Citrus Sinensis ID: 005448

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690------
MRGPLGAVIGRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQ
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcc
cccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEccccccccccccEEEEEccHHccccHHHHHccccccccEEEHccccHHHccHHHHHHcccccccEEEEcccccccccccccccccccHHHHccccccccEEcccccccccccccccccccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHccc
mrgplgavigrypssdgsvpidggiikhnrkcrDVAFLVIFIAFWVAMIVNSsfgfnqgnplrltygldykgnvcgdrhAGLRELELRYWlnpnqvyqsglkgsqfklanarsiclldcpipaedslnwvcdypegeirlSMDDWIDRNYDYfefltpemrnsslqlqgpcypvvfpsvnVYWSCQFIARASNMSLKHWQQMggvtinedllidksIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVgwigndaispiigahdpyyhvyGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLfssgqiiqnncnsnccaydlglkrvncdhccgyrirytPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYwargetspeipllpvvssMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVfgttpdswygkaafyssqGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDThkyrsahnkissplfPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCqdseehqgtaqyappllmetLNDQNEMQRLTQ
MRGPLGAVigrypssdgsvPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVfgttpdswygKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQ
MRGPLGAVIGRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAiltsiaiirriimatsVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQnncnsnccAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQ
******************VPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQ*******************************
***************************HNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETL***********
MRGPLGAVIGRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQ
***PLGA***R*PSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQN*******
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
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MRGPLGAVIGRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query696 2.2.26 [Sep-21-2011]
Q8BY89706 Choline transporter-like yes no 0.906 0.893 0.253 2e-53
Q6IP59710 Choline transporter-like N/A no 0.915 0.897 0.251 2e-51
B4F795705 Choline transporter-like yes no 0.912 0.900 0.255 2e-50
Q6GN42707 Choline transporter-like N/A no 0.922 0.908 0.25 7e-50
Q8NCS7719 Choline transporter-like yes no 0.877 0.849 0.259 1e-49
A5PMW0702 Choline transporter-like no no 0.896 0.888 0.257 3e-49
Q7SYC9697 Choline transporter-like no no 0.906 0.905 0.252 4e-49
B5X3W7706 Choline transporter-like N/A no 0.916 0.903 0.256 9e-49
Q54I48628 Choline transporter-like yes no 0.793 0.878 0.269 2e-48
B0JZD0714 Choline transporter-like yes no 0.915 0.892 0.254 8e-48
>sp|Q8BY89|CTL2_MOUSE Choline transporter-like protein 2 OS=Mus musculus GN=Slc44a2 PE=1 SV=2 Back     alignment and function desciption
 Score =  211 bits (537), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 180/709 (25%), Positives = 330/709 (46%), Gaps = 78/709 (11%)

Query: 10  GRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGNPLRLTYGLD 69
           G++ +     P   G I +NR C DV   V+     V  +      +  G+P ++ Y  D
Sbjct: 10  GKHGTPQKYDPTFKGPI-YNRGCTDVICCVLLFLAIVGYVAVGIIAWTHGDPRKVIYPTD 68

Query: 70  YKGNVCGDRHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLDCPIPAEDSLNW 129
            +G  CG +     +    ++ N              K AN   +    CP P       
Sbjct: 69  SRGEFCGQKGTKNADKPFLFYFN------------IVKCANPLVLLEFHCPTPQ------ 110

Query: 130 VC--DYPEGEIRLSMDDWIDRNYDYF-EFLTPEMRN----SSLQLQGPCYPVVFPSVNVY 182
           +C    P+  + L +     R++DY+ +F  P  +N    + +   G C  V+ PS  + 
Sbjct: 111 ICVKQCPDRYLTL-LSARNTRDFDYYKQFCVPGFQNNKGVTEILRDGECPAVITPSKPLA 169

Query: 183 WSCQFIARASNMSL-----KHWQQMGGVTINEDLLID--KSIHRTINSRSAVLKRYMADI 235
             C     AS   L       ++   G   N   L++  K  ++ + +R   ++ +  D 
Sbjct: 170 QRCFPAIHASKGVLMVGNETTYEDGHGARKNITDLVEGAKKANKILEARQLAMQIF-EDY 228

Query: 236 GKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMF-CYIKVGWI 294
             SW  +I+ G ++ + LS+++++++R     M W+ + +  +L++   +F CY++   +
Sbjct: 229 TVSWYWIII-GLVIAMVLSLLFIVLLRFLAGIMVWVMIVMV-ILVLGYGIFHCYMEYSRL 286

Query: 295 GNDAISPIIGAHDPYYHVYGREINHLR----AVTILMTFVMIVAILTSIAIIRRIIMATS 350
             +A S +    D  +    R   HLR    A  I+++ + +V IL  I + +RI++A +
Sbjct: 287 RGEAGSDV-SLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIA 345

Query: 351 VLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDL 410
           ++K A++ VG V   +++P++ + +L +   +W S ++ L +S   +    +   C    
Sbjct: 346 LIKEASRAVGHVMCSLLYPLVTFFLLCLCIAYWASTSVFLSTSNTAVYKVVDDTACP--- 402

Query: 411 GLKRVNCD-----------HCCGYRIRY-------TPHIAVA--IFFHLFGCYWATQFFI 450
            L R  C+            C   R ++       T H A+     F+ F  +W   F +
Sbjct: 403 -LLRKTCNPETFPLRNESLQCPTARCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVL 461

Query: 451 AASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRF 510
           A     +AG+ ASYYWA  +   ++P  P+ S+  R +RY  GS+A GSLI++ V+ +R 
Sbjct: 462 ALGQVTLAGAFASYYWAMRKPD-DMPAFPLFSAFGRALRYHTGSLAFGSLILAIVQIIRV 520

Query: 511 ILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRA 570
           +LE + +++K       + + K      +    C+E  +K +NRNAYIMIAI G +FC +
Sbjct: 521 MLEYLDQRLK----AAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTS 576

Query: 571 SSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSP 630
           +  A  L++ NI+R+  ++ + D +  LGKL +  S  + AF    TH+ R   +  + P
Sbjct: 577 ARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFF-THRIRIVQDT-APP 634

Query: 631 L----FPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGTAQ 675
           L     P+L      Y++A  FF+V  M +DT+ L F +D E + G+A+
Sbjct: 635 LNYYWVPILTVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAE 683
Choline transporter.
Mus musculus (taxid: 10090)
>sp|Q6IP59|CTL2_XENLA Choline transporter-like protein 2 OS=Xenopus laevis GN=slc44a2 PE=2 SV=1 Back     alignment and function description
>sp|B4F795|CTL2_RAT Choline transporter-like protein 2 OS=Rattus norvegicus GN=Slc44a2 PE=2 SV=1 Back     alignment and function description
>sp|Q6GN42|CTL4_XENLA Choline transporter-like protein 4 OS=Xenopus laevis GN=slc44a4 PE=2 SV=1 Back     alignment and function description
>sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=2 Back     alignment and function description
>sp|A5PMW0|CTL5A_DANRE Choline transporter-like protein 5-A (Fragment) OS=Danio rerio GN=slc44a5a PE=3 SV=1 Back     alignment and function description
>sp|Q7SYC9|CTL2_DANRE Choline transporter-like protein 2 OS=Danio rerio GN=slc44a2 PE=2 SV=1 Back     alignment and function description
>sp|B5X3W7|CTL2_SALSA Choline transporter-like protein 2 OS=Salmo salar GN=slc44a2 PE=2 SV=1 Back     alignment and function description
>sp|Q54I48|CTL2_DICDI Choline transporter-like protein 2 OS=Dictyostelium discoideum GN=slc44a2 PE=3 SV=1 Back     alignment and function description
>sp|B0JZD0|CTL5_XENTR Choline transporter-like protein 5 OS=Xenopus tropicalis GN=slc44a5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query696
255575304697 conserved hypothetical protein [Ricinus 0.998 0.997 0.862 0.0
225461403697 PREDICTED: choline transporter-like prot 0.998 0.997 0.840 0.0
224114968697 predicted protein [Populus trichocarpa] 0.994 0.992 0.841 0.0
356517164699 PREDICTED: choline transporter-like prot 0.998 0.994 0.842 0.0
449446938702 PREDICTED: choline transporter-like prot 0.998 0.990 0.846 0.0
356543286699 PREDICTED: choline transporter-like prot 0.998 0.994 0.839 0.0
147827328738 hypothetical protein VITISV_026350 [Viti 0.998 0.941 0.794 0.0
356544028699 PREDICTED: choline transporter-like prot 0.997 0.992 0.832 0.0
356549737699 PREDICTED: choline transporter-like prot 0.997 0.992 0.830 0.0
18400752700 Plasma-membrane choline transporter fami 0.998 0.992 0.797 0.0
>gi|255575304|ref|XP_002528555.1| conserved hypothetical protein [Ricinus communis] gi|223531999|gb|EEF33810.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1264 bits (3272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/698 (86%), Positives = 657/698 (94%), Gaps = 3/698 (0%)

Query: 1   MRGPLGAVIGRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGN 60
           MRGPLGAVIGRYPSSDGS  IDG II+ NRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGN
Sbjct: 1   MRGPLGAVIGRYPSSDGSTQIDG-IIRRNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGN 59

Query: 61  PLRLTYGLDYKGNVCGDRHA--GLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLD 118
           PLRLTYGLDYKGNVCGD+HA   L +LEL YWLNPNQVY SGLK +QFKLANARS+CLLD
Sbjct: 60  PLRLTYGLDYKGNVCGDKHAHPDLDQLELMYWLNPNQVYLSGLKNTQFKLANARSVCLLD 119

Query: 119 CPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPS 178
           CPIP+ED+LNWVCDYPEG+IRLSMDDWIDRNYDYFEFLTPEMRN+SL+LQGPCYPV+FPS
Sbjct: 120 CPIPSEDALNWVCDYPEGDIRLSMDDWIDRNYDYFEFLTPEMRNTSLKLQGPCYPVIFPS 179

Query: 179 VNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKS 238
           VNV+W CQFIA ASN+SL+HWQQMGGV INED++IDKSIH++IN+RS+VLKRYMADIGKS
Sbjct: 180 VNVFWRCQFIAHASNVSLRHWQQMGGVNINEDIIIDKSIHKSINARSSVLKRYMADIGKS 239

Query: 239 WPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDA 298
           WPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVA+F++LIISVTMF Y+K GWIGNDA
Sbjct: 240 WPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVAVFDILIISVTMFYYLKAGWIGNDA 299

Query: 299 ISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKI 358
           ISPIIG HDPYYH+ GREINHLRA T+LMTF+M+VAILTSIAI+RRI+MATSVLKVAAK+
Sbjct: 300 ISPIIGHHDPYYHISGREINHLRAFTVLMTFIMVVAILTSIAIVRRILMATSVLKVAAKV 359

Query: 359 VGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCD 418
           +GEVQAL+IFP+IPY +LAIFYMFW SAA HLFSSGQI+QN+CNSNCCAYDLG KRVNCD
Sbjct: 360 IGEVQALIIFPVIPYALLAIFYMFWFSAAFHLFSSGQIVQNDCNSNCCAYDLGAKRVNCD 419

Query: 419 HCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLL 478
            CCG+ IRYTPHIAVAIFFHLFG YWATQFFIA S+TVIAGSVASYYWARGE SPEIP L
Sbjct: 420 RCCGFSIRYTPHIAVAIFFHLFGGYWATQFFIACSATVIAGSVASYYWARGEASPEIPFL 479

Query: 479 PVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSS 538
           PV SSMK L+RYSLGSVALGSLIVSFVES+RF+LESIRRK+KV  TTPDSW GK   ++S
Sbjct: 480 PVFSSMKWLMRYSLGSVALGSLIVSFVESIRFMLESIRRKLKVASTTPDSWIGKMVHHTS 539

Query: 539 QGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFL 598
           +  LRC++ T+KSVNRNAYIMIAITGKSFCRASSIATELII+NILRIGRVNVIGDVILFL
Sbjct: 540 RFCLRCVDCTIKSVNRNAYIMIAITGKSFCRASSIATELIISNILRIGRVNVIGDVILFL 599

Query: 599 GKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDT 658
           GKLCVSLSSAVFAFLMLDTHKYRS+HNKI+SPLFPVLVCW LGY+VA+LFFAVVEMSIDT
Sbjct: 600 GKLCVSLSSAVFAFLMLDTHKYRSSHNKITSPLFPVLVCWVLGYIVATLFFAVVEMSIDT 659

Query: 659 IILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQ 696
           IILSFCQDSEEHQGTAQYAPPLL+ETLNDQNEMQRLTQ
Sbjct: 660 IILSFCQDSEEHQGTAQYAPPLLIETLNDQNEMQRLTQ 697

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461403|ref|XP_002284857.1| PREDICTED: choline transporter-like protein 2 [Vitis vinifera] gi|302143029|emb|CBI20324.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114968|ref|XP_002316905.1| predicted protein [Populus trichocarpa] gi|222859970|gb|EEE97517.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517164|ref|XP_003527259.1| PREDICTED: choline transporter-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446938|ref|XP_004141227.1| PREDICTED: choline transporter-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543286|ref|XP_003540093.1| PREDICTED: choline transporter-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|147827328|emb|CAN73032.1| hypothetical protein VITISV_026350 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544028|ref|XP_003540458.1| PREDICTED: choline transporter-like protein 5-A-like [Glycine max] Back     alignment and taxonomy information
>gi|356549737|ref|XP_003543247.1| PREDICTED: choline transporter-like protein 5-A-like [Glycine max] Back     alignment and taxonomy information
>gi|18400752|ref|NP_566511.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gi|15028189|gb|AAK76591.1| unknown protein [Arabidopsis thaliana] gi|25055020|gb|AAN71973.1| unknown protein [Arabidopsis thaliana] gi|332642140|gb|AEE75661.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query696
TAIR|locus:2090171700 AT3G15380 [Arabidopsis thalian 0.997 0.991 0.77 3.1e-305
DICTYBASE|DDB_G0289013628 slc44a2 "solute carrier family 0.326 0.361 0.330 1.3e-59
ZFIN|ZDB-GENE-030131-3065717 slc44a2 "solute carrier family 0.925 0.898 0.259 1.1e-55
ZFIN|ZDB-GENE-030131-9816697 zgc:63569 "zgc:63569" [Danio r 0.672 0.671 0.27 2.9e-54
RGD|1303167707 Slc44a4 "solute carrier family 0.932 0.917 0.261 3.1e-51
UNIPROTKB|Q6MG71707 Slc44a4 "Choline transporter-l 0.932 0.917 0.261 3.1e-51
MGI|MGI:1915932706 Slc44a2 "solute carrier family 0.903 0.890 0.248 5.8e-50
UNIPROTKB|F1S584706 SLC44A2 "Choline transporter-l 0.939 0.926 0.245 2e-49
UNIPROTKB|A5D7H3706 SLC44A2 "Choline transporter-l 0.929 0.916 0.243 2.3e-48
MGI|MGI:1917379707 Slc44a4 "solute carrier family 0.918 0.903 0.256 2.3e-48
TAIR|locus:2090171 AT3G15380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2929 (1036.1 bits), Expect = 3.1e-305, P = 3.1e-305
 Identities = 539/700 (77%), Positives = 615/700 (87%)

Query:     1 MRGPLGAVIGRYPSSDGSVPIDGGIIKHNRKCRDVAFLVIFIAFWVAMIVNSSFGFNQGN 60
             MRGPLGAVIGRY SSDGS P DG IIKHNRKCRD+ FL+IFIAFWV+MIVNSSFGFNQGN
Sbjct:     1 MRGPLGAVIGRYTSSDGSAPNDG-IIKHNRKCRDITFLIIFIAFWVSMIVNSSFGFNQGN 59

Query:    61 PLRLTYGLDYKGNVCGD--RHAGLRELELRYWLNPNQVYQSGLKGSQFKLANARSICLLD 118
             PLRLTYGLDY+GNVCG   RH  L +LELRYWLNPNQVY+SGLK  + KLANAR+ICLLD
Sbjct:    60 PLRLTYGLDYEGNVCGSKHRHRDLTQLELRYWLNPNQVYESGLKDGELKLANARTICLLD 119

Query:   119 CPIPAEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPS 178
             CP P++D+LNWVCDYP+GEIRL M+DWIDRNYDYFEFLTPEMRNSSLQLQGPCYPV+FPS
Sbjct:   120 CPAPSDDTLNWVCDYPDGEIRLKMNDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVIFPS 179

Query:   179 VNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMADIGKS 238
             VNVYWSCQ+IARASN SL+HWQQMGGV I ED++IDKSI R++NSR++VLKRY+ADIGKS
Sbjct:   180 VNVYWSCQYIARASNSSLRHWQQMGGVNIQEDMIIDKSIRRSMNSRASVLKRYVADIGKS 239

Query:   239 WPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMFCYIKVGWIGNDA 298
             WPVLIVCGGL+PLFLS+IWLL+IRHFV AMPWITV LFN+L+ISVT+F Y+K GWIGNDA
Sbjct:   240 WPVLIVCGGLVPLFLSIIWLLLIRHFVAAMPWITVVLFNMLLISVTVFYYLKAGWIGNDA 299

Query:   299 ISPIIGAHDPYYHVYGREINHLRAVTILMTFVMIVAXXXXXXXXXXXXXXXXVLKVAAKI 358
             ++PIIG HDPY+HVYGRE+ H+R V ILMTF+ +VA                VLKVAAK+
Sbjct:   300 VTPIIGEHDPYFHVYGRELTHVRGVAILMTFISVVAILTSIAIIRRILMATSVLKVAAKV 359

Query:   359 VGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQXXXXXXXX-AYDLGLKRVNC 417
             +GEVQAL+IFP IP+ MLAIFYMFWISAALHLFSSGQ++Q         AYDL LK+VNC
Sbjct:   360 IGEVQALIIFPAIPFAMLAIFYMFWISAALHLFSSGQVVQNNCNNTNCCAYDLVLKKVNC 419

Query:   418 DHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPL 477
             D CCGY I YTPHI +AIFFHLFGCYWATQFFIA+S+TVIAGSVASYYWA+GE SPEIP 
Sbjct:   420 DRCCGYSIHYTPHITIAIFFHLFGCYWATQFFIASSATVIAGSVASYYWAQGEASPEIPF 479

Query:   478 LPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYS 537
             LPV +SMKRL RY+LGSVALGSLIVSFVESVRFILE+IRRK KV GT PD W+ + A Y+
Sbjct:   480 LPVFASMKRLARYNLGSVALGSLIVSFVESVRFILEAIRRKTKVSGTIPDHWFWRMAHYT 539

Query:   538 SQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILF 597
             S+G L+ +EWT+KSVNRNAYIMIAITGKSFC++S+IATELII+NILRIG+VNVIGDVILF
Sbjct:   540 SRGCLKSVEWTIKSVNRNAYIMIAITGKSFCKSSAIATELIISNILRIGKVNVIGDVILF 599

Query:   598 LGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSID 657
             LGKLCVSL SA+F FLMLD+H+YR++HNK+SSPL PVL CW LGY+VA+LFFAVVEMSID
Sbjct:   600 LGKLCVSLFSALFGFLMLDSHRYRASHNKVSSPLLPVLACWALGYIVATLFFAVVEMSID 659

Query:   658 TIILSFCQDSEEHQGTAQYAPPLLMETL--NDQNEMQRLT 695
             TIILSFCQDSEE+QG AQ+APPLL+ETL  N + E+Q LT
Sbjct:   660 TIILSFCQDSEENQGNAQHAPPLLLETLDSNQEEEVQSLT 699
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
DICTYBASE|DDB_G0289013 slc44a2 "solute carrier family 44 protein member 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3065 slc44a2 "solute carrier family 44, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9816 zgc:63569 "zgc:63569" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1303167 Slc44a4 "solute carrier family 44, member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6MG71 Slc44a4 "Choline transporter-like protein 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915932 Slc44a2 "solute carrier family 44, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S584 SLC44A2 "Choline transporter-like protein 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7H3 SLC44A2 "Choline transporter-like protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1917379 Slc44a4 "solute carrier family 44, member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XI3926
hypothetical protein (697 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query696
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 6e-87
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information 
 Score =  275 bits (706), Expect = 6e-87
 Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 26/347 (7%)

Query: 322 AVTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYM 381
            V I+ T + ++ +L  I + +RI +A ++LK A+  V +  +L++ P+I ++ LA F  
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 382 FWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFG 441
            WI  A+ L++SG    NN                         +Y   +   + + LFG
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGE----------------YKYDSKLIGLLVYLLFG 104

Query: 442 CYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLI 501
            +W ++  +A     IAG VA++Y+A G     +P  P +SS KR + YS GS+  GSLI
Sbjct: 105 LFWTSEVILAVQHVTIAGVVATWYFAGG--KRNMPKFPTLSSFKRALTYSFGSICFGSLI 162

Query: 502 VSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIA 561
           V+ ++ +R +LE +RRK+K       + + K      +  L C+E  V+ +NRNAY+ IA
Sbjct: 163 VAIIQFIRILLEYLRRKLK----GDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIA 218

Query: 562 ITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYR 621
           I GK FC ++    EL+  N LR    + +G  +LFLGKL VS  + + A+L L      
Sbjct: 219 IYGKGFCTSAKDTWELLKRNGLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTD-- 276

Query: 622 SAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSE 668
             ++ +S    PV + + + Y++AS+F +V E  +DTI + F +D E
Sbjct: 277 --NSDLSYYAVPVALAFLISYLIASVFMSVYESGVDTIFVCFAEDPE 321

This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 696
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-93  Score=790.82  Aligned_cols=561  Identities=32%  Similarity=0.565  Sum_probs=458.2

Q ss_pred             hhhccccCCCcccccccCCCCCccCCCCCCCcccceeeecCchh-----hhhcCCCCccccccccccccccccccccccC
Q 005448           52 SSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQ-----VYQSGLKGSQFKLANARSICLLDCPIPAEDS  126 (696)
Q Consensus        52 ~~~a~~~G~p~rL~~g~Ds~Gn~CG~~~~d~~d~~ylyf~~p~~-----~~~~~~~t~~~~~~~~~~vCV~~CP~~~~~~  126 (696)
                      +.+++.+|||.|+++|+||+||.||+++  .+++|+..+++...     ....+|+        +.++||++||.+..++
T Consensus         1 ~~~~~~~g~~~r~~~~~ds~~~~cg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~cv~~cP~~~~~~   70 (577)
T KOG1362|consen    1 AGFSIVYGDPQRLLYGYDSFGNLCGVKN--NEGIPYLGYFNAKKCSFPLLALTDCK--------SPQLCVLSCPSPQLDT   70 (577)
T ss_pred             CceeEEecCccceecCCCccccccCccc--ccCCCcccccccccccchhhhhcCCC--------CCceecCCCChhhcCC
Confidence            3679999999999999999999999998  68899888765321     1122444        4689999999874432


Q ss_pred             CcccccCCCcccccccccccccccCcccccCccccccccccCCCCcccccCccccccccccccccccccchhhhccCccc
Q 005448          127 LNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVT  206 (696)
Q Consensus       127 ~~~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~S~~~l~RCip~~~~~~~~~~~~~~~~~~~  206 (696)
                      .+.    ++++...+...+  .++++    .+.+...+...+++|++...++.|+++||.|....+.             
T Consensus        71 ~~~----~~~~~~~~~~~~--c~~~~----~~~~~~~~~~~~~~cp~~~~~~~p~~~rc~p~~~~~~-------------  127 (577)
T KOG1362|consen   71 PSD----SDSNASPSGNQL--CVYNF----DPNKRITSLLLQSLCPSAPFPSAPVLHRCVPWTIQED-------------  127 (577)
T ss_pred             ccc----cchhhccCccee--ecCCC----CcccccchhccCCCCCceecCCCchhccCCchhcccc-------------
Confidence            211    000000000000  00000    0111223344578999999999999999999761110             


Q ss_pred             ccchhhhhHHHHHHhhhhhHHHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 005448          207 INEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMF  286 (696)
Q Consensus       207 ~~~~~~~~~~i~~~l~~~~~~~~~~~~Dl~~sw~~il~~~~~ia~vls~i~l~llr~~a~~lvw~~i~~~~~~l~~~~~~  286 (696)
                          .++.+.       ....++++++|+..+|++++. .+.+++++|.+++.++|+.++.++|..+++++++++++.+.
T Consensus       128 ----l~~~~~-------~~~v~~~i~~~i~~sw~~i~~-~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~  195 (577)
T KOG1362|consen  128 ----LIFFKS-------AVSVLHRIFADILRSWYTILS-LLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWF  195 (577)
T ss_pred             ----eeechh-------hHHHHHHHHHHHHHhHHHHHh-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                011111       247889999999999999997 68899999999999999999999999999999999999888


Q ss_pred             eeeeeccccCCcccccccCCCCcccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005448          287 CYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRA-VTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQAL  365 (696)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~i~~~i~ll~~~~~r~rI~~ai~llk~as~~i~~~p~l  365 (696)
                      +|..+....+..  ..++.+ +.++.+.+++.+|+. .+|+++++.++.+++++.+|+||+++++++|+|+|++.++|++
T Consensus       196 ~~~~y~~~~~~~--~~i~~~-~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~  272 (577)
T KOG1362|consen  196 CWFLYAILRNTK--VTIGFT-SSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPST  272 (577)
T ss_pred             HHHHhhhhcccc--ceeecc-hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            887765443322  122332 245667788888888 8999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCCCCCccccCCCccccCCCcceeEEeeccchHHHHHHHHHH-HHH
Q 005448          366 MIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFG-CYW  444 (696)
Q Consensus       366 ~~~pi~~~~~~~~~~~~w~~~~~~l~s~g~~~~~~~~~~~~~~~~~f~~~~~~~~c~~~~~~~~~~~~~~~~~lf~-~~W  444 (696)
                      +++|+.++++.++|+.+|+.++++++++| .. ++  .+|.              |.+  . ....+.+.++++++ ++|
T Consensus       273 ~~~p~~~~~v~~~~i~~wv~~~~~l~t~~-~~-~~--gg~~--------------~~~--~-~~~~~~~~~~~vv~~l~W  331 (577)
T KOG1362|consen  273 LFPPALTFFVLLLFISLWVFVALFLVTSG-PN-SE--GGCA--------------CTY--S-GGSLRILFWLLVVGSLIW  331 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc-cC--CCce--------------eec--c-CCcchhHhHHHHHHHHHH
Confidence            99999999999999999999999999999 21 11  1000              111  1 11245677788887 999


Q ss_pred             HHHHHHhccceeeeeeeeeeecccCCCCCCCCCchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 005448          445 ATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGT  524 (696)
Q Consensus       445 ~~~fi~~~~~~~iAg~va~WYF~~~~~~~~~~~~~v~~s~~r~~~yhlGSia~GSLiiaiv~~iR~il~~i~~~~k~~~~  524 (696)
                      +++|+.|++|+++||++++|||+++|  +|+|..|+..|++|+++||+||+|+|||++++|+++|.++||+++++|+   
T Consensus       332 t~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GSliv~iV~i~R~iL~~i~~~lk~---  406 (577)
T KOG1362|consen  332 TSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGSLLVALVRILRVILRYIRHKLKG---  406 (577)
T ss_pred             HHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHhcc---
Confidence            99999999999999999999999999  6999999999999999999999999999999999999999999999997   


Q ss_pred             CCCChHHHHHHHhhhhHHhhHHHHHHhccccceeEeeecCChhhHhHHHHHHHHHhcccceeeehhhHHHHHHHHHHHHH
Q 005448          525 TPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVS  604 (696)
Q Consensus       525 ~~~n~~~~~i~~c~~c~l~cle~~l~~in~~Ayi~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~~v~~~~l~lgk~~i~  604 (696)
                       .+|+..|+++||++||+||+|++++|+|||||+|+||||||||+|||+||+|++||..|++.+|.++++++|+||+.++
T Consensus       407 -~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~Nv~~vv~~d~vs~~llflgk~l~~  485 (577)
T KOG1362|consen  407 -SQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRNVLRVVDVDLVSDFLLFLGKLLGA  485 (577)
T ss_pred             -CCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence             7789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhcCC---CCCCcHHH
Q 005448          605 LSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGT---AQYAPPLL  681 (696)
Q Consensus       605 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~~ii~y~i~~~f~~v~~~~vdTifvCf~~D~e~~~g~---~~~~~~~L  681 (696)
                      +.++++++.++...     .+.++.+++|.+..++.+|+|+++|+++++|+|||+|+||+||+|.|||+   |++|++.|
T Consensus       486 ~~~g~~g~~~l~~~-----~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n~gs~~~p~~~~~~l  560 (577)
T KOG1362|consen  486 IGSGVAGIWLLIGR-----KDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESNDGSPEKPQFMSEQL  560 (577)
T ss_pred             HHHHHHHHHHHhcC-----CCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhcCCCCCcceeeeHHH
Confidence            99999999887642     11134556776655555599999999999999999999999999999997   89999999


Q ss_pred             HHHHHhhHhhh
Q 005448          682 METLNDQNEMQ  692 (696)
Q Consensus       682 ~~~l~~~~~~~  692 (696)
                      +|.+++.++.+
T Consensus       561 ~~~~~~~~~~~  571 (577)
T KOG1362|consen  561 LEILGRSNKAP  571 (577)
T ss_pred             HHhcccccccc
Confidence            99999888643

>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query696
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 88/589 (14%), Positives = 167/589 (28%), Gaps = 176/589 (29%)

Query: 127 LNWV-CDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPC--Y----------P 173
           L W      E  ++  +++ +  NY    FL   ++    Q       Y           
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 174 VVFPSVNVYWSCQFIARASNMSLKHWQQMGGVTINEDLLIDKSIHRTINSRSAVLKRYMA 233
            VF   NV    Q   +    +L   +    V I                        + 
Sbjct: 124 QVFAKYNV-SRLQPYLKLRQ-ALLELRPAKNVLI----------DG------------VL 159

Query: 234 DIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFN----VLIISVTMFCYI 289
             GK+W  L VC     L   V            + W+ +   N    VL +   +   I
Sbjct: 160 GSGKTWVALDVC-----LSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 290 KVGWI--GNDAISPIIGAHD------------PYY-------HVYGREINHLRAV----T 324
              W    + + +  +  H             PY        +V   +     A      
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCK 267

Query: 325 ILMT--FVMIVAILTSIAIIRRIIMATS-------VLKVAAKIVGE------VQALMIFP 369
           IL+T  F  +   L++       +   S       V  +  K +         + L   P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 370 IIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTP 429
                 L+I     I+ ++    +     N             K VNCD       + T 
Sbjct: 328 RR----LSI-----IAESIRDGLA--TWDN------------WKHVNCD-------KLTT 357

Query: 430 HIAVAI----FFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMK 485
            I  ++           +   +  +   S  I   + S  W   +      ++     + 
Sbjct: 358 IIESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIW--FDVIKSDVMV----VVN 409

Query: 486 RLVRYSL-------GSVALGSLIVSFVESV-------RFILES--IRRKMKVFGTTPDSW 529
           +L +YSL        ++++ S+ +     +       R I++   I +        P   
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 530 --YGKAAFYSSQGI-LRCIEWTVK-SVNRNAYIMIAITGKSFCRASSIATELIINNILRI 585
             Y    FYS  G  L+ IE   + ++ R  ++        F            N     
Sbjct: 470 DQY----FYSHIGHHLKNIEHPERMTLFRMVFLDF-----RFLEQKIRHDSTAWNA--SG 518

Query: 586 GRVNVIGDVILFLGKLCVS------LSSAVFAFLM-LDTHKYRSAHNKI 627
             +N +  +  +   +C +      L +A+  FL  ++ +   S +  +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00