Similarity=0.072  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ..++...|++++...|++...|......+...|  ...+...|++++..+|+++.+|...+.... ..|+++.|...|++
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~k  191 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIAD  191 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence            457889999999999999999999999888776  468999999999999999999999999885 78999999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      +|...|++...|.....+....           |                                              
T Consensus       192 al~ldP~~~~a~~~lg~~~~~~-----------g----------------------------------------------  214 (382)
T 2h6f_A          192 ILNQDAKNYHAWQHRQWVIQEF-----------K----------------------------------------------  214 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHH-----------T----------------------------------------------
T ss_pred             HHHhCccCHHHHHHHHHHHHHc-----------C----------------------------------------------
Confidence            9999999999997655433221           1                                              


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHH---HHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDD---MHDKILSDMQRDFLVDPKYWDWLARLK  374 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~---~~~~il~~~~~~~p~~~~~w~~~a~~~  374 (697)
                                .++.|...|+++++..|++...|..+-.++..........   .....+++++...|++...|..++...
T Consensus       215 ----------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll  284 (382)
T 2h6f_A          215 ----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL  284 (382)
T ss_dssp             ----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence                      1235788999999999999888888877776522110111   124678899999999999999988876


Q ss_pred             cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (697)
Q Consensus       375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~  453 (697)
                      ....           ...++.|...++++ +..|... .+................+         ..+.++.|..+|++
T Consensus       285 ~~~g-----------~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~---------~~~~~~~A~~~~~~  343 (382)
T 2h6f_A          285 QDRG-----------LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN---------KEDILNKALELCEI  343 (382)
T ss_dssp             TTTC-----------GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS---------HHHHHHHHHHHHHH
T ss_pred             HccC-----------ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc---------hHHHHHHHHHHHHH
Confidence            5410           12567788888776 5555543 4444444433321000000         01246899999999


Q ss_pred             H-HHcCCCcHHHHHHHHHHHHh
Q 005434          454 A-EAMGCLTEDIAHRYVTLYLQ  474 (697)
Q Consensus       454 a-l~~~~~~~~lw~~y~~l~~~  474 (697)
                      + ++.+|.....|...+..+..
T Consensus       344 l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          344 LAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHH
Confidence            9 99999999999988776553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.18  E-value=3e-09  Score=104.16  Aligned_cols=198  Identities=14%  Similarity=0.034  Sum_probs=122.7

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      |.++..|...+..+...|++++|...+++++ ...|++...|..........|          +.+++...|+++++.-|
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL-KENPQDPEALYWLARTQLKLG----------LVNPALENGKTLVARTP   70 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCC
Confidence            4445566666666666666666666666666 566666666666555555544          25566666666666554


Q ss_pred             hhhhHHHHHHHHHHHHhh-----------h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHH
Q 005434          539 ALESESLWLMALKFFMNQ-----------K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYK  605 (697)
Q Consensus       539 ~~~~~~lW~~y~~~~~~~-----------~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~  605 (697)
                      ..  ...|......+...           +  +.+...|++++..-+.      ....+......+...|.+++|...|+
T Consensus        71 ~~--~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~  142 (217)
T 2pl2_A           71 RY--LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLK  142 (217)
T ss_dssp             TC--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Cc--HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            32  23333333322222           3  4566667777654211      22333333444567899999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005434          606 RFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRAR  682 (697)
Q Consensus       606 ~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral  682 (697)
                      +++... .+...+...+.+....|      +.+.|...|++++...|.++.+|......-...|+.+.|...|+++-
T Consensus       143 ~al~~~-~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          143 QALALE-DTPEIRSALAELYLSMG------RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHC-CCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHhcc-cchHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999988 77888888888877888      89999999999999999999999999999999999999999888764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.17  E-value=1.1e-09  Score=110.13  Aligned_cols=245  Identities=10%  Similarity=0.015  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH----HHHH
Q 005434          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL----WVEY  232 (697)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l----W~~y  232 (697)
                      .+.+..++..+...| +..+...|++++..+|.++..|...+.... ..|+.+.|...|++++. .|.++.+    |...
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            456677777777766 578999999999999999999999888875 78999999999999999 5544333    3333


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (697)
Q Consensus       233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (697)
                      ......                                                                   .++.+.|
T Consensus        81 g~~~~~-------------------------------------------------------------------~~~~~~A   93 (272)
T 3u4t_A           81 GKILMK-------------------------------------------------------------------KGQDSLA   93 (272)
T ss_dssp             HHHHHH-------------------------------------------------------------------TTCHHHH
T ss_pred             HHHHHH-------------------------------------------------------------------cccHHHH
Confidence            222111                                                                   0134678


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH-HhhcccCCCCCCCCcCccch
Q 005434          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVSKDGTSEDIVPS  391 (697)
Q Consensus       313 ~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a-~~~l~~~~~~~~~~~~~~~~  391 (697)
                      ...|+++++..|.+...+..+-.++...+   ..+.+...++++++..|.++..|..++ ..+..              +
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------~  156 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--------------K  156 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT--------------T
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--------------H
Confidence            89999999988888888777777665543   357788889999999999999999999 66643              4


Q ss_pred             HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC---CC-----cH
Q 005434          392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CL-----TE  462 (697)
Q Consensus       392 ~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~---~~-----~~  462 (697)
                      +++.|...|+++++..|+.. .|...........     +          ....+.|...|++++...   |.     ..
T Consensus       157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-----~----------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  221 (272)
T 3u4t_A          157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD-----P----------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI  221 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS-----T----------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-----c----------chhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence            79999999999999888753 2222222222111     0          011334667777777652   33     12


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005434          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (697)
Q Consensus       463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (697)
                      ..|...+.++...|++++|...+++++ ...|++...|....
T Consensus       222 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          222 EANEYIAYYYTINRDKVKADAAWKNIL-ALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCccHHHHHHHhh
Confidence            678888999999999999999999999 78999988886543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=6.3e-09  Score=103.31  Aligned_cols=212  Identities=11%  Similarity=-0.014  Sum_probs=170.1

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc-------HHHHHHHHHHHHHhcccC
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-------VQLWLLRISVEIRCVTRN  514 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~-------~~lW~~~i~l~~~~~~~~  514 (697)
                      +..+.|...|++++..+ .++..|...+..+...|++++|...+.+++ ...|.+       ...|..........+   
T Consensus        19 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~---   93 (258)
T 3uq3_A           19 RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISKSFARIGNAYHKLG---   93 (258)
T ss_dssp             TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred             ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHHHHHHHHHHHHHcc---
Confidence            56889999999999998 888999999999999999999999999999 555654       677777777776665   


Q ss_pred             CCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh
Q 005434          515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK  594 (697)
Q Consensus       515 ~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~  594 (697)
                             +.+.+.+.|++++...|..   .++..     ...-+.+...+++++...+.      ...++..........
T Consensus        94 -------~~~~A~~~~~~a~~~~~~~---~~~~~-----~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           94 -------DLKKTIEYYQKSLTEHRTA---DILTK-----LRNAEKELKKAEAEAYVNPE------KAEEARLEGKEYFTK  152 (258)
T ss_dssp             -------CHHHHHHHHHHHHHHCCCH---HHHHH-----HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHT
T ss_pred             -------cHHHHHHHHHHHHhcCchh---HHHHH-----HhHHHHHHHHHHHHHHcCcc------hHHHHHHHHHHHHHh
Confidence                   4788999999999876642   22111     11123455666766643211      122333344456678


Q ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhH
Q 005434          595 DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETA  674 (697)
Q Consensus       595 ~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a  674 (697)
                      |++++|...|++++...|.+...+...+.+....+      +.+.|...|++++...|.++..|...+..-...|+.+.|
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM------SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999888888888888888      899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 005434          675 TAVYWRARKTL  685 (697)
Q Consensus       675 ~~vy~ral~~~  685 (697)
                      ...|.++++..
T Consensus       227 ~~~~~~a~~~~  237 (258)
T 3uq3_A          227 LETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999999887

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.13  E-value=9.7e-09  Score=99.58  Aligned_cols=209  Identities=11%  Similarity=-0.017  Sum_probs=155.8

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      +|.++..|...+..+...|++++|...+++++ ...|++...|..........+          +.+.+.+.|++++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDAL-KSDPKNELAWLVRAEIYQYLK----------VNDKAQESFRQALSIK   72 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHhC
Confidence            45567778888888888888888888888888 677888888877777666555          3677778888888766


Q ss_pred             ChhhhHHHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434          538 SALESESLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG  614 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~-~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~  614 (697)
                      |..  ...|...+..+... +  +.+...|++++. .+..   +....++..........|++++|...|++++...|..
T Consensus        73 ~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A           73 PDS--AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTY---PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             TTC--HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC---SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCC--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            543  34555555544444 4  566677777764 1110   0011222333444567899999999999999998888


Q ss_pred             HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      ...+...+.+....+      +.+.|..+|++++...| .++..|.....+....|+.+.+..++..+.+..|++.
T Consensus       147 ~~~~~~la~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          147 PPAFKELARTKMLAG------QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             chHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            888888888887888      89999999999999999 8888888888899999999999999998887776653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.13  E-value=1.1e-08  Score=99.21  Aligned_cols=214  Identities=13%  Similarity=0.017  Sum_probs=141.7

Q ss_pred             hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHH
Q 005434          153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVE  231 (697)
Q Consensus       153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~  231 (697)
                      ..|++...|...+..+...| ...+...|++++..+|.++.+|...+.... ..|+.+.|...|++++...|.+..+|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence            35666777777777766666 467777888888888877777777777765 6778888888888888877776665544


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhH
Q 005434          232 YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV  311 (697)
Q Consensus       232 y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (697)
                      .+.+....                                                                  .++.+.
T Consensus        82 l~~~~~~~------------------------------------------------------------------~~~~~~   95 (225)
T 2vq2_A           82 YGWFLCGR------------------------------------------------------------------LNRPAE   95 (225)
T ss_dssp             HHHHHHTT------------------------------------------------------------------TCCHHH
T ss_pred             HHHHHHHh------------------------------------------------------------------cCcHHH
Confidence            43222100                                                                  002235


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (697)
Q Consensus       312 a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~  391 (697)
                      |...|+++++ .|                                  ..|.+...|..++..+..             .+
T Consensus        96 A~~~~~~~~~-~~----------------------------------~~~~~~~~~~~l~~~~~~-------------~~  127 (225)
T 2vq2_A           96 SMAYFDKALA-DP----------------------------------TYPTPYIANLNKGICSAK-------------QG  127 (225)
T ss_dssp             HHHHHHHHHT-ST----------------------------------TCSCHHHHHHHHHHHHHH-------------TT
T ss_pred             HHHHHHHHHc-Cc----------------------------------CCcchHHHHHHHHHHHHH-------------cC
Confidence            5666666555 11                                  223334555566665543             36


Q ss_pred             HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCC-CcHHHHHHHH
Q 005434          392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTEDIAHRYV  469 (697)
Q Consensus       392 ~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~-~~~~lw~~y~  469 (697)
                      +++.|...|+++++..|... .|.........                  .+..+.|...|++++..+| .++..|...+
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  189 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKML------------------AGQLGDADYYFKKYQSRVEVLQADDLLLGW  189 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            67888888888888776543 33333333222                  3457788888888888888 8888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (697)
                      .++...|+.+.|...++.+. ...|++...+
T Consensus       190 ~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~  219 (225)
T 2vq2_A          190 KIAKALGNAQAAYEYEAQLQ-ANFPYSEELQ  219 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHH-HhCCCCHHHH
Confidence            88888899998888888877 6778876654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.12  E-value=5.5e-09  Score=103.88  Aligned_cols=215  Identities=11%  Similarity=0.019  Sum_probs=157.7

Q ss_pred             HhcCCC-HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434          152 MRFKGD-IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (697)
Q Consensus       152 ~~~p~~-~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW  229 (697)
                      ...|.+ ...|...+......| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|.+..+|
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~  108 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVL  108 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence            445665 788888888877777 578999999999999999999999999886 78999999999999999999887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhh
Q 005434          230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL  309 (697)
Q Consensus       230 ~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (697)
                      ..++.+....                                                                   ++.
T Consensus       109 ~~la~~~~~~-------------------------------------------------------------------g~~  121 (252)
T 2ho1_A          109 NNYGGFLYEQ-------------------------------------------------------------------KRY  121 (252)
T ss_dssp             HHHHHHHHHT-------------------------------------------------------------------TCH
T ss_pred             HHHHHHHHHH-------------------------------------------------------------------hHH
Confidence            6655433210                                                                   123


Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434          310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (697)
Q Consensus       310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~  389 (697)
                      +.|...|+++++ .+                                  ..|.++..|..++..+..             
T Consensus       122 ~~A~~~~~~~~~-~~----------------------------------~~~~~~~~~~~la~~~~~-------------  153 (252)
T 2ho1_A          122 EEAYQRLLEASQ-DT----------------------------------LYPERSRVFENLGLVSLQ-------------  153 (252)
T ss_dssp             HHHHHHHHHHTT-CT----------------------------------TCTTHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHh-Cc----------------------------------cCcccHHHHHHHHHHHHH-------------
Confidence            456777777665 11                                  123334445555555543             


Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      .++++.|...|+++++..|... .|.........                  .+..+.|...|++++..+|.+...|...
T Consensus       154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~  215 (252)
T 2ho1_A          154 MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK------------------EREYVPARQYYDLFAQGGGQNARSLLLG  215 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            3668888888888888776543 44333333322                  2457888889999988888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (697)
                      +.++...|++++|...+++++ ...|++...+.
T Consensus       216 ~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~  247 (252)
T 2ho1_A          216 IRLAKVFEDRDTAASYGLQLK-RLYPGSLEYQE  247 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-HHCTTSHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHH-HHCCCCHHHHH
Confidence            899999999999999999998 78888776653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.12  E-value=2.6e-09  Score=105.26  Aligned_cols=188  Identities=12%  Similarity=-0.040  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..+.|...|++++..+|.+...|...+..+...|++++|...+++++ ...|.+...|.....+....+          
T Consensus        37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~----------  105 (243)
T 2q7f_A           37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL-ELDSSAATAYYGAGNVYVVKE----------  105 (243)
T ss_dssp             -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------
T ss_pred             hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHhc----------
Confidence            557788889999999999999999999999999999999999999999 788999999988888777665          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR  601 (697)
                      +.+.+.+.|++++...|..  ..+|...+..+.                                      ..|++++|.
T Consensus       106 ~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~--------------------------------------~~~~~~~A~  145 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGMEN--GDLFYMLGTVLV--------------------------------------KLEQPKLAL  145 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHH--------------------------------------HTSCHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------------------------------------HhccHHHHH
Confidence            4788888899998876543  344443333222                                      234444455


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 005434          602 EMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRA  681 (697)
Q Consensus       602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ra  681 (697)
                      ..|++++...|.....+...+.+....+      +.+.|...|++++...+.++.+|...+......|+.+.|...+.++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          146 PYLQRAVELNENDTEARFQFGMCLANEG------MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHT------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5555555444444444444444444444      4445555555555544444444544444444455555555555555


Q ss_pred             HhhcC
Q 005434          682 RKTLK  686 (697)
Q Consensus       682 l~~~~  686 (697)
                      ++..+
T Consensus       220 ~~~~p  224 (243)
T 2q7f_A          220 IDIQP  224 (243)
T ss_dssp             HHHCT
T ss_pred             HccCc
Confidence            44443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.11  E-value=1.6e-08  Score=101.62  Aligned_cols=232  Identities=13%  Similarity=0.078  Sum_probs=153.8

Q ss_pred             cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhH----HHHHHHHH
Q 005434          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI----FDLYTKFL  420 (697)
Q Consensus       345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~l----w~~yi~~~  420 (697)
                      ..+.+..+++++++..|+++..|..++..+..             .++++.|...|+++++..++...    |.......
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-------------LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            35678888899999999999999999998765             47899999999999993322222    32222222


Q ss_pred             HHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434          421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (697)
                      ..                  .+..+.|...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+...|
T Consensus        85 ~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~  145 (272)
T 3u4t_A           85 MK------------------KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTTTDPKVF  145 (272)
T ss_dssp             HH------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSCCCHHHH
T ss_pred             HH------------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCCCcHHHH
Confidence            21                  3558899999999999999999999999999999999999999999999 7899999998


Q ss_pred             HHHH-HHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhhhCCC
Q 005434          501 LLRI-SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQ---KHYFDKLVEIALISVAKDGG  576 (697)
Q Consensus       501 ~~~i-~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~---~~~~~~l~~~a~~~~~~~~~  576 (697)
                      .... .+... +          +.+++.+.|+++++..|......++...+......   .+.+...|++++........
T Consensus       146 ~~l~~~~~~~-~----------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  214 (272)
T 3u4t_A          146 YELGQAYYYN-K----------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA  214 (272)
T ss_dssp             HHHHHHHHHT-T----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHH-H----------HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence            8776 44432 2          47889999999998777542222222222111111   12245556666655422210


Q ss_pred             CCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 005434          577 GESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPGLVLYQN  620 (697)
Q Consensus       577 ~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~  620 (697)
                      . ....+...   ........|++++|...|++++...|.+...+..
T Consensus       215 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~  260 (272)
T 3u4t_A          215 K-YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG  260 (272)
T ss_dssp             G-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             c-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence            0 00001111   1222344566666666666666666665554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.09  E-value=8.8e-09  Score=102.35  Aligned_cols=209  Identities=16%  Similarity=-0.015  Sum_probs=154.9

Q ss_pred             CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434          458 GCLT-EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       458 ~~~~-~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      +|.. +..|...+..+...|++++|...+++++ ...|.+...|.....+....+          +.+.+.+.|++++..
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL-EIDPSSADAHAALAVVFQTEM----------EPKLADEEYRKALAS  100 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHH
Confidence            3443 6678888888888888888888888888 677888888877777666655          367788888888876


Q ss_pred             cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434          537 VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG  614 (697)
Q Consensus       537 ~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~  614 (697)
                      .|..  ..+|...+..+...+  +.+...|++++. . +.  .+....++..........|++++|...|++++...|..
T Consensus       101 ~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          101 DSRN--ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D-TL--YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C-TT--CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CcCc--HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C-cc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence            6532  345555444444333  556667777654 0 00  00112222233444567899999999999999998888


Q ss_pred             HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      ...+...+.+....+      +.+.|..+|++++...+.++..|...+......|+.+.|..+++++++..++..
T Consensus       175 ~~~~~~la~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          175 PSVALEMADLLYKER------EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            888888888888888      899999999999998888888899999999999999999999999998887654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.07  E-value=8.4e-09  Score=105.98  Aligned_cols=189  Identities=7%  Similarity=-0.001  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434          442 HYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~--~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      +..+.+...|++.+..  +|.++.+|...+..+...|++++|...+++      |++...|...+.+....|        
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g--------  144 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLD--------  144 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTT--------
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCC--------
Confidence            4478899999998876  588999999999999999999999988865      788899998888888776        


Q ss_pred             ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCH
Q 005434          520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (697)
Q Consensus       520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~  597 (697)
                        +.+.+.+.|++++..-|......+-..|+.+....+  +.+..+|++++...+.      ...++..........|.+
T Consensus       145 --~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          145 --RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             --CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHHHTTCH
T ss_pred             --CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCH
Confidence              378888999999876653211222222333322222  3455666666654211      222333333344556677


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434          598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL  657 (697)
Q Consensus       598 ~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l  657 (697)
                      ++|...|++++...|.+...+...+.+....|.     ..+.+..++++++...|.++.+
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-----~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-----PPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCCChHH
Confidence            777777777777666666666665655555551     2234566667777666666544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.07  E-value=2.4e-08  Score=100.25  Aligned_cols=226  Identities=13%  Similarity=-0.074  Sum_probs=164.6

Q ss_pred             chHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                      .++++.|...|+++++..+..  .....+...-....               ..+..+.|...|++++..+|.++..|..
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~A~~~~~~al~~~~~~~~~~~~   82 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYD---------------SLGLRALARNDFSQALAIRPDMPEVFNY   82 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH---------------HcccHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            588999999999999875321  12222222211111               1356889999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (697)
Q Consensus       468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~  547 (697)
                      .+..+...|++++|...+++++ ...|.+...|.....+....+          +.+++.+.|++++...|......+|.
T Consensus        83 la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYYGG----------RDKLAQDDLLAFYQDDPNDPFRSLWL  151 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999 789999999998888887766          47899999999998777543333343


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC----HHHHHHHHH
Q 005434          548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG----LVLYQNCIE  623 (697)
Q Consensus       548 ~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~----~~~~~~~i~  623 (697)
                      ... +.....+.+...+++++...+..      ... ...+......++.+.|...|++++...|..    ...+...+.
T Consensus       152 ~~~-~~~~~~~~A~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  223 (275)
T 1xnf_A          152 YLA-EQKLDEKQAKEVLKQHFEKSDKE------QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK  223 (275)
T ss_dssp             HHH-HHHHCHHHHHHHHHHHHHHSCCC------STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHhcCHHHHHHHHHHHHhcCCcc------hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence            322 12222256777787777653321      122 223444556778899999999999876532    456777777


Q ss_pred             HHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434          624 LENNLASVGDKDSLVNARKLFESALATYDQNT  655 (697)
Q Consensus       624 lE~~~~~~~~~~~~~raR~lye~al~~~~~~~  655 (697)
                      +....+      +.+.|...|++++...|.+.
T Consensus       224 ~~~~~g------~~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          224 YYLSLG------DLDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             HHHHTT------CHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHcC------CHHHHHHHHHHHHhCCchhH
Confidence            777777      89999999999999887553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.06  E-value=9.7e-09  Score=101.13  Aligned_cols=170  Identities=11%  Similarity=0.043  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~  541 (697)
                      +..|...+..+...|++++|...+++++ ...|.+...|..........+          +.+.+.+.|++++...|.. 
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~~~~~~~~-   90 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAI-EENKEDAIPYINFANLLSSVN----------ELERALAFYDKALELDSSA-   90 (243)
T ss_dssp             -------------------CCTTHHHHH-TTCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCcc-
Confidence            4567777788888999999999999999 788999999988887777665          3788888899988765532 


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005434          542 SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC  621 (697)
Q Consensus       542 ~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~  621 (697)
                       ..+|...                                      .......|++++|...|++++...|.....+...
T Consensus        91 -~~~~~~l--------------------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           91 -ATAYYGA--------------------------------------GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             -HHHHHHH--------------------------------------HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             -hHHHHHH--------------------------------------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence             2222211                                      1112346889999999999999999888888888


Q ss_pred             HHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          622 IELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      +.+....+      +.+.|..+|++++...+.++.+|...+......|+.+.|..++.++++..++.
T Consensus       132 a~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (243)
T 2q7f_A          132 GTVLVKLE------QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH  192 (243)
T ss_dssp             HHHHHHTS------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhc------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            88888888      89999999999999999889999999999999999999999999999887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.00  E-value=3.2e-08  Score=93.36  Aligned_cols=171  Identities=7%  Similarity=-0.035  Sum_probs=140.9

Q ss_pred             CCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434          156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (697)
Q Consensus       156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~  234 (697)
                      .+..+|..........| +..+...|++++..+|+++..|...+.... ..|+.+.|...+.+++...|.....|.....
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            46788888888887777 578999999999999999999999999886 7999999999999999999998888776654


Q ss_pred             HHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHH
Q 005434          235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQT  314 (697)
Q Consensus       235 ~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (697)
                      +....                                                                   .+.+.+..
T Consensus        82 ~~~~~-------------------------------------------------------------------~~~~~a~~   94 (184)
T 3vtx_A           82 ANFMI-------------------------------------------------------------------DEKQAAID   94 (184)
T ss_dssp             HHHHT-------------------------------------------------------------------TCHHHHHH
T ss_pred             HHHHc-------------------------------------------------------------------CCHHHHHH
Confidence            43221                                                                   12346778


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHH
Q 005434          315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ  394 (697)
Q Consensus       315 iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~  394 (697)
                      .+.++++..|.+...+..+-.++...+   ..+.+...++++++..|+++..|..+|..+..             .++++
T Consensus        95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-------------~g~~~  158 (184)
T 3vtx_A           95 ALQRAIALNTVYADAYYKLGLVYDSMG---EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-------------KGLRD  158 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHhC---CchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-------------CCCHH
Confidence            888899888888877777666665443   35788899999999999999999999999875             58899


Q ss_pred             HHHHHHHHHhhcCCch
Q 005434          395 KAIQVYEEALKNVPSS  410 (697)
Q Consensus       395 ~a~~vye~al~~~~~~  410 (697)
                      +|...|++|++..|..
T Consensus       159 ~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHhCCccC
Confidence            9999999999877753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.98  E-value=3.5e-08  Score=93.07  Aligned_cols=171  Identities=13%  Similarity=0.006  Sum_probs=123.9

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434          460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA  539 (697)
Q Consensus       460 ~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~  539 (697)
                      .++.+|...+..+...|++++|.+.+++++ ...|++...|.....+....+          +.+.+.+.+.+++...|.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~----------~~~~a~~~~~~~~~~~~~   71 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL-KADPNNVETLLKLGKTYMDIG----------LPNDAIESLKKFVVLDTT   71 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCCC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCch
Confidence            357899999999999999999999999999 789999999998888777766          367787888888776653


Q ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHH
Q 005434          540 LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ  619 (697)
Q Consensus       540 ~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~  619 (697)
                      .  ...|.....                                      .....++++.|...+.+++...|.....+.
T Consensus        72 ~--~~~~~~~~~--------------------------------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  111 (184)
T 3vtx_A           72 S--AEAYYILGS--------------------------------------ANFMIDEKQAAIDALQRAIALNTVYADAYY  111 (184)
T ss_dssp             C--HHHHHHHHH--------------------------------------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             h--HHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            3  233322221                                      122345666777777777777777766666


Q ss_pred             HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       620 ~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      ..+.+...++      +.+.|...|+++++..|.++..|......-...|+.+.|...|++|++.-|+
T Consensus       112 ~lg~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          112 KLGLVYDSMG------EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHhC------CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            6666666666      6777777777777777777777777777777777777777777777765443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.96  E-value=3.2e-08  Score=109.09  Aligned_cols=212  Identities=14%  Similarity=-0.065  Sum_probs=169.9

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL-DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~-~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      +.++.+...++.+....|.....|...+..+...|++ ++|...+++++ ...|++...|..........+         
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g---------  151 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV-KLEPELVEAWNQLGEVYWKKG---------  151 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC---------
Confidence            4466777888888888888999999999999999999 99999999999 789999999998888887776         


Q ss_pred             cchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh---------h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH
Q 005434          521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQ---------K--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN  589 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~---------~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~  589 (697)
                       +.+++.+.|++++...|.   ...|......+...         +  +.+...|++++...+.      ....+..+..
T Consensus       152 -~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~  221 (474)
T 4abn_A          152 -DVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRSWYILGN  221 (474)
T ss_dssp             -CHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence             478899999999987765   25565555555444         3  4677788888865321      2333333333


Q ss_pred             HHHHh--------CCHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHH
Q 005434          590 LVIQK--------DGIQQAREMYKRFLALPR---PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLW  658 (697)
Q Consensus       590 ~~~~~--------~~~~~AR~iy~~~i~~~p---~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW  658 (697)
                      .+...        |++++|...|++++...|   .....|...+.+....+      +.+.|...|++++...|.++..|
T Consensus       222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~l~p~~~~a~  295 (474)
T 4abn_A          222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE------SYGEALEGFSQAAALDPAWPEPQ  295 (474)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHH
Confidence            34455        789999999999999988   78888988888888888      89999999999999999999999


Q ss_pred             HHHHHHHHhcCChhhHHHHHH
Q 005434          659 RDYYSTETKLGTSETATAVYW  679 (697)
Q Consensus       659 ~~y~~fE~~~G~~~~a~~vy~  679 (697)
                      ..........|+.+.|...+.
T Consensus       296 ~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          296 QREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999998888888877776543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.95  E-value=5.3e-08  Score=97.75  Aligned_cols=221  Identities=13%  Similarity=-0.025  Sum_probs=170.0

Q ss_pred             HhHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCC
Q 005434          441 EHYISHLLTVYEKAEAMG----CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF  516 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~----~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~  516 (697)
                      .+..+.|...|++++...    |.++..|...+..+...|++++|...+++++ ...|++...|.....+....+     
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~-----   91 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRPDMPEVFNYLGIYLTQAG-----   91 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHTT-----
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHcc-----
Confidence            477899999999999874    3456789999999999999999999999999 789999999998888877766     


Q ss_pred             CCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh
Q 005434          517 SPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK  594 (697)
Q Consensus       517 ~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~  594 (697)
                           +.+.+.+.|++++...|..  ...|...+..+...+  +.+...|++++...+.       ......++......
T Consensus        92 -----~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~~~  157 (275)
T 1xnf_A           92 -----NFDAAYEAFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-------DPFRSLWLYLAEQK  157 (275)
T ss_dssp             -----CHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHhcCccc--cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHh
Confidence                 4789999999999877643  355655555444444  5788888988864321       11223334444567


Q ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC----CchHHHHHHHHHHhcCC
Q 005434          595 DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ----NTSLWRDYYSTETKLGT  670 (697)
Q Consensus       595 ~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~----~~~lW~~y~~fE~~~G~  670 (697)
                      |++++|...|++++...|+....+. .+.+....+      +.+.+...|++++...+.    ++.+|...+......|+
T Consensus       158 ~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  230 (275)
T 1xnf_A          158 LDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNI------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD  230 (275)
T ss_dssp             HCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSS------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhc------CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence            9999999999999998877755544 333333444      668899999999876652    25889999999999999


Q ss_pred             hhhHHHHHHHHHhhcCCc
Q 005434          671 SETATAVYWRARKTLKDS  688 (697)
Q Consensus       671 ~~~a~~vy~ral~~~~~~  688 (697)
                      .+.|...|++++..-|+.
T Consensus       231 ~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          231 LDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHhCCchh
Confidence            999999999999877643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.92  E-value=7.4e-08  Score=98.83  Aligned_cols=183  Identities=5%  Similarity=-0.040  Sum_probs=142.2

Q ss_pred             hhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCc
Q 005434          309 LRVLQTIYSGAVEA--LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (697)
Q Consensus       309 ~~~a~~iy~~al~~--~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~  386 (697)
                      .+.|...|+..+..  .|++...+..+-.++..-+   ..+.+...+++     |.++..+..++..+..          
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g---~~~~Al~~l~~-----~~~~~~~~~l~~~~~~----------  142 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ---NPDAALRTLHQ-----GDSLECMAMTVQILLK----------  142 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT---CHHHHHHHHTT-----CCSHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC---CHHHHHHHHhC-----CCCHHHHHHHHHHHHH----------
Confidence            46788889988865  4887776655555554332   34556666655     8889999999998875          


Q ss_pred             CccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434          387 DIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (697)
Q Consensus       387 ~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~  463 (697)
                         .|+.+.|...|+++++..|...   +...|+.+...                  .+..+.|..+|++++..+|.++.
T Consensus       143 ---~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~------------------~~~~~eA~~~~~~~l~~~p~~~~  201 (291)
T 3mkr_A          143 ---LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG------------------GEKLQDAYYIFQEMADKCSPTLL  201 (291)
T ss_dssp             ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC------------------TTHHHHHHHHHHHHHHHSCCCHH
T ss_pred             ---CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC------------------chHHHHHHHHHHHHHHhCCCcHH
Confidence               4889999999999999877653   22233333221                  25688999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      +|...+..+...|++++|...+++++ ...|++.+.|...+.+....|.         ..+.+.+.+++++..-|..
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~al-~~~p~~~~~l~~l~~~~~~~g~---------~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEAL-DKDSGHPETLINLVVLSQHLGK---------PPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999 7899999999999888877764         2355777899998777643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.92  E-value=3.6e-08  Score=101.44  Aligned_cols=273  Identities=14%  Similarity=0.031  Sum_probs=171.7

Q ss_pred             chHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc------CCCc
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMI--FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM------GCLT  461 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~l--w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~------~~~~  461 (697)
                      .++++.|...|+++++..|....  ...|...-.-..               ..+..+.+...|++++..      .+..
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF---------------YLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            47899999999999998776531  122222211111               124577888888887765      2334


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---Cc---HHHHHHHHHHHHHhcccCC--CC------CC--ccchHH
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS---DS---VQLWLLRISVEIRCVTRNS--FS------PS--KADILS  525 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P---~~---~~lW~~~i~l~~~~~~~~~--~~------~~--~~~~~~  525 (697)
                      ..+|...+..+...|++++|...+.+++ ...|   +.   ...+.....+....+....  ..      +.  ....+.
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence            5678888999999999999999999988 4333   21   2344444444443332000  00      00  001566


Q ss_pred             HHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC---hHHHHHHHHHHhCC
Q 005434          526 IFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS---LPSAIINLVIQKDG  596 (697)
Q Consensus       526 ~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~---l~~~yl~~~~~~~~  596 (697)
                      +.+.|++++...+...    ...++......+...+  +.+...+++++........   ...   ............|+
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCC
Confidence            7777777766432111    1223333333333333  5677788888876544221   111   12223334567899


Q ss_pred             HHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CC----chHHHHHHHH
Q 005434          597 IQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QN----TSLWRDYYST  664 (697)
Q Consensus       597 ~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~----~~lW~~y~~f  664 (697)
                      +++|...|++++...+..      ...+...+.+....+      +.+.|...|++++...+  .+    ..+|......
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  312 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA  312 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            999999999999864432      345666667777777      89999999999998866  22    3578888888


Q ss_pred             HHhcCChhhHHHHHHHHHhhcCC
Q 005434          665 ETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       665 E~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      ....|+.+.|...+.+|+...+.
T Consensus       313 ~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          313 YTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHcCChHHHHHHHHHHHHHHHh
Confidence            88999999999999999987653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.91  E-value=7e-08  Score=106.35  Aligned_cols=226  Identities=12%  Similarity=0.066  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ..++...++.+....|.+...|..........+ + ..+...|++++..+|.++..|...+...+ ..|+++.|...|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            556777888888889999999999998887766 7 78999999999999999999999999886 78999999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      ++...|+ ...|.....+...             ...                          .             .  
T Consensus       163 al~~~p~-~~~~~~lg~~~~~-------------~~~--------------------------~-------------~--  187 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQ-------------LQT--------------------------D-------------S--  187 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTT-------------CCC--------------------------S-------------C--
T ss_pred             HHhhCCC-HHHHHHHHHHHHH-------------hcc--------------------------C-------------C--
Confidence            9999998 4555444322110             000                          0             0  


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~  377 (697)
                          .....+.++.|...|+                                     ++++..|+++..|..++..+...
T Consensus       188 ----~~~~~g~~~~A~~~~~-------------------------------------~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          188 ----GDEHSRHVMDSVRQAK-------------------------------------LAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             ----HHHHHHHHHHHHHHHH-------------------------------------HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ----hhhhhhhHHHHHHHHH-------------------------------------HHHHhCCCCHHHHHHHHHHHHHH
Confidence                0001123344444444                                     44445555555565555555320


Q ss_pred             CCCCCCCCcCccchHHHHHHHHHHHHhhcCC---chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (697)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~---~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~  453 (697)
                      .....     ...++++.|...|+++++..|   ... .|.........                  .+..+.|...|++
T Consensus       227 ~~~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~  283 (474)
T 4abn_A          227 YFNTG-----QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY------------------EESYGEALEGFSQ  283 (474)
T ss_dssp             HHHTT-----CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred             HHhhc-----cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH------------------cCCHHHHHHHHHH
Confidence            00000     002678888888888888766   322 44433333322                  2457788888888


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLA  485 (697)
Q Consensus       454 al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~  485 (697)
                      |+..+|.++..|...+.++...|++++|...+
T Consensus       284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888888888888888777776544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.90  E-value=6.9e-08  Score=103.40  Aligned_cols=272  Identities=12%  Similarity=-0.013  Sum_probs=177.7

Q ss_pred             chHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc------CCCc
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMI--FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM------GCLT  461 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~l--w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~------~~~~  461 (697)
                      .++++.|...|+++++..|....  ...|...-.-..               ..+..+.+...|++++..      .+..
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~---------------~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF---------------YLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            47899999999999998776531  112221111111               135578888888888875      3445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhccc----CCCCCC---ccchHHHHH
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGK------LSDSVQLWLLRISVEIRCVTR----NSFSPS---KADILSIFE  528 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~------~P~~~~lW~~~i~l~~~~~~~----~~~~~~---~~~~~~~~~  528 (697)
                      ...|...+..+...|++++|...+++++ ..      .|.....|.....+....+..    ......   ....+.+.+
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6788899999999999999999999998 43      233345555555555444310    000000   001567777


Q ss_pred             HHHHHHhhcChh----hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC---hHHHHHHHHHHhCCHHH
Q 005434          529 LLKCILTKVSAL----ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS---LPSAIINLVIQKDGIQQ  599 (697)
Q Consensus       529 ~f~~al~~~p~~----~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~---l~~~yl~~~~~~~~~~~  599 (697)
                      .|++++...+..    .....|......+...+  +.+...|++++........   ...   ........+...|++++
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~  281 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---RAAERRANSNLGNSHIFLGQFED  281 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHCcCHHH
Confidence            788877643211    12234443343333333  5677888888876544211   111   12223334567899999


Q ss_pred             HHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--C----chHHHHHHHHHHh
Q 005434          600 AREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--N----TSLWRDYYSTETK  667 (697)
Q Consensus       600 AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~----~~lW~~y~~fE~~  667 (697)
                      |...|++++...+..      ...+...+.+....+      +.+.|...|++++...+.  +    ...+......-..
T Consensus       282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  355 (411)
T 4a1s_A          282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH------EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA  355 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence            999999999865532      345666777777777      899999999999998662  2    2578888888889


Q ss_pred             cCChhhHHHHHHHHHhhcC
Q 005434          668 LGTSETATAVYWRARKTLK  686 (697)
Q Consensus       668 ~G~~~~a~~vy~ral~~~~  686 (697)
                      .|+.+.|...|.+|++..+
T Consensus       356 ~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          356 IGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCC
T ss_pred             hccHHHHHHHHHHHHHHHh
Confidence            9999999999999998874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.86  E-value=1.5e-07  Score=100.09  Aligned_cols=285  Identities=13%  Similarity=-0.007  Sum_probs=182.2

Q ss_pred             hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhH
Q 005434          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVE  441 (697)
Q Consensus       364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~  441 (697)
                      ...|...+.....             .++++.|...|+++++..|...  +...|...-....               ..
T Consensus         9 ~~~l~~~g~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~---------------~~   60 (406)
T 3sf4_A            9 CLELALEGERLCK-------------SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF---------------YL   60 (406)
T ss_dssp             HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---------------HT
T ss_pred             HHHHHHHHHHHHH-------------hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH---------------Hh
Confidence            4445666666654             4789999999999999877653  1122222211111               13


Q ss_pred             hHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAM------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR  509 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~------~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~  509 (697)
                      +..+.+...|++|+..      .+.....|...+..+...|++++|...+.+++ ...|..      ...|.....+...
T Consensus        61 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELNDKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhcccccchHHHHHHHHHHHHH
Confidence            4577888888888765      22335678888999999999999999999998 444432      3355444444444


Q ss_pred             hccc-----CCCCCC-----ccchHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhh
Q 005434          510 CVTR-----NSFSPS-----KADILSIFELLKCILTKVSAL----ESESLWLMALKFFMNQK--HYFDKLVEIALISVAK  573 (697)
Q Consensus       510 ~~~~-----~~~~~~-----~~~~~~~~~~f~~al~~~p~~----~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~  573 (697)
                      .+..     ......     ....+.+.+.|.+++...+..    .....|......+...+  +.+...|++++...+.
T Consensus       140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            3320     000000     001566777777777643211    12233443333333333  5677888888876654


Q ss_pred             CCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434          574 DGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLF  644 (697)
Q Consensus       574 ~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~ly  644 (697)
                      ...   .......   ........|++++|...|++++...|..      ...+...+.+....+      +.+.|...|
T Consensus       220 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~  290 (406)
T 3sf4_A          220 FGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ------DYEKAIDYH  290 (406)
T ss_dssp             TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred             cCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC------cHHHHHHHH
Confidence            321   1111222   2333567899999999999999765433      345666677777777      899999999


Q ss_pred             HHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          645 ESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       645 e~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ++++...+..      ..+|......-...|+.+.|...+++|++..+
T Consensus       291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999986622      35788888888889999999999999988753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.79  E-value=2e-06  Score=84.05  Aligned_cols=80  Identities=4%  Similarity=-0.118  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHP-KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (697)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p-~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y  232 (697)
                      |.+...|..........| +.++...|++++...| .++..|...+.... ..|+++.|...|++++...|....+|...
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            445677777777666666 5678888888888888 77888877777775 78888888888888888888866666655


Q ss_pred             HHH
Q 005434          233 LRM  235 (697)
Q Consensus       233 ~~~  235 (697)
                      ...
T Consensus        83 ~~~   85 (228)
T 4i17_A           83 SAA   85 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.77  E-value=0.00013  Score=80.24  Aligned_cols=412  Identities=8%  Similarity=-0.103  Sum_probs=245.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHH----hc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 005434          146 IYRLAVMRFKGDIELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQ  216 (697)
Q Consensus       146 iyeral~~~p~~~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~----~~~~~~aR~~~~  216 (697)
                      .++++.  .+++.+.......+...    .+ ..++...|++++..  .++..+...+.+.. .    .++.+.|...|+
T Consensus        29 ~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           29 QLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHH
T ss_pred             HHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            344443  36788888777776655    23 35788999999875  56888888888775 5    789999999999


Q ss_pred             HhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchh
Q 005434          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (697)
Q Consensus       217 r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (697)
                      ++....  +...+.....+...            |...                                          
T Consensus       104 ~a~~~~--~~~a~~~Lg~~y~~------------g~g~------------------------------------------  127 (490)
T 2xm6_A          104 KAALKG--LPQAQQNLGVMYHE------------GNGV------------------------------------------  127 (490)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHH------------TSSS------------------------------------------
T ss_pred             HHHHCC--CHHHHHHHHHHHHc------------CCCC------------------------------------------
Confidence            998753  44444433322111            1100                                          


Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-cccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhc
Q 005434          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM  375 (697)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l  375 (697)
                               .++.+.|...|++|.+.  .+......+-.++..- +.......+...++++.+.  .++..+..++..+.
T Consensus       128 ---------~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  194 (490)
T 2xm6_A          128 ---------KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS  194 (490)
T ss_dssp             ---------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             ---------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence                     01345778888888774  3344444444444321 1122456777778877765  56888888888886


Q ss_pred             ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (697)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al  455 (697)
                      ....         +.++.++|...|+++++.-+... +.....+... ..  .           ..++.+++...|++++
T Consensus       195 ~g~g---------~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~~y~~-g~--g-----------~~~~~~~A~~~~~~a~  250 (490)
T 2xm6_A          195 RGLG---------VERNDAISAQWYRKSATSGDELG-QLHLADMYYF-GI--G-----------VTQDYTQSRVLFSQSA  250 (490)
T ss_dssp             HTSS---------SCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHH-TS--S-----------SCCCHHHHHHHHHHHH
T ss_pred             cCCC---------CCcCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHc-CC--C-----------CCCCHHHHHHHHHHHH
Confidence            5311         24678999999999987643221 1111111111 00  0           1245789999999998


Q ss_pred             HcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434          456 AMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (697)
Q Consensus       456 ~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~  531 (697)
                      ..  .++..+...+.++..    .+++++|...+++++ ..  .+...+.....+......   +++  .+.+++...|+
T Consensus       251 ~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~---g~~--~~~~~A~~~~~  320 (490)
T 2xm6_A          251 EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAE---GVA--KNREQAISWYT  320 (490)
T ss_dssp             TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBT---TBC--CCHHHHHHHHH
T ss_pred             HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCC---CCc--CCHHHHHHHHH
Confidence            76  346677777777777    789999999999998 33  344555444444433200   001  15788999999


Q ss_pred             HHHhhcChhhhHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH----hCCHHHHHH
Q 005434          532 CILTKVSALESESLWLMALKFFMN-----QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----KDGIQQARE  602 (697)
Q Consensus       532 ~al~~~p~~~~~~lW~~y~~~~~~-----~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~----~~~~~~AR~  602 (697)
                      +++..-++.    .|......+..     ..+.+...|++++..   .     .+..+..+...+..    .++.++|..
T Consensus       321 ~a~~~~~~~----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~  388 (490)
T 2xm6_A          321 KSAEQGDAT----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---G-----EKAAQFNLGNALLQGKGVKKDEQQAAI  388 (490)
T ss_dssp             HHHHTTCHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHhcCCHH----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            998754432    22222222222     114566778887752   1     12222222333444    589999999


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC---CchHHHHHHHHHHh--cCChhhHHHH
Q 005434          603 MYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ---NTSLWRDYYSTETK--LGTSETATAV  677 (697)
Q Consensus       603 iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~---~~~lW~~y~~fE~~--~G~~~~a~~v  677 (697)
                      .|++++...++.....+..+... ..+   ...+.+.|...|++|+...+.   ++..+.....+...  .+..+.++.+
T Consensus       389 ~~~~A~~~~~~~a~~~Lg~~y~~-g~g---~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~  464 (490)
T 2xm6_A          389 WMRKAAEQGLSAAQVQLGEIYYY-GLG---VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQY  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-TSS---SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHc-CCC---CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            99999997543333333333222 222   123899999999999998743   44444333332222  1222335555


Q ss_pred             HHHH
Q 005434          678 YWRA  681 (697)
Q Consensus       678 y~ra  681 (697)
                      ++++
T Consensus       465 ~~~~  468 (490)
T 2xm6_A          465 IEKY  468 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.75  E-value=2e-06  Score=84.07  Aligned_cols=211  Identities=9%  Similarity=-0.073  Sum_probs=138.7

Q ss_pred             CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC-chh-HHHHHHHHHHHHhcCCcccccCCCCCc
Q 005434          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSM-IFDLYTKFLMDMIAPKKEETRDSELPS  438 (697)
Q Consensus       361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~-~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~  438 (697)
                      |.++..|...+..++.             .++++.|...|+++++..| ... .|........                 
T Consensus         4 ~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-----------------   53 (228)
T 4i17_A            4 TTDPNQLKNEGNDALN-------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-----------------   53 (228)
T ss_dssp             CCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-----------------
T ss_pred             ccCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-----------------
Confidence            4567788888888775             4889999999999999886 432 2222111111                 


Q ss_pred             hhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH-------HHHHHHHHhc
Q 005434          439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL-------LRISVEIRCV  511 (697)
Q Consensus       439 ~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~-------~~i~l~~~~~  511 (697)
                       ..+..+.|...|++++..+|.+...|...+..+...|++++|...+++++ ...|++..++.       .........+
T Consensus        54 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~  131 (228)
T 4i17_A           54 -NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAG  131 (228)
T ss_dssp             -HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence             13558899999999999999999999999999999999999999999999 78999885544       3333333333


Q ss_pred             ccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH-
Q 005434          512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINL-  590 (697)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~-  590 (697)
                                +.+++.+.|+++++.-|..-....|......+...   ...+++++.....        .. ...|... 
T Consensus       132 ----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~---~~~~~~~a~~~~~--------~~-~~~~~~~~  189 (228)
T 4i17_A          132 ----------NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN---GADVLRKATPLAS--------SN-KEKYASEK  189 (228)
T ss_dssp             ----------CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH---HHHHHHHHGGGTT--------TC-HHHHHHHH
T ss_pred             ----------cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH---HHHHHHHHHhccc--------CC-HHHHHHHH
Confidence                      57899999999998766410234444333222211   1222343332110        11 2223222 


Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE  625 (697)
                      ....+.+++|...|+++++..|.+.........+.
T Consensus       190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            23345677888888888887777766555544443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.74  E-value=3.2e-06  Score=86.86  Aligned_cols=257  Identities=12%  Similarity=0.073  Sum_probs=181.5

Q ss_pred             HHHHHHHHhc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHH
Q 005434          163 KYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--NVTAARALMQNGLRVCPTSEELWVEYLRMELT  238 (697)
Q Consensus       163 ~y~~~~~~~~--~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~--~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~  238 (697)
                      .|+.-..+.+  ..++..+++++|..+|.+..+|..-..... ..+  +++.+-..++.+|..+|++..+|..-..+...
T Consensus        37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence            4444344444  358999999999999999999998888774 677  99999999999999999999999876544422


Q ss_pred             HHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHH
Q 005434          239 YLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG  318 (697)
Q Consensus       239 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~  318 (697)
                      ....       ++..                                                     ...+.+..++++
T Consensus       116 ~~~~-------l~~~-----------------------------------------------------~~~~~EL~~~~~  135 (306)
T 3dra_A          116 IMEL-------NNND-----------------------------------------------------FDPYREFDILEA  135 (306)
T ss_dssp             HHHH-------TTTC-----------------------------------------------------CCTHHHHHHHHH
T ss_pred             HHHh-------cccc-----------------------------------------------------CCHHHHHHHHHH
Confidence            1110       0000                                                     012456788999


Q ss_pred             HHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHH
Q 005434          319 AVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ  398 (697)
Q Consensus       319 al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~  398 (697)
                      +++..|+++..|..---++..++... ....-..++++++..|.+...|.......... ..      ......++.+.+
T Consensus       136 ~l~~~pkny~aW~~R~~vl~~l~~~~-~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~------~~~~~~~~eEl~  207 (306)
T 3dra_A          136 MLSSDPKNHHVWSYRKWLVDTFDLHN-DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KH------LATDNTIDEELN  207 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GG------GCCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cc------cchhhhHHHHHH
Confidence            99999999998876665666665321 12566778999999999999998766554321 00      000234888999


Q ss_pred             HHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHh
Q 005434          399 VYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQ  474 (697)
Q Consensus       399 vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~---~~~~~lw~~y~~l~~~  474 (697)
                      .+++++...|... .|. |..+.......                ..+.+....++++..+   |.++-.|...++.+.+
T Consensus       208 ~~~~aI~~~p~n~SaW~-y~~~ll~~~~~----------------~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~  270 (306)
T 3dra_A          208 YVKDKIVKCPQNPSTWN-YLLGIHERFDR----------------SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ  270 (306)
T ss_dssp             HHHHHHHHCSSCHHHHH-HHHHHHHHTTC----------------CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCccHHH-HHHHHHHhcCC----------------ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence            9999999998876 887 55555443311                1222334444444333   7788888888899989


Q ss_pred             cCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          475 LGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       475 ~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                      .|+.++|.++++++.....|-....|.-.+.
T Consensus       271 ~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          271 QKKYNESRTVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             TTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence            9999999999999984368888999986553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.73  E-value=8.5e-07  Score=82.53  Aligned_cols=171  Identities=13%  Similarity=0.004  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (697)
Q Consensus       462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~  541 (697)
                      ...|...+..+...|++++|...+++++ ...|.+...|..........+          +.+.+.+.|++++...|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~~~~~~~-   75 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVY-DADAFDVDVALHLGIAYVKTG----------AVDRGTELLERSLADAPDN-   75 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTC-CTTSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTC-
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCccChHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCCC-
Confidence            4567778888889999999999999999 788998888888877776665          3688888888888765532 


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005434          542 SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC  621 (697)
Q Consensus       542 ~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~  621 (697)
                       ..+|...+                                      ......|++++|.+.|++++...|.....+...
T Consensus        76 -~~~~~~~a--------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  116 (186)
T 3as5_A           76 -VKVATVLG--------------------------------------LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL  116 (186)
T ss_dssp             -HHHHHHHH--------------------------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -HHHHHHHH--------------------------------------HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence             23332211                                      122345788899999999998888888888887


Q ss_pred             HHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          622 IELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      +.+....+      +.+.|..+|++++...|.++..|...+......|+.+.|..++.+++...+++.
T Consensus       117 a~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          117 GVALDNLG------RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcC------cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            77777777      889999999999999888888999999988899999999999999988876553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.69  E-value=4e-07  Score=104.97  Aligned_cols=172  Identities=10%  Similarity=0.017  Sum_probs=145.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      .|.+++.|...+..+...|++++|...+++|+ +..|++...|.....+....|          +.+++.+.|++|++.-
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~P~~~~a~~nLg~~l~~~g----------~~~eA~~~~~~Al~l~   73 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQG----------KLQEALMHYKEAIRIS   73 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhC
Confidence            57788999999999999999999999999999 799999999998888887776          3788889999999866


Q ss_pred             ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434          538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL  617 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~  617 (697)
                      |..  ...|....                                      ..+...|++++|.+.|+++++..|.....
T Consensus        74 P~~--~~a~~nLg--------------------------------------~~l~~~g~~~~A~~~~~kAl~l~P~~~~a  113 (723)
T 4gyw_A           74 PTF--ADAYSNMG--------------------------------------NTLKEMQDVQGALQCYTRAIQINPAFADA  113 (723)
T ss_dssp             TTC--HHHHHHHH--------------------------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCC--HHHHHHHH--------------------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            532  23332111                                      11235688999999999999999999998


Q ss_pred             HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      |...+.+...+|      +.+.|.+.|++|++..|.++..|......-...|+.+.|...|++++...+
T Consensus       114 ~~~Lg~~~~~~g------~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          114 HSNLASIHKDSG------NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence            888888888888      899999999999999999999999999999999999999999999988764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.67  E-value=0.00096  Score=73.16  Aligned_cols=382  Identities=10%  Similarity=-0.071  Sum_probs=233.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005434          178 KVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGED  253 (697)
Q Consensus       178 ~~~~ral~~~p~~~~lW~~~a~~e~~~----~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~  253 (697)
                      ..+.++.  .+.++......+.... .    .++.+.|...|++++..  ++...+.....+...            |..
T Consensus        28 ~~~~~~a--~~g~~~a~~~lg~~y~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~------------g~g   90 (490)
T 2xm6_A           28 EQLKQKA--ESGEAKAQLELGYRYF-QGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMN------------GEG   90 (490)
T ss_dssp             HHHHHHH--HTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH------------TSS
T ss_pred             HHHHHHH--HCCCHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc------------CCC
Confidence            3444443  3567788877777765 5    68999999999999986  344444333322211            110


Q ss_pred             cccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHH
Q 005434          254 KGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRF  333 (697)
Q Consensus       254 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~  333 (697)
                      .                                                   .++.+.|...|++|.+.  .+......+
T Consensus        91 ~---------------------------------------------------~~~~~~A~~~~~~a~~~--~~~~a~~~L  117 (490)
T 2xm6_A           91 V---------------------------------------------------PQDYAQAVIWYKKAALK--GLPQAQQNL  117 (490)
T ss_dssp             S---------------------------------------------------CCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             C---------------------------------------------------CCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            0                                                   01346788889988874  233444444


Q ss_pred             HHHHHHc-cccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhH
Q 005434          334 FEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI  412 (697)
Q Consensus       334 ~~~~~~f-e~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~l  412 (697)
                      -.++..- +.....+.+...++++...  .++..+..++..+.....         +.++.++|...|+++++.-. ...
T Consensus       118 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---------~~~d~~~A~~~~~~a~~~~~-~~a  185 (490)
T 2xm6_A          118 GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDG---------VTRDYVMAREWYSKAAEQGN-VWS  185 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS---------SCCCHHHHHHHHHHHHHTTC-HHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---------CCCCHHHHHHHHHHHHHCCC-HHH
Confidence            4444331 1112456777778877664  567888889988865311         24678999999999988632 222


Q ss_pred             HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 005434          413 FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKL  488 (697)
Q Consensus       413 w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~a  488 (697)
                      +......... ..  .           ..++.+++...|+++...+  ++..+...+.++..    .+++++|...++++
T Consensus       186 ~~~Lg~~y~~-g~--g-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  249 (490)
T 2xm6_A          186 CNQLGYMYSR-GL--G-----------VERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS  249 (490)
T ss_dssp             HHHHHHHHHH-TS--S-----------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CC--C-----------CCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            2212222111 00  0           1345789999999999863  56777778888876    78999999999999


Q ss_pred             hhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh-------hHHHH
Q 005434          489 CSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQ-------KHYFD  561 (697)
Q Consensus       489 l~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~-------~~~~~  561 (697)
                      + ..  .+...+.....+... +.   +  ...+.+++.+.|++++..-++.    .+......+...       .+.+.
T Consensus       250 ~-~~--~~~~a~~~lg~~y~~-g~---~--~~~d~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~~~~~g~~~~~~~A~  316 (490)
T 2xm6_A          250 A-EQ--GNSIAQFRLGYILEQ-GL---A--GAKEPLKALEWYRKSAEQGNSD----GQYYLAHLYDKGAEGVAKNREQAI  316 (490)
T ss_dssp             H-TT--TCHHHHHHHHHHHHH-TT---T--SSCCHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred             H-HC--CCHHHHHHHHHHHHC-CC---C--CCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHcCCCCCcCCHHHHH
Confidence            9 33  233333333333332 11   0  0125788999999998653322    222222222221       25677


Q ss_pred             HHHHHHHHhhhhCCCCCCCCChHHHHHHHHH-HhC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-cCCCCCccc
Q 005434          562 KLVEIALISVAKDGGGESGFSLPSAIINLVI-QKD---GIQQAREMYKRFLALPRPGLVLYQNCIELENN-LASVGDKDS  636 (697)
Q Consensus       562 ~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~-~~~---~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~-~~~~~~~~~  636 (697)
                      ..|+++...   .     ... ....+-.+. ..|   +.++|...|+++++...  ...+.....+... .+   ...+
T Consensus       317 ~~~~~a~~~---~-----~~~-a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g---~~~~  382 (490)
T 2xm6_A          317 SWYTKSAEQ---G-----DAT-AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--KAAQFNLGNALLQGKG---VKKD  382 (490)
T ss_dssp             HHHHHHHHT---T-----CHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSS---SCCC
T ss_pred             HHHHHHHhc---C-----CHH-HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCC---CCCC
Confidence            788887752   1     111 122222222 223   68999999999999743  4444443433322 11   1238


Q ss_pred             HHHHHHHHHHHHhhCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHHhhcC
Q 005434          637 LVNARKLFESALATYDQNTSLWRDYYSTETK----LGTSETATAVYWRARKTLK  686 (697)
Q Consensus       637 ~~raR~lye~al~~~~~~~~lW~~y~~fE~~----~G~~~~a~~vy~ral~~~~  686 (697)
                      .+.|..+|++++..  .++..|.....+-..    .|+.+.|...|++|+..-+
T Consensus       383 ~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            99999999999986  356777777776665    7999999999999998763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.60  E-value=9e-07  Score=90.18  Aligned_cols=211  Identities=14%  Similarity=0.049  Sum_probs=147.9

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (697)
Q Consensus       459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~  531 (697)
                      |.....|...+..+...|++++|..++++++..       ..|.....|..........+          +.+.+.+.|+
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~   93 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------KYKDAANLLN   93 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT----------CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC----------CHHHHHHHHH
Confidence            455678888899999999999999999999831       34556677777666666655          4788888999


Q ss_pred             HHHhhc-----C-hhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHH
Q 005434          532 CILTKV-----S-ALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQA  600 (697)
Q Consensus       532 ~al~~~-----p-~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~A  600 (697)
                      +++...     + .......|...+..+...+  +.+...|++++.......+. ..+.....   ........|++++|
T Consensus        94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A  172 (311)
T 3nf1_A           94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNNLALLCQNQGKYEEV  172 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHH
Confidence            998753     1 1112344444444444433  56777888887754221000 01222222   33445678999999


Q ss_pred             HHHHHHHHhC--------CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC---------------------
Q 005434          601 REMYKRFLAL--------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---------------------  651 (697)
Q Consensus       601 R~iy~~~i~~--------~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~---------------------  651 (697)
                      ...|++++..        .|.....+...+.+....+      +.+.|..+|++++...                     
T Consensus       173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  246 (311)
T 3nf1_A          173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE  246 (311)
T ss_dssp             HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999986        3333456777777777778      8999999999999752                     


Q ss_pred             ----------------------------CCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          652 ----------------------------DQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       652 ----------------------------~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                                                  +..+.+|...+..-...|+.+.|..+|++|++..+
T Consensus       247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             HHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                                        12346788888888899999999999999998654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.59  E-value=1.6e-06  Score=80.66  Aligned_cols=167  Identities=13%  Similarity=-0.028  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434          159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (697)
Q Consensus       159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~  237 (697)
                      ..|...+......| ...+...|++++...|.++..|...+.... ..|+.+.|...+++++...|.+..+|...+....
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555555555555 467888888888888888888888888875 7888999999999999888887777766554432


Q ss_pred             HHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHH
Q 005434          238 TYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYS  317 (697)
Q Consensus       238 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~  317 (697)
                      ..                                                                   ++.+.|...|+
T Consensus        88 ~~-------------------------------------------------------------------~~~~~A~~~~~  100 (186)
T 3as5_A           88 QV-------------------------------------------------------------------QKYDLAVPLLI  100 (186)
T ss_dssp             HH-------------------------------------------------------------------TCHHHHHHHHH
T ss_pred             Hh-------------------------------------------------------------------cCHHHHHHHHH
Confidence            21                                                                   12346777888


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHH
Q 005434          318 GAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAI  397 (697)
Q Consensus       318 ~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~  397 (697)
                      ++++..|.+...+..+...+...+   ..+.+...++++++..|+++..|..++..+..             .++++.|.
T Consensus       101 ~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~  164 (186)
T 3as5_A          101 KVAEANPINFNVRFRLGVALDNLG---RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-------------MGRHEEAL  164 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHHHHH
T ss_pred             HHHhcCcHhHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-------------cCCHHHHH
Confidence            888877777766666655554432   35678888888888899888889888888865             47789999


Q ss_pred             HHHHHHhhcCCc
Q 005434          398 QVYEEALKNVPS  409 (697)
Q Consensus       398 ~vye~al~~~~~  409 (697)
                      ..|+++++..|+
T Consensus       165 ~~~~~~~~~~~~  176 (186)
T 3as5_A          165 PHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCC
Confidence            999999876554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.57  E-value=2.7e-05  Score=78.17  Aligned_cols=139  Identities=14%  Similarity=0.040  Sum_probs=95.2

Q ss_pred             CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchh
Q 005434          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV  440 (697)
Q Consensus       361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~  440 (697)
                      |.++..+..++..+..             .+++++|...|+++++.-+ ...+......... ..  .           .
T Consensus         3 ~~~~~a~~~lg~~~~~-------------~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~-g~--~-----------~   54 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYK-------------EKDFTQAKKYFEKACDLKE-NSGCFNLGVLYYQ-GQ--G-----------V   54 (273)
T ss_dssp             --CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH-TS--S-----------S
T ss_pred             CCChHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHc-CC--C-----------c
Confidence            5677888888888765             3779999999999998322 2222222222111 00  0           1


Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCC
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF  516 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~  516 (697)
                      .+..+.|...|++|+..+  ++..+...+.++..    .+++++|...+++++. .  ++...|.....+......    
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~--~~~~a~~~lg~~~~~~~~----  125 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-L--KYAEGCASLGGIYHDGKV----  125 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHCSS----
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-c--CCccHHHHHHHHHHcCCC----
Confidence            345789999999999875  78899999999999    9999999999999994 3  356667666665554100    


Q ss_pred             CCCccchHHHHHHHHHHHhhcC
Q 005434          517 SPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       517 ~~~~~~~~~~~~~f~~al~~~p  538 (697)
                        ...+.+++.+.|++++..-+
T Consensus       126 --~~~~~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A          126 --VTRDFKKAVEYFTKACDLND  145 (273)
T ss_dssp             --SCCCHHHHHHHHHHHHHTTC
T ss_pred             --cccCHHHHHHHHHHHHhcCc
Confidence              01157889999999987543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.56  E-value=1.5e-06  Score=100.31  Aligned_cols=169  Identities=14%  Similarity=0.084  Sum_probs=129.3

Q ss_pred             CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHH
Q 005434          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA  403 (697)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~a  403 (697)
                      |++.+.+..+-.++..-+   ..+.+...++++++..|++...|..++..+..             .+++++|...|++|
T Consensus         6 P~~a~al~nLG~~~~~~G---~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-------------~g~~~eA~~~~~~A   69 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-------------QGKLQEALMHYKEA   69 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHH
Confidence            444455555444444332   35778888999999999999999999988875             47899999999999


Q ss_pred             hhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434          404 LKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (697)
Q Consensus       404 l~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~  482 (697)
                      ++..|+.. .|.........                  .+..+.|...|++|++.+|.+.+.|...+..+...|++++|.
T Consensus        70 l~l~P~~~~a~~nLg~~l~~------------------~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi  131 (723)
T 4gyw_A           70 IRISPTFADAYSNMGNTLKE------------------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI  131 (723)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99887653 33333332222                  355788999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      ..+++|+ +..|++...|.....+....+.          .+.+.+.|++++...
T Consensus       132 ~~~~~Al-~l~P~~~~a~~~L~~~l~~~g~----------~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          132 ASYRTAL-KLKPDFPDAYCNLAHCLQIVCD----------WTDYDERMKKLVSIV  175 (723)
T ss_dssp             HHHHHHH-HHCSCCHHHHHHHHHHHHHTTC----------CTTHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhCCCChHHHhhhhhHHHhccc----------HHHHHHHHHHHHHhC
Confidence            9999999 7889999999888887777664          455666677776543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.56  E-value=1.1e-06  Score=90.27  Aligned_cols=225  Identities=13%  Similarity=-0.050  Sum_probs=153.5

Q ss_pred             hHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhc
Q 005434          442 HYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGK------LSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~------~P~~~~lW~~~i~l~~~~~  511 (697)
                      +..+.|...|++++..+|.++    .++...+..+...|++++|...+++++ ..      .|.....|..........+
T Consensus        19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-TLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            568899999999999988874    677888999999999999999999987 32      2223556655555555555


Q ss_pred             ccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHH--hh--------------------hHHHHHHHH
Q 005434          512 TRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFM--NQ--------------------KHYFDKLVE  565 (697)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~--~~--------------------~~~~~~l~~  565 (697)
                                +.+.+.+.|++++...+...    ....+......+.  ..                    -+.+...++
T Consensus        98 ----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           98 ----------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence                      47888899999987654321    1223332222222  22                    123455566


Q ss_pred             HHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCccc
Q 005434          566 IALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDS  636 (697)
Q Consensus       566 ~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~  636 (697)
                      +++........   .......   ........|++++|...|++++...+..      ...+...+.+....+      +
T Consensus       168 ~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g------~  238 (338)
T 3ro2_A          168 ENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG------E  238 (338)
T ss_dssp             HHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT------C
T ss_pred             HHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC------C
Confidence            66554432211   1111122   2333556899999999999999764321      125566666666777      8


Q ss_pred             HHHHHHHHHHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          637 LVNARKLFESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       637 ~~raR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      .+.|..+|++++...+..      ..++...+......|+.+.|...+.+|+...+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999999887622      36777788888889999999999999988764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.55  E-value=1.2e-06  Score=93.71  Aligned_cols=225  Identities=13%  Similarity=-0.073  Sum_probs=156.6

Q ss_pred             hHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhc
Q 005434          442 HYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGK------LSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~------~P~~~~lW~~~i~l~~~~~  511 (697)
                      +..+.|...|++++..+|.++    .+|...+..+...|++++|...+++++ ..      .|.....|.....+....+
T Consensus        62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL-TLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            557899999999999988876    578888999999999999999999998 33      2445566666666665555


Q ss_pred             ccCCCCCCccchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHh--h-----------------hHHHHHHHHHHH
Q 005434          512 TRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMN--Q-----------------KHYFDKLVEIAL  568 (697)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~----~~~~~lW~~y~~~~~~--~-----------------~~~~~~l~~~a~  568 (697)
                                +.+.+.+.|++++...+.    ......|......+..  .                 -+.+...|++++
T Consensus       141 ----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          141 ----------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence                      478888899999875421    1122333333322222  2                 123455566665


Q ss_pred             HhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHhccCCCCCcccHHH
Q 005434          569 ISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPGL------VLYQNCIELENNLASVGDKDSLVN  639 (697)
Q Consensus       569 ~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~~------~~~~~~i~lE~~~~~~~~~~~~~r  639 (697)
                      ........   .......   ........|++++|...|++++...+...      ..+...+.+....+      +.+.
T Consensus       211 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~  281 (411)
T 4a1s_A          211 KLMRDLGD---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG------QFED  281 (411)
T ss_dssp             HHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT------CHHH
T ss_pred             HHHHHcCC---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc------CHHH
Confidence            54432210   1111122   23335678999999999999998654321      25566666667777      8999


Q ss_pred             HHHHHHHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          640 ARKLFESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       640 aR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      |...|++++...+..      ..+|...+......|+.+.|...+++++...+
T Consensus       282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999987722      36788888888899999999999999988754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.52  E-value=2.1e-06  Score=91.11  Aligned_cols=226  Identities=12%  Similarity=-0.058  Sum_probs=156.2

Q ss_pred             hHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--c---CCCcHHHHHHHHHHHHHhcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSG--K---LSDSVQLWLLRISVEIRCVT  512 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~--~---~P~~~~lW~~~i~l~~~~~~  512 (697)
                      +..+.|...|++++..+|.++    .+|...+..+...|++++|...+++++..  .   .|.....|..........| 
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-  101 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG-  101 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC-
Confidence            568899999999999988874    57888899999999999999999998731  1   2223556655555555555 


Q ss_pred             cCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHH--hh--------------------hHHHHHHHHH
Q 005434          513 RNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFM--NQ--------------------KHYFDKLVEI  566 (697)
Q Consensus       513 ~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~--~~--------------------~~~~~~l~~~  566 (697)
                               +.+.+...|++++...+...    ....|......+.  ..                    -+.+...|++
T Consensus       102 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A          102 ---------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence                     47888899999988654321    1223333222222  22                    2345566777


Q ss_pred             HHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHhccCCCCCcccH
Q 005434          567 ALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPGL------VLYQNCIELENNLASVGDKDSL  637 (697)
Q Consensus       567 a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~~~------~~~~~~i~lE~~~~~~~~~~~~  637 (697)
                      ++........   .+.....|   .......|++++|...|++++...|...      ..+...+.+....+      +.
T Consensus       173 al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~  243 (406)
T 3sf4_A          173 NLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG------EF  243 (406)
T ss_dssp             HHHHHHHTTC---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CH
T ss_pred             HHHHHHhccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC------Ch
Confidence            7665443221   12222222   3335568999999999999998644321      25666666666777      89


Q ss_pred             HHHHHHHHHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          638 VNARKLFESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       638 ~raR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      +.|...|++++...+..      ..++...+......|+.+.|...+.+|+...+
T Consensus       244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            99999999999887632      36777888888889999999999999988754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.52  E-value=3.6e-05  Score=77.22  Aligned_cols=250  Identities=12%  Similarity=-0.019  Sum_probs=169.4

Q ss_pred             cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCHHH
Q 005434          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQNGLRVCPTSEEL  228 (697)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~----~~~~~~aR~~~~r~l~~~p~~~~l  228 (697)
                      .|++...|..........+ ..++...|++++.  |.++..|...+.... .    .++.+.|...|++++...  +...
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNG   76 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence            4778888888888777766 4688999999998  788899998888875 7    899999999999999875  4555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhh
Q 005434          229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG  308 (697)
Q Consensus       229 W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (697)
                      |.....+...            +...                                                   ..+
T Consensus        77 ~~~lg~~~~~------------g~~~---------------------------------------------------~~~   93 (273)
T 1ouv_A           77 CHLLGNLYYS------------GQGV---------------------------------------------------SQN   93 (273)
T ss_dssp             HHHHHHHHHH------------TSSS---------------------------------------------------CCC
T ss_pred             HHHHHHHHhC------------CCCc---------------------------------------------------ccC
Confidence            5544433211            1000                                                   013


Q ss_pred             hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-cccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (697)
Q Consensus       309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~  387 (697)
                      .+.|...|++|++.  ++...+..+-.++..- ......+.+...++++.+..  ++..+..++..+.....        
T Consensus        94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~--------  161 (273)
T 1ouv_A           94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRG--------  161 (273)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS--------
T ss_pred             HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCC--------
Confidence            45778888888875  2445555555555431 00124567788888887754  56778888888764210        


Q ss_pred             ccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       388 ~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                       ..++.++|...|+++++.-+. ..+......... ..  .           ..++.++|...|++++..++  +..+..
T Consensus       162 -~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~-g~--~-----------~~~~~~~A~~~~~~a~~~~~--~~a~~~  223 (273)
T 1ouv_A          162 -TPKDLKKALASYDKACDLKDS-PGCFNAGNMYHH-GE--G-----------ATKNFKEALARYSKACELEN--GGGCFN  223 (273)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH-TC--S-----------SCCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHc-CC--C-----------CCccHHHHHHHHHHHHhCCC--HHHHHH
Confidence             136789999999999976432 222222222221 00  0           13558899999999999865  778888


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHH
Q 005434          468 YVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLL  502 (697)
Q Consensus       468 y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (697)
                      .+.++..    .+++++|...+++|+ ...|+....+..
T Consensus       224 l~~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~l~  261 (273)
T 1ouv_A          224 LGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKGACDILK  261 (273)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             HHHHHHcCCCcccCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            8899998    899999999999999 666765555543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.51  E-value=0.002  Score=77.09  Aligned_cols=180  Identities=12%  Similarity=0.069  Sum_probs=122.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      +..-|...++.+...|++++|...|.+|         ..|...+..+.+.+.          ++.+.+.+.+|.      
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge----------~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE----------YQAAVDGARKAN------ 1248 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC----------HHHHHHHHHHhC------
Confidence            3355668999999999999999999885         377777777777763          678877788772      


Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 005434          541 ESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQN  620 (697)
Q Consensus       541 ~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~  620 (697)
                       ....|.....-....++     |+.|..... ..  ...+.....-+.++...|.+++|..++++++...|....+|..
T Consensus      1249 -n~~aWkev~~acve~~E-----f~LA~~cgl-~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A         1249 -STRTWKEVCFACVDGKE-----FRLAQMCGL-HI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred             -CHHHHHHHHHHHhhhhH-----HHHHHHHHH-hh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence             24668754432222222     222222110 00  0022223345667788999999999999999998877778866


Q ss_pred             HHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-----CCchHHHHHHHHHHhcCChhhHHHHH
Q 005434          621 CIELENNLASVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKLGTSETATAVY  678 (697)
Q Consensus       621 ~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~~a~~vy  678 (697)
                      ...+..+...    .++-..-++|+..+...+     ....+|..+.-+=.+.|+.++|...+
T Consensus      1320 LaiLyaKy~p----eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1320 LAILYSKFKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             HHHHHHhCCH----HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            6666655541    256666667887777655     34589999999999999999888443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.47  E-value=1.5e-05  Score=79.66  Aligned_cols=198  Identities=11%  Similarity=0.056  Sum_probs=134.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434          151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (697)
Q Consensus       151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~  226 (697)
                      ....|++...+...+......| +..+...|++++..+|.+   +..|...+...+ ..|+.+.|...|++++...|+++
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCc
Confidence            3456888888888888777777 678999999999999998   889999988886 79999999999999999999775


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhh
Q 005434          227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE  306 (697)
Q Consensus       227 ~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (697)
                      ..-..+..+-..+..        .+..                        ...                        ..
T Consensus        87 ~~~~a~~~lg~~~~~--------~~~~------------------------~~~------------------------~~  110 (261)
T 3qky_A           87 RVPQAEYERAMCYYK--------LSPP------------------------YEL------------------------DQ  110 (261)
T ss_dssp             THHHHHHHHHHHHHH--------HCCC------------------------TTS------------------------CC
T ss_pred             hhHHHHHHHHHHHHH--------hccc------------------------ccc------------------------cc
Confidence            433333322211100        0000                        000                        01


Q ss_pred             hhhhHHHHHHHHHHhcCCCchHHHHH-----------------HHHHHHHccccCcHHHHHHHHHHHHhhCCCC---hhh
Q 005434          307 QGLRVLQTIYSGAVEALPSSFNLRQR-----------------FFEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKY  366 (697)
Q Consensus       307 ~~~~~a~~iy~~al~~~p~~~~~~~~-----------------~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~---~~~  366 (697)
                      ++.+.|...|+++++..|++......                 +-.++..  . .....+...++.+++.+|++   +..
T Consensus       111 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~-g~~~~A~~~~~~~l~~~p~~~~~~~a  187 (261)
T 3qky_A          111 TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER--R-ELYEAAAVTYEAVFDAYPDTPWADDA  187 (261)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred             hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c-cCHHHHHHHHHHHHHHCCCCchHHHH
Confidence            24578889999999888876544422                 2222222  1 24678888999999999985   456


Q ss_pred             HHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh
Q 005434          367 WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM  411 (697)
Q Consensus       367 w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~  411 (697)
                      +..++..+...+....   .....+++++|...|+++++..|+..
T Consensus       188 ~~~l~~~~~~~g~~~~---~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          188 LVGAMRAYIAYAEQSV---RARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHHHHTSC---GGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHhcccch---hhcccchHHHHHHHHHHHHHHCCCCh
Confidence            7777777653100000   00013789999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.46  E-value=6.7e-07  Score=81.69  Aligned_cols=124  Identities=9%  Similarity=-0.000  Sum_probs=98.2

Q ss_pred             HHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCC
Q 005434          356 MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDS  434 (697)
Q Consensus       356 ~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~  434 (697)
                      +....|+++..|..+|+.+..             .+++++|...|+++++..|... .|.........            
T Consensus        23 a~~~~p~~~~~~~~la~~y~~-------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~------------   77 (150)
T 4ga2_A           23 STPSPRQKSIKGFYFAKLYYE-------------AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL------------   77 (150)
T ss_dssp             HSCSHHHHHTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------
T ss_pred             hcccCcccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Confidence            333344556678888888875             4889999999999999988764 55444433332            


Q ss_pred             CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK-LAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       435 ~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~-l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                            .+..+.|...|++|+..+|.+++.|...+.++...|++++|.+ .+++|+ ...|+++.+|..+..+....|
T Consensus        78 ------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al-~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           78 ------EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA-KLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             ------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTCC
T ss_pred             ------cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhC
Confidence                  3558899999999999999999999999999999999876555 469999 789999999998887776555

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.46  E-value=1.8e-06  Score=80.97  Aligned_cols=170  Identities=16%  Similarity=0.104  Sum_probs=127.2

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      |...+.++..+..+...|++++|...+++++ ...|++...|.....+....|.          .+.+...|++++...|
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLS-DELQSRGDVKLAKADCLLETKQ----------FELAQELLATIPLEYQ   71 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHTSHHHHHHHHHHHHHTTC----------HHHHHHHHTTCCGGGC
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHhhhccC
Confidence            3334556777888889999999999999999 7889999999998888877763          6888888888876655


Q ss_pred             hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHH
Q 005434          539 ALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY  618 (697)
Q Consensus       539 ~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~  618 (697)
                       .  ..++......                                    ... ..++...|...|++++...|.+...+
T Consensus        72 -~--~~~~~~~~~~------------------------------------~~~-~~~~~~~a~~~~~~al~~~P~~~~~~  111 (176)
T 2r5s_A           72 -D--NSYKSLIAKL------------------------------------ELH-QQAAESPELKRLEQELAANPDNFELA  111 (176)
T ss_dssp             -C--HHHHHHHHHH------------------------------------HHH-HHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred             -C--hHHHHHHHHH------------------------------------HHH-hhcccchHHHHHHHHHHhCCCCHHHH
Confidence             2  2222111100                                    000 01122246778899999888888888


Q ss_pred             HHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       619 ~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      ...+.+....|      +.+.|...|++++...|..  +..|......-...|+.+.+...|.+++.++
T Consensus       112 ~~la~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          112 CELAVQYNQVG------RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYSI  174 (176)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc------cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            88888888888      8999999999999998843  5689999999889999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.45  E-value=7.8e-06  Score=83.39  Aligned_cols=169  Identities=12%  Similarity=-0.062  Sum_probs=130.0

Q ss_pred             CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (697)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~  402 (697)
                      .|++.+.+...-..+..-   ...+.+...++++++..|+++..+..+|..++.             .++++.|...|++
T Consensus       113 lp~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-------------~g~~~~A~~~l~~  176 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQE---SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-------------LNRSEDAEAVLXT  176 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-------------TTCHHHHHHHHTT
T ss_pred             cCCchhhHHHHHHHHHhC---CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-------------CCCHHHHHHHHHh
Confidence            477666555544444332   246789999999999999999999999999876             4889999999999


Q ss_pred             HhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434          403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (697)
Q Consensus       403 al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~  482 (697)
                      ++...|..............                 ..+..+.+...|++++..+|.+++.+..++..+...|++++|.
T Consensus       177 ~~~~~p~~~~~~~~~~~~l~-----------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~  239 (287)
T 3qou_A          177 IPLQDQDTRYQGLVAQIELL-----------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL  239 (287)
T ss_dssp             SCGGGCSHHHHHHHHHHHHH-----------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CchhhcchHHHHHHHHHHHH-----------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence            99888865322222221111                 0122345788899999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCc--HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434          483 KLAAKLCSGKLSDS--VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (697)
Q Consensus       483 ~l~~~al~~~~P~~--~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~  535 (697)
                      ..+.+++ ...|+.  ...|...+.+....|.          .+.+...|.+++.
T Consensus       240 ~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~----------~~~a~~~~r~al~  283 (287)
T 3qou_A          240 ELLFGHL-RXDLTAADGQTRXTFQEILAALGT----------GDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCT----------TCHHHHHHHHHHH
T ss_pred             HHHHHHH-hcccccccchHHHHHHHHHHHcCC----------CCcHHHHHHHHHH
Confidence            9999999 788987  8899988888877764          4556666888765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.45  E-value=3.1e-06  Score=86.13  Aligned_cols=245  Identities=11%  Similarity=0.007  Sum_probs=149.1

Q ss_pred             CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC------chh---HHHHHHHHHHHHhcCCccc
Q 005434          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP------SSM---IFDLYTKFLMDMIAPKKEE  430 (697)
Q Consensus       360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~------~~~---lw~~yi~~~~~~~~~~~~~  430 (697)
                      .|.....|..++..+..             .++++.|...|+++++...      ...   .+........         
T Consensus        23 ~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---------   80 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYAS-------------QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR---------   80 (311)
T ss_dssp             SCHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH---------
T ss_pred             chHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---------
Confidence            44456667777877765             4789999999999998421      111   2222222221         


Q ss_pred             ccCCCCCchhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--------C
Q 005434          431 TRDSELPSHVEHYISHLLTVYEKAEAM--------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--------S  494 (697)
Q Consensus       431 ~~~~~~~~~~~~~~~~ar~~ye~al~~--------~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~--------P  494 (697)
                               ..+..+.|...|++++..        .+.....+...+..+...|++++|...+++++ ...        |
T Consensus        81 ---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~  150 (311)
T 3nf1_A           81 ---------DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHP  150 (311)
T ss_dssp             ---------HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCH
T ss_pred             ---------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence                     124577888888888765        24456788889999999999999999999998 432        4


Q ss_pred             CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhhh--HHHHHHHHH
Q 005434          495 DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS------ALESESLWLMALKFFMNQK--HYFDKLVEI  566 (697)
Q Consensus       495 ~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p------~~~~~~lW~~y~~~~~~~~--~~~~~l~~~  566 (697)
                      .....|.....+....+          +.+.+.+.|++++....      .......|...+..+...+  +.+...|++
T Consensus       151 ~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQG----------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45566666666665555          47889999999987521      1112344554444444333  567778888


Q ss_pred             HHHhhhhC---CCCCCCCChHHHHHHH------HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434          567 ALISVAKD---GGGESGFSLPSAIINL------VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL  637 (697)
Q Consensus       567 a~~~~~~~---~~~~~~~~l~~~yl~~------~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~  637 (697)
                      ++...+..   ........++.....+      ....+.+..|...|.+++...|.....+...+.+....|      +.
T Consensus       221 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~  294 (311)
T 3nf1_A          221 ILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQG------KF  294 (311)
T ss_dssp             HHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHT------CH
T ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCC------CH
Confidence            87654221   0001122222221111      123455666777888888777766778888888888888      89


Q ss_pred             HHHHHHHHHHHhhCC
Q 005434          638 VNARKLFESALATYD  652 (697)
Q Consensus       638 ~raR~lye~al~~~~  652 (697)
                      +.|..+|++++...+
T Consensus       295 ~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          295 EAAETLEEAAMRSRK  309 (311)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.42  E-value=1.7e-06  Score=86.47  Aligned_cols=230  Identities=13%  Similarity=0.021  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccc
Q 005434          443 YISHLLTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--------SDSVQLWLLRISVEIRCVTR  513 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~-~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~--------P~~~~lW~~~i~l~~~~~~~  513 (697)
                      ..+++..++++....+ |....+|...+..+...|++++|...+.+++ ...        |.....|.....+....+  
T Consensus        23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--   99 (283)
T 3edt_B           23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKRG--   99 (283)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHHHHTTT--
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHHHHHhc--
Confidence            3445555555544333 4567789999999999999999999999998 332        444566666666655554  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhc-----Ch-hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH
Q 005434          514 NSFSPSKADILSIFELLKCILTKV-----SA-LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS  585 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~-----p~-~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~  585 (697)
                              +.+++.+.|++++...     +. ......|...+..+...+  +.+...|++++..+....+. ..+....
T Consensus       100 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~  170 (283)
T 3edt_B          100 --------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAK  170 (283)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHH
T ss_pred             --------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence                    4788999999998753     11 122444544444444444  56778888888764322110 1122222


Q ss_pred             H---HHHHHHHhCCHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434          586 A---IINLVIQKDGIQQAREMYKRFLAL---------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (697)
Q Consensus       586 ~---yl~~~~~~~~~~~AR~iy~~~i~~---------~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~  653 (697)
                      .   ........|++++|...|++++..         .+....+|.....++...+..........+...++.+....+.
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence            2   334456789999999999999975         2333446666665555443221112233333333332222122


Q ss_pred             CchHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434          654 NTSLWRDYYSTETKLGTSETATAVYWRARKT  684 (697)
Q Consensus       654 ~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~  684 (697)
                      ....|...+..-...|+.+.|..+|++|++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3467888888899999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.41  E-value=2e-06  Score=80.53  Aligned_cols=168  Identities=12%  Similarity=0.015  Sum_probs=124.9

Q ss_pred             CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      |+..+.+...+......| ...+...|++++..+|+++.+|...+.... ..|+.+.|...|++++...| ++..+....
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            444445555565555666 578999999999999999999999999986 79999999999999999999 765544333


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (697)
Q Consensus       234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (697)
                      .+...            +.                                                      .+...+.
T Consensus        81 ~~~~~------------~~------------------------------------------------------~~~~~a~   94 (176)
T 2r5s_A           81 KLELH------------QQ------------------------------------------------------AAESPEL   94 (176)
T ss_dssp             HHHHH------------HH------------------------------------------------------HTSCHHH
T ss_pred             HHHHH------------hh------------------------------------------------------cccchHH
Confidence            22110            00                                                      0001356


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC--hhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (697)
Q Consensus       314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~--~~~w~~~a~~~l~~~~~~~~~~~~~~~~  391 (697)
                      ..|+++++..|++...+..+-..+...+   ..+.+...++++++..|+.  +..|..++..+..             .|
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-------------~g  158 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQVG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-------------LG  158 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-------------HC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-------------hC
Confidence            7899999999998888888777776543   4578899999999999875  5588888887754             46


Q ss_pred             HHHHHHHHHHHHhhc
Q 005434          392 QMQKAIQVYEEALKN  406 (697)
Q Consensus       392 ~~~~a~~vye~al~~  406 (697)
                      +.+.|...|+++|..
T Consensus       159 ~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          159 QGNAIASKYRRQLYS  173 (176)
T ss_dssp             SSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHH
Confidence            677899999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.40  E-value=1e-05  Score=82.40  Aligned_cols=169  Identities=12%  Similarity=0.015  Sum_probs=138.9

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      |.+.+.+...+..+...|++++|..++++++ ...|++...|.....+....|.          .+++.+.|++++..-|
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAW-QLSNQNGEIGLLLAETLIALNR----------SEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHTTC----------HHHHHHHHTTSCGGGC
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCcchhHHHHHHHHHHHCCC----------HHHHHHHHHhCchhhc
Confidence            7888899999999999999999999999999 8999999999999988887774          7888888988877665


Q ss_pred             hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHH
Q 005434          539 ALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY  618 (697)
Q Consensus       539 ~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~  618 (697)
                      ..   ..+.....                                    +. +...++.+.|...|++++...|.+...+
T Consensus       183 ~~---~~~~~~~~------------------------------------~~-l~~~~~~~~a~~~l~~al~~~P~~~~~~  222 (287)
T 3qou_A          183 DT---RYQGLVAQ------------------------------------IE-LLXQAADTPEIQQLQQQVAENPEDAALA  222 (287)
T ss_dssp             SH---HHHHHHHH------------------------------------HH-HHHHHTSCHHHHHHHHHHHHCTTCHHHH
T ss_pred             ch---HHHHHHHH------------------------------------HH-HHhhcccCccHHHHHHHHhcCCccHHHH
Confidence            21   11111100                                    00 1123455667888999999999999999


Q ss_pred             HHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434          619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVYWRARKT  684 (697)
Q Consensus       619 ~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy~ral~~  684 (697)
                      ...+.+....|      +.+.|...|++++...|..  ...|......-...|+.+.+...|.|++.+
T Consensus       223 ~~la~~l~~~g------~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          223 TQLALQLHQVG------RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc------cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            99998888888      8999999999999999965  789999999999999999999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.40  E-value=5.1e-05  Score=75.64  Aligned_cols=183  Identities=9%  Similarity=-0.016  Sum_probs=109.6

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      +|.+++.+...+..+...|++++|...+++++ ..+|.+   ...|..........+          +.+.+.+.|++++
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~lg~~~~~~~----------~~~~A~~~~~~~l   79 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGRTHEWAADAQFYLARAYYQNK----------EYLLAASEYERFI   79 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCSCSTTHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCcchHHHHHHHHHHHHHhC----------cHHHHHHHHHHHH
Confidence            45666777777777777777777777777777 666766   666665555555544          3677777777777


Q ss_pred             hhcChhh-hHHHHHHHHHHHHh--------hh--HHHHHHHHHHHHhhhhCCCCCCCCChHH-----------------H
Q 005434          535 TKVSALE-SESLWLMALKFFMN--------QK--HYFDKLVEIALISVAKDGGGESGFSLPS-----------------A  586 (697)
Q Consensus       535 ~~~p~~~-~~~lW~~y~~~~~~--------~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~-----------------~  586 (697)
                      +..|... ....|......+..        .+  +.+...|++++...+..      .....                 .
T Consensus        80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~a~~~~~~~~~~~~~~~~~  153 (261)
T 3qky_A           80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH------ELVDDATQKIRELRAKLARKQYE  153 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC------TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc------hhHHHHHHHHHHHHHHHHHHHHH
Confidence            7655322 12222222221211        22  45666667666543221      11221                 1


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCC----CcccHHHHHHHHHHHHhhCCCCchH
Q 005434          587 IINLVIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVG----DKDSLVNARKLFESALATYDQNTSL  657 (697)
Q Consensus       587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~----~~~~~~raR~lye~al~~~~~~~~l  657 (697)
                      ........|++++|...|++++...|.+   ...+...+.....+|...    ...+.+.|...|++++..+|.++..
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            1333557899999999999999987764   234444443333331000    0027899999999999999977644

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.39  E-value=5.7e-06  Score=75.40  Aligned_cols=134  Identities=6%  Similarity=-0.093  Sum_probs=102.9

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      .+.+++|...|++++...|... .+.........                  .+..+.|...|++++..+|.++..|...
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~------------------~~~~~~A~~~~~~al~~~p~~~~a~~~l   71 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE------------------AKEYDLAKKYICTYINVQERDPKAHRFL   71 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5889999999999988766543 22222222222                  3568999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM  548 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~  548 (697)
                      +.++...|++++|...+++++ ...|++...|.....+....+..         .+.+...+++|++.-|..  ..+|..
T Consensus        72 g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~---------~~aa~~~~~~al~l~P~~--~~~~~l  139 (150)
T 4ga2_A           72 GLLYELEENTDKAVECYRRSV-ELNPTQKDLVLKIAELLCKNDVT---------DGRAKYWVERAAKLFPGS--PAVYKL  139 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCSS---------SSHHHHHHHHHHHHSTTC--HHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHhCcCC--HHHHHH
Confidence            999999999999999999999 79999999999988888776641         133444468999877743  456655


Q ss_pred             HHHHH
Q 005434          549 ALKFF  553 (697)
Q Consensus       549 y~~~~  553 (697)
                      ....+
T Consensus       140 ~~~ll  144 (150)
T 4ga2_A          140 KEQLL  144 (150)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.34  E-value=7e-06  Score=72.42  Aligned_cols=94  Identities=19%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.+..+|...+......| +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV-AMREWSKAQRAYEDA  107 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999999886 899999999999999


Q ss_pred             hhhCCCCHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLR  234 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~  234 (697)
                      ++..|++..++..+.+
T Consensus       108 l~l~P~~~~a~~~l~~  123 (126)
T 4gco_A          108 LQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHCTTCHHHHHHHHH
T ss_pred             HHHCcCCHHHHHHHHH
Confidence            9999999887766543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.33  E-value=0.00058  Score=70.47  Aligned_cols=245  Identities=12%  Similarity=0.020  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--  206 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~--  206 (697)
                      ..++..+++.++..+|.++.+|..--..+...+           .......++.++..+|.++.+|..-.-.. ...+  
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL-~~l~~~  124 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEP  124 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hccCcc
Confidence            357889999999999999999987666655432           13567889999999999999999876555 4666  


Q ss_pred             CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCC
Q 005434          207 NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVEN  286 (697)
Q Consensus       207 ~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  286 (697)
                      .++.+..++++++..+|.+...|..-.-+-..           ++.                                  
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-----------l~~----------------------------------  159 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQ-----------AAV----------------------------------  159 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------TTC----------------------------------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------hCc----------------------------------
Confidence            48999999999999999999999654322111           010                                  


Q ss_pred             CCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccc-c----------CcHHHHHHHHHH
Q 005434          287 TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-A----------QSDDMHDKILSD  355 (697)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~-~----------~~~~~~~~il~~  355 (697)
                                           ..+.+...++++++..|.+...|.....++..+.. .          .....+-..+..
T Consensus       160 ---------------------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~  218 (331)
T 3dss_A          160 ---------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN  218 (331)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred             ---------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence                                 01245667788888889888888776666655421 0          012345556788


Q ss_pred             HHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHH-HHhcCCcccccCC
Q 005434          356 MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLM-DMIAPKKEETRDS  434 (697)
Q Consensus       356 ~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~-~~~~~~~~~~~~~  434 (697)
                      ++...|++...|.++.-......+.. .. .....+.++.+.+.+++.++.-|+.+ |....-... ..+.         
T Consensus       219 ai~~~P~d~SaW~Y~r~ll~~~~~~~-~~-~~~~~~~l~~el~~~~elle~~pd~~-w~l~~~~~~~~~~~---------  286 (331)
T 3dss_A          219 AFFTDPNDQSAWFYHRWLLGAGSGRC-EL-SVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALD---------  286 (331)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHSSSCGG-GC-CHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHC---------
T ss_pred             HHHhCCCCHHHHHHHHHHHHhccCcc-cc-chHHHHHHHHHHHHHHHHHhhCcccc-hHHHHHHHHHHhhc---------
Confidence            89999999999987654443211100 00 01123678899999999999888764 542111111 1111         


Q ss_pred             CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       435 ~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                           ..+..+.++..+++.++.+|....-|.+.
T Consensus       287 -----~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~  315 (331)
T 3dss_A          287 -----PLLYEKETLQYFSTLKAVDPMRAAYLDDL  315 (331)
T ss_dssp             -----TTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             -----ccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence                 01334578888999998899876666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.33  E-value=2.7e-06  Score=98.02  Aligned_cols=165  Identities=12%  Similarity=-0.052  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc
Q 005434          442 HYISHLLTVYEKAE--------AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR  513 (697)
Q Consensus       442 ~~~~~ar~~ye~al--------~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~  513 (697)
                      +..+.|...|++++        ..+|.+...|...+..+...|++++|...+++++ ...|++...|..+.......+  
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g--  481 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA-ERVGWRWRLVWYRAVAELLTG--  481 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHT--
T ss_pred             cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCcchHHHHHHHHHHHHHcC--
Confidence            55789999999999        8889999999999999999999999999999999 789999999998888887776  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH
Q 005434          514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV  591 (697)
Q Consensus       514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~  591 (697)
                              +.+++.+.|++|++.-|..  ...|......+...+  +. ...|++++..-+.      ....+......+
T Consensus       482 --------~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~~a~~~lg~~~  544 (681)
T 2pzi_A          482 --------DYDSATKHFTEVLDTFPGE--LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VISAAFGLARAR  544 (681)
T ss_dssp             --------CHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hHHHHHHHHHHH
Confidence                    4789999999999877654  344444433333333  34 6677777754211      222233333445


Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN  626 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~  626 (697)
                      ...|++++|...|++++...|.....+...+....
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~  579 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL  579 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence            66788888888888888888777776666555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.32  E-value=1.7e-05  Score=89.20  Aligned_cols=161  Identities=10%  Similarity=-0.095  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..++|...|++++..+|.+...|...+..+...|++++|...+++++ ...|++...|.....+....+          
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g----------   71 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHPGHPEAVARLGRVRWTQQ----------   71 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTSTTCHHHHHHHHHHHHHTT----------
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------
Confidence            456789999999999999999999999999999999999999999999 889999999998888877766          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR  601 (697)
                      +.+++.+.|+++++..|..  ...|...+                                      ..+...|++++|.
T Consensus        72 ~~~~A~~~~~~al~~~p~~--~~~~~~la--------------------------------------~~~~~~g~~~~A~  111 (568)
T 2vsy_A           72 RHAEAAVLLQQASDAAPEH--PGIALWLG--------------------------------------HALEDAGQAEAAA  111 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTTC--HHHHHHHH--------------------------------------HHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCC--HHHHHHHH--------------------------------------HHHHHcCCHHHHH
Confidence            4788888999998876542  23332211                                      1123467888899


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHHHHHHHHhhCCCCchHHH
Q 005434          602 EMYKRFLALPRPGLVLYQNCIELENNL---ASVGDKDSLVNARKLFESALATYDQNTSLWR  659 (697)
Q Consensus       602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~---~~~~~~~~~~raR~lye~al~~~~~~~~lW~  659 (697)
                      +.|++++...|.....+...+.+...+   +      +.+.|...|++++...|.+...|.
T Consensus       112 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g------~~~~A~~~~~~al~~~p~~~~~~~  166 (568)
T 2vsy_A          112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWR------ALDVLSAQVRAAVAQGVGAVEPFA  166 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT------THHHHHHHHHHHHHHTCCCSCHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhccc------cHHHHHHHHHHHHhcCCcccChHH
Confidence            999999988888888777777777777   6      888999999999998886554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.31  E-value=4.4e-06  Score=96.22  Aligned_cols=167  Identities=9%  Similarity=-0.065  Sum_probs=135.1

Q ss_pred             hhhhHHHHHHHHHH--------hcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          307 QGLRVLQTIYSGAV--------EALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       307 ~~~~~a~~iy~~al--------~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                      .+.+.|...|++++        +..|++.+.+...-..+...+   ..+.+...++++++..|+++..|..++..+..  
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--  479 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGWRWRLVWYRAVAELL--  479 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
T ss_pred             cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--
Confidence            45688999999999        777888777776666554433   35788899999999999999999999998875  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 .++++.|...|+++++..|... .|.........                  .+..+. ...|++|+..
T Consensus       480 -----------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~------------------~g~~~~-~~~~~~al~~  529 (681)
T 2pzi_A          480 -----------TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL------------------AGNTDE-HKFYQTVWST  529 (681)
T ss_dssp             -----------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH------------------HTCCCT-TCHHHHHHHH
T ss_pred             -----------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCChHH-HHHHHHHHHh
Confidence                       5889999999999999988754 44444333332                  233456 7889999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (697)
                      +|.+...|...+..+...|++++|...+++++ ...|++...|.........
T Consensus       530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-
T ss_pred             CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999 7899999999877766543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.29  E-value=1.2e-05  Score=90.33  Aligned_cols=163  Identities=12%  Similarity=0.066  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l  219 (697)
                      ..+...|++++...|++...|...+..+...| +..+...|++++..+|+++..|...+.... ..|+.+.|...|++++
T Consensus         6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al   84 (568)
T 2vsy_A            6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQAS   84 (568)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999888877 578999999999999999999999999986 7999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (697)
Q Consensus       220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (697)
                      ...|++...|..+.......                                                            
T Consensus        85 ~~~p~~~~~~~~la~~~~~~------------------------------------------------------------  104 (568)
T 2vsy_A           85 DAAPEHPGIALWLGHALEDA------------------------------------------------------------  104 (568)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT------------------------------------------------------------
T ss_pred             hcCCCCHHHHHHHHHHHHHc------------------------------------------------------------
Confidence            99999888887666544321                                                            


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH
Q 005434          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA  371 (697)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a  371 (697)
                             ++.+.|...|+++++..|++...+..+...+.........+.+...++++++..|++...|..++
T Consensus       105 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          105 -------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             -------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence                   12356788888888888887777777666665541112356778888888888888766665544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.28  E-value=0.00012  Score=75.04  Aligned_cols=243  Identities=8%  Similarity=0.039  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch--HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHH
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS--QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD  422 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~--~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~  422 (697)
                      .+.+-...+.++...|+....|.........             .+  .++.+...++.++...|... +|..=-..+..
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-------------l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKN-------------LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------------CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-------------cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence            3567788889999999999999988776543             23  78999999999999988765 77643333321


Q ss_pred             HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhccCCCcHHHH
Q 005434          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--EARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~--~A~~l~~~al~~~~P~~~~lW  500 (697)
                      ...... .          .+..+.....+++++..+|.+...|..-.-++...|..+  ++.+.+++++ ...|.+...|
T Consensus       116 ~~~~l~-~----------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d~~N~sAW  183 (306)
T 3dra_A          116 IMELNN-N----------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTDLKNNSAW  183 (306)
T ss_dssp             HHHHTT-T----------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCTTCHHHH
T ss_pred             HHHhcc-c----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhCCCCHHHH
Confidence            110000 0          023578889999999999999999988887788888887  9999999999 7999999999


Q ss_pred             HHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCC
Q 005434          501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGG  577 (697)
Q Consensus       501 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~---~~~~~l~~~a~~~~~~~~~~  577 (697)
                      ..+..+....+..    .+....++..+.+.++|..-|..  ...|......+...+   +.+...+++++.   .....
T Consensus       184 ~~R~~ll~~l~~~----~~~~~~~eEl~~~~~aI~~~p~n--~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~---~~~~~  254 (306)
T 3dra_A          184 SHRFFLLFSKKHL----ATDNTIDEELNYVKDKIVKCPQN--PSTWNYLLGIHERFDRSITQLEEFSLQFVD---LEKDQ  254 (306)
T ss_dssp             HHHHHHHHSSGGG----CCHHHHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCCGGGGHHHHHTTEE---GGGTE
T ss_pred             HHHHHHHHhcccc----chhhhHHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHhcCCChHHHHHHHHHHHh---ccCCC
Confidence            9887776554320    00112566677788888877755  456864332222222   112222222221   00000


Q ss_pred             CCCCChHHHHHHHHHHhCCHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 005434          578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLA-LPRPGLVLYQNCI  622 (697)
Q Consensus       578 ~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~-~~p~~~~~~~~~i  622 (697)
                      ..........++.+.+.|+.++|.++|+.++. ..|....+|...+
T Consensus       255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            00111122223334456888888888888886 6777777777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.25  E-value=3e-05  Score=74.75  Aligned_cols=92  Identities=7%  Similarity=0.028  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434          141 ARILEIYRLAVMRFKGDIELWFK----------------YMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~----------------y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~  203 (697)
                      ..+...|++++...|++...|..                .+......| +..+...|++++..+|+++..|...+.... 
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-   99 (208)
T 3urz_A           21 GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-   99 (208)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence            34445555555555555555544                444433333 344555555555555555555555555543 


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          204 HNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      ..|+.+.|...|++++...|++...|....
T Consensus       100 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A          100 CRGQEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            445555555555555555555544444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.24  E-value=8.8e-05  Score=72.29  Aligned_cols=192  Identities=10%  Similarity=-0.040  Sum_probs=124.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      ++..+...+..+...|++++|...+++++ ..+|.+   ...|..........+          +.+++.+.|+++++..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~----------~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNA----------DLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHC
Confidence            34566666777788899999999999988 677765   356665555555555          4788888899988877


Q ss_pred             ChhhhH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHH
Q 005434          538 SALESE-SLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV  616 (697)
Q Consensus       538 p~~~~~-~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~  616 (697)
                      |..... ..|......+...+   ...+...                 ..........|+.++|...|++++...|.+..
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~---~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~  131 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALD---DSALQGF-----------------FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY  131 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH---C-------------------------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred             cCCCcHHHHHHHHHHHHHhhh---hhhhhhh-----------------hccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence            754321 11111110000000   0000000                 00011112356788999999999998887754


Q ss_pred             HHH-----------------HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHhcCChhhHHH
Q 005434          617 LYQ-----------------NCIELENNLASVGDKDSLVNARKLFESALATYDQNT---SLWRDYYSTETKLGTSETATA  676 (697)
Q Consensus       617 ~~~-----------------~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~---~lW~~y~~fE~~~G~~~~a~~  676 (697)
                      .+.                 ..+.+....+      +.+.|...|++++..+|.++   +.|...+..-...|+.+.|..
T Consensus       132 a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~  205 (225)
T 2yhc_A          132 TTDATKRLVFLKDRLAKYEYSVAEYYTERG------AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK  205 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence            331                 2233334455      88999999999999999664   678888888888999999999


Q ss_pred             HHHHHHhhcCCcc
Q 005434          677 VYWRARKTLKDST  689 (697)
Q Consensus       677 vy~ral~~~~~~~  689 (697)
                      .+.++...-|+++
T Consensus       206 ~~~~l~~~~~~~~  218 (225)
T 2yhc_A          206 VAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHCCSCCC
T ss_pred             HHHHHHhhCCCch
Confidence            9999988877764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.22  E-value=2.1e-05  Score=66.91  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|...+......+ +..+...|++++...|.++.+|...+.... ..|+.+.|...|+++
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            566788999999999999999999999888777 578999999999999999999999999885 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRME  236 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E  236 (697)
                      +...|++..+|..+..+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           99 LKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHhh
Confidence            999999998888776654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.22  E-value=0.00052  Score=72.02  Aligned_cols=263  Identities=10%  Similarity=-0.003  Sum_probs=167.4

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc--H----
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIF-DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT--E----  462 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw-~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~--~----  462 (697)
                      .++++.|...+++++...|...-+ ...+-.......             ...+..+.++..|++++...+..  +    
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL-------------HCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHH-------------HhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            477899999999999987754311 111111111110             02456788999999988753322  1    


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--------SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~--------P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      ......+..+...|++++|...+++++ ...        |.....+.....+....|          +.+++...+++++
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al  162 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAF-QLINEQHLEQLPMHEFLVRIRAQLLWAWA----------RLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCTTSTHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhccccCcHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHH
Confidence            224556778889999999999999988 322        222334443444444444          4789999999999


Q ss_pred             hhcChh---hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHH-----HHHHHHHhCCHHHHHHHH
Q 005434          535 TKVSAL---ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA-----IINLVIQKDGIQQAREMY  604 (697)
Q Consensus       535 ~~~p~~---~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~-----yl~~~~~~~~~~~AR~iy  604 (697)
                      ...+..   .....+..........+  +.+...+++++.......    ....+..     .+......|++++|+..+
T Consensus       163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          163 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK----YHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----cchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            865431   12233333333333333  567788888876543221    1112222     122245789999999999


Q ss_pred             HHHHhCCCCC----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC-C-----chHHHHHHHHHHhcCChhhH
Q 005434          605 KRFLALPRPG----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-N-----TSLWRDYYSTETKLGTSETA  674 (697)
Q Consensus       605 ~~~i~~~p~~----~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~-~-----~~lW~~y~~fE~~~G~~~~a  674 (697)
                      ++++...|..    ...+...+.+....+      +.+.|..+++.++...+. .     ..++..........|+.+.|
T Consensus       239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  312 (373)
T 1hz4_A          239 RHTAKPEFANNHFLQGQWRNIARAQILLG------EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA  312 (373)
T ss_dssp             HHSCCCCCTTCGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhCCCCCCCcchhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence            9999865532    123455566666777      889999999999887552 1     14666677777888999999


Q ss_pred             HHHHHHHHhhcC
Q 005434          675 TAVYWRARKTLK  686 (697)
Q Consensus       675 ~~vy~ral~~~~  686 (697)
                      ...+.+|+...+
T Consensus       313 ~~~l~~al~~~~  324 (373)
T 1hz4_A          313 QRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.22  E-value=2.9e-06  Score=77.65  Aligned_cols=91  Identities=5%  Similarity=-0.141  Sum_probs=80.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      ..|++++...|++...|......+...| +..+...|++++..+|.++..|...+.... ..|+++.|...|+++++..|
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCC
Confidence            3566788889999999999988888777 678999999999999999999999998885 79999999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 005434          224 TSEELWVEYLRME  236 (697)
Q Consensus       224 ~~~~lW~~y~~~E  236 (697)
                      +++..|.......
T Consensus       102 ~~~~~~~~lg~~~  114 (151)
T 3gyz_A          102 NDYTPVFHTGQCQ  114 (151)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9988887766544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.21  E-value=0.0011  Score=68.39  Aligned_cols=250  Identities=13%  Similarity=0.106  Sum_probs=166.8

Q ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHH
Q 005434          174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN----------VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL  243 (697)
Q Consensus       174 ~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~----------~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~  243 (697)
                      .++..+++.+|..+|.+..+|..-..... ..+.          ++.+..+++.++..+|.+..+|..-..+...     
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~-~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-----  120 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-----  120 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHH-HhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-----
Confidence            47999999999999999999987766553 3333          6789999999999999999999765433211     


Q ss_pred             HHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcC
Q 005434          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL  323 (697)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~  323 (697)
                            ++.                                                      ..++.+..+++++++..
T Consensus       121 ------l~~------------------------------------------------------~~~~~EL~~~~k~l~~d  140 (331)
T 3dss_A          121 ------LPE------------------------------------------------------PNWARELELCARFLEAD  140 (331)
T ss_dssp             ------CSS------------------------------------------------------CCHHHHHHHHHHHHHHC
T ss_pred             ------cCc------------------------------------------------------ccHHHHHHHHHHHHHhC
Confidence                  110                                                      01235677899999999


Q ss_pred             CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCC-CCCCcCccchHHHHHHHHHHH
Q 005434          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK-DGTSEDIVPSQMQKAIQVYEE  402 (697)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~-~~~~~~~~~~~~~~a~~vye~  402 (697)
                      |.++..|..-.-++..++.  ..+.+-..++++++.+|.+...|...+.......... .+.......+.++.+.+.+.+
T Consensus       141 prNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~  218 (331)
T 3dss_A          141 ERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN  218 (331)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence            9998888665555555542  1345667788999999999999988766543211000 000000113678999999999


Q ss_pred             HhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----hcC
Q 005434          403 ALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL-----QLG  476 (697)
Q Consensus       403 al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~-----~~~  476 (697)
                      ++...|... .|. |..+.........      .......+.++++...++++++..|.+  .|+...-.+.     ..|
T Consensus       219 ai~~~P~d~SaW~-Y~r~ll~~~~~~~------~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~  289 (331)
T 3dss_A          219 AFFTDPNDQSAWF-YHRWLLGAGSGRC------ELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLL  289 (331)
T ss_dssp             HHHHSTTCHHHHH-HHHHHHHSSSCGG------GCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTT
T ss_pred             HHHhCCCCHHHHH-HHHHHHHhccCcc------ccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccc
Confidence            999999876 787 5666554221000      000112367889999999999999987  5653322211     245


Q ss_pred             CHHHHHHHHHHHhhccCCCcHHHHH
Q 005434          477 KLDEARKLAAKLCSGKLSDSVQLWL  501 (697)
Q Consensus       477 ~~~~A~~l~~~al~~~~P~~~~lW~  501 (697)
                      ..++++..+.+.+ ...|--..-|.
T Consensus       290 ~~~~~~~~l~~l~-~~Dp~r~~~y~  313 (331)
T 3dss_A          290 YEKETLQYFSTLK-AVDPMRAAYLD  313 (331)
T ss_dssp             THHHHHHHHHHHH-HHCGGGHHHHH
T ss_pred             cHHHHHHHHHHHH-HhCcchhhHHH
Confidence            6677777788777 56676555554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.20  E-value=4.7e-05  Score=66.10  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=96.8

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      .++++.|..+|+++++..|... .|.........                  .+..+.+...|++++..+|.++..|...
T Consensus        14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A           14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK------------------QGDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH------------------hcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4778999999999998776543 44333333222                  3457899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      +..+...|++++|..++++++ ...|.+...|.....+....+          +.+.+.+.|.+++...|
T Consensus        76 ~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           76 GNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQG----------DYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhcCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHc----------cHHHHHHHHHHHHccCC
Confidence            999999999999999999999 788988899988887776655          47888888999887554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.20  E-value=1.1e-05  Score=73.35  Aligned_cols=90  Identities=7%  Similarity=-0.139  Sum_probs=79.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      ..|++++...|++...|...+......| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence            3678899999999999999998888877 578999999999999999999999999885 79999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 005434          224 TSEELWVEYLRM  235 (697)
Q Consensus       224 ~~~~lW~~y~~~  235 (697)
                      +++..|......
T Consensus        87 ~~~~~~~~lg~~   98 (148)
T 2vgx_A           87 XEPRFPFHAAEC   98 (148)
T ss_dssp             TCTHHHHHHHHH
T ss_pred             CCchHHHHHHHH
Confidence            988887665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.20  E-value=2.7e-05  Score=75.03  Aligned_cols=150  Identities=8%  Similarity=-0.006  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHR----------------YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~----------------y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                      +..+.|...|++++..+|.++..|..                .+..+...|++++|...+++++ ...|++...|.....
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~   96 (208)
T 3urz_A           18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-QKAPNNVDCLEACAE   96 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHH
Confidence            56889999999999999999999988                9999999999999999999999 799999999999988


Q ss_pred             HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHhhhhCCCCCCCC
Q 005434          506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK----HYFDKLVEIALISVAKDGGGESGF  581 (697)
Q Consensus       506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~----~~~~~l~~~a~~~~~~~~~~~~~~  581 (697)
                      +....|          +.+.+.+.|++++..-|..  ...|......+...+    ..+...|++++.     .    .+
T Consensus        97 ~~~~~g----------~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----~----~~  155 (208)
T 3urz_A           97 MQVCRG----------QEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSS-----P----TK  155 (208)
T ss_dssp             HHHHHT----------CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----C----CH
T ss_pred             HHHHcC----------CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----C----Cc
Confidence            888776          4789999999999877643  455554443332222    122333333221     0    11


Q ss_pred             ChHHHH-HHH-HHHhCCHHHHHHHHHHHHhCCCC
Q 005434          582 SLPSAI-INL-VIQKDGIQQAREMYKRFLALPRP  613 (697)
Q Consensus       582 ~l~~~y-l~~-~~~~~~~~~AR~iy~~~i~~~p~  613 (697)
                      .-+..| ... ....|++++|...|++++...|.
T Consensus       156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            111111 111 23468899999999999998875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.19  E-value=6.1e-06  Score=75.46  Aligned_cols=124  Identities=5%  Similarity=0.008  Sum_probs=98.7

Q ss_pred             HHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHH
Q 005434           70 EISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRL  149 (697)
Q Consensus        70 Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyer  149 (697)
                      .|.++++....+...|..+|.+...|.....--..+                                .-...+...|++
T Consensus        14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~--------------------------------g~~~eA~~~~~~   61 (151)
T 3gyz_A           14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNK--------------------------------GRIEEAEVFFRF   61 (151)
T ss_dssp             HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHc--------------------------------CCHHHHHHHHHH
Confidence            345566666667777777766665554333211100                                115677899999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434          150 AVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (697)
Q Consensus       150 al~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~  226 (697)
                      ++...|++...|......+...| +..+...|++++..+|+++..|...+.... ..|+.+.|...|++++...|+++
T Consensus        62 al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999888877 679999999999999999999999999886 89999999999999999999853

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.18  E-value=0.00098  Score=72.46  Aligned_cols=319  Identities=10%  Similarity=-0.011  Sum_probs=172.2

Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (697)
Q Consensus       308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~  387 (697)
                      +.+.|...|++|++.-+.  .....+-.++...........+...+.....  +.++..+..++..+.....        
T Consensus        89 ~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~--------  156 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGT--------  156 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTC--------
T ss_pred             CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC--------
Confidence            345677788888774322  2333343444332211111122222222222  2335666777777654311        


Q ss_pred             ccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434          388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (697)
Q Consensus       388 ~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~  467 (697)
                       .....+.+..+++.+....|...  ...........               ...+.+++...|++|...++.....+..
T Consensus       157 -~~~~~~~a~~~~~~a~~~~~~a~--~~Lg~~~~~~g---------------~~~~~~~A~~~~~~aa~~g~~~a~~~~~  218 (452)
T 3e4b_A          157 -YDQHLDDVERICKAALNTTDICY--VELATVYQKKQ---------------QPEQQAELLKQMEAGVSRGTVTAQRVDS  218 (452)
T ss_dssp             -GGGGHHHHHHHHHHHTTTCTTHH--HHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             -cccCHHHHHHHHHHHHcCCHHHH--HHHHHHHHHcC---------------CcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence             23456667777777776666521  11111111110               1346788889999999888888887777


Q ss_pred             HHHHHHhc----CCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhH
Q 005434          468 YVTLYLQL----GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESE  543 (697)
Q Consensus       468 y~~l~~~~----~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~  543 (697)
                      .+.++...    +++++|...++++.    |.+...+.....+......       ..+.+++.+.|++|+..-.+.  .
T Consensus       219 Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~-------~~d~~~A~~~~~~Aa~~g~~~--A  285 (452)
T 3e4b_A          219 VARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPE-------LGDVEQMMKYLDNGRAADQPR--A  285 (452)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGG-------GCCHHHHHHHHHHHHHTTCHH--H
T ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHCCCHH--H
Confidence            77777554    68889999998876    5555666655554221111       015788888888887643322  1


Q ss_pred             HHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCC
Q 005434          544 SLWLMALKFFMN-----QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD-----GIQQAREMYKRFLALPRP  613 (697)
Q Consensus       544 ~lW~~y~~~~~~-----~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~-----~~~~AR~iy~~~i~~~p~  613 (697)
                      ...+-. -|...     ..+.+...|++|.    +.     .. .....+-.+...|     +.++|...|+++.....+
T Consensus       286 ~~~Lg~-~y~~G~g~~~d~~~A~~~~~~Aa----~g-----~~-~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  354 (452)
T 3e4b_A          286 ELLLGK-LYYEGKWVPADAKAAEAHFEKAV----GR-----EV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN  354 (452)
T ss_dssp             HHHHHH-HHHHCSSSCCCHHHHHHHHHTTT----TT-----CH-HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHH-HHHcCCCCCCCHHHHHHHHHHHh----CC-----CH-HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence            111111 12222     1134556666654    11     11 1112222333333     899999999999987666


Q ss_pred             CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434          614 GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKT  684 (697)
Q Consensus       614 ~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~  684 (697)
                      ...+.+..+... ..+   ...+.++|...|++|...........+.-+.-...-++...+..+..+..+.
T Consensus       355 ~A~~~Lg~~y~~-G~g---~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          355 SADFAIAQLFSQ-GKG---TKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             THHHHHHHHHHS-CTT---BCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            666656655432 222   2338899999999999764332333333332222234555666666655444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.13  E-value=1.9e-05  Score=69.51  Aligned_cols=86  Identities=6%  Similarity=-0.128  Sum_probs=71.9

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH
Q 005434          150 AVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL  228 (697)
Q Consensus       150 al~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l  228 (697)
                      +....|...+.|..-.....+.| +..+...|++++..+|.++.+|...+.... ..|+.+.|...|+++++..|++...
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34456777777877777777766 678999999999999999999999999886 7999999999999999999999888


Q ss_pred             HHHHHHHH
Q 005434          229 WVEYLRME  236 (697)
Q Consensus       229 W~~y~~~E  236 (697)
                      |.......
T Consensus        84 ~~~lg~~~   91 (126)
T 4gco_A           84 YIRKAACL   91 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.12  E-value=8.4e-06  Score=73.31  Aligned_cols=91  Identities=7%  Similarity=-0.133  Sum_probs=76.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      ..|++++...|++...|...+..+...| +..+...|++++..+|.++.+|...+.... ..|+.+.|...|++++...|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence            4677788888999999998888877777 578999999999999999999999999885 79999999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 005434          224 TSEELWVEYLRME  236 (697)
Q Consensus       224 ~~~~lW~~y~~~E  236 (697)
                      +++.+|.......
T Consensus        84 ~~~~~~~~lg~~~   96 (142)
T 2xcb_A           84 NEPRFPFHAAECH   96 (142)
T ss_dssp             TCTHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9888876665443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.12  E-value=0.00013  Score=77.13  Aligned_cols=228  Identities=11%  Similarity=0.022  Sum_probs=143.7

Q ss_pred             HhHHHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC----c---HHHHHHHHHHH
Q 005434          441 EHYISHLLTVYEKAEAM---GCL---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD----S---VQLWLLRISVE  507 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~---~~~---~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~----~---~~lW~~~i~l~  507 (697)
                      .+..+.|...|++|+..   .+.   ...++...+..+...|++++|...+.+|+ ..++.    .   ...+.......
T Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY-EIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHHH
Confidence            35689999999999885   222   35678888999999999999999999998 44332    1   22333333333


Q ss_pred             HHhcccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCC
Q 005434          508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGF  581 (697)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~  581 (697)
                      ...+          +.+++.+.|++|+...+...    ....+......+...+  +.+...|++++........   .+
T Consensus       195 ~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~  261 (383)
T 3ulq_A          195 LDLK----------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---LP  261 (383)
T ss_dssp             HHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---GG
T ss_pred             HHhc----------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc---ch
Confidence            3334          47889999999997654321    1123332232233333  5778888888876544321   13


Q ss_pred             ChHHHHH---HHHHHhCCHHHHHHHHHHHHhCCCC--CHH---HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434          582 SLPSAII---NLVIQKDGIQQAREMYKRFLALPRP--GLV---LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (697)
Q Consensus       582 ~l~~~yl---~~~~~~~~~~~AR~iy~~~i~~~p~--~~~---~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~  653 (697)
                      .....+.   ......|++++|...|++++...+.  +..   .+.....+....+.   ...++++..+++++ ...+.
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~al~~~~~~-~~~~~  337 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD---EEAIQGFFDFLESK-MLYAD  337 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC---HHHHHHHHHHHHHT-TCHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHC-cCHHH
Confidence            3333332   3355789999999999999986422  111   22233334444440   01256666666655 11112


Q ss_pred             CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          654 NTSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       654 ~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ...++...+..-...|+.+.|...|.+|+....
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            346777888888899999999999999988654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.10  E-value=0.00023  Score=69.28  Aligned_cols=188  Identities=14%  Similarity=0.055  Sum_probs=120.2

Q ss_pred             hhhhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChh---hHHHHHHhhc
Q 005434          302 DLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKM  375 (697)
Q Consensus       302 ~~~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~---~w~~~a~~~l  375 (697)
                      ..+..++++.|...|+++++..|.+.   +.+..+-..+..-   .....+...++++++.+|+++.   .+..++..+.
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence            34455578899999999999888753   3344433333322   2467888999999999999865   5666666543


Q ss_pred             ccCCCC----CCCC-cCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHH--HHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434          376 TDSVSK----DGTS-EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKF--LMDMIAPKKEETRDSELPSHVEHYISHL  447 (697)
Q Consensus       376 ~~~~~~----~~~~-~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a  447 (697)
                      ......    .... .....+..++|...|+++++..|... .+......  ....+....-..+   ..-...+..+.|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a---~~~~~~~~~~~A  166 (225)
T 2yhc_A           90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA---EYYTERGAWVAV  166 (225)
T ss_dssp             HHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCHHHH
T ss_pred             hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCcHHHH
Confidence            210000    0000 00114789999999999999998764 34332211  1000000000000   000123567899


Q ss_pred             HHHHHHHHHcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          448 LTVYEKAEAMGCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       448 r~~ye~al~~~~~~~---~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                      ...|++++...|.++   +.+...+..+...|+.++|.+.++++. ...|++
T Consensus       167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~-~~~~~~  217 (225)
T 2yhc_A          167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA-ANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCCSCC
T ss_pred             HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCc
Confidence            999999999988875   678889999999999999999999888 677765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.09  E-value=3.6e-05  Score=67.15  Aligned_cols=96  Identities=10%  Similarity=0.024  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++..+|...+......| +..+...|++++..+|+++..|...+.... ..|+.+.|...|+++
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-AVKEYASALETLDAA   98 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhCHHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999999986 799999999999999


Q ss_pred             hhhC------CCCHHHHHHHHHHH
Q 005434          219 LRVC------PTSEELWVEYLRME  236 (697)
Q Consensus       219 l~~~------p~~~~lW~~y~~~E  236 (697)
                      ++..      |.+..++....+..
T Consensus        99 l~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           99 RTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHhCcccCCchhHHHHHHHHHHHH
Confidence            9999      88777777665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.08  E-value=5.9e-05  Score=65.28  Aligned_cols=97  Identities=11%  Similarity=0.011  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|...+..+...+ ...+...|++++...|.++..|...+.... ..|+.+.|...|+++
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKA  106 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            456788999999999999999999999888777 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRMEL  237 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~  237 (697)
                      +...|.+..+|..+..+..
T Consensus       107 ~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A          107 LELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHH
T ss_pred             HhcCccchHHHHHHHHHHH
Confidence            9999999888877776554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.08  E-value=0.00013  Score=74.06  Aligned_cols=80  Identities=10%  Similarity=-0.095  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      |.+...|...+......| +..+...|++++..+|+++.+|...+.... ..|+++.|...++++++..|++..+|....
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            566777888887777776 578999999999999999999999998886 789999999999999999998877776555


Q ss_pred             HH
Q 005434          234 RM  235 (697)
Q Consensus       234 ~~  235 (697)
                      ..
T Consensus        80 ~~   81 (281)
T 2c2l_A           80 QC   81 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.08  E-value=3.6e-05  Score=73.37  Aligned_cols=134  Identities=11%  Similarity=0.190  Sum_probs=99.4

Q ss_pred             HHHHHhhHHHHHHHhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHH
Q 005434           72 SEIVKQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYR  148 (697)
Q Consensus        72 ~~i~~kR~~fE~~l~r---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iye  148 (697)
                      ..+.+.|..||..|..   ...-+..|++||.|=.+-.                        . +.  ......+..+++
T Consensus        49 ~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~y------------------------P-~g--~~~~s~L~~lLE  101 (223)
T 4aez_C           49 AGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNF------------------------P-QG--ETKTSGLVTLLE  101 (223)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHC------------------------T-TC--CCTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhC------------------------c-CC--CcchhhHHHHHH
Confidence            3456789999999985   2455899999999953210                        0 00  001223557999


Q ss_pred             HHHHhcCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          149 LAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       149 ral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ||++.|.++         +++|+.|+++|     .....+|.-+...  .-....+|+.+|.+. +..|++..|..||++
T Consensus       102 rc~~~F~~~~rYknD~RyLklWl~Ya~~~-----~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~  175 (223)
T 4aez_C          102 RCTREFVRNPLYKDDVRYLRIWMQYVNYI-----DEPVELFSFLAHHHIGQESSIFYEEYANYF-ESRGLFQKADEVYQK  175 (223)
T ss_dssp             HHHHHTTTCGGGTTCHHHHHHHHHHHTTC-----SCHHHHHHHHHHTTCSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred             HHHHHhcccccccCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHCCcchhHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence            999997766         58999999975     3566788877764  345789999999998 689999999999999


Q ss_pred             hhhhCCCC-HHHHHHHHHHHHH
Q 005434          218 GLRVCPTS-EELWVEYLRMELT  238 (697)
Q Consensus       218 ~l~~~p~~-~~lW~~y~~~E~~  238 (697)
                      |++.+..- ..|-..|-.|+.+
T Consensus       176 Gi~~~A~P~~rL~~~~~~F~~R  197 (223)
T 4aez_C          176 GKRMKAKPFLRFQQKYQQFTHR  197 (223)
T ss_dssp             HHHHTCBSHHHHHHHHHHHHHH
T ss_pred             HHHcCCccHHHHHHHHHHHHHH
Confidence            99998542 4677777777654

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=98.08  E-value=5.7e-05  Score=70.79  Aligned_cols=140  Identities=13%  Similarity=0.144  Sum_probs=100.1

Q ss_pred             HHHHHhhHHHHHHHhC---CC-CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHH-HH
Q 005434           72 SEIVKQRRKFEYRLKR---PS-PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARIL-EI  146 (697)
Q Consensus        72 ~~i~~kR~~fE~~l~r---~~-~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~i  146 (697)
                      .++-..|..||..|..   .. .-+..|++||.|=.+..                 +.|         .......+. .+
T Consensus         6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y-----------------P~g---------~~~~~s~L~~~l   59 (202)
T 3esl_A            6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY-----------------IEV---------DSESGQEVLRST   59 (202)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH-----------------HHH---------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC-----------------CCC---------CCcchhchHHHH
Confidence            5667889999999998   33 33689999999943221                 000         000123455 89


Q ss_pred             HHHHHHhcCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434          147 YRLAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (697)
Q Consensus       147 yeral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~  215 (697)
                      +|||++.|-++         +++|+.|++++..........+|.-+...  --..+.+|+.+|.+. +..|++..|..+|
T Consensus        60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy  138 (202)
T 3esl_A           60 MERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLL-ENAQFFLEAKVLL  138 (202)
T ss_dssp             HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence            99999976544         47999999996211122567788877664  345789999999998 6899999999999


Q ss_pred             HHhhhhCCCC-HHHHHHHHHHHHH
Q 005434          216 QNGLRVCPTS-EELWVEYLRMELT  238 (697)
Q Consensus       216 ~r~l~~~p~~-~~lW~~y~~~E~~  238 (697)
                      ++|++.+..- ..|-..|-.|+.+
T Consensus       139 ~~GI~~~A~P~~rL~~~~~~F~~R  162 (202)
T 3esl_A          139 ELGAENNCRPYNRLLRSLSNYEDR  162 (202)
T ss_dssp             HHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCccHHHHHHHHHHHHHH
Confidence            9999998542 4677777777654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.07  E-value=0.00012  Score=74.50  Aligned_cols=238  Identities=8%  Similarity=-0.016  Sum_probs=143.6

Q ss_pred             HHHHHHHHHhhcCCch-hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005434          395 KAIQVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL  473 (697)
Q Consensus       395 ~a~~vye~al~~~~~~-~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~  473 (697)
                      +|..++++|-+.++++ ..| .|...       +  .          .+..+.|...|++|.              .++.
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-~~~~~-------~--~----------~~~~~~A~~~~~~a~--------------~~~~   48 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-KLFSG-------S--D----------SYKFEEAADLCVQAA--------------TIYR   48 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-HHHSC-------C--S----------HHHHHHHHHHHHHHH--------------HHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-hhcCC-------C--C----------CccHHHHHHHHHHHH--------------HHHH
Confidence            3667788888888764 355 33210       0  0          134677888888873              3566


Q ss_pred             hcCCHHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh----hH
Q 005434          474 QLGKLDEARKLAAKLCSGKLSD------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SE  543 (697)
Q Consensus       474 ~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~  543 (697)
                      ..|++++|...+.+|+ ...+.      ....|.....+....|          +.+++...|++|+...+...    ..
T Consensus        49 ~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g----------~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGG----------NSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7899999999999988 43221      2445555555555554          47888888999987553211    23


Q ss_pred             HHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHH----
Q 005434          544 SLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV----  616 (697)
Q Consensus       544 ~lW~~y~~~~~~~-~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~----  616 (697)
                      ..|......+... +  +.+...|++|+...+..........+...........|++++|...|++++...|....    
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            3454444444442 3  67788899998876543210000111223344566789999999999999998775432    


Q ss_pred             ---HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCch-----HHHHHHH-HHH-hcCChhhHHHHHHHHHh
Q 005434          617 ---LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS-----LWRDYYS-TET-KLGTSETATAVYWRARK  683 (697)
Q Consensus       617 ---~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~-----lW~~y~~-fE~-~~G~~~~a~~vy~ral~  683 (697)
                         .+.........++      +.+.|...|++++...|....     ++..... ++. ..|+.+.|...|.++++
T Consensus       198 ~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAAT------DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHHHHHHHTT------CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence               4555555566677      899999999999998884332     2322222 221 34666677776665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.07  E-value=6.1e-05  Score=70.04  Aligned_cols=96  Identities=9%  Similarity=0.066  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcCCH--HHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW-EFDHNLNV--TAARALM  215 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~-e~~~~~~~--~~aR~~~  215 (697)
                      ...+...|++++...|.+...|...+..+...| +..+...|++++...|.++.+|..++.. .. ..|+.  +.|...|
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAMI  104 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHHH
Confidence            344567899999999999999999999988877 5789999999999999999999999988 54 67888  9999999


Q ss_pred             HHhhhhCCCCHHHHHHHHHHH
Q 005434          216 QNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       216 ~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ++++...|.+..+|...+...
T Consensus       105 ~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A          105 DKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHH
Confidence            999999999888887766544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.05  E-value=3e-05  Score=69.58  Aligned_cols=93  Identities=8%  Similarity=-0.066  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|......+...| +..+...|++++...|+++..|...+.... ..|+.+.|...|+++
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL-QLGDLDGAESGFYSA  112 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            567788999999999999999999999888877 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYL  233 (697)
Q Consensus       219 l~~~p~~~~lW~~y~  233 (697)
                      +...|.++..+....
T Consensus       113 l~~~p~~~~~~~~~~  127 (142)
T 2xcb_A          113 RALAAAQPAHEALAA  127 (142)
T ss_dssp             HHHHHTCGGGHHHHH
T ss_pred             HHhCCCCcchHHHHH
Confidence            999998776654433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.04  E-value=0.0012  Score=68.61  Aligned_cols=259  Identities=12%  Similarity=0.100  Sum_probs=157.8

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG  251 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~  251 (697)
                      ..++..+++++|..+|.+..+|..-..... ..+ .++.+...++.+|..+|++..+|..-..+....          .+
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l----------~~  138 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI----------SP  138 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH----------CC
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----------cC
Confidence            357888999999999999999988777664 566 589999999999999999988887654332110          00


Q ss_pred             cccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHH
Q 005434          252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ  331 (697)
Q Consensus       252 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~  331 (697)
                      .                                                       ..+.+...++++++..|.+...|.
T Consensus       139 ~-------------------------------------------------------~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A          139 Q-------------------------------------------------------DPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             S-------------------------------------------------------CCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             C-------------------------------------------------------ChHHHHHHHHHHHHhCCCCHHHHH
Confidence            0                                                       012445677888888888877775


Q ss_pred             HHHHHHHHccccC-----cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc
Q 005434          332 RFFEIVEATNLAQ-----SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN  406 (697)
Q Consensus       332 ~~~~~~~~fe~~~-----~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~  406 (697)
                      .-.-++..++...     ....+-..++++++..|.+...|.............      ......++.+.+.+++++..
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~------~~~~~~~~eELe~~~~aI~~  237 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA------ETSSRSLQDELIYILKSIHL  237 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHHHHHHh
Confidence            5444444433211     012455567889999999999998877665321100      00124578899999999999


Q ss_pred             CCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHH-HHHHHHHHHH---c------CCCcHHHHHHHHHHHHhc
Q 005434          407 VPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISH-LLTVYEKAEA---M------GCLTEDIAHRYVTLYLQL  475 (697)
Q Consensus       407 ~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ar~~ye~al~---~------~~~~~~lw~~y~~l~~~~  475 (697)
                      .|... .|. |..+..........+ .+..+.-.....++- .-.+-+.|+.   .      ++.++-.+.-.++++...
T Consensus       238 ~P~n~SaW~-Ylr~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  315 (349)
T 3q7a_A          238 IPHNVSAWN-YLRGFLKHFSLPLVP-ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ  315 (349)
T ss_dssp             CTTCHHHHH-HHHHHHHHTTCCSGG-GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHH-HHHHHHHhcCCCccc-ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc
Confidence            99876 887 555544432111000 000000000000000 0011111211   1      145666777778888888


Q ss_pred             CCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          476 GKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       476 ~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                      |+.++|.++++.......|--...|.-++.
T Consensus       316 ~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          316 NRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            999999999988764566767778876554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.04  E-value=0.00017  Score=71.73  Aligned_cols=191  Identities=11%  Similarity=-0.045  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCCcHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAM--------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRIS  505 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~--------~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i~  505 (697)
                      +..+.|...|++++..        +|.....|...+..+...|++++|...+.+++ ..        .|.....|.....
T Consensus        57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHH
Confidence            5578888888888865        34456788899999999999999999999998 43        2555666666666


Q ss_pred             HHHHhcccCCCCCCccchHHHHHHHHHHHhhc-------ChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCC
Q 005434          506 VEIRCVTRNSFSPSKADILSIFELLKCILTKV-------SALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGG  576 (697)
Q Consensus       506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~-------p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~  576 (697)
                      +....+          +.+++.+.|++++...       ++ .....|...+..+...+  +.+...|++++........
T Consensus       136 ~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  204 (283)
T 3edt_B          136 LCQNQG----------KAEEVEYYYRRALEIYATRLGPDDP-NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF  204 (283)
T ss_dssp             HHHTTT----------CHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHcC----------CHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            665555          4788999999998752       11 12344444444444333  5677888888875432110


Q ss_pred             ---CCCCCChHHHHHHHHHH------hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434          577 ---GESGFSLPSAIINLVIQ------KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA  647 (697)
Q Consensus       577 ---~~~~~~l~~~yl~~~~~------~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a  647 (697)
                         ......++.........      ...+..+...++.+....|.....+...+.+....|      +.+.|..+|+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a  278 (283)
T 3edt_B          205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG------KLEAAHTLEDCA  278 (283)
T ss_dssp             SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence               01122222222222211      122344444444444334444456777777777888      899999999999


Q ss_pred             Hhh
Q 005434          648 LAT  650 (697)
Q Consensus       648 l~~  650 (697)
                      +..
T Consensus       279 l~~  281 (283)
T 3edt_B          279 SRN  281 (283)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.02  E-value=4.3e-05  Score=69.37  Aligned_cols=90  Identities=7%  Similarity=-0.061  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|......+...| +..+...|++++...|+++..|...+.... ..|+.+.|...|+++
T Consensus        37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL-QXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            566788999999999999999999999888877 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHH
Q 005434          219 LRVCPTSEELWV  230 (697)
Q Consensus       219 l~~~p~~~~lW~  230 (697)
                      +...|+++..+.
T Consensus       116 l~~~p~~~~~~~  127 (148)
T 2vgx_A          116 QELIANXPEFXE  127 (148)
T ss_dssp             HHHHTTCGGGHH
T ss_pred             HHHCcCCCcchH
Confidence            999998776543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.02  E-value=1.9e-05  Score=69.03  Aligned_cols=86  Identities=19%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|..........| ...+...|++++...|+++..|...+.... ..|+.+.|...|+++
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            456778999999999999999999998888777 568999999999999999999999988885 789999999999999


Q ss_pred             hhhCCCCH
Q 005434          219 LRVCPTSE  226 (697)
Q Consensus       219 l~~~p~~~  226 (697)
                      ++..|...
T Consensus       112 l~~~P~~~  119 (121)
T 1hxi_A          112 LLSQPQYE  119 (121)
T ss_dssp             HC------
T ss_pred             HHhCcCCC
Confidence            99999754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.02  E-value=0.00026  Score=61.20  Aligned_cols=118  Identities=15%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434          558 HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL  637 (697)
Q Consensus       558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~  637 (697)
                      +.+..+|++++...+.      ....+..........|+++.|..+|++++...|.....+...+.+....+      +.
T Consensus        18 ~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~   85 (136)
T 2fo7_A           18 DEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG------DY   85 (136)
T ss_dssp             HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CH
T ss_pred             HHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc------CH
Confidence            4566777777653211      22223333444567899999999999999998888888888888877777      89


Q ss_pred             HHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          638 VNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       638 ~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      +.|..+|++++...|.++.+|...+......|+.+.|...+.+++..-|+
T Consensus        86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999998888899999999999999999999999999876554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.00  E-value=9.8e-05  Score=63.21  Aligned_cols=96  Identities=13%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|..++..+...+ +..+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence            456778999999999999999999999888777 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRME  236 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E  236 (697)
                      +...|.+..++.......
T Consensus       104 ~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A          104 LELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHCTTCHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHH
Confidence            999999888776665443

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=97.99  E-value=8.2e-05  Score=67.72  Aligned_cols=130  Identities=18%  Similarity=0.250  Sum_probs=95.7

Q ss_pred             hhHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhc
Q 005434           77 QRRKFEYRLKRP--SPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRF  154 (697)
Q Consensus        77 kR~~fE~~l~r~--~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~  154 (697)
                      .|..||..|...  ..-+..|++||.|=.+-.                        . +.   .....+..+++||++.|
T Consensus         2 ~r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~------------------------p-~~---~~~s~L~~lLErc~~~f   53 (164)
T 2wvi_A            2 QKRAFEYEIRFYTGNDPLDVWDRYISWTEQNY------------------------P-QG---GKESNMSTLLERAVEAL   53 (164)
T ss_dssp             CTHHHHHHCCCCCSSCTHHHHHHHHHHHHHHC------------------------C-C-------CCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhcCCCCChHHHHHHHHHHHHHC------------------------c-CC---CccchHHHHHHHHHHHh
Confidence            478899999742  233789999999943210                        0 00   01123557999999997


Q ss_pred             CCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434          155 KGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (697)
Q Consensus       155 p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p  223 (697)
                      .++         +++|+.|+++|     .....+|.-+...  .-..+.+|+.+|.+. +..|++..|..||++|+..+.
T Consensus        54 ~~~~~YknD~RyLklWl~ya~~~-----~~p~~if~~L~~~~IG~~~AlfY~~wA~~l-E~~~~~~~A~~Iy~~Gi~~~A  127 (164)
T 2wvi_A           54 QGEKRYYSDPRFLNLWLKLGRLC-----NEPLDMYSYLHNQGIGVSLAQFYISWAEEY-EARENFRKADAIFQEGIQQKA  127 (164)
T ss_dssp             TTCGGGTTCHHHHHHHHHHHHHC-----SCHHHHHHHHHHTTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC
Confidence            654         57999999986     2356778777664  345789999999998 689999999999999999985


Q ss_pred             C-CHHHHHHHHHHHHHHH
Q 005434          224 T-SEELWVEYLRMELTYL  240 (697)
Q Consensus       224 ~-~~~lW~~y~~~E~~~~  240 (697)
                      . ...|-..|-.|+.+..
T Consensus       128 ~P~~~L~~~~~~F~~R~~  145 (164)
T 2wvi_A          128 EPLERLQSQHRQFQARVS  145 (164)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            4 2478888888887643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.99  E-value=4e-05  Score=66.85  Aligned_cols=97  Identities=18%  Similarity=0.093  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.+...|...+......+ ...+...|++++...|.++.+|...+.... ..|+++.|...|+++
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKA  110 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            356778999999999999999999998877766 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRMEL  237 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~  237 (697)
                      +...|.+..+|..+..+..
T Consensus       111 ~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A          111 LDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHCGGGTHHHHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHH
Confidence            9999988888877766554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.99  E-value=4.7e-05  Score=67.17  Aligned_cols=98  Identities=6%  Similarity=-0.021  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|...+..+...+ +..+...|++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            567788999999999999999999999888877 578999999999999999999999999986 799999999999999


Q ss_pred             hhhCCC-----CHHHHHHHHHHHHH
Q 005434          219 LRVCPT-----SEELWVEYLRMELT  238 (697)
Q Consensus       219 l~~~p~-----~~~lW~~y~~~E~~  238 (697)
                      +...|+     ...+|.........
T Consensus       104 ~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B          104 YSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHChhHHHHHHHHHHHHHHHHHHH
Confidence            999997     66777777665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.98  E-value=7.2e-05  Score=69.57  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHH-HHHHhcC
Q 005434          349 HDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKF-LMDMIAP  426 (697)
Q Consensus       349 ~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~-~~~~~~~  426 (697)
                      +...++.+++..|+++..|..++..+..             .++++.|...|+++++..|... .|..+... ...    
T Consensus        29 A~~~~~~al~~~p~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----   91 (177)
T 2e2e_A           29 QLQALQDKIRANPQNSEQWALLGEYYLW-------------QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----   91 (177)
T ss_dssp             CCHHHHHHHHHCCSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Confidence            3445566667788888888888888865             4789999999999999888654 44444443 221    


Q ss_pred             CcccccCCCCCchhHhHH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434          427 KKEETRDSELPSHVEHYI--SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~--~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (697)
                                    .+..  +.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...+
T Consensus        92 --------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~  152 (177)
T 2e2e_A           92 --------------ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM-DLNSPRINRT  152 (177)
T ss_dssp             --------------TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTSCHH
T ss_pred             --------------cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH-hhCCCCccHH
Confidence                          1334  789999999999999999999999999999999999999999999 7788765443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.98  E-value=9.7e-05  Score=74.89  Aligned_cols=179  Identities=9%  Similarity=-0.016  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~  521 (697)
                      +..+.|...|++|+..+|.++.+|...+..+...|++++|...+++++ ...|++...|..........+          
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g----------   86 (281)
T 2c2l_A           18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQSVKAHFFLGQCQLEME----------   86 (281)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTCHHHHHHHHHHHHHTT----------
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------
Confidence            568899999999999999999999999999999999999999999999 789999999998888877766          


Q ss_pred             chHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434          522 DILSIFELLKCILTKVSALE---SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~---~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~  598 (697)
                      +.+++...|++++...|...   ...+|.... ..     ..... .......  .   .....+...+..+.  .|+.+
T Consensus        87 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~-----~~~~~-~~~~~~~--~---~~~~~i~~~l~~l~--~~~~~  152 (281)
T 2c2l_A           87 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-IA-----KKKRW-NSIEERR--I---HQESELHSYLTRLI--AAERE  152 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-HH-----HHHHH-HHHHHTC--C---CCCCHHHHHHHHHH--HHHHH
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-HH-----HHHHH-HHHHHHH--H---hhhHHHHHHHHHHH--HHHHH
Confidence            47889999999998665431   134554321 11     01111 1111111  1   11333333333332  68899


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~  650 (697)
                      +|.+.|+++++..|.+..+......+.....     ...+.++.+|+++...
T Consensus       153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNHEGHEDDGHIRAQQACIEAKHD-----KYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHH-----HHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhhccccchhhhhhHHHHHHHHHH-----HHHHHHHHHHHhhhcc
Confidence            9999999999998876665555555554442     1678899999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.96  E-value=0.075  Score=63.93  Aligned_cols=256  Identities=11%  Similarity=0.089  Sum_probs=148.7

Q ss_pred             CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC---HHHHH
Q 005434          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS---EELWV  230 (697)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~---~~lW~  230 (697)
                      .++..+|.+|+....+.| ...+...|.+|     +++..|+..+... +..|+++.|-..|+.+....+.+   ..+=.
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~-~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence            467888888888777766 46677777665     6778888888877 47888888888888888777542   12333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh-hhhhhhhhhhhh
Q 005434          231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES-QKSVDLFREQGL  309 (697)
Q Consensus       231 ~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  309 (697)
                      .|+++..     ...-..++..        +.                               ..++ .....+..++.+
T Consensus      1176 aYAKl~r-----leele~fI~~--------~n-------------------------------~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1176 ALAKTNR-----LAELEEFING--------PN-------------------------------NAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             HHHhhcC-----HHHHHHHHhC--------CC-------------------------------HHHHHHHHHHHHhcCCH
Confidence            3343311     0000001100        00                               0001 111122233456


Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434          310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (697)
Q Consensus       310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~  389 (697)
                      +.|...|.+|        ..|..+...+...+.   .+.|-..+.++     .++..|...+.....             
T Consensus      1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge---~q~AIEaarKA-----~n~~aWkev~~acve------------- 1262 (1630)
T 1xi4_A         1212 DAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAVDGARKA-----NSTRTWKEVCFACVD------------- 1262 (1630)
T ss_pred             HHHHHHHHhh--------hHHHHHHHHHHHhCC---HHHHHHHHHHh-----CCHHHHHHHHHHHhh-------------
Confidence            7788888876        234455555544331   22233333322     456777665555543             


Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      .+.+..|+..... +...|.  ....-+.+.+.                  .+..+.+..+|+.|+..++.+..+|...+
T Consensus      1263 ~~Ef~LA~~cgl~-Iiv~~d--eLeeli~yYe~------------------~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLH-IVVHAD--ELEELINYYQD------------------RGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred             hhHHHHHHHHHHh-hhcCHH--HHHHHHHHHHH------------------cCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence            3556666665542 322221  11222333322                  35688899999999998888888887777


Q ss_pred             HHHHhc--CCHHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhcc
Q 005434          470 TLYLQL--GKLDEARKLAAKLCSGKLSD------SVQLWLLRISVEIRCVT  512 (697)
Q Consensus       470 ~l~~~~--~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~~~~~~  512 (697)
                      .++.+.  ++..++.+.+...+  ..|+      ...+|...+.+..+.++
T Consensus      1322 iLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A         1322 ILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhccc
Confidence            777765  34566677777666  3343      57899999988887764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.96  E-value=7.6e-05  Score=65.05  Aligned_cols=111  Identities=14%  Similarity=0.027  Sum_probs=87.3

Q ss_pred             ChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhH
Q 005434          363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVE  441 (697)
Q Consensus       363 ~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~  441 (697)
                      +...|...+.....             .++++.|...|+++++..|... .|.........                  .
T Consensus         3 ~a~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~------------------~   51 (126)
T 3upv_A            3 KAEEARLEGKEYFT-------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------L   51 (126)
T ss_dssp             HHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------T
T ss_pred             hHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------h
Confidence            34556666766654             4789999999999999988754 44433333222                  3


Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CCcHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRIS  505 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~  505 (697)
                      +..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...      |.+..++.....
T Consensus        52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HhCcccCCchhHHHHHHHHHH
Confidence            558899999999999999999999999999999999999999999999 677      777777655443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.94  E-value=0.00044  Score=70.28  Aligned_cols=202  Identities=8%  Similarity=-0.044  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHHHHcCC-----C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGC-----L-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR  509 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~-----~-~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~  509 (697)
                      +..+.|...|++|+...+     . ....|...+..+...|++++|...+++|+ ...|..      ...|.....+...
T Consensus        51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~  129 (292)
T 1qqe_A           51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILEN  129 (292)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            446778888888877521     1 24678888999999999999999999999 554432      3455555555554


Q ss_pred             h-cccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434          510 C-VTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS  582 (697)
Q Consensus       510 ~-~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~  582 (697)
                      . +          +.+++.+.|++|+...|...    ...+|......+...+  +.+...|++++...+....  ....
T Consensus       130 ~lg----------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~  197 (292)
T 1qqe_A          130 DLH----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL--SQWS  197 (292)
T ss_dssp             TTC----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT--TGGG
T ss_pred             hhc----------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc--ccHH
Confidence            3 4          47899999999998765321    1344555555554444  5677889988875432210  0012


Q ss_pred             hHHHHHH---HHHHhCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434          583 LPSAIIN---LVIQKDGIQQAREMYKRFLALPRPGLV-----LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN  654 (697)
Q Consensus       583 l~~~yl~---~~~~~~~~~~AR~iy~~~i~~~p~~~~-----~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~  654 (697)
                      ....|..   .....|+++.|...|++++...|....     ++...+.... .+   +..+++.+-..|++++...|..
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~-~~---~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-EG---DSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH-TT---CTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-cC---CHHHHHHHHHHhccCCccHHHH
Confidence            2223332   245679999999999999998776432     2222221111 11   1226778888887777655433


Q ss_pred             chHHHH
Q 005434          655 TSLWRD  660 (697)
Q Consensus       655 ~~lW~~  660 (697)
                      ..+|..
T Consensus       274 ~~~~~~  279 (292)
T 1qqe_A          274 ITILNK  279 (292)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.93  E-value=0.00027  Score=64.18  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.+..+|...+......| +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETV  107 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence            567789999999999999999999999888777 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRM  235 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~  235 (697)
                      +..+|.+..+|..+...
T Consensus       108 ~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A          108 VKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHSTTCHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            99999998888555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.92  E-value=8.1e-05  Score=68.38  Aligned_cols=91  Identities=9%  Similarity=0.091  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++..+|......+...+ +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF-DMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999999986 799999999999999


Q ss_pred             hhhCCCCHHHHHH
Q 005434          219 LRVCPTSEELWVE  231 (697)
Q Consensus       219 l~~~p~~~~lW~~  231 (697)
                      ++..|++...|..
T Consensus       106 l~~~p~~~~~~~~  118 (164)
T 3sz7_A          106 IEAEGNGGSDAMK  118 (164)
T ss_dssp             HHHHSSSCCHHHH
T ss_pred             HHhCCCchHHHHH
Confidence            9999998775543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=8.1e-05  Score=66.31  Aligned_cols=96  Identities=8%  Similarity=-0.093  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~  215 (697)
                      ...+...|++++...|++   ..+|..++......+ +.++...|++++..+|.++.+|...+.... ..|+.+.|...|
T Consensus        44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~  122 (148)
T 2dba_A           44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE-KLGRLDQAVLDL  122 (148)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            566788999999999988   889988888877776 578999999999999999999999999886 789999999999


Q ss_pred             HHhhhhCCCCHHHHHHHHHHH
Q 005434          216 QNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       216 ~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ++++...|++..+|..+.++.
T Consensus       123 ~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          123 QRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999888776653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.91  E-value=0.0002  Score=60.54  Aligned_cols=111  Identities=13%  Similarity=0.012  Sum_probs=88.7

Q ss_pred             hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (697)
Q Consensus       364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~  442 (697)
                      ...|..++.....             .++++.|...|++++...|... .|.........                  .+
T Consensus         4 ~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~   52 (118)
T 1elw_A            4 VNELKEKGNKALS-------------VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK------------------KG   52 (118)
T ss_dssp             HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HT
T ss_pred             HHHHHHHHHHHHH-------------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh------------------hc
Confidence            3456666766654             4789999999999999888653 44444333322                  35


Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV  506 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l  506 (697)
                      ..+.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|.....+
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL-KHEANNPQLKEGLQNM  115 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999 7899998888765544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.89  E-value=0.00011  Score=63.60  Aligned_cols=118  Identities=14%  Similarity=0.006  Sum_probs=93.3

Q ss_pred             CChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchh
Q 005434          362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHV  440 (697)
Q Consensus       362 ~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~  440 (697)
                      .+...|..++.....             .++++.|...|++++...|... .|.........                  
T Consensus        10 ~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------   58 (131)
T 2vyi_A           10 AEAERLKTEGNEQMK-------------VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK------------------   58 (131)
T ss_dssp             HHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------
T ss_pred             hhhHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------
Confidence            345567777777764             4779999999999999887643 44433333322                  


Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                      .+..+.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|.....+....+
T Consensus        59 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL-ELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHT
T ss_pred             hhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCccchHHHHHHHHHHHHHh
Confidence            3557899999999999999999999999999999999999999999999 788999888887766665544

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.89  E-value=7.3e-05  Score=67.08  Aligned_cols=126  Identities=13%  Similarity=0.196  Sum_probs=92.6

Q ss_pred             HhhHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHh
Q 005434           76 KQRRKFEYRLKRP--SPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR  153 (697)
Q Consensus        76 ~kR~~fE~~l~r~--~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~  153 (697)
                      .-|..||..|+.-  ..-+..|++||.|=.+.                        ..   .   +...+..+++||++.
T Consensus         8 ~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~------------------------~P---~---g~~~l~~lLErc~~~   57 (152)
T 4a1g_A            8 NVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN------------------------FP---E---NKEYLITLLEHLMKE   57 (152)
T ss_dssp             HHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT------------------------CS---S---CTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH------------------------cC---C---CchhHHHHHHHHHHH
Confidence            3467899999873  23368999999994221                        01   0   112377899999998


Q ss_pred             cCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434          154 FKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (697)
Q Consensus       154 ~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~  222 (697)
                      |.++         +++|+.|+++|.     ....+|.-+...  --..+.+|+.+|.+. +..|++..|..||++|++.+
T Consensus        58 f~~~~~YknD~RyLklWl~ya~~~~-----dp~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~Gi~~~  131 (152)
T 4a1g_A           58 FLDKKKYHNDPRFISYCLKFAEYNS-----DLHQFFEFLYNHGIGTLSSPLYIAWAGHL-EAQGELQHASAVLQRGIQNQ  131 (152)
T ss_dssp             HTTCGGGTTCHHHHHHHHHHHTTBS-----CHHHHHHHHHTTTTTTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTT
T ss_pred             hcccccccCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC
Confidence            7543         579999999862     367788877654  345789999999998 68999999999999999998


Q ss_pred             CCC-HHHHHHHHHHHH
Q 005434          223 PTS-EELWVEYLRMEL  237 (697)
Q Consensus       223 p~~-~~lW~~y~~~E~  237 (697)
                      ..- ..|-..|-.|..
T Consensus       132 A~P~~rL~~~~~~F~~  147 (152)
T 4a1g_A          132 AEPREFLQQQYRLFQT  147 (152)
T ss_dssp             CBSHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH
Confidence            542 356666666653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.88  E-value=0.00029  Score=64.02  Aligned_cols=107  Identities=13%  Similarity=0.037  Sum_probs=85.5

Q ss_pred             hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434          365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (697)
Q Consensus       365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (697)
                      ..|..+|..+..             .++++.|...|+++++..|... .|.........                  .+.
T Consensus        14 ~~~~~~a~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~------------------~~~   62 (166)
T 1a17_A           14 EELKTQANDYFK-------------AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------------TEC   62 (166)
T ss_dssp             HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------TTC
T ss_pred             HHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCC
Confidence            446666666654             4789999999999999887643 44443333222                  355


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434          444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR  503 (697)
Q Consensus       444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (697)
                      .+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..+
T Consensus        63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~  121 (166)
T 1a17_A           63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV-KVKPHDKDAKMKY  121 (166)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHH
Confidence            7899999999999999999999999999999999999999999999 7899988887443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=0.00024  Score=63.15  Aligned_cols=116  Identities=11%  Similarity=-0.066  Sum_probs=92.7

Q ss_pred             CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHhcCCcccccCCC
Q 005434          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSE  435 (697)
Q Consensus       360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~----lw~~yi~~~~~~~~~~~~~~~~~~  435 (697)
                      .|.+...|...+.....             .++++.|...|+++++..|...    .|.........             
T Consensus        24 ~~~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-------------   77 (148)
T 2dba_A           24 GASSVEQLRKEGNELFK-------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-------------   77 (148)
T ss_dssp             TCCCHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred             chHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-------------
Confidence            34566777777877765             4789999999999999988752    33333332221             


Q ss_pred             CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       436 ~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                           .+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++..+|.....+.
T Consensus        78 -----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           78 -----LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV-SLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             -----TTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHH
T ss_pred             -----HccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHH
Confidence                 3558899999999999999999999999999999999999999999999 78999988887665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.88  E-value=9e-05  Score=64.53  Aligned_cols=117  Identities=10%  Similarity=-0.074  Sum_probs=91.3

Q ss_pred             CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCch
Q 005434          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH  439 (697)
Q Consensus       361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~  439 (697)
                      |.++..|..++..+..             .++++.|...|+++++..|... .|........                  
T Consensus        13 ~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~------------------   61 (133)
T 2lni_A           13 PDLALMVKNKGNECFQ-------------KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT------------------   61 (133)
T ss_dssp             SCHHHHHHHHHHHHHH-------------TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT------------------
T ss_pred             cccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH------------------
Confidence            3446667777777765             4778999999999999887543 3333332211                  


Q ss_pred             hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (697)
Q Consensus       440 ~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (697)
                      ..+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+...
T Consensus        62 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           62 KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL-DLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCGGGTHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHH
Confidence            13557899999999999999999999999999999999999999999999 7889888888766655543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.83  E-value=0.00036  Score=59.54  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=88.9

Q ss_pred             hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (697)
Q Consensus       364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~  442 (697)
                      ...|..++..+..             .++++.|...|+++++..|... .|.........                  .+
T Consensus         9 ~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~   57 (125)
T 1na0_A            9 AEAWYNLGNAYYK-------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK------------------QG   57 (125)
T ss_dssp             HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TT
T ss_pred             HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH------------------hC
Confidence            5667778877765             4789999999999998877543 44444333322                  34


Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                      ..+.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...+.....+.
T Consensus        58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999 78898887776655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.82  E-value=0.00019  Score=60.15  Aligned_cols=97  Identities=11%  Similarity=0.105  Sum_probs=86.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--CchHHHHHHHH
Q 005434          587 IINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--NTSLWRDYYST  664 (697)
Q Consensus       587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~~~lW~~y~~f  664 (697)
                      ........|++++|...|++++...|.....+...+.+....+      +.+.|..+|++++...|.  +..+|...+..
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE------RYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            3444556899999999999999999988888888888887888      899999999999999998  88999999999


Q ss_pred             HHhc-CChhhHHHHHHHHHhhcCCcc
Q 005434          665 ETKL-GTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       665 E~~~-G~~~~a~~vy~ral~~~~~~~  689 (697)
                      .... |+.+.|...+.+++...++++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999 999999999999999887653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.81  E-value=8.2e-05  Score=77.62  Aligned_cols=123  Identities=11%  Similarity=-0.011  Sum_probs=97.6

Q ss_pred             HhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch----------------hHHHHHHHHH
Q 005434          357 QRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS----------------MIFDLYTKFL  420 (697)
Q Consensus       357 ~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~----------------~lw~~yi~~~  420 (697)
                      ....|+....|..++..+..             .++++.|...|++++...|..                ..|.......
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFK-------------EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566777788877765             478999999999999988865                2222222222


Q ss_pred             HHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434          421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (697)
                      .                  ..+..+.|...|++|+..+|.++..|...+..+...|++++|...+++++ ...|++...|
T Consensus       207 ~------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~a~  267 (336)
T 1p5q_A          207 L------------------KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL-QLYPNNKAAK  267 (336)
T ss_dssp             H------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHH
T ss_pred             H------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHH
Confidence            1                  13568899999999999999999999999999999999999999999999 7899999988


Q ss_pred             HHHHHHHHHhc
Q 005434          501 LLRISVEIRCV  511 (697)
Q Consensus       501 ~~~i~l~~~~~  511 (697)
                      .....+....+
T Consensus       268 ~~l~~~~~~~~  278 (336)
T 1p5q_A          268 TQLAVCQQRIR  278 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88777766555

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.80  E-value=0.00033  Score=61.54  Aligned_cols=85  Identities=11%  Similarity=-0.091  Sum_probs=73.2

Q ss_pred             HhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHH
Q 005434          152 MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV  230 (697)
Q Consensus       152 ~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~  230 (697)
                      ...|.+...|...+..+...| +..+...|.+++..+|.++.+|...+.... ..|+++.|...|+++++..|++...|.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~   81 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHF   81 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence            345778999999999888877 578999999999999999999999999986 799999999999999999999888887


Q ss_pred             HHHHHHH
Q 005434          231 EYLRMEL  237 (697)
Q Consensus       231 ~y~~~E~  237 (697)
                      .......
T Consensus        82 ~l~~~~~   88 (137)
T 3q49_B           82 FLGQCQL   88 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.79  E-value=0.0003  Score=61.08  Aligned_cols=96  Identities=10%  Similarity=0.077  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR  212 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR  212 (697)
                      ...+...|++++..+|++.   ..|...+......| +..+...|++++..+|++   +..|...+.... ..|+.+.|.
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~~~A~   96 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKNTEAQ   96 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCHHHHH
Confidence            5677889999999999998   78888888777777 578999999999999999   888999998886 799999999


Q ss_pred             HHHHHhhhhCCCCHHHHHHHHHHH
Q 005434          213 ALMQNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       213 ~~~~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ..|++++...|+++..+....++.
T Consensus        97 ~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           97 QTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHH
Confidence            999999999999877766655544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.79  E-value=0.0024  Score=66.17  Aligned_cols=167  Identities=10%  Similarity=0.069  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch-HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS-QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (697)
Q Consensus       347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~-~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~  424 (697)
                      +.+-.+++.++...|++...|.........             .+ .++.+...++.++...|... +|..= .+....+
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-------------l~~~l~eEL~~~~~~L~~nPKny~aW~hR-~wlL~~l  136 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTS-------------LNKSLEDELRLMNEFAVQNLKSYQVWHHR-LLLLDRI  136 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCCHHHHHHHHHHHHHTTCCCHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHh
Confidence            457778889999999999999887766543             23 48899999999999988765 77643 3333222


Q ss_pred             cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhccCCCc
Q 005434          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--------EARKLAAKLCSGKLSDS  496 (697)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~--------~A~~l~~~al~~~~P~~  496 (697)
                      ..               ...+.....+++++..+|.+...|..-.-++...|..+        ++.+.+++++ ..+|.+
T Consensus       137 ~~---------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I-~~dp~N  200 (349)
T 3q7a_A          137 SP---------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML-RVDGRN  200 (349)
T ss_dssp             CC---------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-HHCTTC
T ss_pred             cC---------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH-HhCCCC
Confidence            00               02457888999999999999999977665666555555        8889999999 789999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434          497 VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM  548 (697)
Q Consensus       497 ~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~  548 (697)
                      ...|..+..+....+...   ...+.+++..+.+.++|..-|..  ...|..
T Consensus       201 ~SAW~~R~~lL~~l~~~~---~~~~~~~eELe~~~~aI~~~P~n--~SaW~Y  247 (349)
T 3q7a_A          201 NSAWGWRWYLRVSRPGAE---TSSRSLQDELIYILKSIHLIPHN--VSAWNY  247 (349)
T ss_dssp             HHHHHHHHHHHTTSTTCC---CCHHHHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             HHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence            999998887765543210   01112566777788888877765  456863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.78  E-value=0.00036  Score=72.68  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~  203 (697)
                      ...+...|++++...|.+               ..+|...+....+.+ +..+...|++++..+|+++..|...+.... 
T Consensus       163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-  241 (336)
T 1p5q_A          163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-  241 (336)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-
Confidence            567889999999999999               699999999888877 578999999999999999999999999886 


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 005434          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKA  245 (697)
Q Consensus       204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~  245 (697)
                      ..|+++.|+..|+++++..|.+..+|.....+....+....+
T Consensus       242 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999888887766655444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.75  E-value=0.00019  Score=60.10  Aligned_cols=85  Identities=9%  Similarity=-0.011  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhc-CCHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHN-LNVTAARALM  215 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~--~~~lW~~~a~~e~~~~-~~~~~aR~~~  215 (697)
                      ...+...|++++...|.+...|..++......+ +..+...|++++...|.  ++.+|...+.... .. |+.+.|...|
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~  100 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR-YIEGKEVEAEIAE  100 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT-TCSSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHhCCHHHHHHHH
Confidence            467788999999999999999999999888777 57899999999999999  9999999999986 89 9999999999


Q ss_pred             HHhhhhCCCC
Q 005434          216 QNGLRVCPTS  225 (697)
Q Consensus       216 ~r~l~~~p~~  225 (697)
                      .+++...|.+
T Consensus       101 ~~~~~~~p~~  110 (112)
T 2kck_A          101 ARAKLEHHHH  110 (112)
T ss_dssp             HHHGGGCCCC
T ss_pred             HHHhhcccCC
Confidence            9999999975

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.72  E-value=5.6e-05  Score=65.23  Aligned_cols=87  Identities=14%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          142 RILEIYRLAVMR---FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       142 r~~~iyeral~~---~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      .+...|++++..   .|++...|......+...| +..+...|++++..+|+++.+|...+.... ..|+.+.|...|++
T Consensus         8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~   86 (117)
T 3k9i_A            8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLK   86 (117)
T ss_dssp             CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            456789999998   6989999999999888877 678999999999999999999999999886 79999999999999


Q ss_pred             hhhhCCCCHHHH
Q 005434          218 GLRVCPTSEELW  229 (697)
Q Consensus       218 ~l~~~p~~~~lW  229 (697)
                      ++...|+++.+.
T Consensus        87 al~~~p~~~~~~   98 (117)
T 3k9i_A           87 IIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHCCCHHHH
T ss_pred             HHHhCCCcHHHH
Confidence            999999987654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.72  E-value=0.0024  Score=67.30  Aligned_cols=194  Identities=10%  Similarity=-0.054  Sum_probs=121.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcc---CCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          467 RYVTLYLQLGKLDEARKLAAKLCSGK---LSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       467 ~y~~l~~~~~~~~~A~~l~~~al~~~---~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      ..+..+...|++++|...+++|+ ..   .|+.   ...|..........+          +.+.+.+.|.+|+...+..
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~----------~~~~A~~~~~~al~~~~~~  176 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMK----------QTYFSMDYARQAYEIYKEH  176 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhC
Confidence            35677788999999999999998 43   3443   345555555554444          4788888999999854321


Q ss_pred             h-----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHH---HHHHHhCCHHHHHHHHHHHHh-
Q 005434          541 E-----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII---NLVIQKDGIQQAREMYKRFLA-  609 (697)
Q Consensus       541 ~-----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl---~~~~~~~~~~~AR~iy~~~i~-  609 (697)
                      .     ....+......+...+  +.+...|++|+...+....   ...+...|.   ......|++++|...|++++. 
T Consensus       177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            1     1222222222233333  5778888888877654321   222222332   224568999999999999998 


Q ss_pred             ----CC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchH---HHHHHHHHHhcCC---hhhHHH
Q 005434          610 ----LP-RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSL---WRDYYSTETKLGT---SETATA  676 (697)
Q Consensus       610 ----~~-p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~l---W~~y~~fE~~~G~---~~~a~~  676 (697)
                          .. |.....+...+.+...+|      +.+.|...|++++...+  .++..   +......-...|+   .+.|..
T Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~  327 (383)
T 3ulq_A          254 FEESNILPSLPQAYFLITQIHYKLG------KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD  327 (383)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred             HHhhccchhHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence                44 444556667777777777      89999999999999865  33322   2233334444566   444444


Q ss_pred             HHHH
Q 005434          677 VYWR  680 (697)
Q Consensus       677 vy~r  680 (697)
                      ++++
T Consensus       328 ~~~~  331 (383)
T 3ulq_A          328 FLES  331 (383)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.70  E-value=0.00038  Score=65.99  Aligned_cols=100  Identities=8%  Similarity=0.006  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDI----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~  202 (697)
                      ...+...|++++...|.+.                .+|...+..+...+ +..+...|++++..+|.++..|...+....
T Consensus        54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  133 (198)
T 2fbn_A           54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM  133 (198)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            5677889999999999887                88988888887777 578999999999999999999999999886


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHH
Q 005434          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL  240 (697)
Q Consensus       203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~  240 (697)
                       ..|+++.|...|++++...|.+..+|.....+....+
T Consensus       134 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          134 -YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             -HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence             7999999999999999999999999988887765544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.66  E-value=0.00035  Score=63.57  Aligned_cols=90  Identities=9%  Similarity=-0.054  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N----------GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN--  205 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~----------~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~--  205 (697)
                      ....+...|++++...|++.+.|..+.......+ .          +.+...|++||.++|+.+..|...+.... ..  
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~-~lg~   95 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-Hhcc
Confidence            4567788999999999999999999998766543 2          48899999999999999999998877765 33  


Q ss_pred             ---------CCHHHHHHHHHHhhhhCCCCHHHH
Q 005434          206 ---------LNVTAARALMQNGLRVCPTSEELW  229 (697)
Q Consensus       206 ---------~~~~~aR~~~~r~l~~~p~~~~lW  229 (697)
                               |+++.|...|++|+..+|++..-|
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~  128 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL  128 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence                     589999999999999999975333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.65  E-value=0.023  Score=61.47  Aligned_cols=334  Identities=10%  Similarity=0.003  Sum_probs=168.4

Q ss_pred             hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHH-hhcccCCCCCC
Q 005434          305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR-LKMTDSVSKDG  383 (697)
Q Consensus       305 ~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~-~~l~~~~~~~~  383 (697)
                      ..++.+.|...|+++.+.-  +.+....+-.++..-+.......+...+.++...   ++..+..++. +.....     
T Consensus        15 ~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~-----   84 (452)
T 3e4b_A           15 KRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPG-----   84 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CCTGGGTCC-------------------------------CHHHHHHHHHTC-------
T ss_pred             hCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCC-----
Confidence            4456789999999998652  1111111111221111111125666667776655   5566777777 332210     


Q ss_pred             CCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccC---------CCCC------------chhHh
Q 005434          384 TSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRD---------SELP------------SHVEH  442 (697)
Q Consensus       384 ~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~---------~~~~------------~~~~~  442 (697)
                          ...++.++|...|+++++.-+..-.+. .................+         ....            .....
T Consensus        85 ----~~~~~~~~A~~~~~~Aa~~g~~~A~~~-Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           85 ----ATEAEHHEAESLLKKAFANGEGNTLIP-LAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHTTCSSCHHH-HHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             ----CCCcCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence                123678899999999998544322111 111111100000000000         0000            00123


Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG---KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~---~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~  519 (697)
                      ..+.+..++..+...+|.   .+...+.++...|   ++++|...+++++ ...|.....|.....+... +.   +++ 
T Consensus       160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g~~~a~~~~~Lg~~y~~-g~---~~~-  230 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV-SRGTVTAQRVDSVARVLGD-AT---LGT-  230 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHTC-GG---GSS-
T ss_pred             CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC-CC---CCC-
Confidence            455566677776655544   7778888888899   8999999999999 5667666655444444422 21   111 


Q ss_pred             ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHH-H--Hhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh
Q 005434          520 KADILSIFELLKCILTKVSALESESLWLMALKF-F--MNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK  594 (697)
Q Consensus       520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~-~--~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~  594 (697)
                       .+.+++.+.|+++.   |..  ...+...... +  ...+  +.+...|+++...         ...-....+-.+...
T Consensus       231 -~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~  295 (452)
T 3e4b_A          231 -PDEKTAQALLEKIA---PGY--PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---------DQPRAELLLGKLYYE  295 (452)
T ss_dssp             -CCHHHHHHHHHHHG---GGS--THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHc
Confidence             16789999999997   322  1222222222 2  1122  5677788887742         111122223334445


Q ss_pred             C-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH-HHh-
Q 005434          595 D-----GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST-ETK-  667 (697)
Q Consensus       595 ~-----~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f-E~~-  667 (697)
                      |     +.++|...|++++   +.....+.....+... | .+...+.++|..+|+++....  ++........+ +.. 
T Consensus       296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G-~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~  368 (452)
T 3e4b_A          296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-G-YLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGK  368 (452)
T ss_dssp             CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-T-TTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCT
T ss_pred             CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-C-CCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCC
Confidence            5     9999999999999   4444433333323221 1 112348999999999999753  23322233332 222 


Q ss_pred             --cCChhhHHHHHHHHHhh
Q 005434          668 --LGTSETATAVYWRARKT  684 (697)
Q Consensus       668 --~G~~~~a~~vy~ral~~  684 (697)
                        ..|...|...|.+|...
T Consensus       369 g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          369 GTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             TBCCCHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHC
Confidence              34888999999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.64  E-value=0.00017  Score=61.78  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (697)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~  221 (697)
                      +...|++++...|++...|..++......| +..+...|++++...|.++..|...+.... ..|+.+.|+..|++++..
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999888877 578999999999999999999999999886 789999999999999999


Q ss_pred             CCC
Q 005434          222 CPT  224 (697)
Q Consensus       222 ~p~  224 (697)
                      .|.
T Consensus        83 ~~~   85 (115)
T 2kat_A           83 AQS   85 (115)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.62  E-value=0.00022  Score=62.11  Aligned_cols=92  Identities=7%  Similarity=-0.087  Sum_probs=80.5

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCC
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGT  670 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (697)
                      +...|++++|...|++++...|.+...|.....+....+      +.+.|...|++++...|.++..|......-...|+
T Consensus        27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g------~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE------KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            456899999999999999999999998888888888888      89999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhcCCc
Q 005434          671 SETATAVYWRARKTLKDS  688 (697)
Q Consensus       671 ~~~a~~vy~ral~~~~~~  688 (697)
                      .+.|...|+++++.-|+.
T Consensus       101 ~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence            999999999999876643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.61  E-value=0.00062  Score=62.30  Aligned_cols=88  Identities=11%  Similarity=0.106  Sum_probs=43.5

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE  672 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (697)
                      ..|++++|...|++++...|.+..+|...+.....++      +.+.|...|++++...|.++..|......-...|+.+
T Consensus        23 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   96 (164)
T 3sz7_A           23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG------QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK   96 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Confidence            3445555555555555554444444444444444444      4455555555555554444455555555544555555


Q ss_pred             hHHHHHHHHHhhcC
Q 005434          673 TATAVYWRARKTLK  686 (697)
Q Consensus       673 ~a~~vy~ral~~~~  686 (697)
                      .|...|.++++..+
T Consensus        97 ~A~~~~~~al~~~p  110 (164)
T 3sz7_A           97 GAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCC
Confidence            55555555554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.59  E-value=0.00051  Score=62.77  Aligned_cols=96  Identities=14%  Similarity=0.095  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMR------------------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW  200 (697)
Q Consensus       140 ~~r~~~iyeral~~------------------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~  200 (697)
                      ...+...|++++..                  .|.+..+|...+....+.| +..+...+++++..+|+++..|...+..
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  106 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKA  106 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            56778899999998                  7777789988888877777 5789999999999999999999999998


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCH-HHHHHHHHHH
Q 005434          201 EFDHNLNVTAARALMQNGLRVCPTSE-ELWVEYLRME  236 (697)
Q Consensus       201 e~~~~~~~~~aR~~~~r~l~~~p~~~-~lW~~y~~~E  236 (697)
                      .. ..|+++.|...|++++...|++. .++.....+.
T Consensus       107 ~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A          107 RI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            86 89999999999999999999987 5665555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.56  E-value=0.0045  Score=64.75  Aligned_cols=224  Identities=10%  Similarity=-0.018  Sum_probs=141.8

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH----HH--HHHHHHHHHHh
Q 005434          442 HYISHLLTVYEKAEAMGCLTED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV----QL--WLLRISVEIRC  510 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~-----lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~----~l--W~~~i~l~~~~  510 (697)
                      +..+.+...+++++...|....     .+...+..+...|++++|...+++++ ...|...    ..  ......+....
T Consensus        28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE-QMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            5578899999999988665422     34555677888999999999999998 4433221    11  12222333333


Q ss_pred             cccCCCCCCccchHHHHHHHHHHHhhcCh------hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434          511 VTRNSFSPSKADILSIFELLKCILTKVSA------LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS  582 (697)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~f~~al~~~p~------~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~  582 (697)
                      |          +.+.+.+.|++++...+.      ......+......+...+  +.+...+++++.......    ...
T Consensus       107 G----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~  172 (373)
T 1hz4_A          107 G----------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ----PQQ  172 (373)
T ss_dssp             T----------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC----GGG
T ss_pred             C----------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC----cHH
Confidence            4          478888999999875421      011222222222222223  678888999887654321    111


Q ss_pred             hHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCC--CHHHHHH-----HHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434          583 LPSAI---INLVIQKDGIQQAREMYKRFLALPRP--GLVLYQN-----CIELENNLASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       583 l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~--~~~~~~~-----~i~lE~~~~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      ....|   .......|++++|...+++++...+.  ....+..     .+.+....|      +.+.|+..+++++...+
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~A~~~~~~a~~~~~  246 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG------DKAAAANWLRHTAKPEF  246 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC------CHHHHHHHHHhCCCCCC
Confidence            22222   23345689999999999999875221  1122222     222334566      89999999999987655


Q ss_pred             CC----chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          653 QN----TSLWRDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       653 ~~----~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ..    ...+..........|+.+.|..++.+++...+
T Consensus       247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  284 (373)
T 1hz4_A          247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR  284 (373)
T ss_dssp             TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            32    13567778888889999999999999987653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.55  E-value=0.00082  Score=57.86  Aligned_cols=96  Identities=8%  Similarity=0.037  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------PGVWIYAAAWEFDHNLNVTAA  211 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~-------~~lW~~~a~~e~~~~~~~~~a  211 (697)
                      ...+...|++++...|.+..+|...+......| +..+...|++++...|.+       +.+|...+.... ..|+++.|
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A   98 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF-KEEKYKDA   98 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-HhccHHHH
Confidence            567788999999999999999999999887777 578999999999998877       889999999886 79999999


Q ss_pred             HHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434          212 RALMQNGLRVCPTSEELWVEYLRMEL  237 (697)
Q Consensus       212 R~~~~r~l~~~p~~~~lW~~y~~~E~  237 (697)
                      ...|++++...| ++.++.....+..
T Consensus        99 ~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           99 IHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            999999999999 5777776665543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.53  E-value=0.0039  Score=65.55  Aligned_cols=234  Identities=14%  Similarity=0.078  Sum_probs=140.6

Q ss_pred             HHHHhc-CchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHH
Q 005434          167 FCRQRK-NGRMKKVLAQVIRFHPK------VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY  239 (697)
Q Consensus       167 ~~~~~~-~~~~~~~~~ral~~~p~------~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~  239 (697)
                      +....| +..+...|++|+...+.      ...++...+.... ..|+.+.|...+++|+...+.....-...+......
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            334445 57899999999987532      2356666777775 789999999999999998765322111111111111


Q ss_pred             HHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHH
Q 005434          240 LNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGA  319 (697)
Q Consensus       240 ~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~a  319 (697)
                      +..                                                            ....++++.|...|++|
T Consensus       189 g~~------------------------------------------------------------y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          189 AGN------------------------------------------------------------YDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHH------------------------------------------------------------HHHTTCHHHHHHHHHHH
T ss_pred             HHH------------------------------------------------------------HHHhCCHHHHHHHHHHH
Confidence            100                                                            00011345677777777


Q ss_pred             HhcC---CCchH---HHHHHHHHHHHccccCcHHHHHHHHHHHHh-----hCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434          320 VEAL---PSSFN---LRQRFFEIVEATNLAQSDDMHDKILSDMQR-----DFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (697)
Q Consensus       320 l~~~---p~~~~---~~~~~~~~~~~fe~~~~~~~~~~il~~~~~-----~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~  388 (697)
                      ++..   ++...   .+..+-.++...   +..+.+...+++++.     ..|.....+..+|..+..            
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~------------  273 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRS---GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK------------  273 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH------------
Confidence            7532   22211   122222222222   235677777888777     666667778888888875            


Q ss_pred             cchHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434          389 VPSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (697)
Q Consensus       389 ~~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~  466 (697)
                       .++.++|...|++|++..+..  ..+...+......+.... +          ...+.++...+++. ...+....++.
T Consensus       274 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~----------~~~~~~al~~~~~~-~~~~~~~~~~~  340 (378)
T 3q15_A          274 -AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-D----------ERKIHDLLSYFEKK-NLHAYIEACAR  340 (378)
T ss_dssp             -TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-C----------HHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-c----------HHHHHHHHHHHHhC-CChhHHHHHHH
Confidence             488999999999999876532  222222233332222111 1          13456677766652 11233456778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q 005434          467 RYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       467 ~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      ..+..+...|++++|...+++++
T Consensus       341 ~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          341 SAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            88999999999999999999988

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.50  E-value=0.00021  Score=61.47  Aligned_cols=88  Identities=19%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434          442 HYISHLLTVYEKAEAM---GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~---~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~  518 (697)
                      +..+.|...|++++..   +|.++..|...+..+...|++++|...+++++ ...|++..+|..........|       
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g-------   75 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFPNHQALRVFYAMVLYNLG-------   75 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT-------
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHcC-------
Confidence            4566789999999998   47778899999999999999999999999999 789999999998888877776       


Q ss_pred             CccchHHHHHHHHHHHhhcChh
Q 005434          519 SKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       519 ~~~~~~~~~~~f~~al~~~p~~  540 (697)
                         +.+++.+.|++++...|..
T Consensus        76 ---~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           76 ---RYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCC
T ss_pred             ---CHHHHHHHHHHHHHhCCCc
Confidence               3788999999999877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.48  E-value=0.0015  Score=62.09  Aligned_cols=120  Identities=13%  Similarity=-0.026  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      .++++.|...|++++.  +....|.........                  .+..+.|...|++++..+|.++..|...+
T Consensus        19 ~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~lg   78 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQD--PHSRICFNIGCMYTI------------------LKNMTEAEKAFTRSINRDKHLAVAYFQRG   78 (213)
T ss_dssp             TTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcC--CChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            4779999999999963  233333333322221                  35688999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcH----------------HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSV----------------QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~----------------~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a  533 (697)
                      ..+...|++++|...+++++ ...|.+.                ..|..........+          +.+.+.+.|+++
T Consensus        79 ~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a  147 (213)
T 1hh8_A           79 MLYYQTEKYDLAIKDLKEAL-IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE----------EWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT----------CHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHH-HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc----------CHHHHHHHHHHH
Confidence            99999999999999999999 6666544                78877777776665          478899999999


Q ss_pred             HhhcChh
Q 005434          534 LTKVSAL  540 (697)
Q Consensus       534 l~~~p~~  540 (697)
                      +...|..
T Consensus       148 l~~~p~~  154 (213)
T 1hh8_A          148 TSMKSEP  154 (213)
T ss_dssp             HTTCCSG
T ss_pred             HHcCccc
Confidence            9877644

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.47  E-value=0.00096  Score=72.67  Aligned_cols=104  Identities=6%  Similarity=0.011  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~  203 (697)
                      ...+...|++|+...|.+               ..+|...+..+.+.+ +..+...|+++|..+|+++..|...+.... 
T Consensus       284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-  362 (457)
T 1kt0_A          284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-  362 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence            567889999999999998               789988888877777 678999999999999999999999999886 


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHH
Q 005434          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLK  244 (697)
Q Consensus       204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~  244 (697)
                      ..|+++.|+..|+++++..|++..+|.....+....+....
T Consensus       363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999988888888877766554433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.45  E-value=0.0017  Score=55.35  Aligned_cols=83  Identities=11%  Similarity=-0.073  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHH
Q 005434          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS  525 (697)
Q Consensus       446 ~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~  525 (697)
                      .+...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..........+          +.+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g----------~~~~   71 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDPTYSVAWKWLGKTLQGQG----------DRAG   71 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT----------CHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHcC----------CHHH
Confidence            36778999999999999999999999999999999999999999 789999999988888877766          3788


Q ss_pred             HHHHHHHHHhhcCh
Q 005434          526 IFELLKCILTKVSA  539 (697)
Q Consensus       526 ~~~~f~~al~~~p~  539 (697)
                      +...|++++...|.
T Consensus        72 A~~~~~~al~~~~~   85 (115)
T 2kat_A           72 ARQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999886654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.45  E-value=0.00053  Score=60.10  Aligned_cols=92  Identities=12%  Similarity=0.160  Sum_probs=78.8

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-------hHHHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-------SLWRDYYS  663 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-------~lW~~y~~  663 (697)
                      ....|++++|...|+++|...|.....|...+.....++      +.+.|...|++++...|.+.       .++.....
T Consensus        18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~   91 (127)
T 4gcn_A           18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK------KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN   91 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh------hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            346799999999999999999999998888887777888      89999999999999887332       35666677


Q ss_pred             HHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          664 TETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       664 fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      .....|+.+.|...|++|+...+++
T Consensus        92 ~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           92 AFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            7888999999999999999987765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.43  E-value=0.0088  Score=62.84  Aligned_cols=228  Identities=10%  Similarity=-0.025  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHcC---CC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH----HHHHHHHHHHHHhc
Q 005434          442 HYISHLLTVYEKAEAMG---CL---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV----QLWLLRISVEIRCV  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~---~~---~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~----~lW~~~i~l~~~~~  511 (697)
                      +..+.|...|++|+...   +.   ...++...+..+...|+++.|...+.+|+ ..++...    .+-..+..+-....
T Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL-DIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHH
Confidence            55677888888887652   11   24566677777888888888888888888 7766422    12222222222221


Q ss_pred             ccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH
Q 005434          512 TRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS  585 (697)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~  585 (697)
                      .       ..+.+.+.+.|++|+...+...    ....+......+...+  +.+...|++++.......    .+....
T Consensus       194 ~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~  262 (378)
T 3q15_A          194 D-------FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV----PDLLPK  262 (378)
T ss_dssp             H-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----GGGHHH
T ss_pred             H-------hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC----ChhHHH
Confidence            1       1257778888888887542211    1122222222222222  567788888887554322    122222


Q ss_pred             HH---HHHHHHhCCHHHHHHHHHHHHhCCCC--C---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434          586 AI---INLVIQKDGIQQAREMYKRFLALPRP--G---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL  657 (697)
Q Consensus       586 ~y---l~~~~~~~~~~~AR~iy~~~i~~~p~--~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l  657 (697)
                      .+   .......|++++|...|++++...+.  +   ...+.....+-...+   +...+.++-..|+..- ..+....+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~---~~~~~~~al~~~~~~~-~~~~~~~~  338 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV---DERKIHDLLSYFEKKN-LHAYIEAC  338 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhCC-ChhHHHHH
Confidence            22   22245678888888888888886443  1   112222222222222   0011444444444410 00122356


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          658 WRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       658 W~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      +...+..-...|+.+.|...|.+|+..-
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            6777777788899999999999998654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.41  E-value=0.009  Score=66.73  Aligned_cols=167  Identities=11%  Similarity=-0.008  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--C
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--N  207 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~--~  207 (697)
                      .++...+++++...|.++.+|..-.......+           .......+++++..+|+++.+|..-.-.. ...+  +
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l-~~l~~~~  124 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEPN  124 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTCSSCC
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccccc
Confidence            57789999999999999999987776665543           34678899999999999999999877665 5778  7


Q ss_pred             HHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCC
Q 005434          208 VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENT  287 (697)
Q Consensus       208 ~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  287 (697)
                      ++.+...+++++...|.+...|..-.-.-..           ++.                                   
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-----------l~~-----------------------------------  158 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQ-----------AAV-----------------------------------  158 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------TCC-----------------------------------
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------cCC-----------------------------------
Confidence            7999999999999999998888654322111           110                                   


Q ss_pred             CCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-ccc----------CcHHHHHHHHHHH
Q 005434          288 DGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLA----------QSDDMHDKILSDM  356 (697)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~----------~~~~~~~~il~~~  356 (697)
                                          ..+.+...++++++..|.+...|.....++... +..          ...+.+-..+.++
T Consensus       159 --------------------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          159 --------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             --------------------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred             --------------------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence                                112445666777777788777776665555442 110          1124555667888


Q ss_pred             HhhCCCChhhHHHHHHhh
Q 005434          357 QRDFLVDPKYWDWLARLK  374 (697)
Q Consensus       357 ~~~~p~~~~~w~~~a~~~  374 (697)
                      +...|++...|.++.-..
T Consensus       219 i~~~P~~~saW~y~~~ll  236 (567)
T 1dce_A          219 FFTDPNDQSAWFYHRWLL  236 (567)
T ss_dssp             HHHCSSCSHHHHHHHHHH
T ss_pred             HhhCCCCccHHHHHHHHH
Confidence            999999999999876655

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.39  E-value=0.0016  Score=56.38  Aligned_cols=92  Identities=13%  Similarity=0.096  Sum_probs=70.2

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGL---VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYST  664 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~f  664 (697)
                      ....|++++|...|++++...|.+.   ..+...+......+      +.+.|...|++++...|.+   +..+......
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR------NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            3457888888888888888777665   45555555555666      7888888888888888866   5667777777


Q ss_pred             HHhcCChhhHHHHHHHHHhhcCCc
Q 005434          665 ETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       665 E~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      -...|+.+.|...|+++++..|++
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCC
Confidence            778888888888888888887655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.38  E-value=0.00096  Score=53.69  Aligned_cols=80  Identities=11%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434          156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (697)
Q Consensus       156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~  234 (697)
                      .+...|..........+ +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|.+...|.....
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34667777777766666 578999999999999999999999999886 7999999999999999999999888877665


Q ss_pred             HH
Q 005434          235 ME  236 (697)
Q Consensus       235 ~E  236 (697)
                      ..
T Consensus        86 ~~   87 (91)
T 1na3_A           86 AK   87 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.38  E-value=0.0011  Score=66.69  Aligned_cols=192  Identities=8%  Similarity=-0.091  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhccCCC-------------------
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRY-------VTLYLQLGKLDEARKLAAKLCSGKLSD-------------------  495 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y-------~~l~~~~~~~~~A~~l~~~al~~~~P~-------------------  495 (697)
                      ++...|+..|.+++..+|...+.|...       ...+...+...++...+.+++ ..-|.                   
T Consensus        20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l-~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV-QISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT-TCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh-cCChhhhhhhhccCCccccccccc
Confidence            446789999999999999999999998       677777766667666677776 43222                   


Q ss_pred             --cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhh
Q 005434          496 --SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVA  572 (697)
Q Consensus       496 --~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-~~~~~l~~~a~~~~~  572 (697)
                        -.+++..|+.++...+.          .+.+.++|..++..-|.. . ..|..-+-++.... +.+...|+.+...  
T Consensus        99 ~~r~dl~LayA~~L~~~g~----------y~eA~~~l~~~~~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~--  164 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGN----------YADAMEALEAAPVAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKW--  164 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTC----------HHHHHHHHTSSCCTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGC--
T ss_pred             CCHhHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhcc--
Confidence              15788889988887774          788888888776544432 2 34443332222222 3444444433210  


Q ss_pred             hCCCCCCCCCh----HHHHHH-HHHHhCCHHHHHHHHHHHHhCC--CC-CHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434          573 KDGGGESGFSL----PSAIIN-LVIQKDGIQQAREMYKRFLALP--RP-GLVLYQNCIELENNLASVGDKDSLVNARKLF  644 (697)
Q Consensus       573 ~~~~~~~~~~l----~~~yl~-~~~~~~~~~~AR~iy~~~i~~~--p~-~~~~~~~~i~lE~~~~~~~~~~~~~raR~ly  644 (697)
                             ....    ...|+- .+...|.+++|...|++++..+  |. ....+......-..+|      ..+.|+.+|
T Consensus       165 -------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG------r~deA~~~l  231 (282)
T 4f3v_A          165 -------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG------NESAAVALL  231 (282)
T ss_dssp             -------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT------CHHHHHHHH
T ss_pred             -------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC------CHHHHHHHH
Confidence                   0111    111222 2556799999999999998655  33 2334555555555677      789999999


Q ss_pred             HHHHhhCCCCchHHHHHH
Q 005434          645 ESALATYDQNTSLWRDYY  662 (697)
Q Consensus       645 e~al~~~~~~~~lW~~y~  662 (697)
                      ++++...|. +.+|....
T Consensus       232 ~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          232 EWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHSCC-HHHHHHHH
T ss_pred             HHHHhcCCc-HHHHHHHh
Confidence            999998887 76665443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.32  E-value=0.0087  Score=60.83  Aligned_cols=181  Identities=14%  Similarity=0.043  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHhcccCCCCCCccchH
Q 005434          447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS--DSVQLWLLRISVEIRCVTRNSFSPSKADIL  524 (697)
Q Consensus       447 ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P--~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~  524 (697)
                      +...+++.+...+.++......+..+...|++++|.+++.+++ ...|  .+.+.....+++.+..+.          .+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r----------~d  153 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNN----------VS  153 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTC----------HH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCC----------HH
Confidence            3455566555544555556677888888999999999999998 6776  789999999999988774          78


Q ss_pred             HHHHHHHHHHhhcCh----hhhH--HHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhCCCCCCCCC--hHHHHHHHHHHh
Q 005434          525 SIFELLKCILTKVSA----LESE--SLWLMALKFFMNQ--KHYFDKLVEIALISVAKDGGGESGFS--LPSAIINLVIQK  594 (697)
Q Consensus       525 ~~~~~f~~al~~~p~----~~~~--~lW~~y~~~~~~~--~~~~~~l~~~a~~~~~~~~~~~~~~~--l~~~yl~~~~~~  594 (697)
                      .+++.+++..+.-|.    .++.  .+-..|+.+....  ...+-.+|+.+...+         +.  -....+.-..+.
T Consensus       154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---------p~~~~~~lLln~~~~~  224 (310)
T 3mv2_B          154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---------PTWKTQLGLLNLHLQQ  224 (310)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---------CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---------CCcccHHHHHHHHHHc
Confidence            888888887554441    1221  1212233333221  123445555543221         11  001111123345


Q ss_pred             CCHHHHHHHHHHHHhCC----------CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434          595 DGIQQAREMYKRFLALP----------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (697)
Q Consensus       595 ~~~~~AR~iy~~~i~~~----------p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~  655 (697)
                      |++++|..+++.+++..          |.+.......|-+-..+|      +  .+..+++++.+..|.++
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg------k--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG------L--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT------C--TTHHHHHHHHHTTCCCH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC------h--HHHHHHHHHHHhCCCCh
Confidence            66666666666555432          334445556666666555      3  55566666666655544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.30  E-value=0.0015  Score=69.04  Aligned_cols=101  Identities=8%  Similarity=-0.030  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVM----------------RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (697)
Q Consensus       140 ~~r~~~iyeral~----------------~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~  202 (697)
                      ...+...|++|+.                ..|.+..+|..++..+.+.+ +..+...|++++..+|.++.+|...+....
T Consensus       239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  318 (370)
T 1ihg_A          239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ  318 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            4567788999998                67778899999998888777 578999999999999999999999999886


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHH
Q 005434          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLN  241 (697)
Q Consensus       203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~  241 (697)
                       ..|+.+.|...|+++++..|++..+|..+..+....+.
T Consensus       319 -~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          319 -GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             -HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             -HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             79999999999999999999999999888877665443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.28  E-value=0.0019  Score=56.43  Aligned_cols=87  Identities=10%  Similarity=0.022  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-------GVWIYAAAWEFDHNLNVTAA  211 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~-------~lW~~~a~~e~~~~~~~~~a  211 (697)
                      ...+...|++|+...|++...|..........| +..+...|++++.+.|.++       .+|...+.... ..|+++.|
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A  102 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCCHHHH
Confidence            567889999999999999999999988888777 6789999999999988754       35555566663 78999999


Q ss_pred             HHHHHHhhhhCCCCHHH
Q 005434          212 RALMQNGLRVCPTSEEL  228 (697)
Q Consensus       212 R~~~~r~l~~~p~~~~l  228 (697)
                      ...|+++|..+|+ +++
T Consensus       103 ~~~~~kal~~~~~-~~~  118 (127)
T 4gcn_A          103 VQWFHRSLSEFRD-PEL  118 (127)
T ss_dssp             HHHHHHHHHHSCC-HHH
T ss_pred             HHHHHHHHhhCcC-HHH
Confidence            9999999999986 444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.26  E-value=0.01  Score=60.55  Aligned_cols=193  Identities=9%  Similarity=-0.037  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHHHHcCC--------Cc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---c---HHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGC--------LT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---S---VQLWLLRI  504 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~--------~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~---~---~~lW~~~i  504 (697)
                      +..+.+..++++|....+        ..   ...+...+..+...|++++|...+.+++ ...+.   .   ...+....
T Consensus         5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence            455566666666655321        11   1344555677888899999999999988 44332   1   23444444


Q ss_pred             HHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCC
Q 005434          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGE  578 (697)
Q Consensus       505 ~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~----~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~  578 (697)
                      .+....+          +.+++.+.|++|+...+.    ......+......+.. +  +.+...|++|+...+......
T Consensus        84 ~~~~~~g----------~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           84 MMLKDLQ----------RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHTT----------CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCC----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            4444444          367788889999875421    1123344444444444 4  567788999988765432100


Q ss_pred             CCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434          579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       579 ~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      ............+...|++++|...|++++...|..      ...+...+.....++      +.+.|...|++++ ..|
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA------DYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHT-TST
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHh-CCC
Confidence            001112223444567899999999999999864432      124445555555567      8999999999999 877


Q ss_pred             C
Q 005434          653 Q  653 (697)
Q Consensus       653 ~  653 (697)
                      .
T Consensus       226 ~  226 (307)
T 2ifu_A          226 G  226 (307)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00035  Score=72.89  Aligned_cols=124  Identities=15%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHH---------------HHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIF---------------DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw---------------~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~a  454 (697)
                      .++++.|...|++|+...|....+               ..|..+-.-..               ..+..+.|...|++|
T Consensus       192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~---------------~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI---------------KLKRYDEAIGHCNIV  256 (338)
T ss_dssp             SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH---------------TTTCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHH
Confidence            477899999999999988764311               01211111111               124578899999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       455 l~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      +..+|.+...|...+..+...|++++|...+++++ ...|++..+|.....+......         ..+..+..|.+++
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-~l~p~~~~a~~~L~~l~~~~~~---------~~~~a~~~~~~~l  326 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ-KYAPDDKAIRRELRALAEQEKA---------LYQKQKEMYKGIF  326 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-C-------------------------------------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999 7889988888765554332221         2345566788877


Q ss_pred             hhcC
Q 005434          535 TKVS  538 (697)
Q Consensus       535 ~~~p  538 (697)
                      ...|
T Consensus       327 ~~~p  330 (338)
T 2if4_A          327 KGKD  330 (338)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            6554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.25  E-value=0.0011  Score=72.03  Aligned_cols=123  Identities=10%  Similarity=0.034  Sum_probs=89.6

Q ss_pred             CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-------------HHHHHHHHHHHHhcC
Q 005434          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAP  426 (697)
Q Consensus       360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-------------lw~~yi~~~~~~~~~  426 (697)
                      .|+....|...+..+..             .++++.|...|++|++..|...             ....|...-.-.+  
T Consensus       264 ~~~~a~~~~~~G~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~--  328 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFK-------------GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL--  328 (457)
T ss_dssp             HHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH--
Confidence            34445567677776654             4789999999999999877641             0122222211111  


Q ss_pred             CcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434          427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV  506 (697)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l  506 (697)
                                   ..+..+.|...|++|+..+|.+...|...+..+...|++++|...+++|+ ...|++...|.....+
T Consensus       329 -------------~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          329 -------------KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKAARLQISMC  394 (457)
T ss_dssp             -------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC----CHHHHHHHH
T ss_pred             -------------HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence                         13568899999999999999999999999999999999999999999999 8899988888777766


Q ss_pred             HHHhc
Q 005434          507 EIRCV  511 (697)
Q Consensus       507 ~~~~~  511 (697)
                      ....+
T Consensus       395 ~~~~~  399 (457)
T 1kt0_A          395 QKKAK  399 (457)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.23  E-value=0.0016  Score=69.35  Aligned_cols=230  Identities=12%  Similarity=0.078  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      .|+++.|+..++.+.+..+.+.+....+....+                  .+.+.++...|+     .| +...|..-+
T Consensus        74 ~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K------------------lg~l~e~e~f~~-----~p-n~~a~~~IG  129 (449)
T 1b89_A           74 SGNWEELVKYLQMARKKARESYVETELIFALAK------------------TNRLAELEEFIN-----GP-NNAHIQQVG  129 (449)
T ss_dssp             -----------------------------------------------------CHHHHTTTTT-----CC----------
T ss_pred             CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH------------------hCCHHHHHHHHc-----CC-cHHHHHHHH
Confidence            477888888888888765443222221111111                  112233333222     23 234666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA  549 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y  549 (697)
                      +.+-..|.+++|+..|.++         ..|...+..+.+.|          +.+.+.+.|++|.       ....|...
T Consensus       130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg----------~yq~AVea~~KA~-------~~~~Wk~v  183 (449)
T 1b89_A          130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG----------EYQAAVDGARKAN-------STRTWKEV  183 (449)
T ss_dssp             -------CTTTHHHHHHHT---------TCHHHHHHHHHTTT----------CHHHHHHHHHHHT-------CHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc----------cHHHHHHHHHHcC-------CchhHHHH
Confidence            7777777777777777654         25666666666655          3666767777761       24567665


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccC
Q 005434          550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLA  629 (697)
Q Consensus       550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~  629 (697)
                      +.-....++     |+.|.. |.....  ..+.-....+.++.+.|.+++|..++++++...+....+|....-+..+..
T Consensus       184 ~~aCv~~~e-----f~lA~~-~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          184 CFACVDGKE-----FRLAQM-CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HHHHHHTTC-----HHHHHH-TTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCc-----HHHHHH-HHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            543333331     222221 111110  011112234556678899999999999999998888888888888877664


Q ss_pred             CCCCcccHHHHHHHHHHHHhhCC-----CCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 005434          630 SVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKLGTSETATAVYWRA  681 (697)
Q Consensus       630 ~~~~~~~~~raR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~~a~~vy~ra  681 (697)
                      .    +.+...-++|...+...+     ....+|..+.-+-..+|+.++|...+-..
T Consensus       256 p----~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          256 P----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             H----HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             H----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            1    144444455655555444     45689999999999999999887755433

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.01  Score=55.63  Aligned_cols=140  Identities=12%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             chHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhhh----H----HHH-HHHHHHHHhhhhCCCCCCCCChHHHHHHH
Q 005434          522 DILSIFELLKCILTK--VSALESESLWLMALKFFMNQK----H----YFD-KLVEIALISVAKDGGGESGFSLPSAIINL  590 (697)
Q Consensus       522 ~~~~~~~~f~~al~~--~p~~~~~~lW~~y~~~~~~~~----~----~~~-~l~~~a~~~~~~~~~~~~~~~l~~~yl~~  590 (697)
                      .+...+..|++.|..  -...+-+.+|..|+.+.+..-    .    .+- .++++++..+.....-.+.+..-..|+.+
T Consensus         7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y   86 (202)
T 3esl_A            7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY   86 (202)
T ss_dssp             HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence            467778889999987  334445789999999876541    1    233 78888888764332111122222223333


Q ss_pred             HHH--hCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHH
Q 005434          591 VIQ--KDGIQQAREMYKRFLALP--RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTE  665 (697)
Q Consensus       591 ~~~--~~~~~~AR~iy~~~i~~~--p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE  665 (697)
                      +..  .++...++.+|.-+....  -....+|..|+.+....+      +..+|.++|+.+++... ....|-..|.+|+
T Consensus        87 a~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~  160 (202)
T 3esl_A           87 INLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ------FFLEAKVLLELGAENNCRPYNRLLRSLSNYE  160 (202)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred             HHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            222  334556666766665421  122346677776666666      66777777777776544 2235666667776


Q ss_pred             Hh
Q 005434          666 TK  667 (697)
Q Consensus       666 ~~  667 (697)
                      .+
T Consensus       161 ~R  162 (202)
T 3esl_A          161 DR  162 (202)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.22  E-value=0.00045  Score=57.65  Aligned_cols=71  Identities=10%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434          153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (697)
Q Consensus       153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~  224 (697)
                      ..|++...|...+......| +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++++..|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhc
Confidence            46999999999999888877 578999999999999999999999999885 899999999999999998775

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.21  E-value=0.007  Score=54.19  Aligned_cols=124  Identities=11%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434          523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQK----HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (697)
Q Consensus       523 ~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~----~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~  598 (697)
                      ...++..|+..|......+-+.+|..|+.+.+.+-    ..+..++++++..+.....    .                 
T Consensus         6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~----Y-----------------   64 (152)
T 4a1g_A            6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKK----Y-----------------   64 (152)
T ss_dssp             HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGG----G-----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhccccc----c-----------------
Confidence            35577779999887766666888999998876531    2345566666655432110    0                 


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHH
Q 005434          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATA  676 (697)
Q Consensus       599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~  676 (697)
                                ...|--+.+|+.||++   ..         ..+++|..+.....  ....+|..|+.+.+..|+.+.|..
T Consensus        65 ----------knD~RyLklWl~ya~~---~~---------dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~  122 (152)
T 4a1g_A           65 ----------HNDPRFISYCLKFAEY---NS---------DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASA  122 (152)
T ss_dssp             ----------TTCHHHHHHHHHHHTT---BS---------CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------cCCHHHHHHHHHHHHh---cC---------CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                      0001113577777744   11         26778887776543  445888888888888888888888


Q ss_pred             HHHHHHhhcCCcc
Q 005434          677 VYWRARKTLKDST  689 (697)
Q Consensus       677 vy~ral~~~~~~~  689 (697)
                      ||.+|++.-..|.
T Consensus       123 Vy~~Gi~~~A~P~  135 (152)
T 4a1g_A          123 VLQRGIQNQAEPR  135 (152)
T ss_dssp             HHHHHHHTTCBSH
T ss_pred             HHHHHHHcCCccH
Confidence            8888888776664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.19  E-value=0.0024  Score=65.22  Aligned_cols=190  Identities=10%  Similarity=-0.011  Sum_probs=117.0

Q ss_pred             cCCHHHHHHHHHHHhhccCCC-----------cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh---
Q 005434          475 LGKLDEARKLAAKLCSGKLSD-----------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL---  540 (697)
Q Consensus       475 ~~~~~~A~~l~~~al~~~~P~-----------~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~---  540 (697)
                      .|++++|.+++++|. ...|.           ....+.....+....+          +.+.+.+.|.+++...+..   
T Consensus         4 ~~~~~eA~~~~~~a~-k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~   72 (307)
T 2ifu_A            4 AQKISEAHEHIAKAE-KYLKTSFMKWKPDYDSAASEYAKAAVAFKNAK----------QLEQAKDAYLQEAEAHANNRSL   72 (307)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchHHHHHHHHHHHH-HHccccccCCCCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHcCCH
Confidence            456677777777665 22221           1223333333333333          4677888888888754321   


Q ss_pred             -hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH---HHHhCCHHHHHHHHHHHHhCCCCC
Q 005434          541 -ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRFLALPRPG  614 (697)
Q Consensus       541 -~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~---~~~~~~~~~AR~iy~~~i~~~p~~  614 (697)
                       .....+......+...+  +.+...|++|+........   .......|...   ... |++++|...|++++...|..
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence             12233333333333322  4567778888876533211   11122233222   334 99999999999999875532


Q ss_pred             ------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc------hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005434          615 ------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT------SLWRDYYSTETKLGTSETATAVYWRAR  682 (697)
Q Consensus       615 ------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~------~lW~~y~~fE~~~G~~~~a~~vy~ral  682 (697)
                            ...+...+.+...++      +.+.|...|++++...+.+.      ..|...+......|+.+.|...|++++
T Consensus       149 ~~~~~~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          149 ERLRQAAELIGKASRLLVRQQ------KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence                  346667777777788      89999999999999876322      356656666666799999999999999


Q ss_pred             hhcC
Q 005434          683 KTLK  686 (697)
Q Consensus       683 ~~~~  686 (697)
                       ..|
T Consensus       223 -~~p  225 (307)
T 2ifu_A          223 -SIP  225 (307)
T ss_dssp             -TST
T ss_pred             -CCC
Confidence             554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.18  E-value=0.0025  Score=69.75  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++|+...|++...|...+....+.+ +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETV  100 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            567889999999999999999999999888877 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRM  235 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~  235 (697)
                      ++..|++...|..+...
T Consensus       101 l~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1          101 VKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHSTTCTTHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            99999988888777655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.17  E-value=0.001  Score=69.34  Aligned_cols=96  Identities=11%  Similarity=0.104  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDI-----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWE  201 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~-----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e  201 (697)
                      ...+...|++|+...|++.                 .+|..++..+.+.+ +..+...|+++|..+|+++.+|...+...
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~  274 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK  274 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4567889999999999876                 48888888777766 67899999999999999999999999998


Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434          202 FDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       202 ~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      . ..|+++.|+..|+++++..|++..+|..+..+.
T Consensus       275 ~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          275 A-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             H-TTTCHHHHHHHHHHTTC----------------
T ss_pred             H-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            6 899999999999999999999888888777663

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.17  E-value=0.0024  Score=64.09  Aligned_cols=143  Identities=10%  Similarity=-0.114  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcC
Q 005434          328 NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV  407 (697)
Q Consensus       328 ~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~  407 (697)
                      +++..|...+..-+   ..+.+..+++.+....|++. ..+.++...+.             .++++.|...|+.++...
T Consensus       103 dl~LayA~~L~~~g---~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~-------------~~r~~dA~~~l~~a~~~~  165 (282)
T 4f3v_A          103 AITMGFAACEAAQG---NYADAMEALEAAPVAGSEHL-VAWMKAVVYGA-------------AERWTDVIDQVKSAGKWP  165 (282)
T ss_dssp             HHHHHHHHHHHHHT---CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH-------------TTCHHHHHHHHTTGGGCS
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH-------------cCCHHHHHHHHHHhhccC
Confidence            34455544444332   35677777777777777666 66666666654             478999999998775533


Q ss_pred             CchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHhcCCHHHHHHH
Q 005434          408 PSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG--CL-TEDIAHRYVTLYLQLGKLDEARKL  484 (697)
Q Consensus       408 ~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~--~~-~~~lw~~y~~l~~~~~~~~~A~~l  484 (697)
                      +.  ....-+.+.......             ..+..+.|...|++++...  |. ..+.++..+..+...|+.++|+.+
T Consensus       166 d~--~~~~~a~~~LG~al~-------------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~  230 (282)
T 4f3v_A          166 DK--FLAGAAGVAHGVAAA-------------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL  230 (282)
T ss_dssp             CH--HHHHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             Cc--ccHHHHHHHHHHHHH-------------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            21  111112222221110             1356789999999998653  55 667999999999999999999999


Q ss_pred             HHHHhhccCCCcHHHHHHHH
Q 005434          485 AAKLCSGKLSDSVQLWLLRI  504 (697)
Q Consensus       485 ~~~al~~~~P~~~~lW~~~i  504 (697)
                      +++++ ...|. ...|....
T Consensus       231 l~~a~-a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          231 LEWLQ-TTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHH-HHSCC-HHHHHHHH
T ss_pred             HHHHH-hcCCc-HHHHHHHh
Confidence            99999 78898 88776543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.17  E-value=0.0024  Score=54.84  Aligned_cols=91  Identities=14%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC-------chHHHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN-------TSLWRDYYS  663 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~-------~~lW~~y~~  663 (697)
                      ....|++++|...|++++...|.....+...+.+....+      +.+.|...|++++...+.+       +.+|...+.
T Consensus        14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   87 (131)
T 1elr_A           14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG------DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc------cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence            345778888888888888888777777777777766677      7888888888888877643       567777777


Q ss_pred             HHHhcCChhhHHHHHHHHHhhcCC
Q 005434          664 TETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       664 fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      .-...|+.+.|...|.+++...++
T Consensus        88 ~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           88 SYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCC
Confidence            777788888888888888876654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.15  E-value=0.0055  Score=57.76  Aligned_cols=102  Identities=12%  Similarity=0.001  Sum_probs=80.6

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-----------------HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-----------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-----------------lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye  452 (697)
                      .++++.|...|++++...|...                 +|........                  ..+..+.|...|+
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------------~~~~~~~A~~~~~  112 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN------------------KNKDYPKAIDHAS  112 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH------------------HhcCHHHHHHHHH
Confidence            4779999999999998766432                 2221111111                  1355789999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434          453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (697)
Q Consensus       453 ~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (697)
                      +++..+|.++..|...+..+...|++++|...+++++ ...|.+..+|.....+....
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA-SLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 78899988887766655544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.14  E-value=0.0067  Score=57.54  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=83.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-----------
Q 005434          587 IINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-----------  655 (697)
Q Consensus       587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-----------  655 (697)
                      ........|++++|...|++++...|.....+...+.+....+      +.+.|...|++++...|.+.           
T Consensus        43 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE------KYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc------cHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            3444567899999999999999999988888888888888888      89999999999999888655           


Q ss_pred             -----hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          656 -----SLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       656 -----~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                           .+|......-...|+.+.|...+++|++..++.
T Consensus       117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                 888888888888999999999999999887644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.11  E-value=0.0025  Score=52.53  Aligned_cols=77  Identities=12%  Similarity=-0.062  Sum_probs=66.6

Q ss_pred             cCCCHHHHHHHHHHHHHh-c---CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434          154 FKGDIELWFKYMEFCRQR-K---NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (697)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~-~---~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW  229 (697)
                      .|.+.++|..|++...-. +   ...+..+|+++|..+|+++..++..+...+ ..|++..|...+++.+...|.  ..|
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~--~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDP--NLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCT--TCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--Ccc
Confidence            589999999999987543 3   358999999999999999999999999997 799999999999999999997  455


Q ss_pred             HHHH
Q 005434          230 VEYL  233 (697)
Q Consensus       230 ~~y~  233 (697)
                      ..-+
T Consensus        79 ~~~i   82 (93)
T 3bee_A           79 RVTI   82 (93)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.10  E-value=0.027  Score=62.90  Aligned_cols=181  Identities=12%  Similarity=0.076  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (697)
Q Consensus       346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~  424 (697)
                      .+.+-..++.++...|++...|...+.........   .........++.+...|+++++..|... .|..= .+....+
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~---~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR-~w~l~~l  120 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETE---KSPEESAALVKAELGFLESCLRVNPKSYGTWHHR-CWLLSRL  120 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHTC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccc---cchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHc
Confidence            46677888999999999999998876655321000   0000111238899999999999888764 66532 2323222


Q ss_pred             cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGKLSDSVQLWLLR  503 (697)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~-~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (697)
                      .               ....+++...++++++.+|.+...|..-.-.+...| ..+++.+.+.+++ ..+|.+...|..+
T Consensus       121 ~---------------~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p~n~saW~~r  184 (567)
T 1dce_A          121 P---------------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNFSNYSSWHYR  184 (567)
T ss_dssp             S---------------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTCCCHHHHHHH
T ss_pred             c---------------cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCCCCccHHHHH
Confidence            1               013578999999999999999999988777778888 8999999999999 8999999999988


Q ss_pred             HHHHHHhcccCCC----CCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434          504 ISVEIRCVTRNSF----SPSKADILSIFELLKCILTKVSALESESLWLM  548 (697)
Q Consensus       504 i~l~~~~~~~~~~----~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~  548 (697)
                      ..+..........    ......+++..+.+.+|+..-|...  ..|..
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y  231 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFY  231 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHH
T ss_pred             HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc--cHHHH
Confidence            8777664221000    0011246778888999998777654  56863

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.02  E-value=0.024  Score=56.54  Aligned_cols=91  Identities=12%  Similarity=0.008  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC-CchHHHHHHHHHHh-cCCh
Q 005434          596 GIQQAREMYKRFLALPRP--GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETK-LGTS  671 (697)
Q Consensus       596 ~~~~AR~iy~~~i~~~p~--~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~-~~~lW~~y~~fE~~-~G~~  671 (697)
                      ....|+...++++++.|.  ....|..+.-+...+. +--.++.++|+.+|++|+..+|. +.+....|.+|-.. .|+.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP-p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP-ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC-TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC-CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            467889999999998887  4447777777776652 10112889999999999999994 58999999999988 4999


Q ss_pred             hhHHHHHHHHHhhcCC
Q 005434          672 ETATAVYWRARKTLKD  687 (697)
Q Consensus       672 ~~a~~vy~ral~~~~~  687 (697)
                      +.+...+++|++.-+.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999987665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.02  E-value=0.0047  Score=56.06  Aligned_cols=94  Identities=10%  Similarity=-0.014  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL----------DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~----------~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                      +..+.|+..|++|+..+|.+++.|..|...+...+++          ++|...+++|+ ...|+..+.|...-......+
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHhc
Confidence            5578899999999999999999999999999888764          59999999999 899999998877666665443


Q ss_pred             ccCCCCCCc----cchHHHHHHHHHHHhhcCh
Q 005434          512 TRNSFSPSK----ADILSIFELLKCILTKVSA  539 (697)
Q Consensus       512 ~~~~~~~~~----~~~~~~~~~f~~al~~~p~  539 (697)
                      ..   +|+.    .+++++.+.|++|+..-|.
T Consensus        95 ~l---~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           95 FL---TPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HH---CCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cc---CcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            11   1210    2578888899999987664

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.96  E-value=0.07  Score=56.84  Aligned_cols=236  Identities=10%  Similarity=0.029  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ..++...++++     +...+|...+.-..+.+ ...+.+.|.++     .++..|...+.-. +..|+++.|..+++.+
T Consensus        19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~a-e~~g~~EeAi~yl~~a   87 (449)
T 1b89_A           19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQMA   87 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHH-HhCCCHHHHHHHHHHH
Confidence            66777777777     33469998888777766 56788888764     3566777777766 4789999999999998


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      .+..|+ +.+....+..-.+.+...+    +..                         ++.   .               
T Consensus        88 rk~~~~-~~i~~~Li~~Y~Klg~l~e----~e~-------------------------f~~---~---------------  119 (449)
T 1b89_A           88 RKKARE-SYVETELIFALAKTNRLAE----LEE-------------------------FIN---G---------------  119 (449)
T ss_dssp             ----------------------CHHH----HTT-------------------------TTT---C---------------
T ss_pred             HHhCcc-chhHHHHHHHHHHhCCHHH----HHH-------------------------HHc---C---------------
Confidence            886554 3333333222211111000    000                         000   0               


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                                               |+ ...|...-+.+..-   +..+.+...+.++        ..|..+|.....  
T Consensus       120 -------------------------pn-~~a~~~IGd~~~~~---g~yeeA~~~Y~~a--------~n~~~LA~~L~~--  160 (449)
T 1b89_A          120 -------------------------PN-NAHIQQVGDRCYDE---KMYDAAKLLYNNV--------SNFGRLASTLVH--  160 (449)
T ss_dssp             -------------------------C--------------------CTTTHHHHHHHT--------TCHHHHHHHHHT--
T ss_pred             -------------------------Cc-HHHHHHHHHHHHHc---CCHHHHHHHHHHh--------hhHHHHHHHHHH--
Confidence                                     00 00111111111110   1223344444433        356677776654  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG  458 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~  458 (697)
                                 .++++.|.+.|+++    ...+.|...+..|...                  +..+.|...... +.  
T Consensus       161 -----------Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~------------------~ef~lA~~~~l~-L~--  204 (449)
T 1b89_A          161 -----------LGEYQAAVDGARKA----NSTRTWKEVCFACVDG------------------KEFRLAQMCGLH-IV--  204 (449)
T ss_dssp             -----------TTCHHHHHHHHHHH----TCHHHHHHHHHHHHHT------------------TCHHHHHHTTTT-TT--
T ss_pred             -----------hccHHHHHHHHHHc----CCchhHHHHHHHHHHc------------------CcHHHHHHHHHH-HH--
Confidence                       47799999999999    3456788877666542                  224444332222 21  


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                       ..++--...+.++.+.|.+++|..++++++ +.-|....+|....-+..+..
T Consensus       205 -~~ad~l~~lv~~Yek~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          205 -VHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTTC
T ss_pred             -hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhcC
Confidence             234444467788999999999999999999 666888999998877776653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.94  E-value=0.054  Score=51.67  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHH
Q 005434          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS  525 (697)
Q Consensus       446 ~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~  525 (697)
                      .+...|+++.+.  .++..+...+.++...+++++|...+++++.   +.+...+.....+... +    +++  .+.++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g~~~a~~~lg~~y~~-~----g~~--~~~~~   71 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QGDGDALALLAQLKIR-N----PQQ--ADYPQ   71 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHTTS-S----TTS--CCHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHc-C----CCC--CCHHH
Confidence            356778888875  5788888899999999999999999999984   2445555544444433 2    111  15788


Q ss_pred             HHHHHHHHHhh
Q 005434          526 IFELLKCILTK  536 (697)
Q Consensus       526 ~~~~f~~al~~  536 (697)
                      +.+.|++|+..
T Consensus        72 A~~~~~~A~~~   82 (212)
T 3rjv_A           72 ARQLAEKAVEA   82 (212)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            88889998653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0064  Score=50.69  Aligned_cols=68  Identities=19%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 005434          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS  225 (697)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~  225 (697)
                      +...|..........| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc
Confidence            3556777777766666 578999999999999999999999999886 7999999999999999999986

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.88  E-value=0.042  Score=55.80  Aligned_cols=180  Identities=11%  Similarity=0.042  Sum_probs=112.3

Q ss_pred             HhHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC------CcHHHH--HHHHHHHHHh
Q 005434          441 EHYISHLLTVYEKAEAMGC--LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS------DSVQLW--LLRISVEIRC  510 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~--~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P------~~~~lW--~~~i~l~~~~  510 (697)
                      .+..+.|..++.+++..+|  .+.+.....++++++.|+++.|+++++++. ...|      ++..+.  ..|+.+... 
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~~~d~~~~~d~~l~~Laea~v~l~~g-  190 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT-NAIEDTVSGDNEMILNLAESYIKFATN-  190 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCccccccchHHHHHHHHHHHHHHhC-
Confidence            3668999999999999887  788999999999999999999999999987 6677      232222  223333322 


Q ss_pred             cccCCCCCCccchHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCC----CCCCCChHH
Q 005434          511 VTRNSFSPSKADILSIFELLKCILTKVSA-LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGG----GESGFSLPS  585 (697)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~f~~al~~~p~-~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~----~~~~~~l~~  585 (697)
                      +.         +...+..+|++.....|. ....-+|..++  -..+-+.++.+++..+..-+.-..    .+..+....
T Consensus       191 ~~---------~~q~A~~~f~El~~~~p~~~~~~lLln~~~--~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          191 KE---------TATSNFYYYEELSQTFPTWKTQLGLLNLHL--QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             CS---------TTTHHHHHHHHHHTTSCSHHHHHHHHHHHH--HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             Cc---------cHHHHHHHHHHHHHhCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            11         367889999998877764 12234554221  122225677777754432111000    001122221


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434          586 AIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       586 ~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      .-+.+....|+  .|..+++++....|..+-+ .                +....-+.|++++..+.
T Consensus       260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i-~----------------d~~~k~~~Fd~~~~ky~  307 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFI-K----------------HHQEIDAKFDELVRKYD  307 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH-H----------------HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCh--HHHHHHHHHHHhCCCChHH-H----------------HHHHHHHHHHHHHHHhc
Confidence            22334445676  9999999999998876543 1                33444556777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.88  E-value=0.0033  Score=57.15  Aligned_cols=69  Identities=10%  Similarity=-0.009  Sum_probs=47.6

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-SLWRDYYSTE  665 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-~lW~~y~~fE  665 (697)
                      ....|+++.|...|++++...|.....+...+.....++      +.+.|...|++++...|.++ .++.......
T Consensus        73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAW------KLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            445677777777777777777777776666666666666      77777777777777777665 5554444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.86  E-value=0.0051  Score=55.97  Aligned_cols=89  Identities=13%  Similarity=0.018  Sum_probs=76.2

Q ss_pred             HhHHHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcc-------CCCcHHHH-
Q 005434          441 EHYISHLLTVYEKAEAMGCL-------TED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGK-------LSDSVQLW-  500 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~-------~~~-----lw~~y~~l~~~~~~~~~A~~l~~~al~~~-------~P~~~~lW-  500 (697)
                      .+..+.|...|++|+..+|.       +..     .|..-+..+...|++++|...+++|+ ..       .|+....| 
T Consensus        24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCchHHHHH
Confidence            35688999999999999888       433     99999999999999999999999999 78       99999999 


Q ss_pred             ---HHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          501 ---LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       501 ---~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                         ......+...+          +.+++.+.|++|+...|..
T Consensus       103 ~~~~~rG~aL~~lg----------r~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A          103 SAVYSRALALDGLG----------RGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHCC----------CHHHHHHHHHHHHhcCCCc
Confidence               87777776666          4788999999999876643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.85  E-value=0.0051  Score=64.86  Aligned_cols=105  Identities=12%  Similarity=0.020  Sum_probs=78.9

Q ss_pred             chHHHHHHHHHHHHhhcCCch--------------hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSS--------------MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~--------------~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al  455 (697)
                      .++++.|...|++|++..+..              .....|...-.-.+               ..+..+.|...|++|+
T Consensus       236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL---------------KMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH---------------hccCHHHHHHHHHHHH
Confidence            477999999999999843221              01112222111111               1355789999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434          456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (697)
Q Consensus       456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (697)
                      ..+|.++..|...+..+...|++++|...+++|+ ...|++..+|.....+....
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 78999988887766555443

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.81  E-value=0.0061  Score=58.11  Aligned_cols=98  Identities=10%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             CCChHHHHHHHHHHh---CC--HHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434          580 GFSLPSAIINLVIQK---DG--IQQAREMYKRFLALPRPG---------LVLYQNCIELENNLASVGDKDSLVNARKLFE  645 (697)
Q Consensus       580 ~~~l~~~yl~~~~~~---~~--~~~AR~iy~~~i~~~p~~---------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye  645 (697)
                      ...+|..|+.|...+   |+  -..-..++++|+..+-..         +.+|+.||++   .         +..+.+|.
T Consensus        71 PL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---------~~p~~if~  138 (223)
T 4aez_C           71 PLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---------DEPVELFS  138 (223)
T ss_dssp             THHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---------SCHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---------CCHHHHHH
Confidence            344555566665543   11  112345677776643322         4578888854   1         25667888


Q ss_pred             HHHhhCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434          646 SALATYD--QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST  689 (697)
Q Consensus       646 ~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~  689 (697)
                      .+.....  ....+|..|+.+-+..|+.+.|..||.+|++.-..|.
T Consensus       139 ~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~  184 (223)
T 4aez_C          139 FLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF  184 (223)
T ss_dssp             HHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred             HHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            8887644  4568999999988888999999999999988876664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.039  Score=58.61  Aligned_cols=201  Identities=10%  Similarity=-0.018  Sum_probs=124.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcH-----------------HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSV-----------------QLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----------------~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~  531 (697)
                      ++-+...|++++|.+.+.+++ ...|...                 ........+....|          +.+++.+.|.
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~----------~~~~a~~~~~   79 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG----------AKDKLREFIP   79 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----------CHHHHHHHHH
Confidence            444566788999999998888 4444321                 11222333343444          4678888888


Q ss_pred             HHHhhcCh---hhhHHHHHHHHHHHHh-hh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHH
Q 005434          532 CILTKVSA---LESESLWLMALKFFMN-QK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYK  605 (697)
Q Consensus       532 ~al~~~p~---~~~~~lW~~y~~~~~~-~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~  605 (697)
                      +++...+.   .....+-...+..+.. .+  +.+..+++.++..............+...........|.+++|.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  159 (434)
T 4b4t_Q           80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN  159 (434)
T ss_dssp             HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            88764322   1111111112222221 11  466777888877655443211111222233455667899999999999


Q ss_pred             HHHhCCCC------CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCc-----hHHHHHHHHHHhcCChh
Q 005434          606 RFLALPRP------GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNT-----SLWRDYYSTETKLGTSE  672 (697)
Q Consensus       606 ~~i~~~p~------~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~-----~lW~~y~~fE~~~G~~~  672 (697)
                      +++.....      ...++..-+.+...++      +.++|+.+|++++...+  .++     .++..........|+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~  233 (434)
T 4b4t_Q          160 DLLREFKKLDDKPSLVDVHLLESKVYHKLR------NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK  233 (434)
T ss_dssp             HHHHHHTTSSCSTHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHH
Confidence            99864221      1346666667777777      99999999999998755  222     45566666667789999


Q ss_pred             hHHHHHHHHHhhcC
Q 005434          673 TATAVYWRARKTLK  686 (697)
Q Consensus       673 ~a~~vy~ral~~~~  686 (697)
                      .|...|..+...++
T Consensus       234 ~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          234 TAFSYFFESFESYH  247 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.72  E-value=0.011  Score=49.01  Aligned_cols=71  Identities=10%  Similarity=-0.129  Sum_probs=60.5

Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      .+|.++..|...+..+...|++++|...+++++ ...|++...|..........+          +.+++.+.|++++..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELV-ETDPDYVGTYYHLGKLYERLD----------RTDDAIDTYAQGIEV   70 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999 789999999998888877766          478888999999876


Q ss_pred             cC
Q 005434          537 VS  538 (697)
Q Consensus       537 ~p  538 (697)
                      .|
T Consensus        71 ~~   72 (100)
T 3ma5_A           71 AR   72 (100)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.67  E-value=0.0058  Score=55.58  Aligned_cols=93  Identities=9%  Similarity=-0.085  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHhc-CchHHHHHHHHHHh-------CCCCHHHH----H
Q 005434          140 VARILEIYRLAVMRFKG-------DIE-----LWFKYMEFCRQRK-NGRMKKVLAQVIRF-------HPKVPGVW----I  195 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~-------~~~-----lW~~y~~~~~~~~-~~~~~~~~~ral~~-------~p~~~~lW----~  195 (697)
                      ...+...|++|++..|+       +..     +|..-.....+.| +..+...|+++|.+       +|+++..|    .
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~  106 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY  106 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHH
Confidence            56788999999999999       665     8888888777777 67899999999999       99999999    7


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          196 YAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       196 ~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      .-+.-. ...|+.+.|...|++++...|+...+.....
T Consensus       107 ~rG~aL-~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~  143 (159)
T 2hr2_A          107 SRALAL-DGLGRGAEAMPEFKKVVEMIEERKGETPGKE  143 (159)
T ss_dssp             HHHHHH-HHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             hHHHHH-HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            777766 4799999999999999999997654444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.65  E-value=0.0096  Score=59.35  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             chhHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-----c-CchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcC
Q 005434          136 DFSGVARILEIYRLAVMRFKG--DIELWFKYMEFCRQR-----K-NGRMKKVLAQVIRFHPKV-PGVWIYAAAWEFDHNL  206 (697)
Q Consensus       136 ~~~~~~r~~~iyeral~~~p~--~~~lW~~y~~~~~~~-----~-~~~~~~~~~ral~~~p~~-~~lW~~~a~~e~~~~~  206 (697)
                      .-+....+..+.+|++...|+  +...|..+..+..+.     | .++++..|+|||.++|+. ...++.|+.+.....+
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            345678899999999999999  677999999998873     4 468999999999999974 9999999999864469


Q ss_pred             CHHHHHHHHHHhhhhCCCC---HHHHHHHHHHHH
Q 005434          207 NVTAARALMQNGLRVCPTS---EELWVEYLRMEL  237 (697)
Q Consensus       207 ~~~~aR~~~~r~l~~~p~~---~~lW~~y~~~E~  237 (697)
                      +.+.|+..+++++...|..   ..++....+=+.
T Consensus       255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA  288 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPESVPHNKLLVILSQKRA  288 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHH
Confidence            9999999999999998863   356666554443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.63  E-value=0.19  Score=55.01  Aligned_cols=175  Identities=11%  Similarity=0.059  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh-cChhh
Q 005434          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK-VSALE  541 (697)
Q Consensus       463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~-~p~~~  541 (697)
                      .++..-++...+.|++++|.+++++.....++.+...|...|......+....... ..+++.+.++|++.... +.|. 
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-~~~l~~A~~lf~~M~~~G~~Pd-  104 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-NPGLSRGFDIFKQMIVDKVVPN-  104 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-CHHHHHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-cchHHHHHHHHHHHHHhCCCCC-
Confidence            34555677788899999999999998865677778888887776544332111111 12478888899987763 3333 


Q ss_pred             hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHH
Q 005434          542 SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLY  618 (697)
Q Consensus       542 ~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~  618 (697)
                       ...|...+.-+...+  +.+..+|+.+...     +..+....+...+.-+.+.|.+++|.++|+..... ..|+...|
T Consensus       105 -~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty  178 (501)
T 4g26_A          105 -EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL  178 (501)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence             345665565554444  6788888887642     11112333555666677889999999999999875 45677778


Q ss_pred             HHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC
Q 005434          619 QNCIELENNLASVGDKDSLVNARKLFESALATY  651 (697)
Q Consensus       619 ~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~  651 (697)
                      ...+..--..|      ++++|..+|+++-...
T Consensus       179 ~~Li~~~~~~g------~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          179 AALLKVSMDTK------NADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhCC------CHHHHHHHHHHHHHhC
Confidence            88887777777      8999999999987653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.52  E-value=0.0045  Score=50.77  Aligned_cols=83  Identities=16%  Similarity=0.127  Sum_probs=67.0

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcC
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLG  669 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~-~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G  669 (697)
                      ....|++++|...|++++...|.+.. .+...+......+      +.+.|...|++++...|.++..|..        +
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG------DWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            34678999999999999999999888 8888888887888      8999999999999999988887742        4


Q ss_pred             ChhhHHHHHHHHHhhcCC
Q 005434          670 TSETATAVYWRARKTLKD  687 (697)
Q Consensus       670 ~~~~a~~vy~ral~~~~~  687 (697)
                      ....+...|.++....++
T Consensus        76 ~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHHhccCcc
Confidence            455666666666555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.50  E-value=0.012  Score=46.95  Aligned_cols=65  Identities=14%  Similarity=0.030  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                      +..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+.
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Confidence            557899999999999999999999999999999999999999999999 78899888887655544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.44  E-value=0.025  Score=61.76  Aligned_cols=89  Identities=8%  Similarity=-0.031  Sum_probs=80.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      .+..+.|...|++|+..+|.+...|...+..+...|++++|...+++|+ ...|++...|..........+         
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g---------   88 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALG---------   88 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHHHT---------
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC---------
Confidence            4678999999999999999999999999999999999999999999999 789999999998888877776         


Q ss_pred             cchHHHHHHHHHHHhhcChh
Q 005434          521 ADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~  540 (697)
                       +.+++.+.|++|++..|..
T Consensus        89 -~~~eA~~~~~~al~~~p~~  107 (477)
T 1wao_1           89 -KFRAALRDYETVVKVKPHD  107 (477)
T ss_dssp             -CHHHHHHHHHHHHHHSTTC
T ss_pred             -CHHHHHHHHHHHHHhCCCC
Confidence             4789999999999877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.43  E-value=0.086  Score=52.94  Aligned_cols=169  Identities=11%  Similarity=-0.023  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH-----HHHHHHH-HHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ-----LWLLRIS-VEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~-----lW~~~i~-l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      .+..-+..+...|++++|.+.+.+++ ...|....     .|...+- +....+          +.+.+.+.|++|+...
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~al~~~  145 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYVLKKV----------DYEYCILELKKLLNQQ  145 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHTSS----------CHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHH
Confidence            44455667778999999999999998 45554321     2221111 111112          4788888999998754


Q ss_pred             Chhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC----hHHHHHHHHHHhCCHHHHHHHHHHH
Q 005434          538 SALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS----LPSAIINLVIQKDGIQQAREMYKRF  607 (697)
Q Consensus       538 p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~----l~~~yl~~~~~~~~~~~AR~iy~~~  607 (697)
                      +...    ...+|......+...+  +.+...|++|+........   ...    +.......+...|++++|...|+++
T Consensus       146 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~---~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc---cccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            3211    1223333333333333  5677788888765433221   111    1112233345678899999999998


Q ss_pred             HhCCCC------CHHHHHHHHHHHhccCCCCCcccHHHH-HHHHHHHHhhCC
Q 005434          608 LALPRP------GLVLYQNCIELENNLASVGDKDSLVNA-RKLFESALATYD  652 (697)
Q Consensus       608 i~~~p~------~~~~~~~~i~lE~~~~~~~~~~~~~ra-R~lye~al~~~~  652 (697)
                      +...+.      -..++.........++      +.+.| ...|++|+....
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g------~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKLE------YEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHH
Confidence            875321      1345555555666666      67777 888888886543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.36  E-value=0.085  Score=48.98  Aligned_cols=84  Identities=12%  Similarity=-0.105  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----cCCCcHHHHHHHHHHHHHhcccCC
Q 005434          442 HYISHLLTVYEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG-----KLSDSVQLWLLRISVEIRCVTRNS  515 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~-~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~-----~~P~~~~lW~~~i~l~~~~~~~~~  515 (697)
                      +..+.+..+++.... +| .....+...+..+...|++++|...+++++.-     ..|.....+.....+....+    
T Consensus         6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----   80 (203)
T 3gw4_A            6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG----   80 (203)
T ss_dssp             -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred             ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC----
Confidence            456677774444333 44 56788889999999999999999999999831     12223444444444444444    


Q ss_pred             CCCCccchHHHHHHHHHHHhh
Q 005434          516 FSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       516 ~~~~~~~~~~~~~~f~~al~~  536 (697)
                            +.+.+.+.|++++..
T Consensus        81 ------~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           81 ------NWDAARRCFLEEREL   95 (203)
T ss_dssp             ------CHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHHH
Confidence                  478888889998875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.34  E-value=0.023  Score=46.31  Aligned_cols=56  Identities=13%  Similarity=0.040  Sum_probs=51.3

Q ss_pred             CchHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434          173 NGRMKKVLAQVIRFHPKVPG-VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~-lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW  229 (697)
                      +..+...|++++..+|.++. +|...+.... ..|+.+.|...|++++...|++...|
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            56889999999999999999 9999999886 78999999999999999999988877

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.27  E-value=0.25  Score=49.44  Aligned_cols=155  Identities=8%  Similarity=-0.081  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTED------IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR  509 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~------lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~  509 (697)
                      +..+.|...|++++...+....      .+...+.++...|++++|...+.+|+ ...+..      ...|.....+...
T Consensus        89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHH
Confidence            4578888999999887665432      22334566677889999999999998 443332      3344444444444


Q ss_pred             hcccCCCCCCccchHHHHHHHHHHHh---hcChhh--hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434          510 CVTRNSFSPSKADILSIFELLKCILT---KVSALE--SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS  582 (697)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~f~~al~---~~p~~~--~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~  582 (697)
                      .+          +.+.+...|++|+.   ..|...  ...++......+...+  +.+...|++++.......   ....
T Consensus       168 ~~----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~---~~~~  234 (293)
T 2qfc_A          168 NG----------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---SMAL  234 (293)
T ss_dssp             TT----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---BCSS
T ss_pred             cC----------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC---cHHH
Confidence            44          47889999999994   333221  1133433333333333  677888888887664322   1333


Q ss_pred             hHHHHHH---HHHHhCCHHHH-HHHHHHHHhC
Q 005434          583 LPSAIIN---LVIQKDGIQQA-REMYKRFLAL  610 (697)
Q Consensus       583 l~~~yl~---~~~~~~~~~~A-R~iy~~~i~~  610 (697)
                      +...|..   .....|+.++| ...|++++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            3444433   34567899999 8889999863

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.24  E-value=0.13  Score=51.59  Aligned_cols=165  Identities=10%  Similarity=-0.033  Sum_probs=79.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHH-----HHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh-hh
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQL-----WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL-ES  542 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l-----W~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~-~~  542 (697)
                      +..+...|++++|..++++++ ...|.....     |...+-... ..        ..+.+.+.+.|++|+...+.. +.
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~-~~--------~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYV-LK--------KVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHH-TT--------SSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             HHHHHHHhhHHHHHHHHHHHh-ccccCChHHHHHHHHHHHHHHHH-Hc--------ccCHHHHHHHHHHHHHHhcccccH
Confidence            556678899999999999999 555554432     222121111 11        114788888999999843221 11


Q ss_pred             ---HHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434          543 ---ESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPG  614 (697)
Q Consensus       543 ---~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~~  614 (697)
                         ..++......+...+  +.+...|++|+........  ........|   .......|++++|...|++++...+..
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence               112222222222222  4555566666654332210  011111122   222345566666666666666542211


Q ss_pred             ------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434          615 ------LVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (697)
Q Consensus       615 ------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~  650 (697)
                            ..++.........++.     ..+.|...|++|+..
T Consensus       230 ~~~~~~~~~~~~lg~~~~~~g~-----~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          230 NSMALIGQLYYQRGECLRKLEY-----EEAEIEDAYKKASFF  266 (293)
T ss_dssp             TBCTTHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHH
Confidence                  2233333333333430     135566666665543

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=96.24  E-value=0.045  Score=49.64  Aligned_cols=49  Identities=4%  Similarity=0.007  Sum_probs=27.0

Q ss_pred             HHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          640 ARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       640 aR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      .+++|..+.....  ....+|..|+.+-+..|+.+.|..||.+|++.-..|
T Consensus        79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P  129 (164)
T 2wvi_A           79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP  129 (164)
T ss_dssp             HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            4445555554432  334566666666666666666666666666555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.18  E-value=0.15  Score=51.13  Aligned_cols=153  Identities=9%  Similarity=0.026  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHHhhCCCChhh-----HHH-HHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-H---HH
Q 005434          345 SDDMHDKILSDMQRDFLVDPKY-----WDW-LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-I---FD  414 (697)
Q Consensus       345 ~~~~~~~il~~~~~~~p~~~~~-----w~~-~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-l---w~  414 (697)
                      ..+.+..+++++....|..+..     |.. ++..+..             .++++.|...|+++++..+... .   ..
T Consensus        90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-------------KVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-------------SSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-------------ccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3567778888888877766552     332 4454433             3578999999999998543221 1   11


Q ss_pred             HHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc---C----CCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          415 LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---G----CLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (697)
Q Consensus       415 ~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~---~----~~~~~lw~~y~~l~~~~~~~~~A~~l~~~  487 (697)
                      .|..+-.-..               ..+..+.|...|++|+..   .    +....++...+..+...|++++|...+++
T Consensus       157 ~~~~lg~~y~---------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~  221 (293)
T 3u3w_A          157 IENAIANIYA---------------ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK  221 (293)
T ss_dssp             HHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            2222211111               135578899999999852   1    12345788899999999999999999999


Q ss_pred             HhhccCC------CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434          488 LCSGKLS------DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (697)
Q Consensus       488 al~~~~P------~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~  535 (697)
                      |+ ...+      ....+|..........|.         +.+++.+.|++|+.
T Consensus       222 al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          222 AI-EISCRINSMALIGQLYYQRGECLRKLEY---------EEAEIEDAYKKASF  265 (293)
T ss_dssp             HH-HHHHHTTBCTTHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHH
T ss_pred             HH-HHHHHcCcHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHH
Confidence            98 4322      225666666666655553         24677777888875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.023  Score=47.08  Aligned_cols=69  Identities=9%  Similarity=-0.044  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCV  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~  511 (697)
                      +..+.|...|++|+..+|.++..|...+..+...|++++|...+++++ ...|++      ...+..........+
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999 788987      555555554444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.01  E-value=0.4  Score=45.40  Aligned_cols=189  Identities=12%  Similarity=-0.001  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (697)
Q Consensus       312 a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~  391 (697)
                      |...|+++.+.  .+.+....+-.++..-   ...+.+...++++.+.  .++..+..++..+... .         +..
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~-g---------~~~   67 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSS---GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRN-P---------QQA   67 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSS-T---------TSC
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC-C---------CCC
Confidence            45667777764  3344444444444331   2356777778777664  5688888999888642 1         124


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC--cHHHHHHHH
Q 005434          392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TEDIAHRYV  469 (697)
Q Consensus       392 ~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~--~~~lw~~y~  469 (697)
                      +.++|...|+++++.-...-.+. ...+.   .  ...         ...++.+++...|++|+..++.  .+..+...+
T Consensus        68 ~~~~A~~~~~~A~~~g~~~a~~~-Lg~~y---~--~g~---------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg  132 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGSKSGEIV-LARVL---V--NRQ---------AGATDVAHAITLLQDAARDSESDAAVDAQMLLG  132 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHH-HHHHH---T--CGG---------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHH-HHHHH---H--cCC---------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence            68999999999976532211111 11111   1  000         0134688999999999998773  478888888


Q ss_pred             HHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          470 TLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       470 ~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      .++..    .+++++|...+++|+ .. |.+...+.....+...... .. ++  .+.+++...|++|+..-+
T Consensus       133 ~~y~~g~g~~~d~~~A~~~~~~A~-~~-~~~~~a~~~Lg~~y~~g~g-g~-~~--~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          133 LIYASGVHGPEDDVKASEYFKGSS-SL-SRTGYAEYWAGMMFQQGEK-GF-IE--PNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHH-HT-SCTTHHHHHHHHHHHHCBT-TT-BC--CCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHcCCC-CC-CC--CCHHHHHHHHHHHHHcCC
Confidence            88888    789999999999999 44 4443444333333332210 00 01  157889999999987543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.16  Score=53.74  Aligned_cols=194  Identities=12%  Similarity=0.026  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHHHcCCCc-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH-HHH
Q 005434          442 HYISHLLTVYEKAEAMGCLT-----------------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW-LLR  503 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~-----------------~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW-~~~  503 (697)
                      +..+.|...|.+++...+..                 +......+.++...|++++|.+.+.+++ ...+...+-- ...
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-EYMMQFAKSKTVKV   96 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH-HHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccchHHHHH
Confidence            34566777777777654432                 1235667888899999999999999887 3333211111 111


Q ss_pred             HH--HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC
Q 005434          504 IS--VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG  575 (697)
Q Consensus       504 i~--l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~  575 (697)
                      +.  +..-...     +  .+.+.+.+++++++...+...    ...++...+..+...+  +.+..+++.+...+....
T Consensus        97 ~~~~l~~~~~~-----~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           97 LKTLIEKFEQV-----P--DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHCSC-----C--SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhC-----C--CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            11  1111111     1  146778888888886432211    2345554455444444  467777888777664432


Q ss_pred             CCCCCCChHHHHH---HHHHHhCCHHHHHHHHHHHHhCC-----CCC--HHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434          576 GGESGFSLPSAII---NLVIQKDGIQQAREMYKRFLALP-----RPG--LVLYQNCIELENNLASVGDKDSLVNARKLFE  645 (697)
Q Consensus       576 ~~~~~~~l~~~yl---~~~~~~~~~~~AR~iy~~~i~~~-----p~~--~~~~~~~i~lE~~~~~~~~~~~~~raR~lye  645 (697)
                      .   .......|+   ......|++++|+.+|++++...     |+.  ..++.....+....+      +.+.|...|.
T Consensus       170 ~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~y~~A~~~~~  240 (434)
T 4b4t_Q          170 D---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK------DYKTAFSYFF  240 (434)
T ss_dssp             C---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS------CHHHHHHHHH
T ss_pred             c---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH------hHHHHHHHHH
Confidence            1   233333443   33456899999999999998642     222  124555555555556      8899999999


Q ss_pred             HHHhhCC
Q 005434          646 SALATYD  652 (697)
Q Consensus       646 ~al~~~~  652 (697)
                      .++..+.
T Consensus       241 ~a~~~~~  247 (434)
T 4b4t_Q          241 ESFESYH  247 (434)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8887654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=95.83  E-value=0.16  Score=46.96  Aligned_cols=159  Identities=8%  Similarity=-0.011  Sum_probs=88.9

Q ss_pred             hcCCHHHHHHHHHHHhhccCC-CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh----hhHHHHHH
Q 005434          474 QLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL----ESESLWLM  548 (697)
Q Consensus       474 ~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~----~~~~lW~~  548 (697)
                      ..|++++|.++++... . .| .....|.....+....+          +.+.+.+.|++++......    .....+..
T Consensus         4 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   71 (203)
T 3gw4_A            4 EAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMD----------RFDEARASFQALQQQAQKSGDHTAEHRALHQ   71 (203)
T ss_dssp             ---CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            5688999988555544 3 44 45667766666666555          4788888999998743211    11223332


Q ss_pred             HHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCC--C----HHH
Q 005434          549 ALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRP--G----LVL  617 (697)
Q Consensus       549 y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~--~----~~~  617 (697)
                      ....+...+  +.+...+++++..+.....  ........+   .......|++++|...|++++...+.  .    ...
T Consensus        72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  149 (203)
T 3gw4_A           72 VGMVERMAGNWDAARRCFLEERELLASLPE--DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA  149 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            222222222  5667777777776543210  010111222   22234568888888888888864211  1    112


Q ss_pred             HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434          618 YQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      +...+.+....|      +.+.|...|++++....
T Consensus       150 ~~~la~~~~~~g------~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          150 FRGLGDLAQQEK------NLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc------CHHHHHHHHHHHHHHHH
Confidence            344555555666      77888888888887644

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.63  E-value=0.7  Score=50.43  Aligned_cols=165  Identities=12%  Similarity=0.024  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHhhh-----------HHHHHHHH
Q 005434          498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK-VSALESESLWLMALKFFMNQK-----------HYFDKLVE  565 (697)
Q Consensus       498 ~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~-~p~~~~~~lW~~y~~~~~~~~-----------~~~~~l~~  565 (697)
                      .++...|+...+.|          +++++.++|++.... +++.  ...|...+..+...+           +.+..+|+
T Consensus        27 ~~l~~~id~c~k~G----------~~~~A~~lf~~M~~~Gv~pd--~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~   94 (501)
T 4g26_A           27 ALLKQKLDMCSKKG----------DVLEALRLYDEARRNGVQLS--QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK   94 (501)
T ss_dssp             HHHHHHHHHTTTSC----------CHHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC----------CHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence            34555566555555          589999999998764 4333  344554444332211           35667787


Q ss_pred             HHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434          566 IALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLF  644 (697)
Q Consensus       566 ~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~ly  644 (697)
                      .+...     +..+....+...+.-+.+.|.++.|..+|+..... ..|+...|...|.---..|      +++.|..+|
T Consensus        95 ~M~~~-----G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g------~~~~A~~l~  163 (501)
T 4g26_A           95 QMIVD-----KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG------DADKAYEVD  163 (501)
T ss_dssp             HHHHT-----TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred             HHHHh-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC------CHHHHHHHH
Confidence            76642     11122333556677777899999999999999875 5667777877776666777      899999999


Q ss_pred             HHHHhhCC-CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          645 ESALATYD-QNTSLWRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       645 e~al~~~~-~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      +.+...-- .+...|...++--.+.|+.+.|..++++....-
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence            99987533 466888888888889999999999999876554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.58  E-value=0.12  Score=45.28  Aligned_cols=65  Identities=11%  Similarity=-0.130  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (697)
Q Consensus       463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~  536 (697)
                      .++...+..+...|++++|...+.+++ ...|..      ...+..........+          +.+++.+.|++++..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a~~~   78 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLG----------EFETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHH
Confidence            466777788888999999999999998 443321      123333334444444          478888888888875


Q ss_pred             cC
Q 005434          537 VS  538 (697)
Q Consensus       537 ~p  538 (697)
                      .+
T Consensus        79 ~~   80 (164)
T 3ro3_A           79 AR   80 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.40  E-value=0.11  Score=45.63  Aligned_cols=121  Identities=17%  Similarity=0.033  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhcc
Q 005434          558 HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNL  628 (697)
Q Consensus       558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~  628 (697)
                      +.+...+++++........   .......   ........|.+++|...|++++...+..      ...+...+.+....
T Consensus        26 ~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (164)
T 3ro3_A           26 RDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  102 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            4566667776665443211   1111112   2223456799999999999999854321      23455556666667


Q ss_pred             CCCCCcccHHHHHHHHHHHHhhCC--CC----chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          629 ASVGDKDSLVNARKLFESALATYD--QN----TSLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       629 ~~~~~~~~~~raR~lye~al~~~~--~~----~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                      +      +.+.|...|++++....  .+    ...+..........|+.+.|...+.+|++....
T Consensus       103 ~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          103 Q------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             h------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            7      89999999999998755  12    245666677777789999999999999987653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.05  E-value=0.15  Score=45.72  Aligned_cols=94  Identities=10%  Similarity=0.012  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCHHH
Q 005434          137 FSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFH-P-KVPGVWIYAAAWEFDHNLNVTA  210 (697)
Q Consensus       137 ~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~-p-~~~~lW~~~a~~e~~~~~~~~~  210 (697)
                      .....+++.-|++.+...|.+.+..++|+--+.+.+    ..+...+|+..+... | +....++..+--.+ ..++++.
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~   89 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHH
Confidence            345778889999999999999999999998776654    236788999999988 7 34555555555555 7899999


Q ss_pred             HHHHHHHhhhhCCCCHHHHHH
Q 005434          211 ARALMQNGLRVCPTSEELWVE  231 (697)
Q Consensus       211 aR~~~~r~l~~~p~~~~lW~~  231 (697)
                      ||+.++++|+..|++.+.-..
T Consensus        90 A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999987654433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.75  E-value=0.15  Score=41.64  Aligned_cols=71  Identities=13%  Similarity=-0.010  Sum_probs=57.8

Q ss_pred             CCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          458 GCLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~---~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      +|.++++|..|+..+...++   .++|..++++|+ ...|+++.-+..........+          +.+.+.+.|++.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-~~dp~~~rA~~~lg~~~~~~g----------~y~~Ai~~w~~~l   70 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-QLEPYNEAALSLIANDHFISF----------RFQEAIDTWVLLL   70 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence            57889999999988865554   688999999999 788999888887777776665          4788888899988


Q ss_pred             hhcCh
Q 005434          535 TKVSA  539 (697)
Q Consensus       535 ~~~p~  539 (697)
                      ...|.
T Consensus        71 ~~~p~   75 (93)
T 3bee_A           71 DSNDP   75 (93)
T ss_dssp             TCCCT
T ss_pred             hhCCC
Confidence            87765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.50  E-value=3.5  Score=42.60  Aligned_cols=150  Identities=11%  Similarity=-0.080  Sum_probs=95.8

Q ss_pred             HHHhhCCCChhhHHHH--HHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-----HHHHHHHHHHHHhcCC
Q 005434          355 DMQRDFLVDPKYWDWL--ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-----IFDLYTKFLMDMIAPK  427 (697)
Q Consensus       355 ~~~~~~p~~~~~w~~~--a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-----lw~~yi~~~~~~~~~~  427 (697)
                      .+...-|.++..|..+  |+.++...          ....+.+|+..|++|++.-|+-.     +...|+  ....... 
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~----------~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~--~~~~~~~-  251 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHG----------DDKSLNRASELLGEIVQSSPEFTYARAEKALVDI--VRHSQHP-  251 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHHHHSC-
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhccCC-
Confidence            4556678888887654  33333211          14668899999999999999743     223333  2111110 


Q ss_pred             cccccCCCCCchhHhHHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434          428 KEETRDSELPSHVEHYISHLLTVYEKA--EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (697)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~ar~~ye~a--l~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (697)
                        .         .......++..++.+  +..+|..+..+..++-.....|++++|...+++|+ ..+|+ ...|.....
T Consensus       252 --~---------~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln~s-~~a~~llG~  318 (372)
T 3ly7_A          252 --L---------DEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLEMS-WLNYVLLGK  318 (372)
T ss_dssp             --C---------CHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCC-HHHHHHHHH
T ss_pred             --C---------chhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCC-HHHHHHHHH
Confidence              0         012333444444432  23468888899888877777899999999999999 66664 444444444


Q ss_pred             HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434          506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      +..-.|          +.+++.+.|++|+..-|..
T Consensus       319 ~~~~~G----------~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          319 VYEMKG----------MNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHTT----------CHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHCC----------CHHHHHHHHHHHHhcCCCc
Confidence            444445          4788999999999877743

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.29  E-value=1.6  Score=45.16  Aligned_cols=123  Identities=8%  Similarity=0.000  Sum_probs=70.4

Q ss_pred             chHHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHhh--h-HH---HHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434          522 DILSIFELLKCILTKVSALESE--SLWLMALKFFMNQ--K-HY---FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ  593 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p~~~~~--~lW~~y~~~~~~~--~-~~---~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~  593 (697)
                      +..+++++|++|++.-|.....  .+...|+-.....  . ..   ++..+.. ........   ..+.+...+......
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~---~~a~~~~alal~~l~  289 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELN---NLSIIYQIKAVSALV  289 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGT---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCC---cCHHHHHHHHHHHHh
Confidence            5788999999999887753211  1222232111111  1 11   2222221 11111111   123333333333344


Q ss_pred             hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434          594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (697)
Q Consensus       594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~  655 (697)
                      .|+++.|...+++++.+.| +...|.....+....|      +.+.|-+.|++|+...|..+
T Consensus       290 ~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G------~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          290 KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKG------MNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSCSHH
T ss_pred             CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHhcCCCcC
Confidence            6999999999999999875 4444444455555666      88999999999999988543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=89.32  E-value=2.3  Score=34.89  Aligned_cols=73  Identities=12%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             HHHHHHHHhc-CchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434          163 KYMEFCRQRK-NGRMKKVLAQVIRFH-------PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (697)
Q Consensus       163 ~y~~~~~~~~-~~~~~~~~~ral~~~-------p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~  234 (697)
                      ....++...+ +..+..-|+.|+...       +..+.++..++.-.. ..|+++.|...++++++..|++..+.....-
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            3344444445 567888888888864       234678888888776 7999999999999999999998877555543


Q ss_pred             HH
Q 005434          235 ME  236 (697)
Q Consensus       235 ~E  236 (697)
                      ++
T Consensus        89 ~~   90 (104)
T 2v5f_A           89 FE   90 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=86.50  E-value=4.9  Score=43.48  Aligned_cols=85  Identities=8%  Similarity=-0.026  Sum_probs=58.8

Q ss_pred             HhHHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHH
Q 005434          441 EHYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRIS  505 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~-----~~~~~---~lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~  505 (697)
                      ++..+.|..+|++++..     ++.++   ......+..+...|++++|..++++++..       .+|.-...+.....
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            35678888899998874     44444   45667788899999999999999998831       12332333444444


Q ss_pred             HHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434          506 VEIRCVTRNSFSPSKADILSIFELLKCILT  535 (697)
Q Consensus       506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~  535 (697)
                      +....|          +.+++..+|++|+.
T Consensus       402 ~~~~~G----------~~~eA~~~~~~Al~  421 (490)
T 3n71_A          402 TNWHAG----------HIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHTT----------CHHHHHHHHHHHHH
T ss_pred             HHHHCC----------CHHHHHHHHHHHHH
Confidence            444455          47888888999986

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=86.49  E-value=9.9  Score=32.75  Aligned_cols=86  Identities=9%  Similarity=-0.025  Sum_probs=57.6

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh----c
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK----L  668 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~----~  668 (697)
                      ..+++++|.+.|+++.....+...+.+..+.+. ..+   ...+.++|..+|++|...  .++..+.....+-..    .
T Consensus        37 ~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~-G~g---~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~  110 (138)
T 1klx_A           37 SQINKQKLFQYLSKACELNSGNGCRFLGDFYEN-GKY---VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV  110 (138)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-CSS---SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHc-CCC---CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence            456788899999999987544334444444333 221   123889999999999876  345545555554444    6


Q ss_pred             CChhhHHHHHHHHHhh
Q 005434          669 GTSETATAVYWRARKT  684 (697)
Q Consensus       669 G~~~~a~~vy~ral~~  684 (697)
                      +|.+.|...|++|+..
T Consensus       111 ~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          111 KNEKQAVKTFEKACRL  126 (138)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHC
Confidence            8889999999998765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=86.32  E-value=4.7  Score=35.90  Aligned_cols=88  Identities=9%  Similarity=0.108  Sum_probs=65.8

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccC-C-CcHHHHHHHHHHHHHhcccCC
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG---KLDEARKLAAKLCSGKL-S-DSVQLWLLRISVEIRCVTRNS  515 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~---~~~~A~~l~~~al~~~~-P-~~~~lW~~~i~l~~~~~~~~~  515 (697)
                      ...+..++..|++++..++.+.+..+.|+-.+.+.+   +.+++..+++..+ ... | ...+.+....--..+.+    
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~~~kl~----   85 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK----   85 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTS----
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHHHHHcc----
Confidence            567889999999999988999999999999999988   4568999999999 455 6 23333322221223333    


Q ss_pred             CCCCccchHHHHHHHHHHHhhcCh
Q 005434          516 FSPSKADILSIFELLKCILTKVSA  539 (697)
Q Consensus       516 ~~~~~~~~~~~~~~f~~al~~~p~  539 (697)
                            +.+++++.++++|+.-|.
T Consensus        86 ------~Y~~A~~y~~~lL~ieP~  103 (152)
T 1pc2_A           86 ------EYEKALKYVRGLLQTEPQ  103 (152)
T ss_dssp             ------CHHHHHHHHHHHHHHCTT
T ss_pred             ------CHHHHHHHHHHHHhcCCC
Confidence                  578999999999987764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=86.31  E-value=3.3  Score=44.86  Aligned_cols=121  Identities=12%  Similarity=0.040  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHh
Q 005434          558 HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLAL-----PRPGLV---LYQNCIELEN  626 (697)
Q Consensus       558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~-----~p~~~~---~~~~~i~lE~  626 (697)
                      +.+..++++++.......+ +.++.+...+   ...+...|.+++|..+|++++..     .|..+.   .+...+.+..
T Consensus       326 ~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~  404 (490)
T 3n71_A          326 HEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW  404 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            4566667777765433222 2244444443   33345679999999999999873     333333   5666777777


Q ss_pred             ccCCCCCcccHHHHHHHHHHHHhhC----C-CCc---hHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          627 NLASVGDKDSLVNARKLFESALATY----D-QNT---SLWRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       627 ~~~~~~~~~~~~raR~lye~al~~~----~-~~~---~lW~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      .+|      +.+.|..+|++|+...    | ++|   ++-....+-..+.|..+.|..+|.+|....
T Consensus       405 ~~G------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          405 HAG------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HTT------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCC------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888      8999999999999753    4 455   444455555666788889999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=81.46  E-value=9  Score=31.14  Aligned_cols=68  Identities=9%  Similarity=-0.090  Sum_probs=38.6

Q ss_pred             HHhCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434          592 IQKDGIQQAREMYKRFLALP-------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST  664 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~-------p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f  664 (697)
                      ...+++..|..-|+.|+...       +....++..++.-..++|      +++.|...|++++...|.++.+.....-|
T Consensus        16 ~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g------~~~~A~~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG------DLDKALLLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc------CHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence            34566666666666666532       112334555554445555      66777777777777766665554444433


Q ss_pred             H
Q 005434          665 E  665 (697)
Q Consensus       665 E  665 (697)
                      +
T Consensus        90 ~   90 (104)
T 2v5f_A           90 E   90 (104)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=80.27  E-value=3.4  Score=43.92  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHc-----CCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAM-----GCLTED---IAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRISV  506 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~-----~~~~~~---lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~l  506 (697)
                      +..+.|..+|++++..     +|.++.   .....+..+...|++++|..++++++..       .+|+-...+.....+
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            3467888888888873     455554   4566778889999999999999998831       123223334444444


Q ss_pred             HHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434          507 EIRCVTRNSFSPSKADILSIFELLKCILT  535 (697)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~f~~al~  535 (697)
                      ....|          +.+++..+|++|+.
T Consensus       392 ~~~qg----------~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLE----------NKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTT----------CHHHHHHHHHHHHH
T ss_pred             HHhcc----------CHHHHHHHHHHHHH
Confidence            44444          36788888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	697
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	0.002

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 30/302 (9%), Positives = 87/302 (28%), Gaps = 35/302 (11%)

Query: 158 IELWFKYMEFCRQRK---------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN--- 205
           +++W KY+++ +              R+     Q +      P +W  AA +    +   
Sbjct: 8   VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 67

Query: 206 ----------LNVTAARALMQNGLRV-CPTSEELWVEYLRMELTYLNKLKARKV---ALG 251
                     L    A  + +  +      +  L+  Y   E + +   K   +    L 
Sbjct: 68  AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127

Query: 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV 311
            +       +    +     E       +  +      ++     +   ++ +  +   V
Sbjct: 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187

Query: 312 LQTIYSGAVEALPSSFNLRQRFFE-IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL 370
              I+   ++           + + +        +  + +++L+          + W   
Sbjct: 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-- 245

Query: 371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEE 430
              +     S  G    I+    ++    + E  +   ++++ D Y    MD+      E
Sbjct: 246 ---RFLAFESNIGDLASIL-KVEKRRFTAFREEYEGKETALLVDRYK--FMDLYPCSASE 299

Query: 431 TR 432
            +
Sbjct: 300 LK 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	697
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.93
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.76
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.18
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.94
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.78
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.45
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.35
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.15
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.87
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.01
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.93
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.09
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.74
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.69
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.41
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	91.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	88.96
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	86.86

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.5e-25  Score=227.36  Aligned_cols=246  Identities=13%  Similarity=0.112  Sum_probs=202.7

Q ss_pred             hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC------------
Q 005434          410 SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK------------  477 (697)
Q Consensus       410 ~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~------------  477 (697)
                      ..+|..|++|++....... +         .....++++.+|++|+...|.++++|+.|++++...++            
T Consensus         8 ~~~W~~yi~~E~~~~~~~~-~---------~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~   77 (308)
T d2onda1           8 VDMWKKYIQWEKSNPLRTE-D---------QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK   77 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCC-C---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHHHHhCccccc-c---------cchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcc
Confidence            3499999999876321111 1         23456789999999999999999999999999876543            


Q ss_pred             --HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Q 005434          478 --LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN  555 (697)
Q Consensus       478 --~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~  555 (697)
                        .++|+.++++|+...+|.+..+|..|+.++...+.          .+.++.+|++++...|. +...+|..|+.++..
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~----------~~~a~~i~~~~l~~~~~-~~~~~w~~~~~~~~~  146 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK----------YEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Confidence              57899999999943578899999999999988764          78999999999986553 356799999998876


Q ss_pred             hh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCC
Q 005434          556 QK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ-KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVG  632 (697)
Q Consensus       556 ~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~-~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~  632 (697)
                      .+  +.++.+|++|+..++.      ...++..++..... .|+.+.|+++|++++..+|.+..+|..|++++...|   
T Consensus       147 ~~~~~~ar~i~~~al~~~~~------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g---  217 (308)
T d2onda1         147 AEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---  217 (308)
T ss_dssp             HHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             cCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC---
Confidence            65  6789999999865432      34455555544433 588999999999999999999999999999999998   


Q ss_pred             CcccHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          633 DKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       633 ~~~~~~raR~lye~al~~~~~~~----~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                         ++++||.+|++|+..++.++    .+|..|++||..+|+.+.+++|++|+.+.+++.
T Consensus       218 ---~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         218 ---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             ---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             ---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence               99999999999999887443    699999999999999999999999999999744

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.1e-23  Score=213.15  Aligned_cols=246  Identities=13%  Similarity=0.232  Sum_probs=192.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 005434           91 LKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQ  170 (697)
Q Consensus        91 ~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~  170 (697)
                      .+.-|++||+||....                        .....+....+|+..+|+|||..+|.+.++|..|++|+..
T Consensus         7 ~~~~W~~yi~~E~~~~------------------------~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~   62 (308)
T d2onda1           7 QVDMWKKYIQWEKSNP------------------------LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ   62 (308)
T ss_dssp             HHHHHHHHHHHHHTCT------------------------TCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc------------------------ccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4678999999985310                        0111122346789999999999999999999999999864


Q ss_pred             hc---------------CchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC-HHHHHHHH
Q 005434          171 RK---------------NGRMKKVLAQVIRF-HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-EELWVEYL  233 (697)
Q Consensus       171 ~~---------------~~~~~~~~~ral~~-~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~-~~lW~~y~  233 (697)
                      .+               ...++.+|+||+.. .|.++.+|..|+.++ +..|+++.||.+|++++...|.+ ..+|..|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~-~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~  141 (308)
T d2onda1          63 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM  141 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHH
T ss_pred             cCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            31               24688999999975 788999999999999 58999999999999999999975 46899999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (697)
Q Consensus       234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (697)
                      +++...+                                                                   +.+.|+
T Consensus       142 ~~~~~~~-------------------------------------------------------------------~~~~ar  154 (308)
T d2onda1         142 KFARRAE-------------------------------------------------------------------GIKSGR  154 (308)
T ss_dssp             HHHHHHH-------------------------------------------------------------------CHHHHH
T ss_pred             HHHHHcC-------------------------------------------------------------------ChHHHH
Confidence            9886532                                                                   224567


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (697)
Q Consensus       314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~  393 (697)
                      .+|++|++..|.+.                                     ..|..+|..+...            .+..
T Consensus       155 ~i~~~al~~~~~~~-------------------------------------~~~~~~a~~e~~~------------~~~~  185 (308)
T d2onda1         155 MIFKKAREDARTRH-------------------------------------HVYVTAALMEYYC------------SKDK  185 (308)
T ss_dssp             HHHHHHHTSTTCCT-------------------------------------HHHHHHHHHHHHT------------SCCH
T ss_pred             HHHHHHHHhCCCcH-------------------------------------HHHHHHHHHHHHh------------ccCH
Confidence            78888777655543                                     3344444433211            2457


Q ss_pred             HHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc----HHHHHHH
Q 005434          394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----EDIAHRY  468 (697)
Q Consensus       394 ~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~----~~lw~~y  468 (697)
                      +.|+.+|+.|++..|+.. +|..|++++...                  +..++||.+|++|+...|.+    ..+|..|
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~------------------g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~  247 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHL------------------NEDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc------------------CChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            889999999999988765 999999998752                  45789999999999987654    4699999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (697)
                      ++|+..+|+.+.++++++++. ..+|..
T Consensus       248 ~~fE~~~G~~~~~~~~~~r~~-~~~~~~  274 (308)
T d2onda1         248 LAFESNIGDLASILKVEKRRF-TAFREE  274 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHH-HHTTTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HHCccc
Confidence            999999999999999999998 677764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-16  Score=167.12  Aligned_cols=372  Identities=10%  Similarity=0.041  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+..+|++++..+|++...|...+..+...| +.++...|++++..+|.++..|...+.... ..|+++.|...+.++
T Consensus        15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~-~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHA   93 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh-hhccccccccccccc
Confidence            567889999999999999999999999888877 578999999999999999999999999886 789999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      +...|.....+...........           ..                                             
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~-----------~~---------------------------------------------  117 (388)
T d1w3ba_          94 LRLKPDFIDGYINLAAALVAAG-----------DM---------------------------------------------  117 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHS-----------CS---------------------------------------------
T ss_pred             cccccccccccccccccccccc-----------cc---------------------------------------------
Confidence            9999988776665544332210           00                                             


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~  378 (697)
                                 ..+...........+................   .........+...+...|+.+..+..++.....  
T Consensus       118 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  181 (388)
T d1w3ba_         118 -----------EGAVQAYVSALQYNPDLYCVRSDLGNLLKAL---GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA--  181 (388)
T ss_dssp             -----------SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--
T ss_pred             -----------ccccccccccccccccccccccccccccccc---chhhhhHHHHHHhhccCcchhHHHHhhcccccc--
Confidence                       0001111111111111111111111111111   123556666777788899999888888888764  


Q ss_pred             CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (697)
Q Consensus       379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~  457 (697)
                                 .+..+.|...++++++..|... .|.........                  .+..+.|...|+++...
T Consensus       182 -----------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~  232 (388)
T d1w3ba_         182 -----------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE------------------ARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT------------------TTCTTHHHHHHHHHHHH
T ss_pred             -----------cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhc------------------cccHHHHHHHHHHhHHH
Confidence                       4778999999999998877653 44433333221                  23467889999999998


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (697)
Q Consensus       458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~  537 (697)
                      ++.....|...+..+...|++++|...+++++ ...|++...|.....+....+.          .+.+.+.|++++...
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~  301 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKGS----------VAEAEDCYNTALRLC  301 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHSC----------HHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhhhccC
Confidence            89999999999999999999999999999999 7899999999888877776663          677888888887766


Q ss_pred             ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434          538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL  617 (697)
Q Consensus       538 p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~  617 (697)
                      |..  ...|....                                      ......|++++|.+.|+++++..|.....
T Consensus       302 ~~~--~~~~~~l~--------------------------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~  341 (388)
T d1w3ba_         302 PTH--ADSLNNLA--------------------------------------NIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             TTC--HHHHHHHH--------------------------------------HHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             Ccc--chhhhHHH--------------------------------------HHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            543  22222111                                      11234678999999999999999998888


Q ss_pred             HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCC
Q 005434          618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGT  670 (697)
Q Consensus       618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (697)
                      +...+.+....|      +.+.|...|++|++..|.+++.|...+..-.+.||
T Consensus       342 ~~~la~~~~~~g------~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         342 HSNLASVLQQQG------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTT------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            888888888888      88999999999999999888888887776666664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.8e-15  Score=154.41  Aligned_cols=360  Identities=13%  Similarity=0.046  Sum_probs=236.1

Q ss_pred             Hhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005434          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (697)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~  248 (697)
                      +.| +..+...|+++++.+|+++.+|...+.... ..|+++.|...|+++++.+|++...|...+.+....+        
T Consensus        11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g--------   81 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG--------   81 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc--------
Confidence            345 578999999999999999999999999886 7999999999999999999999888877665543221        


Q ss_pred             HhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH
Q 005434          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (697)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~  328 (697)
                                                                                 +.+.|...|..+++..|....
T Consensus        82 -----------------------------------------------------------~~~~A~~~~~~~~~~~~~~~~  102 (388)
T d1w3ba_          82 -----------------------------------------------------------QLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             -----------------------------------------------------------ccccccccccccccccccccc
Confidence                                                                       234566777777776666544


Q ss_pred             HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (697)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~  408 (697)
                      ..............   ...............+.....+...+.....             ......+...+.+.+...|
T Consensus       103 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  166 (388)
T d1w3ba_         103 GYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-------------LGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHCT
T ss_pred             cccccccccccccc---ccccccccccccccccccccccccccccccc-------------cchhhhhHHHHHHhhccCc
Confidence            43333222222111   1122222233333333333333333322221             1234445555555555555


Q ss_pred             chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (697)
Q Consensus       409 ~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~  487 (697)
                      ... .+........                  ..+..+.|...+++++..+|.+...|...+..+...|++++|...+.+
T Consensus       167 ~~~~~~~~l~~~~~------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  228 (388)
T d1w3ba_         167 NFAVAWSNLGCVFN------------------AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             TCHHHHHHHHHHHH------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             chhHHHHhhccccc------------------ccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHH
Confidence            432 2221111111                  123355666666666666666666666666666666666666666666


Q ss_pred             HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005434          488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA  567 (697)
Q Consensus       488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a  567 (697)
                      +. ...|.....|..........+          +.+.+.+.|++++...|..  ...|.                    
T Consensus       229 ~~-~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~al~~~p~~--~~~~~--------------------  275 (388)
T d1w3ba_         229 AL-SLSPNHAVVHGNLACVYYEQG----------LIDLAIDTYRRAIELQPHF--PDAYC--------------------  275 (388)
T ss_dssp             HH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSC--HHHHH--------------------
T ss_pred             hH-HHhhhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCC--HHHHH--------------------
Confidence            66 455665565555544444433          2455666666666544422  12221                    


Q ss_pred             HHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434          568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA  647 (697)
Q Consensus       568 ~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a  647 (697)
                                        .....+...|..++|.+.|++++...|.....+...+.+....+      +.+.|.+.|+++
T Consensus       276 ------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~a  331 (388)
T d1w3ba_         276 ------------------NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKA  331 (388)
T ss_dssp             ------------------HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC------CHHHHHHHHHHH
Confidence                              12222345688999999999999999999888888888888888      899999999999


Q ss_pred             HhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          648 LATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       648 l~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      ++.+|.++.+|...+..-...|+.+.|...|++|++.-|+.
T Consensus       332 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999876654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-11  Score=122.26  Aligned_cols=239  Identities=13%  Similarity=0.054  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|+++++.+|++...|...+..+...| ...+...|.+++..+|+++..|...+.... ..|+++.|...++++
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  113 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRDW  113 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc-ccccccccccchhhH
Confidence            567888999999999999999998888777777 568899999999999999999999888875 789999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (697)
                      +...|....++...........         ++..                                           ..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------------------------------------~~  141 (323)
T d1fcha_         114 LRYTPAYAHLVTPAEEGAGGAG---------LGPS-------------------------------------------KR  141 (323)
T ss_dssp             HHTSTTTGGGCC-------------------------------------------------------------------C
T ss_pred             HHhccchHHHHHhhhhhhhhcc---------cccc-------------------------------------------hh
Confidence            9998875433221111000000         0000                                           00


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC--hhhHHHHHHhhcc
Q 005434          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMT  376 (697)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~--~~~w~~~a~~~l~  376 (697)
                      ............                                     .+...+.++++..|+.  +..|..++.....
T Consensus       142 ~~~~~~~~~~~~-------------------------------------~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         142 ILGSLLSDSLFL-------------------------------------EVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             TTHHHHHHHHHH-------------------------------------HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhHHH-------------------------------------HHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            000000001111                                     2233344444555543  4556667776654


Q ss_pred             cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (697)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al  455 (697)
                                   .++++.|...|++++...|... .|.........                  .+..+.|...|++++
T Consensus       185 -------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al  233 (323)
T d1fcha_         185 -------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN------------------GNQSEEAVAAYRRAL  233 (323)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHH
T ss_pred             -------------HHHHhhhhcccccccccccccccchhhhhhcccc------------------cccchhHHHHHHHHH
Confidence                         4779999999999999887653 44443333322                  355789999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434          456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (697)
Q Consensus       456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (697)
                      +.+|.++..|...+..+...|++++|...+++|+ ...|++...+
T Consensus       234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~  277 (323)
T d1fcha_         234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL-NMQRKSRGPR  277 (323)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHTC----
T ss_pred             HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCcChhhh
Confidence            9999999999999999999999999999999999 6777765443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.2e-11  Score=119.78  Aligned_cols=227  Identities=11%  Similarity=-0.041  Sum_probs=176.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      .+..+.|...|+++++.+|.++..|...+..+...|++++|...+.+++ ...|++...|..........+         
T Consensus        32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~---------  101 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL-ELKPDNQTALMALAVSFTNES---------  101 (323)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT---------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh-ccccccccccccccccccccc---------
Confidence            3568999999999999999999999999999999999999999999999 789999999998888777665         


Q ss_pred             cchHHHHHHHHHHHhhcChhhh-------HHHHHH------HH-HHHHh-hhHHHHHHHHHHHHhhhhCCCCCCCCChHH
Q 005434          521 ADILSIFELLKCILTKVSALES-------ESLWLM------AL-KFFMN-QKHYFDKLVEIALISVAKDGGGESGFSLPS  585 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p~~~~-------~~lW~~------y~-~~~~~-~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~  585 (697)
                       +.+.+.+.|.+++...|....       ...+..      .+ .+... ....+...|.+++..-+...    ...++.
T Consensus       102 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~----~~~~~~  176 (323)
T d1fcha_         102 -LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI----DPDVQC  176 (323)
T ss_dssp             -CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC----CHHHHH
T ss_pred             -cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc----ccccch
Confidence             368888889999876554210       000000      00 00000 11235556676665322111    122333


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 005434          586 AIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTE  665 (697)
Q Consensus       586 ~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE  665 (697)
                      .........|++++|...|++++...|.....|...+.+....|      +.+.|...|+++++..|.++..|...+..-
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN------QSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccc------cchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            33445667899999999999999999999999888888888888      899999999999999999999999999999


Q ss_pred             HhcCChhhHHHHHHHHHhhcCCc
Q 005434          666 TKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       666 ~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      ...|+.+.|...|.+|++.-|+.
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcC
Confidence            99999999999999999976654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.3e-07  Score=95.74  Aligned_cols=189  Identities=10%  Similarity=0.083  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r  217 (697)
                      ..++..+|++|+..+|.+...|..-...+...+ . ..+...+++++..+|+++.+|...+.... ..|+.+.|...+.+
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~k  137 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIAD  137 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhh
Confidence            367889999999999999999998888777765 3 67899999999999999999999988774 79999999999999


Q ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (697)
Q Consensus       218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (697)
                      +++..|++..+|.....+....           +                                              
T Consensus       138 al~~dp~n~~a~~~~~~~~~~~-----------~----------------------------------------------  160 (315)
T d2h6fa1         138 ILNQDAKNYHAWQHRQWVIQEF-----------K----------------------------------------------  160 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHH-----------T----------------------------------------------
T ss_pred             hhhhhhcchHHHHHHHHHHHHH-----------H----------------------------------------------
Confidence            9999999999998876544321           1                                              


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccC---cHHHHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQ---SDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (697)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~---~~~~~~~il~~~~~~~p~~~~~w~~~a~~~  374 (697)
                                ..+.|...|+++++..|.+...|.....++...+...   ....+...+.++++..|+++..|..++...
T Consensus       161 ----------~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll  230 (315)
T d2h6fa1         161 ----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL  230 (315)
T ss_dssp             ----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ----------hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence                      1234678899999999998887766555554433111   123455667889999999999999887765


Q ss_pred             cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch
Q 005434          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS  410 (697)
Q Consensus       375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~  410 (697)
                      ..              ...+.+...++.+++..|..
T Consensus       231 ~~--------------~~~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         231 QD--------------RGLSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             TT--------------TCGGGCHHHHHHHHHHTTTC
T ss_pred             Hh--------------cChHHHHHHHHHHHHhCCCc
Confidence            32              22345666777777665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=9.2e-09  Score=105.13  Aligned_cols=257  Identities=9%  Similarity=-0.085  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCCH
Q 005434          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD-HNLNV  208 (697)
Q Consensus       141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~-~~~~~  208 (697)
                      ..+..+|++++...|++...|..-..++...+           ...+...|++++..+|+++.+|...+..... ..++.
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~  125 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence            46778999999999999999976655554421           2356778999999999999999887765531 23468


Q ss_pred             HHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCC
Q 005434          209 TAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTD  288 (697)
Q Consensus       209 ~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  288 (697)
                      +.|...+++++..+|.....|....-.-..            .                                     
T Consensus       126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~------------~-------------------------------------  156 (334)
T d1dcea1         126 ARELELCARFLEADERNFHCWDYRRFVAAQ------------A-------------------------------------  156 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------T-------------------------------------
T ss_pred             HHHHHHHHHHHhhCchhhhhhhhHHHHHHH------------h-------------------------------------
Confidence            899999999999999876666432110000            0                                     


Q ss_pred             CCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHH
Q 005434          289 GSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWD  368 (697)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~  368 (697)
                                       ....+.|...|+.+++..|.+...|..+-.++...+...   .+...+......+|.+...+.
T Consensus       157 -----------------~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~  216 (334)
T d1dcea1         157 -----------------AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP---DSGPQGRLPENVLLKELELVQ  216 (334)
T ss_dssp             -----------------CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC---CSSSCCSSCHHHHHHHHHHHH
T ss_pred             -----------------ccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH---HHHHHHHHhHHhHHHHHHHHH
Confidence                             002345677777788777777777666555554433110   011111111112222222221


Q ss_pred             HHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHH
Q 005434          369 WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS  445 (697)
Q Consensus       369 ~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (697)
                      .+....                 ..+.+...|..++...|+..   ....++..                    ..+...
T Consensus       217 ~~~~l~-----------------~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~--------------------~~~~~~  259 (334)
T d1dcea1         217 NAFFTD-----------------PNDQSAWFYHRWLLGRAEPLFRCELSVEKST--------------------VLQSEL  259 (334)
T ss_dssp             HHHHHC-----------------SSCSHHHHHHHHHHSCCCCSSSCCCCHHHHH--------------------HHHHHH
T ss_pred             HHHHhc-----------------chhHHHHHHHHHHHhCcchhhHHHHHHHHHH--------------------HHhhHH
Confidence            111111                 11224445555555544321   00011100                    124566


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005434          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (697)
Q Consensus       446 ~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (697)
                      .+...|.+++..+|.+...|...+..+...|++++|.+.+++++ ...|.....|....
T Consensus       260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai-~ldP~~~~y~~~L~  317 (334)
T d1dcea1         260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAAYLDDLR  317 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-HHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCcccHHHHHHHH
Confidence            78888999999999999999999999999999999999999999 78998888887543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.6e-07  Score=91.28  Aligned_cols=239  Identities=13%  Similarity=-0.041  Sum_probs=146.3

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~  469 (697)
                      ....+.+...+++++...+...--.+-+-+......             ...+..+.|...|++|+..+|.++..|...+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y-------------~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg   78 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLY-------------DSLGLRALARNDFSQALAIRPDMPEVFNYLG   78 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHHhhccCCCCHHHHhhhc
Confidence            356677888888988765421100111111111110             0235689999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA  549 (697)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y  549 (697)
                      ..+...|++++|...+++++ ...|++...|.....+....|          +.+.+.+.|+++++..|......+|...
T Consensus        79 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~~~~  147 (259)
T d1xnfa_          79 IYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYYGG----------RDKLAQDDLLAFYQDDPNDPFRSLWLYL  147 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhhHHH-HHHhhhhhhHHHHHHHHHHHh----------hHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            99999999999999999999 789999999988877776665          3688899999999887765444455443


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHH----HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 005434          550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI----QKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (697)
Q Consensus       550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~----~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE  625 (697)
                      ........+....+..... ...+      ....+. .+.+..    ..+..+.+...+...+...|.....|...+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~  219 (259)
T d1xnfa_         148 AEQKLDEKQAKEVLKQHFE-KSDK------EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY  219 (259)
T ss_dssp             HHHHHCHHHHHHHHHHHHH-HSCC------CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhh-ccch------hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH
Confidence            3222211122222222222 1111      111111 111111    112233333333333333333334455555666


Q ss_pred             hccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh
Q 005434          626 NNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (697)
Q Consensus       626 ~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~  667 (697)
                      ...|      +.+.|.+.|++|+..+|.+ -++-.++.+|..
T Consensus       220 ~~~g------~~~~A~~~~~~al~~~p~~-~~~~~~a~~~L~  254 (259)
T d1xnfa_         220 LSLG------DLDSATALFKLAVANNVHN-FVEHRYALLELS  254 (259)
T ss_dssp             HHTT------CHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHH
T ss_pred             HHCC------CHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence            6677      8899999999999888754 355566666643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=1.2e-08  Score=104.24  Aligned_cols=260  Identities=10%  Similarity=-0.025  Sum_probs=174.2

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHH
Q 005434          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD---------HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL  243 (697)
Q Consensus       173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~---------~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~  243 (697)
                      ..++..+++++|..+|+++.+|..-......         ..|.+..|...++++++.+|++..+|.........     
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-----  119 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-----  119 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-----
Confidence            3589999999999999999999765554321         12347889999999999999999999877644321     


Q ss_pred             HHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcC
Q 005434          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL  323 (697)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~  323 (697)
                            ++.                                                      .+.+.|...++++++..
T Consensus       120 ------~~~------------------------------------------------------~~~~~a~~~~~~al~~~  139 (334)
T d1dcea1         120 ------LPE------------------------------------------------------PNWARELELCARFLEAD  139 (334)
T ss_dssp             ------CSS------------------------------------------------------CCHHHHHHHHHHHHHHC
T ss_pred             ------hcc------------------------------------------------------ccHHHHHHHHHHHHhhC
Confidence                  000                                                      02356788899999988


Q ss_pred             CCchHHHHHHH-HHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434          324 PSSFNLRQRFF-EIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (697)
Q Consensus       324 p~~~~~~~~~~-~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~  402 (697)
                      |.....|.... ..+...   .....+...++.+++..|++...|..++......             ++++.|...+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~---~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~-------------~~~~~A~~~~~~  203 (334)
T d1dcea1         140 ERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-------------HPQPDSGPQGRL  203 (334)
T ss_dssp             TTCHHHHHHHHHHHHHTC---CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH-------------SCCCCSSSCCSS
T ss_pred             chhhhhhhhHHHHHHHhc---cccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-------------cCHHHHHHHHHH
Confidence            88766654333 333222   2356777888999999999999999888876542             112212122222


Q ss_pred             HhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434          403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (697)
Q Consensus       403 al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~  482 (697)
                      +++..|.      ........+.               .+..+.+...|.+++..+|.....+...+..+...|+.++|.
T Consensus       204 ~~~~~~~------~~~~~~~~~~---------------l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         204 PENVLLK------ELELVQNAFF---------------TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             CHHHHHH------HHHHHHHHHH---------------HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             hHHhHHH------HHHHHHHHHH---------------hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            2211111      1111111000               001123567788888888877666666666677778899999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434          483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (697)
Q Consensus       483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~  547 (697)
                      ..+.+++ ..+|++...|..........+          +.+++.+.|++|+..-|..  ...|.
T Consensus       263 ~~~~~~~-~~~p~~~~~~~~l~~~~~~~~----------~~~eA~~~~~~ai~ldP~~--~~y~~  314 (334)
T d1dcea1         263 KELQELE-PENKWCLLTIILLMRALDPLL----------YEKETLQYFSTLKAVDPMR--AAYLD  314 (334)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHCTGG----------GHHHHHHHHHHHHHHCGGG--HHHHH
T ss_pred             HHHHHHH-hhCchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCccc--HHHHH
Confidence            9999999 788999999988887776555          4788999999999866632  34554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1e-06  Score=88.94  Aligned_cols=183  Identities=9%  Similarity=0.083  Sum_probs=137.4

Q ss_pred             CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (697)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~  233 (697)
                      |+..+++..+.....+.+ +.++..++++|+.++|.+..+|..-+.......++++.|...++++++.+|++..+|....
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            333444433333344444 5789999999999999999999988887643345799999999999999999999998876


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (697)
Q Consensus       234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (697)
                      .+....           |                                                        ..+.|.
T Consensus       120 ~~~~~l-----------~--------------------------------------------------------~~~eAl  132 (315)
T d2h6fa1         120 VLVEWL-----------R--------------------------------------------------------DPSQEL  132 (315)
T ss_dssp             HHHHHH-----------T--------------------------------------------------------CCTTHH
T ss_pred             HHHHhh-----------c--------------------------------------------------------cHHHHH
Confidence            543321           1                                                        123578


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (697)
Q Consensus       314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~  393 (697)
                      ..|+++++.-|++...|...-.++..++.   .+.+...++++++..|.+...|..++........       ....+.+
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~~~~~~---~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~-------~~~~~~~  202 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG-------YNDRAVL  202 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------SCSHHHH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc-------cchhhhh
Confidence            89999999999999999888777776653   3567788999999999999999887765432110       0114678


Q ss_pred             HHHHHHHHHHhhcCCchh-HHH
Q 005434          394 QKAIQVYEEALKNVPSSM-IFD  414 (697)
Q Consensus       394 ~~a~~vye~al~~~~~~~-lw~  414 (697)
                      ++|...|.++++..|... .|.
T Consensus       203 ~~ai~~~~~al~~~P~~~~~~~  224 (315)
T d2h6fa1         203 EREVQYTLEMIKLVPHNESAWN  224 (315)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHhHHHHHHHHHhCCCchHHHH
Confidence            899999999999999765 554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=8.9e-07  Score=85.85  Aligned_cols=88  Identities=9%  Similarity=-0.080  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|...+......| ...+...|++++..+|+++..|...+.... ..|+.+.|...|+++
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAF  131 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            567889999999999999999999998888777 578999999999999999999999998886 789999999999999


Q ss_pred             hhhCCCCHHH
Q 005434          219 LRVCPTSEEL  228 (697)
Q Consensus       219 l~~~p~~~~l  228 (697)
                      ++..|.+...
T Consensus       132 l~~~p~~~~~  141 (259)
T d1xnfa_         132 YQDDPNDPFR  141 (259)
T ss_dssp             HHHCTTCHHH
T ss_pred             HhhccccHHH
Confidence            9999986543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.6e-06  Score=73.39  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|.+..+|...+....+.| +..+...|.+++..+|+++..|...+.... ..|+++.|...|+++
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~a   97 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEG   97 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence            567889999999999999999999999888777 578999999999999999999999999885 899999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRME  236 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E  236 (697)
                      ++..|+++.+|..+.+++
T Consensus        98 ~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          98 LKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCTTCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHh
Confidence            999999999999887765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-05  Score=70.59  Aligned_cols=96  Identities=13%  Similarity=0.044  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|..++..+...| ...+...|++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            567889999999999999999999999988888 578999999999999999999999999886 799999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHH
Q 005434          219 LRVCPTSEELWVEYLRME  236 (697)
Q Consensus       219 l~~~p~~~~lW~~y~~~E  236 (697)
                      ++..|++..++..+.+..
T Consensus       105 ~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_         105 VKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHSTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHH
Confidence            999999998888776554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2e-05  Score=66.45  Aligned_cols=99  Identities=15%  Similarity=0.052  Sum_probs=84.4

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      .+++++|...|+++|+..|+.. +|.........                  .+..+.|...|++++..+|.++..|...
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK------------------KGDYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhcccccccc------------------cccccccchhhhhHHHhccchhhHHHHH
Confidence            4789999999999999998865 55544443332                  3567899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                      +..+...|++++|...+++++ ...|++..+|..+-.+.
T Consensus        78 g~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          78 AAALEFLNRFEEAKRTYEEGL-KHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Confidence            999999999999999999999 89999999988766554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=0.0016  Score=64.09  Aligned_cols=264  Identities=10%  Similarity=-0.004  Sum_probs=158.7

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC---c---H
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIF-DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---T---E  462 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw-~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~---~---~  462 (697)
                      .|++++|...|+++++..|...-. ...+........             ...+..+.|...|++++...+.   .   .
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~-------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL-------------HCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            478999999999999988865311 111111111110             0246688999999999875322   2   2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccC-----CC---cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKL-----SD---SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (697)
Q Consensus       463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~-----P~---~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al  534 (697)
                      ..+...+..+...|++..|...+.+++ ...     +.   ..........+....+          +.+.+...+.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~~----------~~~~a~~~~~~~~  160 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAF-QLINEQHLEQLPMHEFLVRIRAQLLWAWA----------RLDEAEASARSGI  160 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCTTSTHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHhcccchhhHHHHHHHHHHHHHHHhc----------chhhhHHHHHHHH
Confidence            344555677788899999999988877 321     11   1223323333333333          4677888888888


Q ss_pred             hhcChhh---hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCCh---HHHHHHHHHHhCCHHHHHHHHHH
Q 005434          535 TKVSALE---SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSL---PSAIINLVIQKDGIQQAREMYKR  606 (697)
Q Consensus       535 ~~~p~~~---~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l---~~~yl~~~~~~~~~~~AR~iy~~  606 (697)
                      ...+...   ...........+...+  ......+..+.........  .....   ...........++.++|...|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  238 (366)
T d1hz4a_         161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY--HSDWISNANKVRVIYWQMTGDKAAAANWLRH  238 (366)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc--cCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            7544321   1111111111111111  3344555555554433211  01111   11223345567999999999999


Q ss_pred             HHhCCCCCH----HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC------CCchHHHHHHHHHHhcCChhhHHH
Q 005434          607 FLALPRPGL----VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD------QNTSLWRDYYSTETKLGTSETATA  676 (697)
Q Consensus       607 ~i~~~p~~~----~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~------~~~~lW~~y~~fE~~~G~~~~a~~  676 (697)
                      ++...|...    ..+...+......+      +.+.|..+|++++....      .....|..........|+.+.|..
T Consensus       239 ~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  312 (366)
T d1hz4a_         239 TAKPEFANNHFLQGQWRNIARAQILLG------EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR  312 (366)
T ss_dssp             SCCCCCTTCGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhccccchHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            998766542    23344455556667      88999999999986543      123677888888888999999999


Q ss_pred             HHHHHHhhc
Q 005434          677 VYWRARKTL  685 (697)
Q Consensus       677 vy~ral~~~  685 (697)
                      .+++|+...
T Consensus       313 ~l~~Al~l~  321 (366)
T d1hz4a_         313 VLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.78  E-value=4.6e-05  Score=63.51  Aligned_cols=79  Identities=18%  Similarity=0.087  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++++...|++...|...+......+ ...+...|+++++.+|+++..|+..+.... ..|+.+.|...|+|+
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~-~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            445667777777777777777777777666655 456777777777777777777777777764 667777777777776


Q ss_pred             h
Q 005434          219 L  219 (697)
Q Consensus       219 l  219 (697)
                      |
T Consensus       111 l  111 (112)
T d1hxia_         111 L  111 (112)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.5e-05  Score=63.26  Aligned_cols=90  Identities=10%  Similarity=0.036  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHH
Q 005434          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKV--PGVWIYAAAWEFDHNLNVTAAR  212 (697)
Q Consensus       139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~p~~--~~lW~~~a~~e~~~~~~~~~aR  212 (697)
                      -..++...|++++...|++......|+..+.+.+    ..++..+|++++...|.+  +..|...+.... ..|+++.|+
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A~   92 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKAL   92 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHHH
Confidence            3667889999999999999999999999876543    346899999999988765  347888887775 799999999


Q ss_pred             HHHHHhhhhCCCCHHHH
Q 005434          213 ALMQNGLRVCPTSEELW  229 (697)
Q Consensus       213 ~~~~r~l~~~p~~~~lW  229 (697)
                      ..|+++|...|++....
T Consensus        93 ~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          93 KYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             HHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhCcCCHHHH
Confidence            99999999999986544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=8.4e-05  Score=66.01  Aligned_cols=95  Identities=11%  Similarity=-0.023  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434          558 HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL  637 (697)
Q Consensus       558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~  637 (697)
                      +.+...|++++..-+.      ....+..+.......|.++.|...|+++++..|.....|...+..-..+|      +.
T Consensus        27 ~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g------~~   94 (159)
T d1a17a_          27 ENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG------KF   94 (159)
T ss_dssp             HHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CH
T ss_pred             HHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC------CH
Confidence            4566666666653211      22222233333445666677777777777666666666666665555565      66


Q ss_pred             HHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434          638 VNARKLFESALATYDQNTSLWRDYYST  664 (697)
Q Consensus       638 ~raR~lye~al~~~~~~~~lW~~y~~f  664 (697)
                      +.|-..|++++...|.++.++..+...
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            666666777776666666665555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.65  E-value=9.7e-05  Score=61.43  Aligned_cols=86  Identities=7%  Similarity=-0.079  Sum_probs=80.0

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCC
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGT  670 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (697)
                      ..+.|+++.|...|++++...|.....|...+.+....+      +.+.|...|++|++..|.+++.|...+..-...|+
T Consensus        26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~------~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE------KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhh------hHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            456899999999999999999999999988888888888      89999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHH
Q 005434          671 SETATAVYWRAR  682 (697)
Q Consensus       671 ~~~a~~vy~ral  682 (697)
                      .+.|.+.++|.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=5.2e-05  Score=69.76  Aligned_cols=85  Identities=7%  Similarity=-0.010  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~  218 (697)
                      ...+...|++|+...|.+..+|...+....+.| +..+...|++|+.++|+++..|+..+.... ..|+++.|...|+++
T Consensus        20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~-~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            678889999999999999999999999888877 579999999999999999999999999986 899999999999999


Q ss_pred             hhhCCCC
Q 005434          219 LRVCPTS  225 (697)
Q Consensus       219 l~~~p~~  225 (697)
                      +...|..
T Consensus        99 l~l~p~~  105 (201)
T d2c2la1          99 YSLAKEQ  105 (201)
T ss_dssp             HHHHHHT
T ss_pred             HHhCccc
Confidence            9988753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00016  Score=66.40  Aligned_cols=87  Identities=10%  Similarity=0.018  Sum_probs=79.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~  520 (697)
                      .+..+.|...|++|+..+|.++.+|...+..+...|++++|...+.+|+ ...|++...|.....+....+         
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al-~l~p~~~~a~~~lg~~~~~l~---------   86 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQSVKAHFFLGQCQLEME---------   86 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTCHHHHHHHHHHHHHTT---------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH-HhCCCcHHHHHHHHHHHHHCC---------
Confidence            3668999999999999999999999999999999999999999999999 889999999999888888776         


Q ss_pred             cchHHHHHHHHHHHhhcC
Q 005434          521 ADILSIFELLKCILTKVS  538 (697)
Q Consensus       521 ~~~~~~~~~f~~al~~~p  538 (697)
                       +.+.+...|++|+...|
T Consensus        87 -~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          87 -SYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             -CHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHhCc
Confidence             47889999999998654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0016  Score=58.14  Aligned_cols=98  Identities=9%  Similarity=0.005  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIE---------------LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~---------------lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~  203 (697)
                      ...+...|++|+..+|....               ++...+..+.+.| +..+...+++++..+|+++..|...+.... 
T Consensus        29 ~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-  107 (170)
T d1p5qa1          29 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-  107 (170)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH-
Confidence            55678899999999887542               3333333334455 578999999999999999999999999886 


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHH
Q 005434          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT  238 (697)
Q Consensus       204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~  238 (697)
                      ..|+++.|...|++++...|+++.+...+......
T Consensus       108 ~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1         108 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999888777766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.016  Score=56.51  Aligned_cols=256  Identities=10%  Similarity=-0.025  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHhhCCCChh-----hHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh----HHHHHH
Q 005434          347 DMHDKILSDMQRDFLVDPK-----YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYT  417 (697)
Q Consensus       347 ~~~~~il~~~~~~~p~~~~-----~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~----lw~~yi  417 (697)
                      +.+..++++++...|+++.     .+..++..+..             .|+++.|...|+++++..+...    ....+.
T Consensus        29 ~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          29 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-------------KGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            4445555555555554422     23344555543             4789999999999987543221    111122


Q ss_pred             HHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-----CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434          418 KFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GCL---TEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (697)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~-----~~~---~~~lw~~y~~l~~~~~~~~~A~~l~~~al  489 (697)
                      .......               ..+....+...|.+++..     .+.   ........+..+...|+++.+...+.+++
T Consensus        96 ~~~~~~~---------------~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_          96 QQSEILF---------------AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  160 (366)
T ss_dssp             HHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHH---------------HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            1111111               123456677777776653     111   12345566778888999999999999888


Q ss_pred             hccCCCc-----HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh-----hhhHHHHHHHHHHHHhhh--
Q 005434          490 SGKLSDS-----VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA-----LESESLWLMALKFFMNQK--  557 (697)
Q Consensus       490 ~~~~P~~-----~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~-----~~~~~lW~~y~~~~~~~~--  557 (697)
                       ...+..     ..............+          +.......+.++......     .....++.....++...+  
T Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T d1hz4a_         161 -EVLSSYQPQQQLQCLAMLIQCSLARG----------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  229 (366)
T ss_dssp             -HHTTTSCGGGGHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             -HHhhhhhhhhHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence             443431     122222222222222          245555566666553321     112334443333333333  


Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHhcc
Q 005434          558 HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLAL------PRPGLVLYQNCIELENNL  628 (697)
Q Consensus       558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~------~p~~~~~~~~~i~lE~~~  628 (697)
                      +.+...+++++.....     ........   ........|..+.|...|++++..      .|.....+...+.+...+
T Consensus       230 ~~a~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  304 (366)
T d1hz4a_         230 AAAANWLRHTAKPEFA-----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA  304 (366)
T ss_dssp             HHHHHHHHHSCCCCCT-----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence            4555556655432111     11122222   233355679999999999999853      233344666667777778


Q ss_pred             CCCCCcccHHHHHHHHHHHHhhCC
Q 005434          629 ASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       629 ~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      |      +.+.|...|++|+....
T Consensus       305 g------~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         305 G------RKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             T------CHHHHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHHhh
Confidence            8      89999999999998644

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=0.00075  Score=58.68  Aligned_cols=93  Identities=9%  Similarity=-0.024  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----  204 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~----  204 (697)
                      ...+...|++++...|++.+.|..+...+...+           ..++...|++++.++|+++..|...+....+.    
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            567889999999999999999999998765421           24688999999999999999998777655321    


Q ss_pred             ------cCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434          205 ------NLNVTAARALMQNGLRVCPTSEELWVEY  232 (697)
Q Consensus       205 ------~~~~~~aR~~~~r~l~~~p~~~~lW~~y  232 (697)
                            .++++.|...|++++...|++...+...
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence                  1346889999999999999876555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.35  E-value=0.0011  Score=58.04  Aligned_cols=96  Identities=8%  Similarity=0.023  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDI----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~  202 (697)
                      ...+...|+.|+..+|...                .++...+....+.+ +..+...+.++|..+|.++..|...+....
T Consensus        33 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~  112 (153)
T d2fbna1          33 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM  112 (153)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHH
Confidence            4567788999998776443                23333333334445 568899999999999999999999999886


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E  236 (697)
                       ..|+++.|+..|+++++.+|++..++..+....
T Consensus       113 -~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1         113 -YFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             799999999999999999999999988775543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0017  Score=57.88  Aligned_cols=102  Identities=12%  Similarity=0.012  Sum_probs=77.3

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-----HHH--------HHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-----IFD--------LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-----lw~--------~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~  456 (697)
                      .++++.|...|++|++.+|...     .+.        .|..+-.-..               ..+..+.|...+++|+.
T Consensus        26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~---------------k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL---------------KLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH---------------hhhhcccccchhhhhhh
Confidence            4778999999999998876431     111        1111111011               23568899999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                      .+|.++..|...+..+...|++++|...+++++ ...|++..+......+.
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al-~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL-QLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999 78999887766554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.16  E-value=0.0013  Score=58.49  Aligned_cols=84  Identities=8%  Similarity=-0.026  Sum_probs=70.2

Q ss_pred             cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (697)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y  232 (697)
                      .|....+|...+....+.| +..+...|.++|..+|.++..|...+.... ..|+++.|...|+++++..|++..+...+
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4555666666666555666 578999999999999999999999999886 78999999999999999999998888877


Q ss_pred             HHHHHH
Q 005434          233 LRMELT  238 (697)
Q Consensus       233 ~~~E~~  238 (697)
                      ..+...
T Consensus       152 ~~~~~~  157 (169)
T d1ihga1         152 LKVKQK  157 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0014  Score=54.94  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=70.6

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhcccCC
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDS--VQLWLLRISVEIRCVTRNS  515 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~---~~~A~~l~~~al~~~~P~~--~~lW~~~i~l~~~~~~~~~  515 (697)
                      .+.+++|...|++|+..+|.++++...|+..+.+.++   +++|..++++++ ...|++  .+.|..........|    
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l-~~~~~~~~~~~~~~Lg~~y~~~g----   86 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK----   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHh----
Confidence            4678999999999999999999999999999987654   456999999999 555543  446655555555555    


Q ss_pred             CCCCccchHHHHHHHHHHHhhcChh
Q 005434          516 FSPSKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       516 ~~~~~~~~~~~~~~f~~al~~~p~~  540 (697)
                            +.+++.+.|+++|+.-|..
T Consensus        87 ------~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          87 ------EYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             ------CHHHHHHHHHHHHHHCTTC
T ss_pred             ------hhHHHHHHHHHHHHhCcCC
Confidence                  4799999999999877643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.13  E-value=0.003  Score=56.06  Aligned_cols=103  Identities=11%  Similarity=0.068  Sum_probs=78.1

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-------------HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-------------lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~  456 (697)
                      .+.++.|...|++|+..++...             ....|.+.-.-..               ..+..+.|...|++++.
T Consensus        28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~---------------~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL---------------KLREYTKAVECCDKALG   92 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH---------------Hhhhcccchhhhhhhhh
Confidence            3678899999999998654311             1112222211111               13567899999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (697)
Q Consensus       457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (697)
                      .+|.+...|...+..+...|++++|...+.+++ ...|++..++...-.+..
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al-~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 789999888776655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.11  E-value=0.0045  Score=54.86  Aligned_cols=99  Identities=7%  Similarity=0.039  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHH---------------HHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIEL---------------WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~l---------------W~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~  203 (697)
                      ...+...|++|+..+|....+               +...+....+.+ +..+...+++++.++|+++..|...+.... 
T Consensus        31 ~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-  109 (168)
T d1kt1a1          31 YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-
Confidence            556778999999877664421               111122123344 578999999999999999999999999885 


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHH
Q 005434          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY  239 (697)
Q Consensus       204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~  239 (697)
                      ..|+++.|...|++++...|++..++..+..+....
T Consensus       110 ~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1         110 LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999999999988887776443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.0064  Score=59.04  Aligned_cols=168  Identities=10%  Similarity=-0.020  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhccC---CC---cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          465 AHRYVTLYLQLGKLDEARKLAAKLCSGKL---SD---SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       465 w~~y~~l~~~~~~~~~A~~l~~~al~~~~---P~---~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                      |...+.++...|++++|.+.+.+|+ ..+   .+   ....|..........+          +.+.+.+.|++++...+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~-~~~~~~~~~~~~a~~~~~~g~~y~~~~----------~~~~A~~~~~~a~~~~~  108 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGG----------NSVNAVDSLENAIQIFT  108 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHhC----------CcHHHHHHHHHhhHHhh
Confidence            3334677888999999999999988 322   11   2345555555554444          46788888999887543


Q ss_pred             hhh----hHHHHHHHHHHHHh-hh--HHHHHHHHHHHHhhhhCCCCCCCCChHH---HHHHHHHHhCCHHHHHHHHHHHH
Q 005434          539 ALE----SESLWLMALKFFMN-QK--HYFDKLVEIALISVAKDGGGESGFSLPS---AIINLVIQKDGIQQAREMYKRFL  608 (697)
Q Consensus       539 ~~~----~~~lW~~y~~~~~~-~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~---~yl~~~~~~~~~~~AR~iy~~~i  608 (697)
                      ...    ....+...+..+.. .+  +.+...|++|+........   ......   .........|++++|.++|++++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~  185 (290)
T d1qqea_         109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc---hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            221    23333333333322 22  5677888888876544321   111222   23445677899999999999999


Q ss_pred             hCCCCCH-------HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434          609 ALPRPGL-------VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (697)
Q Consensus       609 ~~~p~~~-------~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~  652 (697)
                      ...+...       ..+...+......+      +...|...|++++..+|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~------d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         186 KSSMGNRLSQWSLKDYFLKKGLCQLAAT------DAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HTTSSCTTTGGGHHHHHHHHHHHHHHTT------CHHHHHHHHHGGGCC--
T ss_pred             HhCccchhhhhhHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCC
Confidence            9766542       23333343444455      88999999999998877

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.87  E-value=0.0058  Score=53.18  Aligned_cols=109  Identities=12%  Similarity=0.038  Sum_probs=77.5

Q ss_pred             chHHHHHHHHHHHHhhcCCchh------HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~------lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~  463 (697)
                      .+++..|...|++||..++...      .+..........+.... .      .-...+..+.|...|++|+..+|.+..
T Consensus        30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla-~------~~~~l~~~~~Al~~~~~al~~~p~~~k  102 (153)
T d2fbna1          30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA-T------CYNKNKDYPKAIDHASKVLKIDKNNVK  102 (153)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH-H------HHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHH-H------HHHHhcccchhhhhhhccccccchhhh
Confidence            3678999999999998775322      22111111111000000 0      000135578899999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV  506 (697)
Q Consensus       464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l  506 (697)
                      .|...+..+...|++++|...+++++ ...|++..++..+-.+
T Consensus       103 a~~~~g~~~~~lg~~~~A~~~~~~al-~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1         103 ALYKLGVANMYFGFLEEAKENLYKAA-SLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             hhHHhHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999 7999998887665433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0005  Score=73.14  Aligned_cols=85  Identities=8%  Similarity=-0.019  Sum_probs=44.3

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE  672 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (697)
                      ..++.+.|-.-|.+++...|.  ..+....++....+      +.+.|+..|++|+...|+++..|......-...|+..
T Consensus       132 ~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~------~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~  203 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRN------QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL  203 (497)
T ss_dssp             -----------CCHHHHHHHH--HHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHH
T ss_pred             hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcc------cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHH
Confidence            345555555556555553322  22333344444444      6667777777777777766666766666666667777


Q ss_pred             hHHHHHHHHHhhc
Q 005434          673 TATAVYWRARKTL  685 (697)
Q Consensus       673 ~a~~vy~ral~~~  685 (697)
                      .|...|.||+..-
T Consensus       204 ~A~~~y~ral~~~  216 (497)
T d1ya0a1         204 TTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHhCC
Confidence            7777777776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.79  E-value=0.0048  Score=53.27  Aligned_cols=98  Identities=9%  Similarity=-0.069  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL----------GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~----------~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (697)
                      +..+.|+..|++|+..+|.+++.|..++..+...          +.+++|...+++|+ ...|++...|..........+
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl-~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HhcchhhHHHhhHHHHHHHcc
Confidence            4578999999999999999999999999887643          44678999999999 789999988877655544333


Q ss_pred             ccCCCCC-CccchHHHHHHHHHHHhhcChh
Q 005434          512 TRNSFSP-SKADILSIFELLKCILTKVSAL  540 (697)
Q Consensus       512 ~~~~~~~-~~~~~~~~~~~f~~al~~~p~~  540 (697)
                      ....... -....+.+.+.|++|+..-|..
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            2100000 0013566777888888766643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.027  Score=50.74  Aligned_cols=92  Identities=14%  Similarity=-0.005  Sum_probs=77.3

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC----------------
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN----------------  654 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~----------------  654 (697)
                      ....|++++|...|+++|+..|.....|.....+...++      +.+.|.+.|++|+...+.+                
T Consensus        46 ~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g------~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~  119 (192)
T d1hh8a_          46 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA  119 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEH
T ss_pred             HHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc------cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccch
Confidence            567899999999999999999999998888887878888      8999999999999865422                


Q ss_pred             chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          655 TSLWRDYYSTETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       655 ~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      .+++..........|+.+.|...+.+|++.-+++
T Consensus       120 ~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            1456677777888999999999999998876554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0033  Score=52.99  Aligned_cols=92  Identities=14%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH-------HHHHHH
Q 005434          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL-------WRDYYS  663 (697)
Q Consensus       591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l-------W~~y~~  663 (697)
                      ....|++++|...|+++|...|.....+...+..-..++      +.+.|-..|++|+...|.++..       +..-.+
T Consensus        14 ~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~------~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG------DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC------chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            346799999999999999999999998888888888888      9999999999999988855543       444445


Q ss_pred             HHHhcCChhhHHHHHHHHHhhcCCc
Q 005434          664 TETKLGTSETATAVYWRARKTLKDS  688 (697)
Q Consensus       664 fE~~~G~~~~a~~vy~ral~~~~~~  688 (697)
                      .....|+.+.|...|.+++..-+++
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            6677899999999999998765544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0026  Score=53.63  Aligned_cols=84  Identities=10%  Similarity=-0.025  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHH-------HHHHhcCCHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAA-------WEFDHNLNVTAA  211 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~-------~e~~~~~~~~~a  211 (697)
                      ...+...|.+++..+|.+..+|..........| +..+...|++++..+|+++..|...+.       .. ...++++.|
T Consensus        20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~-~~~~~~~~A   98 (128)
T d1elra_          20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY-FKEEKYKDA   98 (128)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH-HHhCCHHHH
Confidence            577889999999999999999999999888877 688999999999999988776665544       34 367899999


Q ss_pred             HHHHHHhhhhCCC
Q 005434          212 RALMQNGLRVCPT  224 (697)
Q Consensus       212 R~~~~r~l~~~p~  224 (697)
                      ...|.+++..+|+
T Consensus        99 ~~~~~kal~~~~~  111 (128)
T d1elra_          99 IHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999886

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.30  E-value=0.015  Score=51.29  Aligned_cols=65  Identities=11%  Similarity=-0.056  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (697)
                      +..+.|...|++|++.+|.++..|...+..+...|++++|...+.+++ ...|++..+......+.
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al-~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999 78999887766554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.026  Score=50.87  Aligned_cols=88  Identities=13%  Similarity=0.041  Sum_probs=76.8

Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh
Q 005434          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS  671 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~  671 (697)
                      ...|+++.|...|.++   .|+...+|.....+...+|      +.+.|-..|++|++.+|..+..|......-...|+.
T Consensus        16 ~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g------~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILK------NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcC------CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            4678999999999864   4566777777777777888      999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCc
Q 005434          672 ETATAVYWRARKTLKDS  688 (697)
Q Consensus       672 ~~a~~vy~ral~~~~~~  688 (697)
                      +.|...|++|+..++..
T Consensus        87 ~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhCccC
Confidence            99999999999877644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.022  Score=59.85  Aligned_cols=66  Identities=8%  Similarity=-0.175  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (697)
                      +..+.|+..|++|+..+|.++..|.+.+.++...|+..+|...|.+|+ ...|+....+.....+..
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral-~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI-AVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-SSSBCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHH
Confidence            457788999999999999999999999998888999999988899988 555665555555444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.069  Score=51.24  Aligned_cols=156  Identities=9%  Similarity=-0.001  Sum_probs=98.7

Q ss_pred             chHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH---HH-
Q 005434          522 DILSIFELLKCILTKVS----ALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN---LV-  591 (697)
Q Consensus       522 ~~~~~~~~f~~al~~~p----~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~---~~-  591 (697)
                      +.+++.+.|++|+....    +......|......+...+  +.+...|++++........   .......+..   .+ 
T Consensus        52 ~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILE  128 (290)
T ss_dssp             CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---chhHHHHHHHHHHhHh
Confidence            35777788888876421    1122344444444443333  5667778888876654321   1111112222   12 


Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-------hHH
Q 005434          592 IQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-------SLW  658 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-------~lW  658 (697)
                      ...|++++|...|++++...+..      ...+...+.+...+|      +.+.|..+|++++...+.++       .++
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g------~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG------QYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC------hHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            23589999999999998753221      345777788888888      99999999999999877332       234


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434          659 RDYYSTETKLGTSETATAVYWRARKTLK  686 (697)
Q Consensus       659 ~~y~~fE~~~G~~~~a~~vy~ral~~~~  686 (697)
                      ..-+-.....|+...|...++++++..+
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4444444567999999999999877654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.93  E-value=0.01  Score=56.85  Aligned_cols=68  Identities=9%  Similarity=0.008  Sum_probs=62.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (697)
                      .+.++.|...|++++..+|.+...+..+++++...|++++|.+.+++++ ...|++...|..+..+...
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~-~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI-KLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999 7899999999888766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.045  Score=42.89  Aligned_cols=71  Identities=13%  Similarity=0.021  Sum_probs=53.7

Q ss_pred             HHHHHHhc-CchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434          165 MEFCRQRK-NGRMKKVLAQVIRFHPKV-------PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (697)
Q Consensus       165 ~~~~~~~~-~~~~~~~~~ral~~~p~~-------~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E  236 (697)
                      ...+.+.| +..+...|++|+...|.+       ..++...+.... ..|+++.|...++++|+..|+++.++.....++
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            33344445 578899999999886654       345555555554 789999999999999999999998888776655

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.09  E-value=0.019  Score=54.82  Aligned_cols=122  Identities=14%  Similarity=0.023  Sum_probs=83.1

Q ss_pred             chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y  468 (697)
                      .|+++.|...|+++|+..|+.. .+..+..++..                  .+..++|...|++++..+|.+...+..|
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~------------------~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI------------------DGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4789999999999999999875 66666666543                  4668999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA  539 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~  539 (697)
                      ..++...+..+++..-..+......|+....+...+......+          +.+++.+.++++....|.
T Consensus        71 ~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~g----------d~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ----------DYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHhcCCC
Confidence            9887655544443222222110112333333333333344444          478888889998876654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.033  Score=43.69  Aligned_cols=70  Identities=10%  Similarity=-0.059  Sum_probs=49.8

Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434          592 IQKDGIQQAREMYKRFLALPRPG-------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST  664 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~-------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f  664 (697)
                      .+.|++++|..-|++++...|..       ..++.........+|      +.++|.+.|++++...|.++..+.....+
T Consensus        16 ~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g------~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG------DLDKALLLTKKLLELDPEHQRANGNLKYF   89 (95)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC------ChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            46778888888888888753322       334555555556667      88888888888888888888877776666


Q ss_pred             HHh
Q 005434          665 ETK  667 (697)
Q Consensus       665 E~~  667 (697)
                      |..
T Consensus        90 ~~~   92 (95)
T d1tjca_          90 EYI   92 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.69  E-value=0.12  Score=45.76  Aligned_cols=87  Identities=16%  Similarity=0.083  Sum_probs=64.3

Q ss_pred             HhCCHHHHHHHHHHHHhCCCCC----------------------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434          593 QKDGIQQAREMYKRFLALPRPG----------------------LVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (697)
Q Consensus       593 ~~~~~~~AR~iy~~~i~~~p~~----------------------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~  650 (697)
                      ..|+.+.|...|.+++.+.+..                      ...+...+.....+|      +.+.|-.++++++..
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g------~~~~Al~~~~~al~~   96 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG------RASAVIAELEALTFE   96 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CchHHHHHHHHHHHh
Confidence            4566666666666666653321                      123455555556666      888999999999999


Q ss_pred             CCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434          651 YDQNTSLWRDYYSTETKLGTSETATAVYWRARKTL  685 (697)
Q Consensus       651 ~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~  685 (697)
                      +|.+..+|...+.--...|+...|..+|+++.+.+
T Consensus        97 ~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          97 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            88888999998888888999999999999887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.41  E-value=0.18  Score=44.53  Aligned_cols=62  Identities=10%  Similarity=-0.074  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434          159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (697)
Q Consensus       159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~  221 (697)
                      ..|...++.....| +..+...+++++..+|.+..+|...+.-.. ..|+...|...|+++.+.
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Confidence            55666666666666 578999999999999999999999999886 899999999999998443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.40  E-value=0.67  Score=37.71  Aligned_cols=89  Identities=8%  Similarity=-0.045  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q 005434          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARAL  214 (697)
Q Consensus       140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~p~~~-~lW~~~a~~e~~~~~~~~~aR~~  214 (697)
                      ..++..-|+..+...|+ ++..+.|+=-+.++.    ..+...+|+.++..+|... ..|...+--.+ ..|+.+.|+..
T Consensus        18 l~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~   95 (124)
T d2pqrb1          18 LEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRY   95 (124)
T ss_dssp             HHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            34445555555555564 788888876555543    2467889999999998764 45554444454 68999999999


Q ss_pred             HHHhhhhCCCCHHHHH
Q 005434          215 MQNGLRVCPTSEELWV  230 (697)
Q Consensus       215 ~~r~l~~~p~~~~lW~  230 (697)
                      ++++|+..|++.....
T Consensus        96 ~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          96 VDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHCTTCHHHHH
T ss_pred             HHHHHccCCCcHHHHH
Confidence            9999999999876643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=91.91  E-value=4.4  Score=36.80  Aligned_cols=215  Identities=13%  Similarity=-0.013  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCC
Q 005434          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS  517 (697)
Q Consensus       442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~  517 (697)
                      ++.++|...|++|.+.+  +...+...+.++..    ..++..|...+.++....+|   ..+.....+......     
T Consensus        16 ~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~~~~~~~~~-----   85 (265)
T d1ouva_          16 KDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLGNLYYSGQG-----   85 (265)
T ss_dssp             TCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHTSS-----
T ss_pred             CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccccccccccc-----
Confidence            45788999999998763  56667777777776    56889999999998843333   333322222222111     


Q ss_pred             CCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHH
Q 005434          518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-----HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI  592 (697)
Q Consensus       518 ~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-----~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~  592 (697)
                       ...+.+.+...|..+...-++.....+-..+   .....     ..+...+.....   ..     ....+........
T Consensus        86 -~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~---~~~~~~~~~~~~a~~~~~~~~~---~~-----~~~~~~~L~~~~~  153 (265)
T d1ouva_          86 -VSQNTNKALQYYSKACDLKYAEGCASLGGIY---HDGKVVTRDFKKAVEYFTKACD---LN-----DGDGCTILGSLYD  153 (265)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHCSSSCCCHHHHHHHHHHHHH---TT-----CHHHHHHHHHHHH
T ss_pred             -cchhhHHHHHHHhhhhhhhhhhHHHhhcccc---cCCCcccchhHHHHHHhhhhhc---cc-----ccchhhhhhhhhc
Confidence             1114677778888887654332211221111   21111     223333333322   11     1111111122222


Q ss_pred             ----HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH-HHh
Q 005434          593 ----QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST-ETK  667 (697)
Q Consensus       593 ----~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f-E~~  667 (697)
                          ...+...+...++.+.+...+...+.+..+.+.- .+   ...+.+.|...|+++.+..  ++..+.....+ +..
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g-~~---~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHG-EG---ATKNFKEALARYSKACELE--NGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CS---SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred             cCCCcccccccchhhhhccccccccccccchhhhcccC-cc---cccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcC
Confidence                2357788888888888754333334444444332 22   1238999999999999863  34444333333 222


Q ss_pred             cC---ChhhHHHHHHHHHhh
Q 005434          668 LG---TSETATAVYWRARKT  684 (697)
Q Consensus       668 ~G---~~~~a~~vy~ral~~  684 (697)
                      .|   |.+.|...|++|+..
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHC
Confidence            33   788999999999654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.96  E-value=0.46  Score=40.41  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             HHhCCHHHHHHHHHHHHhCCCCC------------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC----CCc
Q 005434          592 IQKDGIQQAREMYKRFLALPRPG------------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD----QNT  655 (697)
Q Consensus       592 ~~~~~~~~AR~iy~~~i~~~p~~------------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~----~~~  655 (697)
                      ...|.+++|-..|+++|.+.|..            ...|.........+|      +.+.+...|+.++..++    ..+
T Consensus        20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg------~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------SFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC------ccchhhHhhhhhhhcccccccccc
Confidence            45688999999999999865432            124445555556777      88999999999998765    121


Q ss_pred             -------hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434          656 -------SLWRDYYSTETKLGTSETATAVYWRARKTLKD  687 (697)
Q Consensus       656 -------~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~  687 (697)
                             ..+.....--...|+.+.|...|++|+...++
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                   13444556666789999999999999988653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.50  E-value=5.1  Score=32.19  Aligned_cols=96  Identities=10%  Similarity=-0.049  Sum_probs=68.1

Q ss_pred             chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH-HHHHHH
Q 005434          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-DIAHRY  468 (697)
Q Consensus       390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~-~lw~~y  468 (697)
                      ...+...+.-|+..++..++.+-...|+--+..     +.          ...+++++..+++.++..+|... +.|...
T Consensus        15 ~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~-----S~----------~~~d~~~gI~lLe~~~~~~p~~~rd~lY~L   79 (124)
T d2pqrb1          15 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIK-----ST----------DVNDERLGVKILTDIYKEAESRRRECLYYL   79 (124)
T ss_dssp             HHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHH-----SS----------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc-----CC----------cHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            356677777777776555555433445432222     11          14668899999999998888664 677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (697)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (697)
                      +--+.+.|++++|+..+++++ ...|.+.....
T Consensus        80 av~yyklgdy~~A~~~~~~~L-~ieP~n~qA~~  111 (124)
T d2pqrb1          80 TIGCYKLGEYSMAKRYVDTLF-EHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHH-ccCCCcHHHHH
Confidence            777778999999999999999 78999866543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.42  E-value=8.5  Score=34.67  Aligned_cols=232  Identities=14%  Similarity=0.043  Sum_probs=123.1

Q ss_pred             ChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434          363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (697)
Q Consensus       363 ~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~  442 (697)
                      +|+.|+.++.....             .+++++|...|++|.+.-...-.+.. -.+... ..    .         ...
T Consensus         1 ~p~~~~~lG~~~~~-------------~~d~~~A~~~~~kAa~~g~~~A~~~L-g~~y~~-G~----~---------~~~   52 (265)
T d1ouva_           1 DPKELVGLGAKSYK-------------EKDFTQAKKYFEKACDLKENSGCFNL-GVLYYQ-GQ----G---------VEK   52 (265)
T ss_dssp             CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHH-TS----S---------SCC
T ss_pred             CHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHc-CC----C---------cch
Confidence            46778888877664             36799999999999764322112111 111111 10    0         134


Q ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (697)
Q Consensus       443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~  518 (697)
                      +...+...|+.+...+  .+..+...+.+...    .++.+.|...++.+. ..-+.....+....  ... +..     
T Consensus        53 d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~-~~g~~~a~~~l~~~--~~~-~~~-----  121 (265)
T d1ouva_          53 NLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYAEGCASLGGI--YHD-GKV-----  121 (265)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHH--HHH-CSS-----
T ss_pred             hHHHHHHhhccccccc--ccchhhccccccccccccchhhHHHHHHHhhhh-hhhhhhHHHhhccc--ccC-CCc-----
Confidence            5788999999988754  44445554544443    357888999999988 33333222222111  111 110     


Q ss_pred             CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh-hh-----HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH-HH
Q 005434          519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMN-QK-----HYFDKLVEIALISVAKDGGGESGFSLPSAIIN-LV  591 (697)
Q Consensus       519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~-~~-----~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~-~~  591 (697)
                      .......+...+.+.......    ..|......+.. ..     ......++.+...   .      .......+- +.
T Consensus       122 ~~~~~~~a~~~~~~~~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---g------~~~A~~~lg~~y  188 (265)
T d1ouva_         122 VTRDFKKAVEYFTKACDLNDG----DGCTILGSLYDAGRGTPKDLKKALASYDKACDL---K------DSPGCFNAGNMY  188 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T------CHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhhhhhccccc----chhhhhhhhhccCCCcccccccchhhhhccccc---c------ccccccchhhhc
Confidence            011345555556655443332    223222222221 11     2344455555431   0      111111121 22


Q ss_pred             HH----hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434          592 IQ----KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (697)
Q Consensus       592 ~~----~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~  650 (697)
                      ..    ..++++|...|+++.+...+...+.+..+... ..+   ...+.+.|...|++|+..
T Consensus       189 ~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~-G~g---~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         189 HHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN-GEG---VTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSS---SSCCSTTHHHHHHHHHHH
T ss_pred             ccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHc-CCC---CccCHHHHHHHHHHHHHC
Confidence            22    36899999999999998655444555555442 232   223678999999999875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.86  E-value=0.38  Score=40.94  Aligned_cols=87  Identities=13%  Similarity=-0.038  Sum_probs=59.9

Q ss_pred             HhHHHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC-------CCcHHH--
Q 005434          441 EHYISHLLTVYEKAEAMGCLT------------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL-------SDSVQL--  499 (697)
Q Consensus       441 ~~~~~~ar~~ye~al~~~~~~------------~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~-------P~~~~l--  499 (697)
                      .+..+.|...|++|+..+|..            ...|...+..+...|++++|..-+.+++ ..+       |.....  
T Consensus        22 ~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          22 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh-hcccccccccccccchhH
Confidence            356889999999999865442            2467777888999999999999998888 332       332222  


Q ss_pred             --HHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434          500 --WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (697)
Q Consensus       500 --W~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p  538 (697)
                        +..........|          +.+++.+.|++|+...|
T Consensus       101 ~a~~~~g~~~~~lg----------~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1         101 SAVYSRALALDGLG----------RGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHH----------HHHHHHHHHHHHHHhhH
Confidence              333334444444          46888888999887543